Query 010145
Match_columns 517
No_of_seqs 129 out of 1662
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3.7E-28 1.3E-32 257.0 27.5 407 1-513 49-478 (491)
2 2xut_A Proton/peptide symporte 100.0 8.7E-29 3E-33 264.2 21.2 435 3-513 51-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-25 4.4E-30 234.3 25.7 370 3-508 59-435 (451)
4 4gc0_A D-xylose-proton symport 99.9 1.1E-25 3.9E-30 237.8 23.2 411 5-516 54-472 (491)
5 3o7q_A L-fucose-proton symport 99.9 8.5E-24 2.9E-28 219.8 27.4 142 1-174 56-226 (438)
6 2gfp_A EMRD, multidrug resista 99.9 7.6E-23 2.6E-27 208.6 12.4 139 1-171 30-168 (375)
7 2cfq_A Lactose permease; trans 99.8 9E-20 3.1E-24 189.2 9.6 362 1-513 38-406 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.1 3.5E-10 1.2E-14 117.1 11.9 146 1-176 283-432 (451)
9 2cfq_A Lactose permease; trans 98.9 1E-09 3.6E-14 113.2 8.3 138 7-176 260-398 (417)
10 3o7q_A L-fucose-proton symport 98.9 6.6E-09 2.2E-13 107.1 13.3 136 1-171 290-426 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.8 1.2E-08 4.2E-13 107.0 9.7 155 2-180 315-474 (491)
12 4gc0_A D-xylose-proton symport 98.6 8.8E-07 3E-11 92.6 16.2 150 3-180 309-465 (491)
13 2gfp_A EMRD, multidrug resista 98.3 1.7E-06 5.7E-11 87.2 9.2 138 323-509 40-177 (375)
14 2xut_A Proton/peptide symporte 98.2 5.2E-06 1.8E-10 87.6 10.9 135 325-507 61-199 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.7e-28 Score=257.05 Aligned_cols=407 Identities=17% Similarity=0.281 Sum_probs=274.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcc-cCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADA-FFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 79 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr-~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (517)
+|.|..+++++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++++++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~--------------------- 106 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF--------------------- 106 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC---------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 57899999999999999999999999999999 6 999999999999999999998874
Q ss_pred CCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 010145 80 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWG 159 (517)
Q Consensus 80 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~ 159 (517)
+++.++++|+++|+|.|...|+..++++|++|+++. +|+.++++++...++|..++|.+++++.+..+||++
T Consensus 107 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 107 ----GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp ----STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455799999999999999999999999999997652 377889999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccc---CCCCC-chhHHHHHHHH-------------HHHhhccCCCCCCcccccccCC
Q 010145 160 FGISTATILLSIPIFLLGSPFYRNK---IPTGS-PLTTIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSP 222 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~ 222 (517)
|++.++..+++++.+++..+++..+ +++++ +.++..+.... .....+ ..
T Consensus 179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--~~------------ 244 (491)
T 4aps_A 179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG--WN------------ 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS--SC------------
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc--Cc------------
Confidence 9998877776666555443322221 11111 11111110000 000000 00
Q ss_pred CCCCCCCcCCCCcccCCCCCCCCCchhHHHHHhhhcCC----CCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 010145 223 TCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNP----AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298 (517)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (517)
+..+............+ ...|+. ......++++.....+++....+++..+.+.
T Consensus 245 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4aps_A 245 ---------------------SLPAYINLLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQG 302 (491)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGG
T ss_pred ---------------------ccccchhhhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000000000000000 000000 0001123344444556666677777777777
Q ss_pred hhHHHHHHHH-hccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHH
Q 010145 299 STFSVQQAAT-MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAA 377 (517)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~ 377 (517)
...+..+... .+.. ..+.+.+..++.+..++..++.+++.+++.||. .....++..|.++.++++++..
T Consensus 303 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 303 SVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp GTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTH
T ss_pred cHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHH
Confidence 7655444322 2221 134556778888888888888888887776653 3556777889998888887776
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010145 378 LVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTV 457 (517)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~ 457 (517)
...... +...+.+.+++++.+++.+++++...+..++++.|..|++.||+++|+.+....+|..+++.
T Consensus 373 ~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 373 IPGALY------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHC------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHhc------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653110 01123466778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 458 LVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
+.+.+.+ .++...|++.++++++..++.++..++.+++
T Consensus 441 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNA------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGG------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhc------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777642 2345578888888888877777666555543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=8.7e-29 Score=264.25 Aligned_cols=435 Identities=20% Similarity=0.346 Sum_probs=265.2
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccC-cchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~-Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
.|..+++++.+.+.++..++.+++|+++|| + |||+++.++.++.+++.++++++. .
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~--~-------------------- 107 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFE--H-------------------- 107 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTS--S--------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhc--c--------------------
Confidence 899999999999999999999999999999 7 999999999999999999998874 0
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 161 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~ 161 (517)
+.+.++++|++.|+|.|...|+..+++.|++|+++ |+++...+++.+.+.++|..++|.+++++.+..+||+.|+
T Consensus 108 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 182 (524)
T 2xut_A 108 --SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG 182 (524)
T ss_dssp --CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred --cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45679999999999999999999999999999876 2223556667999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCccc-------ccccCCCCCCCCCcCCCC
Q 010145 162 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVT-------EVHSSPTCSNESRDEGNS 234 (517)
Q Consensus 162 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~ 234 (517)
+.++..+++.+.+++..++.+++++++++..+..+.+....++++.+.+...... ... +.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 250 (524)
T 2xut_A 183 IPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAY-------ALV----- 250 (524)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHH-------TGG-----
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhh-------hhc-----
Confidence 9888777766666555444333222222111111111111111100000000000 000 000
Q ss_pred cccCCCCCCC--------------CCchhHH--HHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 010145 235 NVKEKVPSQK--------------PTEDIKF--LNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 298 (517)
Q Consensus 235 ~~~~~~~~l~--------------~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (517)
...... ...+..| +++.+. ...++...++|+++....++.....++..+.+.
T Consensus 251 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (524)
T 2xut_A 251 ----NIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK--------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQK 318 (524)
T ss_dssp ----GTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCC--------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSST
T ss_pred ----ccchhhhhhhhhhhhhhhhcccccchhhHHhhhhc--------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000000 0000001 110000 001111223344555555556666666777777
Q ss_pred hhHHHHHHHHhccCCCCeeeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHH
Q 010145 299 STFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAAL 378 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~ 378 (517)
.+.+..+...++... + .+.+.+..++.+..++..++.+++..+..+|+.+| .....++.+|+++.++++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 392 (524)
T 2xut_A 319 ASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGT 392 (524)
T ss_dssp TTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTT
T ss_pred chhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHH
Confidence 776655544443321 0 12334556666777777777777665555554333 45566777888888887776654
Q ss_pred HHHHHHHHhhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010145 379 VEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVL 458 (517)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~ 458 (517)
.... . +.....+.+++++.+++.+++++...+..++++.+.+|++.||+++|+.++...+|+.+++.+
T Consensus 393 ~~~~----------~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~ 460 (524)
T 2xut_A 393 IQLM----------M--DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLA 460 (524)
T ss_dssp TTTT----------T--TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHH
T ss_pred HHHH----------h--cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3100 0 001134667788889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 459 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
.+.+...+. .+|.++.+. +...+.|++.+++++++.++++++.++++++
T Consensus 461 ~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 461 NVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp HHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 988753210 012110000 0012337888888888888777776666544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.3e-25 Score=234.25 Aligned_cols=370 Identities=8% Similarity=-0.037 Sum_probs=233.8
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHH----hhhccCCCCCCcccccCCCccc
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV----QAHTRSLKPPTCVLEDGIASCR 78 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~----a~~~~~~~~~~~~~~~~~~~~~ 78 (517)
.|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++ +.
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 117 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------------------- 117 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc--------------------
Confidence 5788999999999999999999999999995 9999999999999999999998 64
Q ss_pred CCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-ch
Q 010145 79 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQ 157 (517)
Q Consensus 79 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~ 157 (517)
+++.++++|+++|+|.|...++..+++.|++|+++ |++++++...+.++|.+++|.+++++.+..+ ||
T Consensus 118 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 118 -----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp -----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred -----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 45579999999999999999999999999999877 9999999999999999999999999888888 99
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
+.|++.++..++..+..++..++.+......+. + +. +.++++ +.
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~--------------~~~~~~---~~ 230 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------------EY--------------KNDYPD---DY 230 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------------TT--------------CCC--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------------hh--------------cccccc---cc
Confidence 999998877665554443333321111100000 0 00 000000 00
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
++ ...++. .++....++....+.++.. .+...+.+.......... ..+++...+...
T Consensus 231 ~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~ 287 (451)
T 1pw4_A 231 NE-KAEQEL----------------TAKQIFMQYVLPNKLLWYI---AIANVFVYLLRYGILDWS---PTYLKEVKHFAL 287 (451)
T ss_dssp -------------------------CCTHHHHHHTSSCHHHHHH---HHHHHHHHHHHHHHHHHH---HHHBTTBSCCCH
T ss_pred hh-hhhccc----------------ccccchHHHHHcCHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHhcCCCH
Confidence 00 000000 0000000000001222211 111111112222222221 223332221000
Q ss_pred eCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 318 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
...+.+.....+..++..++..++.+++.+ +.+..+..+.++.+ ++++.....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----------------- 341 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN----------------- 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-----------------
Confidence 111123333444444555555555544410 11222444444443 444333321
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWL 475 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g~~l~~~~~~~~~~~~~~~~~~~~~ 475 (517)
...+.+.+....++.|++.....+....+..+..|++.||+++|+.+....+ |..+++.+.+.+.+.
T Consensus 342 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---------- 409 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---------- 409 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------
T ss_pred --cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 1124556667777888888888888889999999999999999999999999 999999999887632
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010145 476 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 508 (517)
Q Consensus 476 ~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~ 508 (517)
.+++..|++.+++.+++.++.++..+
T Consensus 410 -------~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 410 -------FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp -------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24577888888888888776666543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.1e-25 Score=237.83 Aligned_cols=411 Identities=14% Similarity=0.116 Sum_probs=231.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
+.+.+++++++.+|..++++++|+++||+ |||+++.++.+++++++++++++........+. ......-..+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-------~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-------hHHHHHHhhh
Confidence 45678999999999999999999999995 999999999999999999999653211000000 0000001126
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccCc
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED--------NKGW 156 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~--------~~gw 156 (517)
+++++++|+++|+|.|+..++.+.+++|..|+++ |++..++...+..+|.++++.++..+.. ..+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999887 9999999999999999999988776643 2457
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcc
Q 010145 157 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 236 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (517)
|+.+.+..+..++.++..++. |+-++.-..+.+.++..+.+.+...+..... +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~-------~~------------------ 253 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTV-PESPRWLMSRGKQEQAEGILRKIMGNTLATQ-------AV------------------ 253 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGS-CCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------HH------------------
T ss_pred HHHhhhhhhhhhhhhhhhhcC-CCChHHHHHcCchhHHHHhHHHhcCCchhHH-------HH------------------
Confidence 777776666555444333222 2111100011222222222222111110000 00
Q ss_pred cCCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCe
Q 010145 237 KEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 316 (517)
Q Consensus 237 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (517)
.+.....++.+.. . .......+++.........++..... +....+. .......+..
T Consensus 254 ---------~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~ 310 (491)
T 4gc0_A 254 ---------QEIKHSLDHGRKT----G----GRLLMFGVGVIVIGVMLSIFQQFVGI-----NVVLYYA-PEVFKTLGAS 310 (491)
T ss_dssp ---------HHHHHHHHHHHHH----T----THHHHSCCTHHHHHHHHHHHHHHTCH-----HHHHHHH-HHHHHHSSCC
T ss_pred ---------HHHHHHHHhhhhh----h----hHHHHhcccHHHHHHHHHHHHHHhhh-----hHHHhcc-hHHHHhcCCC
Confidence 0000000000000 0 00000001111111111111111111 1111011 1111111100
Q ss_pred eeCCCCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010145 317 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS 396 (517)
Q Consensus 317 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (517)
.........+..+..++...+...+.|++.||. .+..+...++++++..+.....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~-------------- 365 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT-------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc--------------
Confidence 000111122333344444455555566555542 3566777777776665544210
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 010145 397 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF 476 (517)
Q Consensus 397 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (517)
.......++..+++.........|..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+.. |.
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~- 435 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL- 435 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH-
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-
Confidence 11122222222233333333345667789999999999999999999999999999998888765321 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 010145 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 516 (517)
Q Consensus 477 ~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~~~~ 516 (517)
....+....|++++++++++.+..+++.++.|.|+.|
T Consensus 436 ---~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 436 ---VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred ---HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 0012334578899999999999888999999888643
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=8.5e-24 Score=219.75 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=126.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHH---HHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL---TVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~---~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++ +.++
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~------------------- 115 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM------------------- 115 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc-------------------
Confidence 588999999999999999999999999999995 99999999999999999999 5543
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cccC-
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG- 155 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~-~~~g- 155 (517)
+++.++++|++.|+|.|...++..++++|++|+++ |++.+++...+.++|..++|.+++++. +..+
T Consensus 116 ------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 116 ------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred ------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 67789999999999999999999999999999887 999999999999999999999999997 5544
Q ss_pred ------------------------chhhHHHHHHHHHHHHHHH
Q 010145 156 ------------------------WQWGFGISTATILLSIPIF 174 (517)
Q Consensus 156 ------------------------w~~~f~i~~~~~~~~l~~~ 174 (517)
||+.|++.+...++..+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999987665555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=7.6e-23 Score=208.56 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=128.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.++.+++.+.+.++..++.++.|+++||+ ||||++.++..+.+++.++.++++
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 86 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS---------------------- 86 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH----------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc----------------------
Confidence 578999999999999999999999999999995 999999999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
+++.++++|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..++|.+++++.+..+||+.|
T Consensus 87 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence 56789999999999999999999999999999887 999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHH
Q 010145 161 GISTATILLSI 171 (517)
Q Consensus 161 ~i~~~~~~~~l 171 (517)
++.++..++..
T Consensus 158 ~~~~~~~~~~~ 168 (375)
T 2gfp_A 158 LFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98776655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.79 E-value=9e-20 Score=189.22 Aligned_cols=362 Identities=10% Similarity=0.026 Sum_probs=202.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHH---HHHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL---LTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l---~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.|..+++++.+.+.++..++++++|+++||+ ||||++.++..+++++... .+.+....
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------- 100 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQ---------------- 100 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHHHH----------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 478999999999999999999999999999995 9999999998887653221 12221100
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 157 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~ 157 (517)
..++.++++.+++.|...+...+.+.++.++.. ++|+..++......++|..++|.+++++.+ .+||
T Consensus 101 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~ 167 (417)
T 2cfq_A 101 --------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ 167 (417)
T ss_dssp --------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred --------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 013456666666666666555555555543221 136777778877889999999999999976 6899
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCccc
Q 010145 158 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 237 (517)
Q Consensus 158 ~~f~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (517)
+.|++.++..++.++..+...++ +++..+ +.++ .
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------------~~~~-----~- 201 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTD----APSSAT------------------------------------VANA-----V- 201 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------------------------SSSS-----S-
T ss_pred HHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------------------------cccc-----c-
Confidence 99997655533332222111111 100000 0000 0
Q ss_pred CCCCCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCee
Q 010145 238 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 317 (517)
Q Consensus 238 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
+ ...++....++.+. ..+ +.++............+..+.+....+.. ...+.. +
T Consensus 202 -~-~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~ 255 (417)
T 2cfq_A 202 -G-ANHSAFSLKLALEL-----------------FRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFFT--SFFATG----E 255 (417)
T ss_dssp -S-SCCCCCCHHHHHHH-----------------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSSSH----H
T ss_pred -c-cccccccHHHHHHH-----------------hcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc----C
Confidence 0 00000000011100 011 11221111111111112222222111111 111100 0
Q ss_pred eCC---CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010145 318 VPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 394 (517)
Q Consensus 318 ~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 394 (517)
... +....++.+..++...+..++.||+.+| +.+..+.++.+++++..+..
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~--------------- 309 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA--------------- 309 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------
Confidence 001 1122233333344444555555544433 23556666666655444321
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 010145 395 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTP 473 (517)
Q Consensus 395 ~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 473 (517)
.+.+.++....+.+++.....+....+..|..|++.||++.++ .+..+.+|+.+++.+.+.+.+
T Consensus 310 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--------- 374 (417)
T 2cfq_A 310 ------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--------- 374 (417)
T ss_dssp ------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---------
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---------
Confidence 1334455555566777666667777899999999999999999 488889999999999987652
Q ss_pred CccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010145 474 WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
..+++..|++.+++++++.++.++..++.++.
T Consensus 375 --------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 375 --------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp --------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred --------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 13456778888888888877766655554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.09 E-value=3.5e-10 Score=117.08 Aligned_cols=146 Identities=13% Similarity=0.161 Sum_probs=124.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccC--cchHHHHHHHHHHH-HHHHHHHHhhhccCCCCCCcccccCCCcc
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF--TTYRIYVISAAIEF-MGLLLLTVQAHTRSLKPPTCVLEDGIASC 77 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~--Grk~~l~~~~~l~~-ig~~l~~~a~~~~~~~~~~~~~~~~~~~~ 77 (517)
+|.+..+++++.+.+.++..++.++.|+++|| + |||+.+.++..+.. ++.++..+..+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 343 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPA------------------ 343 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCT------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 47888999999999999999999999999999 8 99999988887777 55555444311
Q ss_pred cCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCc
Q 010145 78 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw 156 (517)
.+.+.+.+..++.|++.+...+....++.|.+|+++ |++++++.....++ |..++|.+.|++.+..||
T Consensus 344 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 344 -----GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp -----TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred -----cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 145667788889999999999999999999999887 99999999999999 999999999999998999
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 010145 157 QWGFGISTATILLSIPIFLL 176 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~ 176 (517)
+..|++.++..+++.+..++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888777766655544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.94 E-value=1e-09 Score=113.21 Aligned_cols=138 Identities=8% Similarity=0.012 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCchhH
Q 010145 7 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 86 (517)
Q Consensus 7 ~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (517)
+.+++.+...++..++.+++|+++||+ |||+++..+..+.+++.++.+++. +.+
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~-------------------------~~~ 313 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------------SAL 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC-------------------------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc-------------------------cHH
Confidence 346666666677888899999999995 999999999888888766665542 345
Q ss_pred HHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 010145 87 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 165 (517)
Q Consensus 87 ~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~~~ 165 (517)
.+++..++.+++.+...+....++.|.+|++. |+...++ +....++|..++|.++|++.+..|++..|.+.++
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 67777778888888777888899999999876 8998888 4777789999999999999888889999998777
Q ss_pred HHHHHHHHHHh
Q 010145 166 TILLSIPIFLL 176 (517)
Q Consensus 166 ~~~~~l~~~~~ 176 (517)
..+++.+..+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 76666655443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.92 E-value=6.6e-09 Score=107.09 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=111.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.+..+++++.+.+.++..++.+++|+++|| +|||+.+.++..+.+++.++....+
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 346 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG---------------------- 346 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 47899999999999999999999999999999 5999999999999988888877753
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC-chhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~g-w~~~ 159 (517)
+.. ..+.-++.|++.+...|...++..|.+|++ |+...++.. ...+|..++|.+.|++.+..| ++..
T Consensus 347 ---~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 347 ---GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp ---HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred ---CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 222 334447899999999999999999988843 444445444 566999999999999999888 9999
Q ss_pred HHHHHHHHHHHH
Q 010145 160 FGISTATILLSI 171 (517)
Q Consensus 160 f~i~~~~~~~~l 171 (517)
|.+..+..++.+
T Consensus 415 ~~~~~~~~~~~~ 426 (438)
T 3o7q_A 415 ELIPALCFAVIF 426 (438)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998765544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.78 E-value=1.2e-08 Score=106.99 Aligned_cols=155 Identities=12% Similarity=0.016 Sum_probs=116.7
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHH-----HHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCc
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-----ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 76 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~-----~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~ 76 (517)
+.+..+.+++.+...++..++.++.|++.||+ |||+... .+..+.+++.++.+.......
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 379 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-------------- 379 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC--------------
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence 34445678888888899999999999999995 9987655 777777777777666431110
Q ss_pred ccCCCCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 010145 77 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 156 (517)
Q Consensus 77 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw 156 (517)
.+...+.+.+.+.-++.|+|.+...|....++.|.+|+++ |+.+.++.+...++|..++|.+.+++.+ .++
T Consensus 380 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~ 450 (491)
T 4aps_A 380 --TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSE 450 (491)
T ss_dssp --CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SST
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccH
Confidence 0112255677788899999999999999999999999888 9999999999999999999999998876 577
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 157 QWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 157 ~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
...|.+.+...+++.+..++..++
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887766666655555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.57 E-value=8.8e-07 Score=92.63 Aligned_cols=150 Identities=12% Similarity=0.007 Sum_probs=106.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCC
Q 010145 3 FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG 82 (517)
Q Consensus 3 ~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (517)
.+..+.........+...++.++++++.||+ |||+.++.+....+++.+.++.......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------------------- 367 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-------------------- 367 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc--------------------
Confidence 4455556666667788888999999999995 9999999999999988877766532111
Q ss_pred chhHHHH-HHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc------ccC
Q 010145 83 GKAVMLF-AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NKG 155 (517)
Q Consensus 83 ~~~~~l~-~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~------~~g 155 (517)
.....+. ...+..+++ ....|....+.+|.+|.+. |+.+.++.....++|..+++.+.+.+.+ ..+
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1222222 222223333 3345677889999999887 9999999999999999999988777643 245
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCc
Q 010145 156 WQWGFGISTATILLSIPIFLLGSPF 180 (517)
Q Consensus 156 w~~~f~i~~~~~~~~l~~~~~~~~~ 180 (517)
+...|++.+++.+++.+..++..|+
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecC
Confidence 6677887777776666655554444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.28 E-value=1.7e-06 Score=87.16 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=104.5
Q ss_pred cCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccc
Q 010145 323 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 402 (517)
Q Consensus 323 ~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (517)
......+...+..++..++.||+.||+. +..+.++.+++.+..... .+
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~-----------~~~~~~~~~~~~~~~~~~---------------------~~ 87 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPV-----------ILVGMSIFMLATLVAVTT---------------------SS 87 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCC-----------CHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchh-----------HHHHHHHHHHHHHHHHHh---------------------cc
Confidence 4455566666777777777777665532 567777777777766654 25
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCc
Q 010145 403 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 482 (517)
Q Consensus 403 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (517)
.+.++...++.|++.+...+....++.|..|++.|++++++.+....+|..+++.+.+.+.+ .
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----------------~ 150 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-----------------M 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-----------------H
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------h
Confidence 56777788899999999999999999999999999999999999999999999999887641 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhc
Q 010145 483 YHLERFYWLMCILGGLNFLHFLFWAAR 509 (517)
Q Consensus 483 ~~~~~~f~~~~~l~lv~~~~~~~~~~~ 509 (517)
.+|+..|++.+++.++..+..++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 467888888888877776544444433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.19 E-value=5.2e-06 Score=87.61 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=96.4
Q ss_pred CchhHHHHHHHhhhhhhhhhc-ccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccch
Q 010145 325 VFPVIFILILAPVYNHVIIPF-ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 403 (517)
Q Consensus 325 ~~~~~~~~i~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (517)
....+...+..++..++.|++ .|| +.+.++.++.+++.++.... +.+.
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 109 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF--------------------EHSV 109 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------cccH
Confidence 334444455555556666555 433 33677777777777766653 1256
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 010145 404 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 480 (517)
Q Consensus 404 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (517)
+.+++..++.|++.+...|...+++.|..|++.|++.+++ .+....+|..+++.+.+.+.+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------------- 173 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------------- 173 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH----------------
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 6777788899999999999999999999999999877666 888888898888888776642
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010145 481 NHYHLERFYWLMCILGGLNFLHFLFWA 507 (517)
Q Consensus 481 ~~~~~~~~f~~~~~l~lv~~~~~~~~~ 507 (517)
..+|+..|++.+++.++..+.+++..
T Consensus 174 -~~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 174 -NFGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13568888888888777766554433
Done!