Query 010145
Match_columns 517
No_of_seqs 129 out of 1662
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 20:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010145.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010145hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 5.5E-26 4E-30 233.4 26.3 150 1-178 54-204 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 1.4E-20 1.1E-24 188.5 21.8 363 1-511 38-404 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.1 9.4E-11 6.8E-15 115.8 9.2 141 5-177 258-399 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 98.8 5.9E-09 4.3E-13 104.7 11.6 147 2-175 281-428 (447)
5 d2iuba2 f.17.3.1 (A:286-349) M 7.8 90 0.0065 20.2 1.9 19 488-506 42-60 (64)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 6.8 2.7E+02 0.02 19.4 4.5 10 497-506 42-51 (100)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 5.2 92 0.0067 21.8 0.8 25 489-513 22-46 (91)
8 d3b45a1 f.51.1.1 (A:91-270) Gl 2.8 6.5E+02 0.047 18.8 4.4 32 24-56 70-101 (180)
9 d2b0la1 a.4.5.66 (A:167-257) G 2.6 1.9E+02 0.014 19.7 0.5 21 22-43 33-53 (91)
10 d1lghb_ f.3.1.1 (B:) Light-har 2.3 6.7E+02 0.049 14.6 3.2 29 482-510 15-43 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=5.5e-26 Score=233.43 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=130.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|+|.+|.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.++++++.....
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 114 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------------------ 114 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------------------
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh------------------
Confidence 478999999999999999999999999999995 9999999999999999999988754332
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-cCchhh
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWG 159 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~-~gw~~~ 159 (517)
+++.+++.|++.|++.|...++...+++|++|+++ |++++++...+.++|..++|.+++.+... .+||+.
T Consensus 115 ---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~ 185 (447)
T d1pw4a_ 115 ---SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 185 (447)
T ss_dssp ---SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred ---hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 46689999999999999999999999999999887 99999999999999999999988876553 489999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 010145 160 FGISTATILLSIPIFLLGS 178 (517)
Q Consensus 160 f~i~~~~~~~~l~~~~~~~ 178 (517)
|++.+...++..+..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhHHHHHHHHHHhc
Confidence 9987776655544444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.85 E-value=1.4e-20 Score=188.53 Aligned_cols=363 Identities=9% Similarity=0.010 Sum_probs=210.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCC
Q 010145 1 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 80 (517)
Q Consensus 1 l~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (517)
+|.|.+|+|++.+++.++..+++++.|+++||+ ||||+++++..+..++.++.....+.+.
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~------------------ 98 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL------------------ 98 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHTHHHH------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhhhhhh------------------
Confidence 378999999999999999999999999999995 9999999999999999888887643221
Q ss_pred CCchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccCchhhH
Q 010145 81 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 81 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig~~i~g~l~~~~gw~~~f 160 (517)
.....++.+.+.+.+.+...+.......+..+++ .+++.+..+........+..++|.+++++.+ .+|+..+
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 170 (417)
T d1pv7a_ 99 ---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp ---HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred ---HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHHhhhhcccccccccccccccc-ccccccc
Confidence 1223445555555555555555554444433322 2236667778888889999999999999876 4666666
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCcCCCCcccCCC
Q 010145 161 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 240 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (517)
.+......+..+...+..++.+..++++++ ++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--------------------------------- 204 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGAN--------------------------------- 204 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSC---------------------------------
T ss_pred cchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhh---------------------------------
Confidence 655444443333333333221111110000 0000
Q ss_pred CCCCCCchhHHHHHhhhcCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHhhhchhHHHHHHHHhccCCCCeeeCC
Q 010145 241 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP 320 (517)
Q Consensus 241 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
.+........+ .. .+ +..................... ..... ............
T Consensus 205 --~~~~~~~~~~~-~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~ 258 (417)
T d1pv7a_ 205 --HSAFSLKLALE-LF----------------RQ-PKLWFLSLYVIGVSCTYDVFDQ---QFANF---FTSFFATGEQGT 258 (417)
T ss_dssp --CCCCCHHHHHH-HT----------------TS-SHHHHHHHHHHHHHHHHHHHHH---HHHHH---HTTSSSCHHHHH
T ss_pred --ccccccccccc-cc----------------cc-ccccchhhhhHHHHHHHHhhhc---ccccc---ccccccccccch
Confidence 00000000000 00 00 0000000000111110111100 00000 010000000000
Q ss_pred ---CCcCCchhHHHHHHHhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 010145 321 ---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 397 (517)
Q Consensus 321 ---~~~~~~~~~~~~i~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (517)
........+...+...+ ..++.+|. ...+.+..+.++.+++++.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~----~~~l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------ 309 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFF----APLIINRI-------GGKNALLLAGTIMSVRIIGSSFA------------------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----HHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred hhhcccccccccccccchhh----hhhhhccc-------ccccchhhhHHHHHHhhhccccc------------------
Confidence 01111222222233333 33333332 33444677777777766655542
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhhhHHHhhcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 010145 398 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLF 476 (517)
Q Consensus 398 ~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (517)
.+.+.++...++.+++.+...+...+++.|.+|++.|+++.++. ++...+|..+++.+.+.+.+
T Consensus 310 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~------------ 374 (417)
T d1pv7a_ 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------------ 374 (417)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH------------
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 35667777888899999999999999999999999999999985 56788999999999888763
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010145 477 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 511 (517)
Q Consensus 477 ~~~~~~~~~~~~f~~~~~l~lv~~~~~~~~~~~~~ 511 (517)
..+++..|++.++++++..++..+..++.+
T Consensus 375 -----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 375 -----SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -----HHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 245677888889888888877777765554
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.08 E-value=9.4e-11 Score=115.80 Aligned_cols=141 Identities=8% Similarity=-0.004 Sum_probs=120.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCCCch
Q 010145 5 PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGK 84 (517)
Q Consensus 5 ~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (517)
....+...+...++..++.++.+++.||+ |||+++.++..+.+++.++..+.+ +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 311 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------------S 311 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------------------C
T ss_pred hhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------------------c
Confidence 34567777888888999999999999995 999999999999999988888764 5
Q ss_pred hHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhccccCchhhHHHH
Q 010145 85 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNKGWQWGFGIS 163 (517)
Q Consensus 85 ~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~ig~~i~g~l~~~~gw~~~f~i~ 163 (517)
.+.+++..++.|++.+...+...+++.|.+|+++ |++.++..+ ....+|..++|.++|++.+..||+..|++.
T Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 6678888899999999999999999999999887 999999754 566799999999999999999999999987
Q ss_pred HHHHHHHHHHHHhc
Q 010145 164 TATILLSIPIFLLG 177 (517)
Q Consensus 164 ~~~~~~~l~~~~~~ 177 (517)
++..++..++..+.
T Consensus 386 ~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 386 GLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77766555554443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.83 E-value=5.9e-09 Score=104.74 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=114.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhHHhhcccCcchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCcccCCC
Q 010145 2 HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDE 81 (517)
Q Consensus 2 ~~s~~~~~~i~s~f~~~~~l~~l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (517)
|.+..+.++..+.+.++..++.+++|++.||+ +||+..........+...........+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 339 (447)
T d1pw4a_ 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYWMNP-------------------- 339 (447)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTTSCC--------------------
T ss_pred ccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHHhcc--------------------
Confidence 67888999999999999999999999999995 987765555544444333333321111
Q ss_pred CchhHHHHHHHHHHHHhcccccccchhhhcccCCcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHhhccccCchhhH
Q 010145 82 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGF 160 (517)
Q Consensus 82 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~d~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~ig~~i~g~l~~~~gw~~~f 160 (517)
..+.+..++..++.|++.++..+....+..|.+|++. |+.+.++.+...++ |.+++|.+.|++.+..||+..|
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 413 (447)
T d1pw4a_ 340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 413 (447)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 1156677788888999999999999999999999877 99999999888887 5677899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010145 161 GISTATILLSIPIFL 175 (517)
Q Consensus 161 ~i~~~~~~~~l~~~~ 175 (517)
++..+..+++.+.+.
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 414 MVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877666665554443
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.85 E-value=90 Score=20.15 Aligned_cols=19 Identities=5% Similarity=0.499 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010145 488 FYWLMCILGGLNFLHFLFW 506 (517)
Q Consensus 488 ~f~~~~~l~lv~~~~~~~~ 506 (517)
++++.++..+++++.++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 42 YPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455444444444443
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.78 E-value=2.7e+02 Score=19.36 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010145 497 GLNFLHFLFW 506 (517)
Q Consensus 497 lv~~~~~~~~ 506 (517)
++.....+..
T Consensus 42 ~V~~~l~~~~ 51 (100)
T d3dtub2 42 FVTLLILYAV 51 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.22 E-value=92 Score=21.81 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 010145 489 YWLMCILGGLNFLHFLFWAARYKYS 513 (517)
Q Consensus 489 f~~~~~l~lv~~~~~~~~~~~~~~~ 513 (517)
+++.+++.++-..++.+...|+|++
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHhhheeeecc
Confidence 4444444433333444445555544
No 8
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=2.80 E-value=6.5e+02 Score=18.82 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=19.5
Q ss_pred hhhHHhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 010145 24 LFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV 56 (517)
Q Consensus 24 l~~G~laDr~~Grk~~l~~~~~l~~ig~~l~~~ 56 (517)
.+|..+-++ +|+||.+.+-...-..|.+....
T Consensus 70 ~~G~~lE~~-~G~~~~~~~~~~~~~~g~l~~~~ 101 (180)
T d3b45a1 70 YLGGAVEKR-LGSGKLIVITLISALLSGYVQQK 101 (180)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccchhheeeeeHHHHHHHHHHHH
Confidence 445555556 69999877655555555554443
No 9
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.65 E-value=1.9e+02 Score=19.72 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=15.3
Q ss_pred hhhhhHHhhcccCcchHHHHHH
Q 010145 22 LALFGGFLADAFFTTYRIYVIS 43 (517)
Q Consensus 22 ~~l~~G~laDr~~Grk~~l~~~ 43 (517)
+.+.+..+|||. |--|..++-
T Consensus 33 GllvASkiADrv-giTRSVIVN 53 (91)
T d2b0la1 33 GLLVASKIADRV-GITRSVIVN 53 (91)
T ss_dssp EEECHHHHHHHH-TCCHHHHHH
T ss_pred ceEeehhhhhhh-CchHHHHHH
Confidence 346788899995 988776653
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.29 E-value=6.7e+02 Score=14.59 Aligned_cols=29 Identities=14% Similarity=0.389 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010145 482 HYHLERFYWLMCILGGLNFLHFLFWAARY 510 (517)
Q Consensus 482 ~~~~~~~f~~~~~l~lv~~~~~~~~~~~~ 510 (517)
+..+-.-|+.+.++++++=++.+.+.++.
T Consensus 15 H~~~~~g~~~F~~iAvvAHiLvw~wrPWl 43 (43)
T d1lghb_ 15 HDQFKTTFSAFIILAAVAHVLVWVWKPWF 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Done!