Query 010147
Match_columns 517
No_of_seqs 359 out of 3408
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 99.9 1.9E-21 6.3E-26 185.6 18.5 174 336-509 12-193 (258)
2 4ew8_A Sensor protein DIVL; si 99.8 1.2E-19 4.1E-24 173.9 21.5 169 333-502 29-200 (268)
3 3jz3_A Sensor protein QSEC; he 99.8 1.1E-19 3.9E-24 168.8 8.9 166 344-513 2-169 (222)
4 3a0r_A Sensor protein; four he 99.8 4E-18 1.4E-22 169.7 14.6 159 342-504 130-291 (349)
5 1gkz_A [3-methyl-2-oxobutanoat 99.7 1.1E-17 3.8E-22 169.0 12.8 170 339-510 116-299 (388)
6 3d36_A Sporulation kinase B; G 99.7 8.4E-17 2.9E-21 151.6 13.8 155 341-502 11-168 (244)
7 4fpp_A Phosphotransferase; fou 99.7 1.5E-16 5E-21 150.4 15.1 142 347-503 49-192 (247)
8 2q8g_A [pyruvate dehydrogenase 99.7 5.2E-17 1.8E-21 165.1 9.0 156 344-502 106-295 (407)
9 2e0a_A Pyruvate dehydrogenase 99.7 9.1E-17 3.1E-21 162.5 10.8 155 346-503 97-283 (394)
10 3p01_A Two-component response 99.7 1.2E-15 4E-20 137.4 16.2 172 125-312 11-182 (184)
11 2btz_A Pyruvate dehydrogenase 99.7 1.6E-15 5.5E-20 153.4 17.0 155 346-502 97-283 (394)
12 1y8o_A [pyruvate dehydrogenase 99.6 1.1E-15 3.7E-20 155.9 10.3 157 344-503 118-307 (419)
13 3trc_A Phosphoenolpyruvate-pro 99.6 3.6E-14 1.2E-18 125.3 16.2 165 140-318 4-170 (171)
14 3e0y_A Conserved domain protei 99.6 8.2E-15 2.8E-19 130.6 11.4 171 134-318 5-175 (181)
15 2e4s_A CAMP and CAMP-inhibited 99.6 2.2E-14 7.4E-19 129.1 13.1 172 135-320 4-187 (189)
16 2zmf_A CAMP and CAMP-inhibited 99.6 4.8E-14 1.6E-18 126.6 14.4 164 141-318 10-185 (189)
17 4glq_A Methyl-accepting chemot 99.5 3.8E-14 1.3E-18 125.5 13.2 156 149-318 2-163 (171)
18 3k2n_A Sigma-54-dependent tran 99.5 6.2E-14 2.1E-18 124.7 14.2 165 140-318 2-175 (177)
19 3ehh_A Sensor kinase (YOCF pro 99.5 2.4E-13 8.3E-18 125.5 14.7 149 342-505 26-177 (218)
20 3o5y_A Sensor protein; GAF dom 99.5 1.1E-13 3.6E-18 121.9 11.4 156 155-326 2-160 (165)
21 3ci6_A Phosphoenolpyruvate-pro 99.5 5.5E-13 1.9E-17 117.1 15.2 164 139-316 5-170 (171)
22 3oov_A Methyl-accepting chemot 99.4 1.7E-12 5.9E-17 114.1 15.8 158 144-315 2-168 (169)
23 2lb5_A Sensor histidine kinase 99.4 3.4E-13 1.2E-17 123.7 9.8 169 133-315 5-203 (208)
24 1ykd_A Adenylate cyclase; GAF 99.3 1.9E-11 6.6E-16 123.6 17.3 173 135-320 190-387 (398)
25 2vjw_A GAF-B, GAF family prote 99.3 2E-11 6.8E-16 105.5 14.4 135 158-317 1-142 (149)
26 1mc0_A 3',5'-cyclic nucleotide 99.3 5.4E-11 1.8E-15 118.9 18.0 165 142-320 12-177 (368)
27 2qyb_A Membrane protein, putat 99.3 1.3E-11 4.3E-16 110.1 11.7 161 144-318 3-167 (181)
28 3dba_A CONE CGMP-specific 3',5 99.3 8.5E-12 2.9E-16 111.6 9.6 153 141-307 4-171 (180)
29 1mc0_A 3',5'-cyclic nucleotide 99.3 1.4E-10 4.6E-15 116.0 19.1 169 136-319 173-347 (368)
30 3mmh_A FRMSR, methionine-R-sul 99.3 2.3E-10 7.8E-15 100.2 17.8 149 141-309 14-162 (167)
31 3ibj_A CGMP-dependent 3',5'-cy 99.3 6.7E-11 2.3E-15 128.2 17.6 175 139-328 176-356 (691)
32 2w3g_A DOSS, two component sen 99.2 4.3E-11 1.5E-15 103.0 11.5 146 155-316 3-152 (153)
33 3hcy_A Putative two-component 99.2 2.4E-11 8.3E-16 104.9 9.2 145 156-316 1-146 (151)
34 3cit_A Sensor histidine kinase 99.2 3.5E-10 1.2E-14 96.1 15.9 149 136-319 7-157 (160)
35 1ykd_A Adenylate cyclase; GAF 99.2 6.5E-10 2.2E-14 112.4 18.3 167 140-320 5-195 (398)
36 3ibj_A CGMP-dependent 3',5'-cy 99.2 2.1E-10 7.3E-15 124.3 15.0 165 141-320 12-177 (691)
37 1vhm_A Protein YEBR; structura 99.1 1.2E-09 4.2E-14 98.0 16.3 152 139-312 24-176 (195)
38 1b3q_A Protein (chemotaxis pro 99.1 1.9E-10 6.7E-15 115.1 10.8 138 343-502 9-163 (379)
39 2ool_A Sensor protein; bacteri 99.1 1.1E-09 3.8E-14 106.2 15.6 161 141-315 144-333 (337)
40 3nhq_A Bacteriophytochrome; ph 99.1 4.4E-09 1.5E-13 107.4 20.1 163 141-317 122-313 (505)
41 2k2n_A Sensor protein, SYB-CPH 99.1 7E-10 2.4E-14 98.1 11.7 140 160-313 2-171 (172)
42 4e04_A Bacteriophytochrome (li 99.1 2E-09 7E-14 103.1 15.6 154 143-310 133-315 (327)
43 3zq5_A Phytochrome-like protei 99.1 5.7E-09 2E-13 106.8 19.6 161 143-317 137-326 (520)
44 3s7o_A Bacteriophytochrome; bi 99.0 2.2E-09 7.4E-14 103.2 14.4 157 141-311 149-334 (343)
45 3rfb_A Putative uncharacterize 98.9 2E-08 7E-13 87.5 15.3 143 143-307 17-160 (171)
46 1f5m_A GAF; CGMP binding, sign 98.9 3.5E-08 1.2E-12 87.7 16.2 145 144-307 27-177 (180)
47 3ksh_A Putative uncharacterize 98.9 2.9E-08 1E-12 85.6 13.9 141 145-307 18-159 (160)
48 3eea_A GAF domain/HD domain pr 98.8 2.7E-08 9.4E-13 79.8 10.1 149 152-315 7-162 (162)
49 3a0y_A Sensor protein; ATP-LID 98.8 1.4E-08 4.8E-13 87.4 8.6 89 413-502 2-92 (152)
50 3bjc_A CGMP-specific 3',5'-cyc 98.8 7E-10 2.4E-14 123.2 0.0 173 137-322 146-332 (878)
51 1r62_A Nitrogen regulation pro 98.8 9.5E-09 3.2E-13 89.3 6.6 100 411-512 2-114 (160)
52 1id0_A PHOQ histidine kinase; 98.7 2E-08 6.9E-13 86.5 8.1 85 415-502 2-87 (152)
53 3bjc_A CGMP-specific 3',5'-cyc 98.7 1.4E-09 4.9E-14 120.7 0.0 176 136-323 326-522 (878)
54 4eho_A Bacteriophytochrome, PA 98.7 2.7E-07 9.2E-12 98.6 16.8 162 145-320 133-323 (635)
55 1ysr_A Sensor-type histidine k 98.6 2.8E-08 9.7E-13 85.4 5.4 87 412-502 3-90 (150)
56 1bxd_A ENVZ(290-450), protein 98.6 1E-07 3.5E-12 83.0 7.4 86 411-502 4-90 (161)
57 3sl2_A Sensor histidine kinase 98.6 3E-07 1E-11 81.4 10.2 87 416-504 2-92 (177)
58 3zxo_A Redox sensor histidine 98.5 2.2E-07 7.4E-12 77.5 6.7 85 415-503 3-87 (129)
59 3zcc_A HAMP, osmolarity sensor 98.4 1.2E-06 4.2E-11 70.8 10.1 62 337-403 53-114 (114)
60 3ehg_A Sensor kinase (YOCF pro 98.3 1.5E-06 5E-11 72.4 7.0 84 417-504 2-86 (128)
61 1i58_A Chemotaxis protein CHEA 98.2 1.8E-06 6.3E-11 77.1 6.2 89 414-502 2-104 (189)
62 3zxq_A Hypoxia sensor histidin 98.1 4.2E-06 1.4E-10 69.0 7.1 82 418-503 2-83 (124)
63 3zrx_A AF1503 protein, osmolar 97.9 4.1E-05 1.4E-09 61.6 9.2 58 342-404 58-115 (115)
64 4eu0_A PELD; C-DI-GMP, signali 96.4 0.019 6.4E-07 54.3 10.8 131 160-313 25-156 (298)
65 1th8_A Anti-sigma F factor; SP 95.8 0.0087 3E-07 50.2 4.8 48 455-502 35-87 (145)
66 1mu5_A Type II DNA topoisomera 95.1 0.0025 8.6E-08 64.8 -1.2 52 453-504 26-85 (471)
67 2zbk_B Type 2 DNA topoisomeras 95.1 0.0026 9E-08 65.5 -1.1 49 456-504 28-84 (530)
68 1ixm_A SPO0B, protein (sporula 94.9 0.33 1.1E-05 42.7 12.1 45 344-392 21-65 (192)
69 3e98_A GAF domain of unknown f 94.5 0.71 2.4E-05 42.4 13.7 149 132-308 91-242 (252)
70 2q2e_B Type 2 DNA topoisomeras 93.9 0.0096 3.3E-07 62.3 -0.1 53 453-505 31-89 (621)
71 1h7s_A PMS1 protein homolog 2; 91.5 0.092 3.1E-06 51.4 3.0 54 459-513 34-87 (365)
72 3na3_A DNA mismatch repair pro 90.6 0.058 2E-06 52.2 0.6 46 459-505 28-73 (348)
73 3h4l_A DNA mismatch repair pro 90.0 0.15 5E-06 49.9 2.9 52 459-511 25-76 (367)
74 1b63_A MUTL; DNA mismatch repa 85.7 0.53 1.8E-05 45.4 3.8 44 459-503 24-67 (333)
75 3ke6_A Protein RV1364C/MT1410; 79.9 1.3 4.6E-05 43.8 4.2 48 456-503 294-347 (399)
76 3nhq_A Bacteriophytochrome; ph 76.7 4.1 0.00014 41.4 6.7 51 135-185 311-361 (505)
77 3szt_A QCSR, quorum-sensing co 75.7 42 0.0014 30.0 12.8 142 147-304 6-153 (237)
78 2w1r_A Spovt, stage V sporulat 75.4 17 0.00056 29.0 8.8 117 164-307 5-121 (123)
79 1kij_A DNA gyrase subunit B; t 72.5 3 0.0001 41.0 4.4 49 454-505 31-79 (390)
80 3fv5_A DNA topoisomerase 4 sub 69.7 2.5 8.6E-05 37.3 2.8 43 461-505 19-64 (201)
81 3ttz_A DNA gyrase subunit B; p 67.2 3.1 0.00011 36.6 2.8 47 456-504 28-77 (198)
82 4a2l_A BT_4663, two-component 62.2 6.5 0.00022 42.5 4.8 70 220-291 696-772 (795)
83 3ott_A Two-component system se 61.4 4.3 0.00015 43.7 3.2 70 221-292 662-739 (758)
84 4duh_A DNA gyrase subunit B; s 59.3 6.3 0.00022 35.2 3.4 45 458-504 34-81 (220)
85 1ei1_A DNA gyrase B, GYRB; ATP 58.2 5.1 0.00018 39.3 2.8 45 459-505 34-81 (391)
86 3zq5_A Phytochrome-like protei 54.4 38 0.0013 34.4 8.6 49 137-185 326-374 (520)
87 4emv_A DNA topoisomerase IV, B 53.0 10 0.00036 33.9 3.7 50 456-505 37-87 (226)
88 3cwv_A DNA gyrase, B subunit, 51.7 7 0.00024 38.0 2.5 48 456-503 27-75 (369)
89 2lq0_A De novo designed antifr 49.0 12 0.00042 19.6 2.0 14 57-70 8-21 (26)
90 3v9f_A Two-component system se 48.2 11 0.00038 40.5 3.8 67 224-292 694-767 (781)
91 1s16_A Topoisomerase IV subuni 47.6 6.5 0.00022 38.6 1.6 43 461-505 33-78 (390)
92 4hkr_A Calcium release-activat 47.0 1.4E+02 0.0048 25.8 11.3 34 74-107 137-170 (214)
93 3rlb_A THIT; S-component, ECF 44.0 1.6E+02 0.0053 25.4 10.0 93 19-114 88-188 (192)
94 2wer_A ATP-dependent molecular 37.1 12 0.00039 33.4 1.4 15 462-476 29-43 (220)
95 2ior_A Chaperone protein HTPG; 35.1 17 0.00057 32.8 2.1 14 462-475 50-63 (235)
96 1zxm_A TOPO IIA ATPase, DNA to 34.4 24 0.00081 34.6 3.2 48 457-505 50-101 (400)
97 3ehh_A Sensor kinase (YOCF pro 34.3 45 0.0015 28.8 4.9 26 340-365 28-53 (218)
98 2avx_A Regulatory protein SDIA 34.1 2E+02 0.0067 23.7 11.4 111 147-258 11-127 (171)
99 3qp6_A CVIR transcriptional re 34.0 1.9E+02 0.0066 26.0 9.4 82 145-228 23-113 (265)
100 3lnu_A Topoisomerase IV subuni 32.1 31 0.0011 33.8 3.6 45 461-505 52-97 (408)
101 1qy5_A Endoplasmin; GRP94, NEC 29.9 22 0.00075 32.7 2.0 40 463-502 32-87 (269)
102 2ks1_B Epidermal growth factor 29.5 69 0.0023 20.3 3.6 18 30-47 21-39 (44)
103 3ghg_A Fibrinogen alpha chain; 26.3 5E+02 0.017 26.0 11.4 10 263-272 31-40 (562)
104 3ix3_A Transcriptional activat 24.5 2.9E+02 0.01 22.6 9.9 109 150-259 7-123 (173)
105 3vr8_C Cytochrome B-large subu 23.8 3.4E+02 0.012 23.2 11.5 24 11-34 65-88 (188)
106 1yc1_A HSP 86, heat shock prot 23.8 31 0.0011 31.6 1.8 41 462-502 71-127 (264)
107 2gqp_A Endoplasmin; GRP94, HSP 22.9 35 0.0012 30.6 2.0 14 462-475 35-48 (236)
108 2l81_A Enhancer of filamentati 21.8 2.3E+02 0.0079 23.9 6.6 43 364-406 39-82 (176)
109 2wdq_C Succinate dehydrogenase 21.7 3E+02 0.01 21.7 9.1 21 11-31 20-40 (129)
110 1pvg_A DNA topoisomerase II; G 20.5 58 0.002 32.0 3.1 47 458-505 63-113 (418)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.87 E-value=1.9e-21 Score=185.60 Aligned_cols=174 Identities=24% Similarity=0.338 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 010147 336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL 412 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l 412 (517)
++++..+.+.+|++++|||+||||++|.++++++.+. ...++.+++++.+.++++++..++++++++++++.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 3445556688999999999999999999999998754 2344567899999999999999999999999999888888
Q ss_pred ccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEcC
Q 010147 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAK 488 (517)
Q Consensus 413 ~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~----g~i~i~~~~~~ 488 (517)
..+++|+.+++++++..+...+..+++.+.++.+...+..+.+|+..+.||+.||+.||+||++. +.|.+.+...+
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~ 171 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence 88999999999999999999999999999888764545557889999999999999999999864 34666655443
Q ss_pred CCc-cccCCCCCCCCCCCCCce
Q 010147 489 PES-LSDWRPPEFYPVSTDGHF 509 (517)
Q Consensus 489 ~~~-~~~~~~~~~~~~~~~~~~ 509 (517)
+.. +.+.++|+|+|.....++
T Consensus 172 ~~~~i~V~D~G~Gi~~~~~~~i 193 (258)
T 2c2a_A 172 GGVLIIVEDNGIGIPDHAKDRI 193 (258)
T ss_dssp TEEEEEEEECSSCCCGGGTTGG
T ss_pred CeEEEEEEecCCCCCHHHHHhh
Confidence 322 335566766654443333
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.84 E-value=1.2e-19 Score=173.88 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 010147 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE 411 (517)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~ 411 (517)
..+++++..+.+.+|++.++||+||||+.|.++++++.+. ..+++.+++++.+.+.++++..++++++++++.+.+...
T Consensus 29 ~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~ 108 (268)
T 4ew8_A 29 RSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMA 108 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 3344455566678999999999999999999999999875 467788899999999999999999999999999988888
Q ss_pred cccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEcCCC
Q 010147 412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPE 490 (517)
Q Consensus 412 l~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~-g~i~i~~~~~~~~ 490 (517)
+..+++++.+++++++..+...+..+++.+.++.+++.+. +.+|+..|.+|+.||+.||+||++. |.|.|.+...++.
T Consensus 109 ~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~ 187 (268)
T 4ew8_A 109 LEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGE 187 (268)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEECSSE
T ss_pred eeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCce-EecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEecCCE
Confidence 8899999999999999999999989999999998877664 8899999999999999999999985 7888877765433
Q ss_pred c-cccCCCCCCCC
Q 010147 491 S-LSDWRPPEFYP 502 (517)
Q Consensus 491 ~-~~~~~~~~~~~ 502 (517)
. +.+.++|.+++
T Consensus 188 ~~i~V~D~G~Gi~ 200 (268)
T 4ew8_A 188 VRLDVSDTGRGVP 200 (268)
T ss_dssp EEEEEEESSCCCC
T ss_pred EEEEEEcCCCCCC
Confidence 2 33445555443
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.79 E-value=1.1e-19 Score=168.76 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccHHHH
Q 010147 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (517)
Q Consensus 344 ~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l~~l 422 (517)
+.+|++.++||+||||++|.++++++..... +++.+++++.+.++++++..++++++++++.+.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 3579999999999999999999999876543 344577888899999999999999999999998888888899999999
Q ss_pred HHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEcCCCccccCCCCCCC
Q 010147 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (517)
Q Consensus 423 i~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~~~~~ 501 (517)
+++++..+...+..+++.+.++.+++.+ .+.+|+..+.+|+.||+.||+||+++| .|.|.+... .+.+.++|.++
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~~---~i~V~D~G~Gi 157 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD---NFIVRDNGPGV 157 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECSS---EEEEECSCC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccC---eEEEEECCCCC
Confidence 9999999999999999999999877754 478899999999999999999999754 555555322 26667888877
Q ss_pred CCCCCCceEEEE
Q 010147 502 PVSTDGHFYLRV 513 (517)
Q Consensus 502 ~~~~~~~~~~~~ 513 (517)
+......+|.+|
T Consensus 158 ~~~~~~~if~~f 169 (222)
T 3jz3_A 158 TPEALARIGERF 169 (222)
T ss_dssp ------------
T ss_pred CHHHHHHHHhhh
Confidence 766555555544
No 4
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.76 E-value=4e-18 Score=169.70 Aligned_cols=159 Identities=21% Similarity=0.258 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccHH
Q 010147 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (517)
Q Consensus 342 ~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l~ 420 (517)
+.+++|++.++||+||||+.|.++++++.+.. .+++..++++.+.++++++..++++++++++.. ..+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCHH
Confidence 34788999999999999999999999998763 334567899999999999999999999999943 35667899999
Q ss_pred HHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCc-cccCCCC
Q 010147 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES-LSDWRPP 498 (517)
Q Consensus 421 ~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~-~~~~~~~ 498 (517)
+++++++..+...+..+++.+.++.+++.+ .+.+|+..+.||+.||++||+||++ +|.|.|.+...++.- +.+.++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G 285 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSG 285 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECC
Confidence 999999999999988899999998876654 4889999999999999999999995 688888877654332 3344666
Q ss_pred CCCCCC
Q 010147 499 EFYPVS 504 (517)
Q Consensus 499 ~~~~~~ 504 (517)
.++|..
T Consensus 286 ~Gi~~~ 291 (349)
T 3a0r_A 286 PPIPEE 291 (349)
T ss_dssp CCCCGG
T ss_pred CCCChH
Confidence 665543
No 5
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.73 E-value=1.1e-17 Score=169.04 Aligned_cols=170 Identities=9% Similarity=-0.017 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccc
Q 010147 339 KAIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (517)
Q Consensus 339 ~~~~~~~~~~~~iaHelrnPL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~ 417 (517)
+.++.+.+|++.++||+||||+.|. ++.+++.....+++.+++++.+.++..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 3455788999999999999999998 666665544557778999999999999999999999999999988888888999
Q ss_pred cHHHHHHHHHHHHhhhhhcC---CcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC---------eEEEEEE
Q 010147 418 NLQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIAS 485 (517)
Q Consensus 418 ~l~~li~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g---------~i~i~~~ 485 (517)
|+.+++++++..+...+..+ .+.++++.+.+. .+.+|+..|.||+.||++||+||+++| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~--~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA--RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC--CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC--ceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999988777 334444444432 477899999999999999999998754 6888776
Q ss_pred EcCCCc-cccCCCCCCCCCCCCCceE
Q 010147 486 VAKPES-LSDWRPPEFYPVSTDGHFY 510 (517)
Q Consensus 486 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 510 (517)
..++.- +.+.++|.|+|...-.++|
T Consensus 274 ~~~~~v~i~V~D~G~GI~~~~~~~iF 299 (388)
T 1gkz_A 274 NNDVDLIIRISDRGGGIAHKDLDRVM 299 (388)
T ss_dssp ECSSEEEEEEECCSCCCCTTTTTTTT
T ss_pred eCCCEEEEEEEEeCCCcCHHHHHHhc
Confidence 544322 4455777777655444443
No 6
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.70 E-value=8.4e-17 Score=151.56 Aligned_cols=155 Identities=17% Similarity=0.315 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccH
Q 010147 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (517)
Q Consensus 341 ~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~-~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l 419 (517)
.+.+++|++.++||+||||+.|.++++++.+...+ ++.+++++.+.+.++++..++++++++++.+.+ ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 34578899999999999999999999999876544 457789999999999999999999999986643 4568999
Q ss_pred HHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCc-cccCCC
Q 010147 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES-LSDWRP 497 (517)
Q Consensus 420 ~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~-~~~~~~ 497 (517)
..++++++..+...+..+++.+..+.++ + .+.+|+..+.+++.||+.||+||++ +|.|.|.+...++.. +.+.++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~ 163 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP--F-SVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADT 163 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC--C-EEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC--c-eEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEec
Confidence 9999999999999998889988887644 3 4788999999999999999999995 567777777654322 334455
Q ss_pred CCCCC
Q 010147 498 PEFYP 502 (517)
Q Consensus 498 ~~~~~ 502 (517)
|.+.+
T Consensus 164 G~gi~ 168 (244)
T 3d36_A 164 GVGMT 168 (244)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 55443
No 7
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.70 E-value=1.5e-16 Score=150.41 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccHHHHHHHH
Q 010147 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (517)
Q Consensus 347 ~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l~~li~~~ 426 (517)
++++|||||||||++|.+++++|.+...++..+++++.|.++++++..+++ ++|+..+. ....+++++.++.+.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~----~~r~~~~~-~~~~~~~~~~~l~~~- 122 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQ----FTRVAFGA-SASAENFDSRELEKL- 122 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHTTC-CSSCCCEEHHHHHHH-
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc-ccccccccHHHHHHH-
Confidence 788999999999999999999999877777778889999999998887764 44443222 334457787765443
Q ss_pred HHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEcCCCc-cccCCCCCCCCC
Q 010147 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPES-LSDWRPPEFYPV 503 (517)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~-g~i~i~~~~~~~~~-~~~~~~~~~~~~ 503 (517)
+......+++++..+.++. . .+..+.|++.||+.||+||+|. |.|+|.+...++.. +.+.+.|++++.
T Consensus 123 ---~~~~~~~~~i~l~~~~~~~----~--~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i 192 (247)
T 4fpp_A 123 ---AQGVFAHVRPTLDWQIEPQ----A--MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARL 192 (247)
T ss_dssp ---HHHHHTTSSSEEEECCCSC----E--ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCC
T ss_pred ---HHHHHHhhhhhccccccch----h--hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCC
Confidence 3344456778777654332 2 3567899999999999999985 67888887665442 345566666543
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.68 E-value=5.2e-17 Score=165.07 Aligned_cols=156 Identities=12% Similarity=0.116 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcC----C
Q 010147 344 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 408 (517)
Q Consensus 344 ~~~~~~~iaHelrn-----PL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~rl~~li~~ll~~sr~~~----~ 408 (517)
+..|++.+ ||||| ||+.|.|+++++.....+ ++.+++++. +.+.+.|| ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 45676666 99999 999999999988764322 345678887 77888999 9999999999865 2
Q ss_pred ---CcccccccccHHHHHHHHHHHHhhhhhcC-----CcEEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 010147 409 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (517)
Q Consensus 409 ---~~~l~~~~~~l~~li~~~~~~~~~~~~~~-----~i~i~~~~--~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g 478 (517)
......+++|+.+++++++..+...+..+ ++.+.++. .++.+..+.+|+.+|.||+.||+.||+||+++|
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677889999999999999999988776 88888876 122334588999999999999999999998754
Q ss_pred --------eEEEEEEEcCCCc-cccCCCCCCCC
Q 010147 479 --------YVSIIASVAKPES-LSDWRPPEFYP 502 (517)
Q Consensus 479 --------~i~i~~~~~~~~~-~~~~~~~~~~~ 502 (517)
.|.|.+...++.- +.+.++|.|+|
T Consensus 263 ~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 295 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVP 295 (407)
T ss_dssp STTTCCCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred cccCCCCCCEEEEEEeCCCEEEEEEEecCCCCC
Confidence 4888776544322 33456666554
No 9
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.68 E-value=9.1e-17 Score=162.54 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHh-----HHHHHHHHHHHHhcC----CCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HhhhcCCCcccc
Q 010147 346 DFRAVMNHEMRT-----LMHAIIALSSLLLET----DLTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (517)
Q Consensus 346 ~~~~~iaHelrn-----PL~~I~~~~~~l~~~----~~~~~~~~~l~--~i~~~~~rl~~li~~ll~-~sr~~~~~~~l~ 413 (517)
++...++||||| ||+.|.|+++++.+. ...++.+++++ .+.+.+.|| +++++++ +++. .+..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356677899999 999999999977653 24566788899 699999999 9999998 6766 5666666
Q ss_pred c----ccccHHHHHHHHHHHHhhhhhcC-----CcEEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 010147 414 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (517)
Q Consensus 414 ~----~~~~l~~li~~~~~~~~~~~~~~-----~i~i~~~~--~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~--- 479 (517)
. +++|+.+++++++..+...+..+ ++.+.++. .+..+..+.+|+..|.||+.||++||+||+++|+
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 79999999999999999988877 88888753 2233345889999999999999999999987543
Q ss_pred -----EEEEEEEcCCC-ccccCCCCCCCCC
Q 010147 480 -----VSIIASVAKPE-SLSDWRPPEFYPV 503 (517)
Q Consensus 480 -----i~i~~~~~~~~-~~~~~~~~~~~~~ 503 (517)
|.|.+...++. .+.+.++|.|+|.
T Consensus 254 ~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~ 283 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKEDLTIKISDRGGGVPL 283 (394)
T ss_dssp SSCCCEEEEEEECSSEEEEEEEECSCCCCG
T ss_pred CCCCCEEEEEEeCCCEEEEEEEeCCCCcCH
Confidence 88877654432 2335566666553
No 10
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.67 E-value=1.2e-15 Score=137.36 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccc
Q 010147 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (517)
Q Consensus 125 ~~~~l~~~~~~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~ 204 (517)
...++++..+++++++++++.++++++.++++.|++++++.+++.+.+.+++++|.+++.+++. .......+......+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~-~~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQT-LSTIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTE-EEEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCc-eeeeeeeccccCccC
Confidence 4567888888999999999999999999999999999999999999999999999999995433 222233233222222
Q ss_pred cccccCCchhHHHhhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCC
Q 010147 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (517)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 284 (517)
..++ .++.+..++.+++++.++|...++++.........+.++.+++||...+ ..+|++.+.+..
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~--------------~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRN--------------EMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETT--------------EEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECC--------------EEEEEEEeCcCC
Confidence 2344 4788999999999999998887776553211122356788899975444 458888888888
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHH
Q 010147 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (517)
Q Consensus 285 ~~~~~~~e~~ll~~va~qva~al~~a~l 312 (517)
++.|+++|+++++.+|+|+|+||+||+.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999863
No 11
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.65 E-value=1.6e-15 Score=153.42 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHh-----HHHHHHHHHHHHhcCCCCH----HHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcC-CCcccc
Q 010147 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTP----EQRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (517)
Q Consensus 346 ~~~~~iaHelrn-----PL~~I~~~~~~l~~~~~~~----~~~~~l~--~i~~~~~rl~~li~~ll~~sr~~~-~~~~l~ 413 (517)
++.+.++||||| ||+.|.|+++++.+...++ +.+++++ .+.+.+.|| ++++++++++.+. +..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 367778899999 9999999999987654333 3445777 488889999 9999999999876 455666
Q ss_pred c----ccccHHHHHHHHHHHHhhhhhc-----CCcEEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 010147 414 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (517)
Q Consensus 414 ~----~~~~l~~li~~~~~~~~~~~~~-----~~i~i~~~~--~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~--- 479 (517)
. +++|+.+++++++..+...+.. +++.+.+.. .+..+..+.+|+..|.||+.||++||+||+++|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8999999999999999998876 888888744 1223345889999999999999999999997654
Q ss_pred -----EEEEEEEcCCCc-cccCCCCCCCC
Q 010147 480 -----VSIIASVAKPES-LSDWRPPEFYP 502 (517)
Q Consensus 480 -----i~i~~~~~~~~~-~~~~~~~~~~~ 502 (517)
|.|.+...++.- +.+.++|.|+|
T Consensus 255 ~~~~~I~I~~~~~~~~v~i~V~D~G~GI~ 283 (394)
T 2btz_A 255 LILPPIKVMVALGEEDLSIKMSDRGGGVP 283 (394)
T ss_dssp SCCCCEEEEEEECSSEEEEEEEECSCCCC
T ss_pred CCCCCEEEEEEeCCCEEEEEEEeCCCCCC
Confidence 888776544321 33556666554
No 12
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.61 E-value=1.1e-15 Score=155.85 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhc-CCCcc
Q 010147 344 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDL----TPEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 411 (517)
Q Consensus 344 ~~~~~~~iaHelrnPL~-----~I~~~~~~l~~~~~----~~~~~~~l~~i~~~--~~rl~~li~~ll~~sr~~-~~~~~ 411 (517)
+.+|++ ++|||||||+ .|.|+++++.+... +++.+++++.+..+ +.|+ ++++++..++.. .+..+
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 456765 5599999999 88999998765322 34456788886655 7888 999997666543 23323
Q ss_pred c----ccccccHHHHHHHHHHHHhhhhhc-----CCcEEEEEeC--CCCCceEEccHHHHHHHHHHHHHHHhhcCCCC--
Q 010147 412 L----DNGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-- 478 (517)
Q Consensus 412 l----~~~~~~l~~li~~~~~~~~~~~~~-----~~i~i~~~~~--~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g-- 478 (517)
. ..+++|+.+++++++..++..+.. +++.+.+... ++.+..+.+|+.+|.||+.||++||+||+++|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 337999999999999999888765 7888876432 12334588999999999999999999998754
Q ss_pred -------eEEEEEEEcCCC-ccccCCCCCCCCC
Q 010147 479 -------YVSIIASVAKPE-SLSDWRPPEFYPV 503 (517)
Q Consensus 479 -------~i~i~~~~~~~~-~~~~~~~~~~~~~ 503 (517)
.|.|.+...++. .+.+.++|.|+|.
T Consensus 275 ~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~ 307 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPL 307 (419)
T ss_dssp TCSSCCCCEEEEEEECSSEEEEEEEECSCCCCH
T ss_pred ccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCH
Confidence 477777654432 2335566666553
No 13
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.58 E-value=3.6e-14 Score=125.28 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=134.7
Q ss_pred HHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc--cccccccccCCchhHHH
Q 010147 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTDV 217 (517)
Q Consensus 140 ~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 217 (517)
.+.++.++++++.+.++.|++++++.+++.+.+.+++++|.+|+.|+++..+......+.. ......++...+.+.++
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 3456779999999999999999999999999999999999999999988777776665533 22233577788999999
Q ss_pred hhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHH
Q 010147 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (517)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~ 297 (517)
+.+++++.+++...++.+.........+..+.+++|+...+ ..+|++.+.+..++.|+++|+++++
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~--------------~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQG--------------ELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETT--------------EEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECC--------------EEEEEEEEeecCCCCCCHHHHHHHH
Confidence 99999999998877666553333334667888899975443 4588888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010147 298 VVADQVAVALSHAAILEDSMR 318 (517)
Q Consensus 298 ~va~qva~al~~a~l~~~~~~ 318 (517)
.+|++++.||+|+++++++++
T Consensus 150 ~la~~~a~ai~~a~l~~~l~~ 170 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALEK 170 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 14
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.58 E-value=8.2e-15 Score=130.63 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=130.5
Q ss_pred HHHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCch
Q 010147 134 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI 213 (517)
Q Consensus 134 ~~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 213 (517)
++++++++++..++++++.+.++.|++++++.+++.+.+.+++++|.|++.|+++..+....++.........++.+.+.
T Consensus 5 ~~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (181)
T 3e0y_A 5 QRANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGI 84 (181)
T ss_dssp ------CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCe
Confidence 34555677788899999999999999999999999999999999999999998877555444444444444567778889
Q ss_pred hHHHhhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchh
Q 010147 214 VTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHEL 293 (517)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~ 293 (517)
+..++.+++++.+++...++.+.........+..+.+++||...+ ..+|++.+.+..++.|+++++
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~--------------~~iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 85 TGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKK--------------EVYGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp HHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSS--------------CEEEEEEEEESSCCCCCHHHH
T ss_pred eeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCC--------------eEEEEEEEeeCCCCCCCHHHH
Confidence 999999999999988777665543333334566788889975443 458888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 294 ELIDVVADQVAVALSHAAILEDSMR 318 (517)
Q Consensus 294 ~ll~~va~qva~al~~a~l~~~~~~ 318 (517)
++++.+|++++.+++|++++++.++
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~~~ 175 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASSRK 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877543
No 15
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.56 E-value=2.2e-14 Score=129.09 Aligned_cols=172 Identities=11% Similarity=0.085 Sum_probs=130.0
Q ss_pred HHHhHHHHhHHHHHHHHHHHccc-CHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEE-Eecc--------ccccc
Q 010147 135 LILTQEETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 204 (517)
Q Consensus 135 ~l~~~~~~~~~l~~l~~~i~~s~-d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~-~~~~--------~~~~~ 204 (517)
.++++.++.+.+.++++.+.++. |++++++.+++.+.+.+++++|.|++.|+++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 34566777888999999998874 99999999999999999999999999998877665432 1111 11334
Q ss_pred cccccCCchhHHHhhccCceeecCCCchhhhhhc-cCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecC
Q 010147 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (517)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ 283 (517)
..+|.+.+.+.+++.+++++.++|...++++... ......+..+.+++||... +..+|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~--------------~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSR--------------GSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEET--------------TEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEeccC--------------CeEEEEEEEEeC
Confidence 5677788999999999999999988777655421 1112245577888997533 345888888777
Q ss_pred CCC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 284 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 284 ~~~-~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~ 320 (517)
.++ .|+++|+++++.+|+++++||+|++++++.++.+
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~~ 187 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHSE 187 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655 9999999999999999999999999998866543
No 16
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.55 E-value=4.8e-14 Score=126.63 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=124.1
Q ss_pred HHhHHHHHHHHHH-HcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc---------cccccccccC
Q 010147 141 ETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPIN 210 (517)
Q Consensus 141 ~~~~~l~~l~~~i-~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~---------~~~~~~~~~~ 210 (517)
+..+.|.++++.+ ++++|++++++.+++.+.+.+++++|.||+.|+++..+......... ......+|..
T Consensus 10 e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (189)
T 2zmf_A 10 ELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIE 89 (189)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETT
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCC
Confidence 3345578888875 66789999999999999999999999999999988877655433221 1122346778
Q ss_pred CchhHHHhhccCceeecCCCchhhhhhcc-CCCCCCceeEEeeeeccccCccccCccccCccccEEEEEE-eecCCCCcc
Q 010147 211 LPIVTDVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLM-LPTDGGRKW 288 (517)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~-~~~~~~~~~ 288 (517)
.+...+++.+++++.+++...++.+.... .....+.++.+++|+...+. .+|++. .++..++.|
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~--------------~~Gvl~l~~~~~~~~f 155 (189)
T 2zmf_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGS--------------VIGVVQMVNKISGSAF 155 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTE--------------EEEEEEEEEETTSSSC
T ss_pred ccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCc--------------eeeEEEEEEcCCCCCc
Confidence 88999999999999999877765543221 12234456778888754443 366664 456678899
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 289 RDHELELIDVVADQVAVALSHAAILEDSMR 318 (517)
Q Consensus 289 ~~~e~~ll~~va~qva~al~~a~l~~~~~~ 318 (517)
+++|+++++.+|+|+|+||+|+++|+++++
T Consensus 156 ~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 156 SKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654
No 17
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.55 E-value=3.8e-14 Score=125.55 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=104.1
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCch----hHHHhhccCce
Q 010147 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI----VTDVFNSAQAM 224 (517)
Q Consensus 149 l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 224 (517)
.+..|++++|++++++++++++++.+++|||.||..++++....+......+.+.-.+...+.+. ....+..+++.
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 46789999999999999999999999999999999998876655555554443322222233322 34677888999
Q ss_pred eecCCCchhhhh-hccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEe-ecCCCCccccchhHHHHHHHHH
Q 010147 225 RLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHELELIDVVADQ 302 (517)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~-~~~~~~~~~~~e~~ll~~va~q 302 (517)
.++|........ ........+.++.+.+|+...++. +|++.+ ++..+|.|+++|+++++.+|+|
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vPi~~~~~l--------------~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQL--------------FGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEEEEETTEE--------------EEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEEEEECCEE--------------EEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 998875532111 111123456678888897655443 555554 5578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010147 303 VAVALSHAAILEDSMR 318 (517)
Q Consensus 303 va~al~~a~l~~~~~~ 318 (517)
+++||++|++|++.+.
T Consensus 148 l~iAi~qa~l~~~~~~ 163 (171)
T 4glq_A 148 GSLVLERLHFLEQTIA 163 (171)
T ss_dssp HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987543
No 18
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.55 E-value=6.2e-14 Score=124.73 Aligned_cols=165 Identities=12% Similarity=0.108 Sum_probs=127.5
Q ss_pred HHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEE-Eecccc---ccccccccCCchhH
Q 010147 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQI---QIGSSVPINLPIVT 215 (517)
Q Consensus 140 ~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~-~~~~~~---~~~~~~~~~~~~~~ 215 (517)
+..++.++++++.+.++.|++++++.+++.+.+.+++++|.|++.|+++..+.... .+.... .....+|..++.+.
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 45677899999999999999999999999999999999999999999888776531 212111 22345667888999
Q ss_pred HHhhccCceeecCCCchhhhhhc-----cCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCcccc
Q 010147 216 DVFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (517)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~ 290 (517)
+++.++++..++....++.+... ......+.++.+++||...+ ..+|++.+.+..++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~--------------~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGG--------------RVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETT--------------EEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEEECC--------------EEEEEEEEEECCCCCCCH
Confidence 99999999988433323333321 01223456788889975443 459999999888889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (517)
Q Consensus 291 ~e~~ll~~va~qva~al~~a~l~~~~~~ 318 (517)
+|+++++.+|+|+|+||+|+++|+++++
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
No 19
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.50 E-value=2.4e-13 Score=125.54 Aligned_cols=149 Identities=10% Similarity=0.038 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccH
Q 010147 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (517)
Q Consensus 342 ~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l 419 (517)
+.+.+++..++|++++||++|.++++.+.+. ..+++..+.++.+.+.++++...+++++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 3467899999999999999999999988753 3445567788888888888888887776432 25678
Q ss_pred HHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCc-cccCCCC
Q 010147 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES-LSDWRPP 498 (517)
Q Consensus 420 ~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~-~~~~~~~ 498 (517)
.+.+..+...+. ..++.+.++.+.+.+.....+...+.+|+.||+.||+||++.|.|.|.+...++.- +.+.++|
T Consensus 95 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G 170 (218)
T 3ehh_A 95 KDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDG 170 (218)
T ss_dssp HHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESS
T ss_pred HHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECC
Confidence 888887776664 56888888776655444456888899999999999999999899998887665432 4455778
Q ss_pred CCCCCCC
Q 010147 499 EFYPVST 505 (517)
Q Consensus 499 ~~~~~~~ 505 (517)
+|+|...
T Consensus 171 ~Gi~~~~ 177 (218)
T 3ehh_A 171 TFKGEEN 177 (218)
T ss_dssp CCCC---
T ss_pred cCCCCCC
Confidence 7777543
No 20
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.50 E-value=1.1e-13 Score=121.89 Aligned_cols=156 Identities=13% Similarity=0.225 Sum_probs=107.8
Q ss_pred cccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc---cccccccccCCchhHHHhhccCceeecCCCc
Q 010147 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (517)
Q Consensus 155 ~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (517)
..++++++++.+.+.+.+.++++++.+++.+++. +.+....+.. .+.+..+|..++.+..++++++++..+....
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~--L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~ 79 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANET--LKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDT 79 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTE--EEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCT
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCE--EEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccc
Confidence 3578999999999999999999999999998654 3443333322 2245567778899999999999998754443
Q ss_pred hhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 010147 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (517)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~ 311 (517)
...+.........+.++.+++||...+. .+|++.+.+..++.|+++++++++.+|+|+|+||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~S~l~vPL~~~~~--------------~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ 145 (165)
T 3o5y_A 80 QDNFYEKQYLAILDLKSILVIPIYSKNK--------------RVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVE 145 (165)
T ss_dssp TCCCTTHHHHHTTTCCEEEEEEEECSSC--------------EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHhhCCCEEEEeCeeECCE--------------EEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3233222222345678999999765544 48999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010147 312 ILEDSMRARNQLMEQ 326 (517)
Q Consensus 312 l~~~~~~~~~~l~~~ 326 (517)
+|++.++.++++++.
T Consensus 146 ly~~~~~~~~~~~~~ 160 (165)
T 3o5y_A 146 LYGQVLRSKQEWEDT 160 (165)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988777666543
No 21
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.49 E-value=5.5e-13 Score=117.08 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=128.9
Q ss_pred HHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc--cccccccccCCchhHH
Q 010147 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTD 216 (517)
Q Consensus 139 ~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 216 (517)
++++++.++++++.+.++.+.+++++.+++.+.+.+++++|.+++.|+++..+......+.. ......++...+.+..
T Consensus 5 ~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 84 (171)
T 3ci6_A 5 SNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVGL 84 (171)
T ss_dssp CCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeehh
Confidence 45667789999999999999999999999999999999999999999887777766665533 2223456777889999
Q ss_pred HhhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHH
Q 010147 217 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 296 (517)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll 296 (517)
++.+++++.+++...++.+.........+..+.+++|+... +..+|++.+.+..++.|++++++++
T Consensus 85 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~--------------~~~~Gvl~l~~~~~~~f~~~~~~~l 150 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYR--------------RKVMGVLVVQNKQPQDFSEAAESFL 150 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHH
T ss_pred hhccCceEEecCCCcCcchhccccccccccceEEEEeEEEC--------------CEEEEEEEEecCCCCCCCHHHHHHH
Confidence 99999999998877665544322223344677888887543 3458888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010147 297 DVVADQVAVALSHAAILEDS 316 (517)
Q Consensus 297 ~~va~qva~al~~a~l~~~~ 316 (517)
+.+|++++.+++|+++++++
T Consensus 151 ~~la~~~a~al~~~~l~~~l 170 (171)
T 3ci6_A 151 VTLCAQLSGVIAHAHAVGNI 170 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988753
No 22
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.45 E-value=1.7e-12 Score=114.06 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccc--cccccccc--CCchhHHHhh
Q 010147 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (517)
Q Consensus 144 ~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~ 219 (517)
+.++++++.+.++.|++++++.+++.+.+.+++++|.+++.|+++..+......+... .....++. ..+.+.+++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4588999999999999999999999999999999999999999888887777666432 23444555 5788899999
Q ss_pred ccCceeecCCCchhhhhhc----cCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCC-CCccccchhH
Q 010147 220 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELE 294 (517)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~e~~ 294 (517)
+++++.+++...++..... ......+..+.+++||... +..+|++++.+.. ++.|+++|++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~--------------~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVK--------------GEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEET--------------TEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeC--------------CcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999987776543311 1122345677888887543 3458888888765 4569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010147 295 LIDVVADQVAVALSHAAILED 315 (517)
Q Consensus 295 ll~~va~qva~al~~a~l~~~ 315 (517)
+++.+|+++++||+|++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999874
No 23
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.43 E-value=3.4e-13 Score=123.66 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=93.6
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecc-cc--cccccccc
Q 010147 133 MGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QI--QIGSSVPI 209 (517)
Q Consensus 133 ~~~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~-~~--~~~~~~~~ 209 (517)
...++++.++++.++++++.++++.|++++++.+++.+.+.+++|+|.||+.|+++....+...... .. ..+..+|.
T Consensus 5 ~~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (208)
T 2lb5_A 5 TWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPA 84 (208)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEG
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCCh
Confidence 3456677788889999999999999999999999999999999999999999987765444444332 11 12222232
Q ss_pred CC--chhHHH------------------------hhccCceeecCCCchhhhhh-ccCCCCCCceeEEeeeeccccCccc
Q 010147 210 NL--PIVTDV------------------------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQI 262 (517)
Q Consensus 210 ~~--~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~ 262 (517)
.+ ...... ..+++++.+++......... .......+.++.+++||...+.
T Consensus 85 ~~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~--- 161 (208)
T 2lb5_A 85 GDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQE--- 161 (208)
T ss_dssp GGCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTE---
T ss_pred hhCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCE---
Confidence 11 111122 33344444444332211110 0011134567888888765444
Q ss_pred cCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010147 263 NDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (517)
Q Consensus 263 ~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~ 315 (517)
.+|++.+.+..++.|+++|+++++.+|+++|+||+|+++|+.
T Consensus 162 -----------l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 162 -----------LWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -----------EEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------eEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888789999999999999999999999999998864
No 24
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.34 E-value=1.9e-11 Score=123.61 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=132.0
Q ss_pred HHHhHHHHhHHHHHHHHHHHc-ccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCch
Q 010147 135 LILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI 213 (517)
Q Consensus 135 ~l~~~~~~~~~l~~l~~~i~~-s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 213 (517)
+.+++.++++.+.++++.+.. +.+++++++.+++.+.+.+++++|.||+.|+++..+...............+|.+.+.
T Consensus 190 ~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (398)
T 1ykd_A 190 IATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGF 269 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCch
Confidence 344456667789999999999 9999999999999999999999999999999887776665533332334457778889
Q ss_pred hHHHhhccCceeec-CCCchhhhhhc--c-CCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCC-----
Q 010147 214 VTDVFNSAQAMRLP-YNCPLARIRLL--V-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG----- 284 (517)
Q Consensus 214 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~----- 284 (517)
+..++.+++++.++ |...++.+... . .....+.++.+++||.. .++..+|++.+.+..
T Consensus 270 ~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~~~~iGvl~l~~~~~~~~~ 336 (398)
T 1ykd_A 270 AGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN-------------GDQELIGVTQLVNKKKTGEF 336 (398)
T ss_dssp HHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEEC-------------SSSCEEEEEEEEEECCSSCC
T ss_pred hhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeec-------------CCCCEEEEEEEEecCCcccc
Confidence 99999999999999 87766554422 0 11123467788999753 123357777766655
Q ss_pred ---------------CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 285 ---------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 285 ---------------~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~ 320 (517)
++.|+++|+++++.+|.++++||+|+++|++.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~~ 387 (398)
T 1ykd_A 337 PPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQE 387 (398)
T ss_dssp CCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998876543
No 25
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.33 E-value=2e-11 Score=105.45 Aligned_cols=135 Identities=20% Similarity=0.182 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHhhhCCceeEEEccCCCC----CeEEEEEEecc--ccccccccccCCchhHHHhhccCceeecCCCc
Q 010147 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLNN--QIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (517)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (517)
|++++++.+++.+.+.+++++|.|+++++++ ..+.+....+. ....+..++.+++++..++.+++++.++|...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678999999999999999999999998765 55665544443 23345678888999999999999999998765
Q ss_pred hhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecC-CCCccccchhHHHHHHHHHHHHHHHHH
Q 010147 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (517)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~e~~ll~~va~qva~al~~a 310 (517)
++ +.++.+++||...+ ..+|++.+.+. .++.|+++|+++++.+|+|+++||+|+
T Consensus 81 d~-----------~~~s~l~vPL~~~~--------------~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLPLRATD--------------TVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEEEEETT--------------EEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEEEccCC--------------eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 46788899975433 45888888877 788999999999999999999999999
Q ss_pred HHHHHHH
Q 010147 311 AILEDSM 317 (517)
Q Consensus 311 ~l~~~~~ 317 (517)
+++++.+
T Consensus 136 ~~~~~~~ 142 (149)
T 2vjw_A 136 SSQRRMS 142 (149)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9887643
No 26
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.31 E-value=5.4e-11 Score=118.90 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=125.9
Q ss_pred HhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhcc
Q 010147 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (517)
Q Consensus 142 ~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (517)
..+.+.++++.+ +++|++++++.+++.+.+.+++++|.||+.|+++..+......+........+|.+.+.+..++.++
T Consensus 12 ~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~ 90 (368)
T 1mc0_A 12 HDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDK 90 (368)
T ss_dssp HHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHC
T ss_pred chHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcC
Confidence 345688899999 8999999999999999999999999999999888776655544322222345677888999999999
Q ss_pred CceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEee-cCCCCccccchhHHHHHHH
Q 010147 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRKWRDHELELIDVVA 300 (517)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~~~~~~~~~e~~ll~~va 300 (517)
+++.++|...+++... ......+.++.+++|+...+ ++..+|++.+. +..++.|+++|.++++.++
T Consensus 91 ~~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl~~~~------------~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la 157 (368)
T 1mc0_A 91 QCIQLKDLTSDDVQQL-QNMLGCELQAMLCVPVISRA------------TDQVVALACAFNKLGGDFFTDEDEHVIQHCF 157 (368)
T ss_dssp CCEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEEECTT------------TCSEEEEEEEEEESSCSSCCSHHHHHHHHHH
T ss_pred CeEEeccccccccccc-ccccCcccceEEEEEeecCC------------CCcEEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 9999999887765221 11122346788889975440 13357777744 4556679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010147 301 DQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 301 ~qva~al~~a~l~~~~~~~~ 320 (517)
.+++.++++++++++.++.+
T Consensus 158 ~~~~~al~~~~l~~~~~~~~ 177 (368)
T 1mc0_A 158 HYTGTVLTSTLAFQKEQKLK 177 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766543
No 27
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.30 E-value=1.3e-11 Score=110.14 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc--cc-cccccccCCchhHHHhhc
Q 010147 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQ-IGSSVPINLPIVTDVFNS 220 (517)
Q Consensus 144 ~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 220 (517)
..++++++.+.++.|++++++.+++.+.+.++++.|.|++.++++ .+......+.. .. .....+..++.+..++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 357889999999999999999999999999999999999995443 44443333322 11 112233356789999999
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeec-CCCCccccchhHHHHHH
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVV 299 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~-~~~~~~~~~e~~ll~~v 299 (517)
++++.+++...++...........+..+.+++||...++ ..+|++.+.+ ..++.|+++++++++.+
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~-------------~~~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGE-------------PPFGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTS-------------CCCEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCC-------------eEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 999999887655432211111123567788889754444 1478888887 77889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010147 300 ADQVAVALSHAAILEDSMR 318 (517)
Q Consensus 300 a~qva~al~~a~l~~~~~~ 318 (517)
|.+++.||++++.+++..+
T Consensus 149 a~~~a~al~~a~~~~~~~~ 167 (181)
T 2qyb_A 149 AGQLAQAVKIVTEMEAKER 167 (181)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999976655433
No 28
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.28 E-value=8.5e-12 Score=111.57 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=118.7
Q ss_pred HHhHHHHHHHHHHHccc-CHHHHHHHHHHHHHhhhCCceeEEEccCCCCC--eEEEEE-E--eccc-------ccccccc
Q 010147 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSY-T--LNNQ-------IQIGSSV 207 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~-d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~l~~~~-~--~~~~-------~~~~~~~ 207 (517)
++++.+.++++.+.++. |++++++.+++.+.+.+++++|.+++.|+++. .+.... . .+.. ......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 45677999999999999 99999999999999999999999999998654 333221 1 1111 1223467
Q ss_pred ccCCchhHHHhhccCceeecCCCchhhhhhccCC-CCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCC-
Q 010147 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 285 (517)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~- 285 (517)
|.+.+++++++++++++.++|...++++...... .....++.+++||...+ ..+||+.+.+..+
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~--------------~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGK--------------EVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETT--------------EEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccCC--------------EEEEEEEEEeCCCC
Confidence 8889999999999999999998888776532111 12345788999975543 4588888876654
Q ss_pred CccccchhHHHHHHHHHHHHHH
Q 010147 286 RKWRDHELELIDVVADQVAVAL 307 (517)
Q Consensus 286 ~~~~~~e~~ll~~va~qva~al 307 (517)
..|+++|+++++.+|+++|++|
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998
No 29
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.28 E-value=1.4e-10 Score=115.96 Aligned_cols=169 Identities=11% Similarity=0.080 Sum_probs=127.7
Q ss_pred HHhHHHHhHHHHHHHHHHHcc-cCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEec---cccccccccccCC
Q 010147 136 ILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN---NQIQIGSSVPINL 211 (517)
Q Consensus 136 l~~~~~~~~~l~~l~~~i~~s-~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 211 (517)
.++++++++.+.++++.+.++ .|++++++.+++.+.+.+++++|.+++.|+ ..+......+ .....+..+|...
T Consensus 173 ~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~ 250 (368)
T 1mc0_A 173 EQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQ 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS--SSEEEEEETTEECCCSTTCCEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeC--CceEEEEeccccccccccceeecCCC
Confidence 334566678899999999999 699999999999999999999999999998 3343333322 2223345677788
Q ss_pred chhHHHhhccCceeecCCCchhhhhhccCC-CCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCC-Cccc
Q 010147 212 PIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWR 289 (517)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~ 289 (517)
+.+..++.+++++.+++...++.+...... .....++.+++||... ++..+|++.+.+..+ +.|+
T Consensus 251 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~~~~iGvl~l~~~~~~~~f~ 317 (368)
T 1mc0_A 251 GIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFS 317 (368)
T ss_dssp HHHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECT-------------TSCEEEEEEEEEETTSSSCC
T ss_pred ceeeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECC-------------CCcEEEEEEEEECCCCCCCC
Confidence 899999999999999988776655421110 0112467888897543 133578887776655 4899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 290 DHELELIDVVADQVAVALSHAAILEDSMRA 319 (517)
Q Consensus 290 ~~e~~ll~~va~qva~al~~a~l~~~~~~~ 319 (517)
++|+++++.+|.++++||+|++++++.++.
T Consensus 318 ~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 347 (368)
T 1mc0_A 318 KFDEDLATAFSIYCGISIAHSLLYKKVNEA 347 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887653
No 30
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.27 E-value=2.3e-10 Score=100.18 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=124.5
Q ss_pred HHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhc
Q 010147 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (517)
.....+.++...+..+.|+++.++.++..+.+.+++++|.+|+.|+++..+.+....+. +....++.+.++++.++.+
T Consensus 14 ~~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~~~~~i~~geGi~G~v~~~ 91 (167)
T 3mmh_A 14 LYREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--LACTRIPFGRGVCGQAWAK 91 (167)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--CCCSEEETTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--ccceEeccCCChHHHHHhC
Confidence 33456788888889999999999999999999999999999999988888776665553 2345788899999999999
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHH
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va 300 (517)
++++.++|...++++.. .....++.+++|+... +..+||+.+.+..++.|+++|.++++.+|
T Consensus 92 g~~~~v~Dv~~~p~~~~----~~~~~~S~i~vPi~~~--------------g~viGVL~i~s~~~~~F~~~d~~~L~~lA 153 (167)
T 3mmh_A 92 GGTVVVGDVDAHPDHIA----CSSLSRSEIVVPLFSD--------------GRCIGVLDADSEHLAQFDETDALYLGELA 153 (167)
T ss_dssp TSCEEESCGGGSTTCCC----SSTTCCEEEEEEEEET--------------TEEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCcccCcchhh----cCccCCeEEEEEeccC--------------CEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999999988876532 2346788899997543 34699999999888899999999999999
Q ss_pred HHHHHHHHH
Q 010147 301 DQVAVALSH 309 (517)
Q Consensus 301 ~qva~al~~ 309 (517)
++++.++..
T Consensus 154 ~~la~~i~~ 162 (167)
T 3mmh_A 154 KILEKRFEA 162 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988743
No 31
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.27 E-value=6.7e-11 Score=128.25 Aligned_cols=175 Identities=11% Similarity=0.086 Sum_probs=130.9
Q ss_pred HHHHhHHHHHHHHHHHc-ccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecc---ccccccccccCCchh
Q 010147 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIV 214 (517)
Q Consensus 139 ~~~~~~~l~~l~~~i~~-s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 214 (517)
+.++++.+.++++.+.+ +.+++++++.+++.+.+.+++++|++++.|+ ..+......+. ....+..+|.+.+..
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS--SEEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC--CeEEEEeecCCcccccccceeccCCCCHH
Confidence 44667889999999999 7999999999999999999999999999997 33333322222 122344677888999
Q ss_pred HHHhhccCceeecCCCchhhhhhcc-CCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCC-CCccccch
Q 010147 215 TDVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHE 292 (517)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~e 292 (517)
++++.+++++.++|...++++.... .....+.++.+++||...+ +..+|++.+.+.. ++.|+++|
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~-------------g~viGVL~l~~~~~~~~f~~~d 320 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNEN-------------QEVIGVAELVNKINGPWFSKFD 320 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSS-------------SCCCEEEEEEEESSSSSCCTTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCC-------------CCEEEEEEEEECCCCCCCCHHH
Confidence 9999999999999988877663221 1112345688889975441 2346777666554 55899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 293 LELIDVVADQVAVALSHAAILEDSMRARNQLMEQNV 328 (517)
Q Consensus 293 ~~ll~~va~qva~al~~a~l~~~~~~~~~~l~~~~~ 328 (517)
+++++.+|.++|+||+|++++++.++..++.+...+
T Consensus 321 ~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~~e 356 (691)
T 3ibj_A 321 EDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANE 356 (691)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887655544433
No 32
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.24 E-value=4.3e-11 Score=103.05 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=110.8
Q ss_pred cccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccc--ccc-cccccCCchhHHHhhccCceeecCCCc
Q 010147 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (517)
Q Consensus 155 ~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (517)
++.|++++++.+++.+.+.+++++|.+++.|++ ..+......+... ... ..++...+.+..++.+++++.+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 467889999999999999999999999999954 4555544444321 111 256667889999999999999998776
Q ss_pred hhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCC-CccccchhHHHHHHHHHHHHHHHHH
Q 010147 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (517)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~e~~ll~~va~qva~al~~a 310 (517)
++.+..... ...+..+.+++||... +..+|++.+.+..+ +.|+++|+++++.+|++++.||+|+
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vPl~~~--------------~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVPVRVR--------------DESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEEEEET--------------TEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEeeEEEC--------------CEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 665543222 3345677888897533 34588888877765 7999999999999999999999999
Q ss_pred HHHHHH
Q 010147 311 AILEDS 316 (517)
Q Consensus 311 ~l~~~~ 316 (517)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 998764
No 33
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.23 E-value=2.4e-11 Score=104.87 Aligned_cols=145 Identities=10% Similarity=0.024 Sum_probs=105.3
Q ss_pred ccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhccCceeecCCCchhhh
Q 010147 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (517)
Q Consensus 156 s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (517)
|.|++++++.+++.+.+.+++++|.|++.|+++ .+......+.+.... ..+...+.+..++.+++++.++|...++.+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 468899999999999999999999999999887 665555544321111 113345567888999999999988776543
Q ss_pred hhc-cCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 010147 236 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (517)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~ 314 (517)
... ......+.++.+++||.. ++..+|++.+.+..++.|+++|+++++.+|++++.||++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFPLVT--------------EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEEES--------------SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEeceEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111223456788889754 33458888888888889999999999999999999999998755
Q ss_pred HH
Q 010147 315 DS 316 (517)
Q Consensus 315 ~~ 316 (517)
++
T Consensus 145 ~l 146 (151)
T 3hcy_A 145 AR 146 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=99.23 E-value=3.5e-10 Score=96.06 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=100.1
Q ss_pred HHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccc-ccccccccCCchh
Q 010147 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI-QIGSSVPINLPIV 214 (517)
Q Consensus 136 l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 214 (517)
...+..+++.+-++++.| ++++++++++.+++...+.+++++|.+|++|++ +.+......+... ..+..+..+....
T Consensus 7 ~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~-~~l~~~aa~G~~~~l~~lr~~~~~~~~ 84 (160)
T 3cit_A 7 SQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD-NGVQTTARHGSKERLSTLETTADPLAI 84 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC---CCCEEEEEESCHHHHTTSCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC-CceeeeeccCchhhhhhhhcccccccc
Confidence 345677889999999999 888889999999999999999999999999985 4343333333210 0011111111111
Q ss_pred HHHhhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEe-ecCCCCccccchh
Q 010147 215 TDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHEL 293 (517)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~-~~~~~~~~~~~e~ 293 (517)
+ +++.. ......++.+++|+... .| ..+|++.+ ++.+...|+++|+
T Consensus 85 g-----------------pr~~~---~tg~~t~svl~vPL~~~------------~g-~~~Gvlql~N~~~~~~f~~eD~ 131 (160)
T 3cit_A 85 G-----------------PQWLE---RPGTHLPCVLLLPLRGA------------DE-GSFGTLVLANSVAISAPDGEDI 131 (160)
T ss_dssp S-----------------CEEEE---CTTSSSCEEEEEEEECS------------SS-SEEEEEEEEESSCCCCCCHHHH
T ss_pred c-----------------ccccc---ccCcccceeEEEeeecC------------CC-cEEEEEEEeccCCCCCCCHHHH
Confidence 1 22221 11233577888897311 22 34555554 6666668999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 294 ELIDVVADQVAVALSHAAILEDSMRA 319 (517)
Q Consensus 294 ~ll~~va~qva~al~~a~l~~~~~~~ 319 (517)
+.++.+|.|+|.+|+|+++++++++.
T Consensus 132 e~l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 132 ESLQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 35
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.18 E-value=6.5e-10 Score=112.35 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=122.5
Q ss_pred HHHhHHHHHHHHHHHcccCHHHHHHHHHHH----HHhhhCCceeEEEccCCCCCeEEEEEEeccc-cccccccccCCchh
Q 010147 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 214 (517)
Q Consensus 140 ~~~~~~l~~l~~~i~~s~d~~~il~~~~~~----l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 214 (517)
++.++.++++.+.+.+ .|++++++.+++. +.+.+++++|.||+.|+++..+......+.. ...+..+|.+.+++
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 3455667777777754 8888766655554 8999999999999999988877666554432 22344678888999
Q ss_pred HHHhhccCceeecCCCch---hhhhhccC-CCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecC-------
Q 010147 215 TDVFNSAQAMRLPYNCPL---ARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 283 (517)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~------- 283 (517)
..++.+++++.++|...+ ..+..... ....+.++.+++||... ++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSE-------------QGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECS-------------SCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECC-------------CCCEEEEEEEeccCCccccc
Confidence 999999999999988765 44432211 11234567888897542 2235777777665
Q ss_pred --------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 284 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 284 --------~~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~ 320 (517)
.++.|+++|.++++.++.+++.++++++++++.++.+
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~ 195 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQ 195 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988765544
No 36
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.17 E-value=2.1e-10 Score=124.31 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=127.0
Q ss_pred HHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhc
Q 010147 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (517)
++.+.+.++++.|+ ++|++++++.+++.+.+.+|+++|.||+.|+++..+......+........+|.+ +++++++.+
T Consensus 12 e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~~ 89 (691)
T 3ibj_A 12 DRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVED 89 (691)
T ss_dssp THHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHHH
Confidence 44567999999999 9999999999999999999999999999999888776544333222223456777 899999999
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecC-CCCccccchhHHHHHH
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVV 299 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~e~~ll~~v 299 (517)
++++.++|...++..... .....+.++.+++|+... .++..+|++++.+. .++.|+++|.++++.+
T Consensus 90 ~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI~~~------------~~g~viGvL~l~~~~~~~~ft~~d~~lL~~l 156 (691)
T 3ibj_A 90 KKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLEGDLFTDEDEHVIQHC 156 (691)
T ss_dssp CCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEEECS------------SSCSEEEEEEEESBSSSCCCCTTHHHHHHHH
T ss_pred CCeEEeccchhccccccc-cccCCccceEEEEEeEcC------------CCCcEEEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 999999998877644321 112234678889997543 11345788775544 5679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010147 300 ADQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 300 a~qva~al~~a~l~~~~~~~~ 320 (517)
+.+++.++++++++++.++.+
T Consensus 157 a~~~a~al~~a~l~~~~~~~~ 177 (691)
T 3ibj_A 157 FHYTSTVLTSTLAFQKEQKLK 177 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887765443
No 37
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=99.14 E-value=1.2e-09 Score=97.96 Aligned_cols=152 Identities=12% Similarity=0.063 Sum_probs=123.6
Q ss_pred HHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhh-CCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHH
Q 010147 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (517)
Q Consensus 139 ~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (517)
++.....+.+++..+..+.|+++.++.+++.+.+.+ ++++|.+|+.|++ .+.+....+. +....++.++++++.+
T Consensus 24 ~~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~a 99 (195)
T 1vhm_A 24 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTA 99 (195)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHH
Confidence 344456788899999999999999999999999999 9999999999863 4444433332 3356788899999999
Q ss_pred hhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHH
Q 010147 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (517)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~ 297 (517)
..+++++.++|...++++.. .....++.+++|+... +.++||+.+.+..++.|+++|.++++
T Consensus 100 a~tg~~i~V~Dv~~~p~~~~----~~~~~~S~l~VPI~~~--------------g~viGVL~i~s~~~~~F~e~d~~~L~ 161 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPLVVK--------------NQIIGVLDIDSTVFGRFTDEDEQGLR 161 (195)
T ss_dssp HHHTSCEEESCTTTCTTCCC----SCCCCSEEEEEEEEET--------------TEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred HhcCCEEEECCcccCcchhh----cCCCccEEEEEeEeEC--------------CEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 99999999999988766532 2345688999997643 34699999998888899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010147 298 VVADQVAVALSHAAI 312 (517)
Q Consensus 298 ~va~qva~al~~a~l 312 (517)
.+|.+++.+++++..
T Consensus 162 ~lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 162 QLVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987763
No 38
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.11 E-value=1.9e-10 Score=115.14 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccHHHH
Q 010147 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (517)
Q Consensus 343 ~~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~~~l~~~~~~l~~l 422 (517)
.+.+++.+++||+++|++.+.++.+.+.. +.+.++++++..+++++++++. ..+.+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 46689999999999999999877665432 5688889999999999999874 2236778888
Q ss_pred HHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHH---HHHHHHHHHHHHHhhcC-------------CCCeEEEEEEE
Q 010147 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEK---RLMQTILNIVGNAVKFT-------------KEGYVSIIASV 486 (517)
Q Consensus 423 i~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~---~l~qvl~NLl~NAik~~-------------~~g~i~i~~~~ 486 (517)
++.+...++..+...+..++++++.+. +..|+. ++.+++.||++||+||+ +.|.|++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 888888888888777777777765543 344775 45555999999999996 46788888766
Q ss_pred cCCCc-cccCCCCCCCC
Q 010147 487 AKPES-LSDWRPPEFYP 502 (517)
Q Consensus 487 ~~~~~-~~~~~~~~~~~ 502 (517)
.++.- +...++|.+++
T Consensus 147 ~~~~v~i~V~D~G~Gi~ 163 (379)
T 1b3q_A 147 EGNNVVIEVEDDGRGID 163 (379)
T ss_dssp ETTEEEEEEEECSCCCC
T ss_pred eCCEEEEEEEECCCCCC
Confidence 54332 33445555544
No 39
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=99.11 E-value=1.1e-09 Score=106.24 Aligned_cols=161 Identities=11% Similarity=-0.000 Sum_probs=111.1
Q ss_pred HHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccccc--ccccccCC--chhHH
Q 010147 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTD 216 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~~~~~ 216 (517)
+..+.++.+++.|++++|++++++++++++++.+|+|||.||..++++..-.++.....+.+. |..+|..+ .....
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 455679999999999999999999999999999999999999999988877777666554332 33333321 12244
Q ss_pred HhhccCceeecCCCchhh-h----------------------hhccC--CCCCCceeEEeeeeccccCccccCccccCcc
Q 010147 217 VFNSAQAMRLPYNCPLAR-I----------------------RLLVG--RYVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (517)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~----------------------~~~~~--~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (517)
.+..++...+.|....+. + +.... ....+.++.+.+|++. .+
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~-------------~~ 290 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVR-------------DN 290 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEE-------------TT
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEE-------------CC
Confidence 555666666666544320 0 00000 0012334555666544 44
Q ss_pred ccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010147 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (517)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~ 315 (517)
..++.+.+.++. +|.|+.+++++++.++.+++++|+++..+++
T Consensus 291 ~LWGLl~~Hh~~-pR~w~~~e~~~~e~la~~l~iai~q~e~~~~ 333 (337)
T 2ool_A 291 RLWGMISCHNLT-PRFVSYEVRQACELIAQVLTWQIGVLEEAEI 333 (337)
T ss_dssp EEEEEEEEEESS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666655 9999999999999999999999988766554
No 40
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=99.10 E-value=4.4e-09 Score=107.35 Aligned_cols=163 Identities=5% Similarity=-0.034 Sum_probs=113.0
Q ss_pred HHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccc--cccccccCC--chhHH
Q 010147 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 216 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~ 216 (517)
+..+.++.++..|++++|++++++++++++++.+|+|||.||..++++..-.++.....+.+ .|..+|..+ .....
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 44567999999999999999999999999999999999999999999877766666655433 233344321 22345
Q ss_pred HhhccCceeecCCCchhh-h--------------hhc--------cCC--CCCCceeEEeeeeccccCccccCccccCcc
Q 010147 217 VFNSAQAMRLPYNCPLAR-I--------------RLL--------VGR--YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (517)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~--------------~~~--------~~~--~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (517)
.+..++...+.|....+. + ..+ ... ...+-++.+.+|++.. +
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~ 268 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG-------------G 268 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS-------------S
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC-------------C
Confidence 566666667766654320 0 000 000 0123345566665444 4
Q ss_pred ccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (517)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~ 317 (517)
..++.+.+.++ .+|.|+..++.+++.++.+++++|.++..+++.+
T Consensus 269 ~LWGLl~~Hh~-~pR~w~~~er~~~e~la~~ls~al~q~~~~~~~~ 313 (505)
T 3nhq_A 269 KLWGLFSCHHM-SPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAE 313 (505)
T ss_dssp SEEEEEEEEES-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555656555 5999999999999999999999999887766543
No 41
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.08 E-value=7e-10 Score=98.11 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccc-c--ccccccccCC--chhHHH-----------------
Q 010147 160 HTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-I--QIGSSVPINL--PIVTDV----------------- 217 (517)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~--~~~~~~----------------- 217 (517)
+++++++++.+.+.+++|||.||+.++++............ . ..+..+|..+ ......
T Consensus 2 ~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~~ 81 (172)
T 2k2n_A 2 DQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQSR 81 (172)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeecccccc
Confidence 68999999999999999999999999876655555444321 1 1223333321 111222
Q ss_pred -------hhccCceeecCCCchhhhhh-ccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccc
Q 010147 218 -------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR 289 (517)
Q Consensus 218 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~ 289 (517)
..+++++.+++......+.. .......+.++.+++|+...++. +|++.+.+..++.|+
T Consensus 82 g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l--------------~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 82 SISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQEL--------------WGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSSCC--------------CEEEEEEECSCCCCC
T ss_pred ccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECCEE--------------EEEEEEEeCCCCCCC
Confidence 23344444544433222211 11112345677888887554443 677777777899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 010147 290 DHELELIDVVADQVAVALSHAAIL 313 (517)
Q Consensus 290 ~~e~~ll~~va~qva~al~~a~l~ 313 (517)
++|+++++.+|+++++||+||++|
T Consensus 148 ~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999886
No 42
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=99.08 E-value=2e-09 Score=103.15 Aligned_cols=154 Identities=8% Similarity=-0.014 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccccc--ccccccCC--chhHHHh
Q 010147 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTDVF 218 (517)
Q Consensus 143 ~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~~~~~~~ 218 (517)
.+.++.++..|++++|++++++++++++++.+|+||+.||..++++..-.++.....+.+. |..+|..+ ......+
T Consensus 133 ~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly 212 (327)
T 4e04_A 133 FRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLY 212 (327)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHH
Confidence 4568999999999999999999999999999999999999999998887777776665433 33333321 1234556
Q ss_pred hccCceeecCCCchhh---------------hhhc--------c--CCCCCCceeEEeeeeccccCccccCccccCcccc
Q 010147 219 NSAQAMRLPYNCPLAR---------------IRLL--------V--GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSY 273 (517)
Q Consensus 219 ~~~~~~~~~~~~~~~~---------------~~~~--------~--~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~ 273 (517)
..++...+.|....+. +... . .....+-++.+.+|++..++ .
T Consensus 213 ~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~~-------------L 279 (327)
T 4e04_A 213 TINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGER-------------L 279 (327)
T ss_dssp HHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETTE-------------E
T ss_pred HcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECCE-------------E
Confidence 6666667766544310 0000 0 00112345566666654444 3
Q ss_pred EEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHH
Q 010147 274 AVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (517)
Q Consensus 274 ~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a 310 (517)
++.+.+ +..++|.|+..++++++.++.+++++|++.
T Consensus 280 WGLl~~-Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 280 WGLIAC-HHRKPNYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp EEEEEE-EESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEE-ecCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 556899999999999999999999999554
No 43
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=99.07 E-value=5.7e-09 Score=106.78 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccc--cccccccCC--chhHHHh
Q 010147 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVF 218 (517)
Q Consensus 143 ~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 218 (517)
.+.++.++..|++++|++++++++++++++.+|+|||.||..++++..-.++.....+.+ .|..+|..+ ......+
T Consensus 137 ~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly 216 (520)
T 3zq5_A 137 YHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLF 216 (520)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHH
Confidence 456899999999999999999999999999999999999999999887777666665433 233333321 1234555
Q ss_pred hccCceeecCCCchhh-h--------------hh--------ccCC--CCCCceeEEeeeeccccCccccCccccCcccc
Q 010147 219 NSAQAMRLPYNCPLAR-I--------------RL--------LVGR--YVPPDIVAVRVPLLHLSNFQINDWPELPAKSY 273 (517)
Q Consensus 219 ~~~~~~~~~~~~~~~~-~--------------~~--------~~~~--~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~ 273 (517)
..++...+.|....+. + .. .... ...+-++.+.+|++..+ ..
T Consensus 217 ~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~-------------~L 283 (520)
T 3zq5_A 217 IHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDG-------------HL 283 (520)
T ss_dssp HHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETT-------------EE
T ss_pred HcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECC-------------EE
Confidence 6666777766654311 0 00 0000 01334555666664444 44
Q ss_pred EEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 274 AVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (517)
Q Consensus 274 ~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~ 317 (517)
++.+.+.++ ++|.|+..++++++.++.+++++|.++..+++.+
T Consensus 284 WGLl~~Hh~-~pR~w~~~er~~~e~la~~lsiai~q~e~~~~~~ 326 (520)
T 3zq5_A 284 WGLIACHHQ-TPKVIPFELRKACEFFGRVVFSNISAQEDTETFD 326 (520)
T ss_dssp EEEEEEEES-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 7999999999999999999999999887776543
No 44
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=99.05 E-value=2.2e-09 Score=103.24 Aligned_cols=157 Identities=5% Similarity=-0.029 Sum_probs=109.4
Q ss_pred HHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccccc--ccccccCC--chhHH
Q 010147 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTD 216 (517)
Q Consensus 141 ~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~~~~~ 216 (517)
+..+.++.++..|++++|++++++++++++++.+|+||+.||..++++..-.++.....+.+. |..+|..+ .....
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 445679999999999999999999999999999999999999999998887777776665432 33333321 22345
Q ss_pred HhhccCceeecCCCchhh---------------hhhc--------cC--CCCCCceeEEeeeeccccCccccCccccCcc
Q 010147 217 VFNSAQAMRLPYNCPLAR---------------IRLL--------VG--RYVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (517)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~---------------~~~~--------~~--~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (517)
.+..++...+.|....+. +..+ .. ....+.++.+.+|++..+
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~------------- 295 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG------------- 295 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT-------------
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECC-------------
Confidence 556666666766554321 0000 00 011244555666664444
Q ss_pred ccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 010147 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (517)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~ 311 (517)
..++.+.+.+ .++|.|+..++++++.++.+++++|.+..
T Consensus 296 ~LWGLL~~Hh-~~pR~w~~~er~~~e~la~~lsiaI~~~~ 334 (343)
T 3s7o_A 296 QLWGLIACHH-QTPYVLPPDLRTTLESLGRLLSLQVQVKE 334 (343)
T ss_dssp EEEEEEEEEE-SSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEc-CCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 78999999999999999999999996554
No 45
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.95 E-value=2e-08 Score=87.45 Aligned_cols=143 Identities=6% Similarity=-0.019 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhC-CceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhcc
Q 010147 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (517)
Q Consensus 143 ~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (517)
...+.++..-+....|....+..++..+.+.++ .+.|.+|+.++ ..+.+....+. +....++.+.++++.+..++
T Consensus 17 ~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~--~~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg 92 (171)
T 3rfb_A 17 QMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDG--KELVLGPFQGG--VSCIRIALGKGVCGEAAHFQ 92 (171)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS--SEEEEEEEESS--SCCCEEETTSHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC--CEEEEEeccCC--ccceEeeCCcCHHHHHHhhC
Confidence 345666666678899999999999999999997 99999999985 34554443333 33557899999999999999
Q ss_pred CceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHH
Q 010147 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (517)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~ 301 (517)
+++.++|...++++-. .....++.+++||...+ ..+||+.+.+..++.|+++|.++++.+|+
T Consensus 93 ~~i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~~g--------------~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 93 ETVIVGDVTTYLNYIS----CDSLAKSEIVVPMMKNG--------------QLLGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp SCEEESCTTSCSSCCC----SCTTCCEEEEEEEEETT--------------EEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred CEEEECCcccCccccc----cCcccCceEEEEEEECC--------------EEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 9999999988876532 23456788999976433 46999999998888999999999999999
Q ss_pred HHHHHH
Q 010147 302 QVAVAL 307 (517)
Q Consensus 302 qva~al 307 (517)
+++.++
T Consensus 155 ~la~~~ 160 (171)
T 3rfb_A 155 ILLEKT 160 (171)
T ss_dssp HHHHSC
T ss_pred HHHHHh
Confidence 998765
No 46
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.92 E-value=3.5e-08 Score=87.66 Aligned_cols=145 Identities=6% Similarity=-0.002 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHhhh-----CCceeEEEccCCCC-CeEEEEEEeccccccccccccCCchhHHH
Q 010147 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (517)
Q Consensus 144 ~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (517)
..+.++...+..+.|..+.++.+++.+.+.+ ++++|.+|+.|+++ ..+......+ ......++.+.++++.+
T Consensus 27 ~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g--~~~~~~i~~g~Gi~G~a 104 (180)
T 1f5m_A 27 QLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQG--KVACQMIQFGKGVCGTA 104 (180)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEE--SCCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCC--CccceeecCCCcchhhh
Confidence 4577777778888999999999999999999 99999999998764 5555432222 22345688899999999
Q ss_pred hhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHH
Q 010147 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (517)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~ 297 (517)
..+++++.++|...++++.. ...+.++.+++|+... ++.++|++.+.+..++.|+++|.++++
T Consensus 105 a~~g~~v~v~Dv~~dp~~~~----~~~~~~S~l~vPi~~~-------------~g~viGVL~l~s~~~~~F~~~d~~~L~ 167 (180)
T 1f5m_A 105 ASTKETQIVPDVNKYPGHIA----CDGETKSEIVVPIISN-------------DGKTLGVIDIDCLDYEGFDHVDKEFLE 167 (180)
T ss_dssp HHHTSCEEESCGGGSTTCCC----SSTTCCEEEEEEEECT-------------TSCEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred hhcCCEEEeCCcccCccccc----cCcccceEEEEEEEcC-------------CCeEEEEEEeccCCCCCcCHHHHHHHH
Confidence 99999999999988777652 2346688899997541 334699999998888899999999999
Q ss_pred HHHHHHHHHH
Q 010147 298 VVADQVAVAL 307 (517)
Q Consensus 298 ~va~qva~al 307 (517)
.+|.+++.++
T Consensus 168 ~la~~~a~~~ 177 (180)
T 1f5m_A 168 KLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 47
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.89 E-value=2.9e-08 Score=85.61 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHhhhC-CceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhccCc
Q 010147 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (517)
Q Consensus 145 ~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (517)
.+.++..-+....|+...+..++..+.+.++ .++|.+|+.+++ .+.+....+. +....++.++++++.+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~--~a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGH--PACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCC--cccEEeeCCCCHHHHHHhhCCE
Confidence 3555666677788999999999999999997 999999999854 4544444333 2345789999999999999999
Q ss_pred eeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHH
Q 010147 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (517)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qv 303 (517)
+.++|...++++-. .....++.+++||...+ ..+||+.+.+..++.|+++|.++++.+|+++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~~g--------------~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVPIFKDD--------------KIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEEEEETT--------------EEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEEEEECC--------------EEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999988776532 23456788999976433 4699999999888899999999999999999
Q ss_pred HHHH
Q 010147 304 AVAL 307 (517)
Q Consensus 304 a~al 307 (517)
+-.+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 48
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.81 E-value=2.7e-08 Score=79.75 Aligned_cols=149 Identities=12% Similarity=0.206 Sum_probs=111.8
Q ss_pred HHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccc---ccccc---ccCCchhHHHhhccCcee
Q 010147 152 EIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ---IGSSV---PINLPIVTDVFNSAQAMR 225 (517)
Q Consensus 152 ~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~ 225 (517)
.++.-.|.+++.+.....+.++.+....++|+.|.++..+.-..+.+-+.. .-..+ |-.-|....+++.++...
T Consensus 7 r~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll 86 (162)
T 3eea_A 7 RLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLM 86 (162)
T ss_dssp CGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEE
T ss_pred hHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCccc
Confidence 345667899999999999999999999999999999999988888875432 11123 335577889999999988
Q ss_pred ecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCC-ccccchhHHHHHHHHHHH
Q 010147 226 LPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVA 304 (517)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~e~~ll~~va~qva 304 (517)
.++.....-+... ......+...+.+|| ..|+.++|+++..+...+ .|+++|+.++..+|+++|
T Consensus 87 ~~dp~~s~l~tp~-l~k~~~~~~ILgVPL--------------~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAA 151 (162)
T 3eea_A 87 LTDPGSSDLLTPK-LRKLLRNLCVLAVPM--------------VVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAA 151 (162)
T ss_dssp ESCGGGCTTSCHH-HHHHTTTEEEEEEEE--------------EETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchhccHH-HHHHHhhCeEEEecc--------------eeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHH
Confidence 8765543332211 222344566777885 445566999999988888 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 010147 305 VALSHAAILED 315 (517)
Q Consensus 305 ~al~~a~l~~~ 315 (517)
+|++|++++++
T Consensus 152 IAIdnArLldE 162 (162)
T 3eea_A 152 LVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHhhhhcC
Confidence 99999998764
No 49
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.78 E-value=1.4e-08 Score=87.39 Aligned_cols=89 Identities=24% Similarity=0.314 Sum_probs=70.1
Q ss_pred ccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCc
Q 010147 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES 491 (517)
Q Consensus 413 ~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~ 491 (517)
+.+++|+.+++++++..+...+..+++.++++.+++.+ .+.+|+..+.+++.||++||+||++ +|.|.|.+...++.-
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~ 80 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKV 80 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSC-EEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEE
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCc-EEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEE
Confidence 45689999999999999999999999999998876543 4888999999999999999999985 677888776544321
Q ss_pred -cccCCCCCCCC
Q 010147 492 -LSDWRPPEFYP 502 (517)
Q Consensus 492 -~~~~~~~~~~~ 502 (517)
+...++|.+.+
T Consensus 81 ~i~i~D~G~g~~ 92 (152)
T 3a0y_A 81 RVSVWNSGPPIP 92 (152)
T ss_dssp EEEEEEESCCCC
T ss_pred EEEEEeCCCCcC
Confidence 22335554444
No 50
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.78 E-value=7e-10 Score=123.15 Aligned_cols=173 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCC--eEEE------EEEeccc--cccccc
Q 010147 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLEL------SYTLNNQ--IQIGSS 206 (517)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~l~~------~~~~~~~--~~~~~~ 206 (517)
+++.++++.+.++++.+++++|++++++.+++.+.+.+++++|.||+.|+++. .... ..+.... ...+..
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45566778899999999999999999999999999999999999999998743 2111 1121111 123345
Q ss_pred cccCCchhHHHhhccCceeecCCCchhhhhhccCC-CCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCC
Q 010147 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (517)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~ 285 (517)
+|.+.++++.++.+++++.++|...++++...... ...+.++.+++||.. .++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~~-------------~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKN-------------HREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEeeEc-------------CCCCEEEEEEEEecCC
Confidence 67778899999999999999998877766532211 122345666777643 2334578887776553
Q ss_pred ---CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 286 ---RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (517)
Q Consensus 286 ---~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~~~ 322 (517)
+.|+++|.++++.+|.++++||+|++++++.++.+++
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~~ 332 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKR 332 (878)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999877655443
No 51
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.75 E-value=9.5e-09 Score=89.27 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=69.8
Q ss_pred ccccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEcC
Q 010147 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAK 488 (517)
Q Consensus 411 ~l~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~--~g~i~i~~~~~~ 488 (517)
+++.+++|+.+++++++..+... ..+++.+.++.+++.+. +.+|+..+.+++.||++||+||++ +|.|.|.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 35567999999999999999987 77889999988777665 788999999999999999999987 677888776554
Q ss_pred C----------C-ccccCCCCCCCCCCCCCceEEE
Q 010147 489 P----------E-SLSDWRPPEFYPVSTDGHFYLR 512 (517)
Q Consensus 489 ~----------~-~~~~~~~~~~~~~~~~~~~~~~ 512 (517)
+ . .+...++|.+.+......+|-+
T Consensus 80 ~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~ 114 (160)
T 1r62_A 80 QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYP 114 (160)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTC-----------
T ss_pred cccccccccccEEEEEEEeCCCCCCHHHHHHhhCc
Confidence 3 1 1334466666655444444433
No 52
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.74 E-value=2e-08 Score=86.47 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=68.2
Q ss_pred ccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCc-cc
Q 010147 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES-LS 493 (517)
Q Consensus 415 ~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~-~~ 493 (517)
+++++.+++++++..+...+..+++.++++++++. .+.+|+..+.+++.||+.||+||+++ .|.|.+...++.- +.
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~~~~i~ 78 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDEHLYIV 78 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSSCEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCCEEEEE
Confidence 58999999999999999999999999999886664 37889999999999999999999976 7777766544332 33
Q ss_pred cCCCCCCCC
Q 010147 494 DWRPPEFYP 502 (517)
Q Consensus 494 ~~~~~~~~~ 502 (517)
..++|.+.+
T Consensus 79 i~D~G~gi~ 87 (152)
T 1id0_A 79 VEDDGPGIP 87 (152)
T ss_dssp EEESSSCCC
T ss_pred EEeCCCCcC
Confidence 445555544
No 53
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.72 E-value=1.4e-09 Score=120.69 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhHHHHhHHHHHHHHHHH-cccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEE-Ee-ccc--------cccc
Q 010147 136 ILTQEETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TL-NNQ--------IQIG 204 (517)
Q Consensus 136 l~~~~~~~~~l~~l~~~i~-~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~-~~-~~~--------~~~~ 204 (517)
.+++.++.+.+.++++.+. ++.+++++++.+++.+.+.+++++|.|++.++++..+.... .+ ... ....
T Consensus 326 ~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~ 405 (878)
T 3bjc_A 326 SLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREH 405 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccc
Confidence 3344455667778888885 45799999999999999999999999999998776543321 11 100 0113
Q ss_pred cccccCCchhHHHhhccCceeecCCCchhhhhhccCCCC----CCceeEEeeeeccccCccccCccccCccccEEEEEEe
Q 010147 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV----PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 280 (517)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~ 280 (517)
..+|...+.+..+..+++++.++|...++++........ .+.++.+++||...+ ++.++|++.+
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~------------~g~viGVL~l 473 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGK------------KNKVIGVCQL 473 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEecCC------------CCcEEEEEEE
Confidence 456677788899999999999998877776543221111 235667777764431 0335777777
Q ss_pred ecCCC------CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 281 PTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQL 323 (517)
Q Consensus 281 ~~~~~------~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~~~l 323 (517)
.+..+ +.|+++|+++++.+|.++|+||+|++++++.++..++.
T Consensus 474 ~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~~ 522 (878)
T 3bjc_A 474 VNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQ 522 (878)
T ss_dssp -------------------------------------------------
T ss_pred EEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 69999999999999999999999999999888765543
No 54
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.70 E-value=2.7e-07 Score=98.55 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=109.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccc--cccccccCC--chhHHHhhc
Q 010147 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFNS 220 (517)
Q Consensus 145 ~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 220 (517)
.+..+.+.|++++|++++++++++++.+++|+||+.||..++++.+-.++.....+.+ .|..+|..+ .-....+..
T Consensus 133 ~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~ 212 (635)
T 4eho_A 133 TLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYER 212 (635)
T ss_dssp TSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHc
Confidence 3566777899999999999999999999999999999999999888777766655433 233344322 223455556
Q ss_pred cCceeecCCCchhh-h--------------hhccCCC----------CCCceeEEeeeeccccCccccCccccCccccEE
Q 010147 221 AQAMRLPYNCPLAR-I--------------RLLVGRY----------VPPDIVAVRVPLLHLSNFQINDWPELPAKSYAV 275 (517)
Q Consensus 221 ~~~~~~~~~~~~~~-~--------------~~~~~~~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~ 275 (517)
++...+.|....+. + ....... ..+.++.+.+|++. .+..++
T Consensus 213 ~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~-------------~~~LWG 279 (635)
T 4eho_A 213 QRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVV-------------GGKLWG 279 (635)
T ss_dssp SCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEE-------------TTEEEE
T ss_pred CCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEE-------------cceeee
Confidence 66666665432210 0 0000000 11334555666544 344455
Q ss_pred EEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 276 MVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (517)
Q Consensus 276 ~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~~~~~~~~ 320 (517)
.+.+. ...+|.|+.+++.+++.++.+++++|.++..+++.++..
T Consensus 280 Ll~~h-~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 323 (635)
T 4eho_A 280 LVACH-HYLPRFIHFELRAICELLAEAIATRITALESFAQSQSEL 323 (635)
T ss_dssp EEEEE-ESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeee-cCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHH
Confidence 55554 456899999999999999999999999998887765543
No 55
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.62 E-value=2.8e-08 Score=85.41 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=65.8
Q ss_pred cccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCc
Q 010147 412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES 491 (517)
Q Consensus 412 l~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~ 491 (517)
.+.+++|+.+++++++..+.... +++.++++.+ .+..+.+|+..+.+++.||++||+||+++|.|.|.+...++.-
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~ 78 (150)
T 1ysr_A 3 DDHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGV 78 (150)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE
T ss_pred ccccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEE
Confidence 35568999999999999988765 4566666543 3335889999999999999999999999888888877654432
Q ss_pred -cccCCCCCCCC
Q 010147 492 -LSDWRPPEFYP 502 (517)
Q Consensus 492 -~~~~~~~~~~~ 502 (517)
+...++|.+.+
T Consensus 79 ~i~v~D~G~gi~ 90 (150)
T 1ysr_A 79 EIAIDDNGSGVP 90 (150)
T ss_dssp EEEEEESSSCCC
T ss_pred EEEEEECCCCCC
Confidence 33446665544
No 56
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.56 E-value=1e-07 Score=82.96 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=63.2
Q ss_pred ccccccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCC
Q 010147 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (517)
Q Consensus 411 ~l~~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~ 490 (517)
+++.+++|+.+++++++..+.. ++..+++++.++.+ .+.+|+..+.+++.||+.||+||+ +|.|.|.+...++.
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~-~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~~ 77 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGSI-EVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPNR 77 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSCC-CEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETTE
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCCc-eEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCCE
Confidence 5667799999999999998653 45556666544433 488899999999999999999999 78888887765432
Q ss_pred c-cccCCCCCCCC
Q 010147 491 S-LSDWRPPEFYP 502 (517)
Q Consensus 491 ~-~~~~~~~~~~~ 502 (517)
. +...++|.+.+
T Consensus 78 ~~i~i~D~G~gi~ 90 (161)
T 1bxd_A 78 AWFQVEDDGPGIA 90 (161)
T ss_dssp EEEEEEEESSCSC
T ss_pred EEEEEEeCCCCCC
Confidence 2 22334444443
No 57
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.55 E-value=3e-07 Score=81.37 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCC-c--
Q 010147 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPE-S-- 491 (517)
Q Consensus 416 ~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~-~-- 491 (517)
++|+.+++++++..+... ..+++.+.+++++... .+.+|+..|.+|+.||+.||+||++ .|.+.|.+.....+ .
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~ 79 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDL-YVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLY 79 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCC-EEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEE
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCc-EEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEE
Confidence 689999999999999988 7889999998866544 4889999999999999999999996 47777777543332 2
Q ss_pred cccCCCCCCCCCC
Q 010147 492 LSDWRPPEFYPVS 504 (517)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (517)
+.+.++|.+.+..
T Consensus 80 i~V~D~G~gi~~~ 92 (177)
T 3sl2_A 80 ISVKDEGIGIPKK 92 (177)
T ss_dssp EEEECCSSCCCTT
T ss_pred EEEEECCCCCCHH
Confidence 3345666665543
No 58
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.47 E-value=2.2e-07 Score=77.52 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=63.2
Q ss_pred ccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCcccc
Q 010147 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (517)
Q Consensus 415 ~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~ 494 (517)
+++++.+++++++..+ ..+++.++++++.+.+.....|+..+.+++.||++||+||++.|.|.|.+...++-.+..
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v 78 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEV 78 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEE
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEE
Confidence 4789999999999888 356777887776665543445688999999999999999998899999888765511224
Q ss_pred CCCCCCCCC
Q 010147 495 WRPPEFYPV 503 (517)
Q Consensus 495 ~~~~~~~~~ 503 (517)
.++|.+.+.
T Consensus 79 ~D~G~gi~~ 87 (129)
T 3zxo_A 79 TDNGRGMPD 87 (129)
T ss_dssp EECCCCCTT
T ss_pred ecCCCCCCc
Confidence 466665553
No 59
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.43 E-value=1.2e-06 Score=70.79 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010147 337 AEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (517)
Q Consensus 337 ~~~~~~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~s 403 (517)
+++..+.+.+|++.++||+|||++.|.++++.+.+. ..+..+.+..++++|..++++++++.
T Consensus 53 l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 53 LKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333445567899999999999999999999988542 23456899999999999999999873
No 60
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.26 E-value=1.5e-06 Score=72.43 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCc-cccC
Q 010147 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES-LSDW 495 (517)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~-~~~~ 495 (517)
+++.+.+.++...++ .++++++++.+.+.+.....++..+.+++.||++||+||++.+.|.|.+...++.- +...
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~ 77 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVS 77 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEE
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEE
Confidence 456666666665554 67888888776554444456889999999999999999998899998887665432 3455
Q ss_pred CCCCCCCCC
Q 010147 496 RPPEFYPVS 504 (517)
Q Consensus 496 ~~~~~~~~~ 504 (517)
++|.+++..
T Consensus 78 D~G~Gi~~~ 86 (128)
T 3ehg_A 78 DDGTFKGEE 86 (128)
T ss_dssp ESSCCCSCS
T ss_pred ECCcCcCcc
Confidence 777777644
No 61
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.18 E-value=1.8e-06 Score=77.10 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred cccccHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-------------CCCeE
Q 010147 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-------------KEGYV 480 (517)
Q Consensus 414 ~~~~~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~-------------~~g~i 480 (517)
.+++++.++++++...+...+..+++.++++++.+.......+...+.+++.||+.||+||+ ++|.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999988888888887655432222334556666999999999996 35778
Q ss_pred EEEEEEcCCCc-cccCCCCCCCC
Q 010147 481 SIIASVAKPES-LSDWRPPEFYP 502 (517)
Q Consensus 481 ~i~~~~~~~~~-~~~~~~~~~~~ 502 (517)
.|.+...++.- +.+.++|.+.+
T Consensus 82 ~I~~~~~~~~~~i~V~D~G~Gi~ 104 (189)
T 1i58_A 82 ILSARHEGNNVVIEVEDDGRGID 104 (189)
T ss_dssp EEEEEEETTEEEEEEEECSSCCC
T ss_pred EEEEEecCCEEEEEEEeCCCCcC
Confidence 88877654332 33556666665
No 62
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.14 E-value=4.2e-06 Score=69.01 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHhhhhhcCCcEEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCC
Q 010147 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (517)
Q Consensus 418 ~l~~li~~~~~~~~~~~~~~~i~i~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~ 497 (517)
++.+.+++++..+ ...++.++++++.+.+.....++..+.+++.||++||+||++.|.|.|.+...++-.+...++
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~i~v~D~ 77 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVEDDVRVEVVDD 77 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEEEEEEEEEEC
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCCCEEEEEEEC
Confidence 5777788888777 356677777766655443444688999999999999999999899888887665411234466
Q ss_pred CCCCCC
Q 010147 498 PEFYPV 503 (517)
Q Consensus 498 ~~~~~~ 503 (517)
|++.+.
T Consensus 78 G~gi~~ 83 (124)
T 3zxq_A 78 GVGISG 83 (124)
T ss_dssp CCSSCG
T ss_pred CCCCCc
Confidence 665553
No 63
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.93 E-value=4.1e-05 Score=61.57 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010147 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (517)
Q Consensus 342 ~~~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr 404 (517)
+.+.+|+..++||++||++.+.+.++.+... ..+..+.+.+.+.++..++++++++++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999987543 246678899999999999999998764
No 64
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=96.43 E-value=0.019 Score=54.28 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhhCCceeEEEccCCCC-CeEEEEEEeccccccccccccCCchhHHHhhccCceeecCCCchhhhhhc
Q 010147 160 HTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL 238 (517)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (517)
..+.+..++.+++..+++.+++|..++++ .........++ ...+..+++.+...+.+++...+.+......
T Consensus 25 ~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~~---- 96 (298)
T 4eu0_A 25 DALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLERG---- 96 (298)
T ss_dssp HHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC----------
T ss_pred hHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhcc----
Confidence 45578889999999999999999987765 33333344443 2356678999999999999888875322110
Q ss_pred cCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 010147 239 VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (517)
Q Consensus 239 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al~~a~l~ 313 (517)
......+...++|++. .++...|++++.+-....|+++.+.++..++++.+.+++++...
T Consensus 97 --~~~~~sryL~viPLld-------------~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 97 --EQRAHSAAAVCVPLVD-------------TDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ---------CCEEEEEEC-------------TTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred --ccccccceEEEEEeec-------------CCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 0012346667888753 33446899999999889999999999999999999999877644
No 65
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=95.82 E-value=0.0087 Score=50.24 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEcCCCc-cccCCCCCCCC
Q 010147 455 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPES-LSDWRPPEFYP 502 (517)
Q Consensus 455 ~D~~~l~qvl~NLl~NAik~~~~----g~i~i~~~~~~~~~-~~~~~~~~~~~ 502 (517)
.|...+.+++.||+.||+||+.. |.|.|.+...++.- +.+.++|.+.+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~ 87 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC
Confidence 48889999999999999999854 77888877654332 33556666554
No 66
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=95.11 E-value=0.0025 Score=64.79 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=37.9
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEcC--CC--ccccCCCCCCCCCC
Q 010147 453 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK--PE--SLSDWRPPEFYPVS 504 (517)
Q Consensus 453 v~~D~~~l~qvl~NLl~NAik~~~~g----~i~i~~~~~~--~~--~~~~~~~~~~~~~~ 504 (517)
+.+|+.+|.||+.||+.||+||++.| .|.|.+...+ .+ .+.+.|+|.+++..
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 85 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHH
Confidence 45688999999999999999999754 5777776543 12 24456777766543
No 67
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=95.11 E-value=0.0026 Score=65.49 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEcC--CC--ccccCCCCCCCCCC
Q 010147 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK--PE--SLSDWRPPEFYPVS 504 (517)
Q Consensus 456 D~~~l~qvl~NLl~NAik~~~~g----~i~i~~~~~~--~~--~~~~~~~~~~~~~~ 504 (517)
|+.+|.|++.||+.||+||++.| .|.|.+...+ .+ .+.+.++|.|++..
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 84 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHH
Confidence 45999999999999999999864 5777776543 12 24456777766543
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=94.91 E-value=0.33 Score=42.70 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 010147 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLL 392 (517)
Q Consensus 344 ~~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~rl 392 (517)
.-+.++...||+.|=|..|.|++++= .-++..+|+..+....+..
T Consensus 21 ~~~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~~ 65 (192)
T 1ixm_A 21 LIHLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKHE 65 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHH
Confidence 44566778999999999999999863 3455666776666555543
No 69
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=94.49 E-value=0.71 Score=42.45 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=87.7
Q ss_pred HHHHHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEecccccccccccc--
Q 010147 132 EMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-- 209 (517)
Q Consensus 132 ~~~~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~-- 209 (517)
.++..+..++..+.+..+...+....|.+++++.+...+.+.|+++.+.+++.+...... +...+.
T Consensus 91 Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~------------~~~~~~~~ 158 (252)
T 3e98_A 91 LMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV------------GRSVSSAE 158 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS------------SEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc------------hhhccchh
Confidence 334445555556778889999999999999999999999999999999999987543210 000000
Q ss_pred CCchhHHHhhccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccc
Q 010147 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR 289 (517)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~ 289 (517)
....+...+..+.+..-.........-+. ........+.-.+||. .++ .+|++++.+..+..|+
T Consensus 159 ~~~~~~~~l~~~~py~G~l~~~e~~~lFg-~~~a~~v~S~AllpL~--------------~~~-~~GlLalGS~D~~rF~ 222 (252)
T 3e98_A 159 AHQAIGGLLSGGKTVCGVLRPHELAFLFG-ESDRDEIGSAAVVSLS--------------FQG-LHGVLAIGSPDPQHYK 222 (252)
T ss_dssp HHHHHHHHHTTCCCSTTCCCHHHHHHHCC-CTTGGGCCEEEEEEEE--------------SSS-EEEEEEEEESSTTGGG
T ss_pred HHHHHHHHhCCCCceECCCCchHHHHhcC-CCccccccceEEEEcC--------------CCC-ceEEEEEcCCChhhcC
Confidence 01122333333333221111111111110 0011223555566752 222 4788888887766666
Q ss_pred c-chhHHHHHHHHHHHHHHH
Q 010147 290 D-HELELIDVVADQVAVALS 308 (517)
Q Consensus 290 ~-~e~~ll~~va~qva~al~ 308 (517)
+ -...+|+.+|.-++.++.
T Consensus 223 p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 223 SSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp STTTTHHHHHHHHHHHHHGG
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 5 578889999988887764
No 70
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=93.94 E-value=0.0096 Score=62.29 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=39.6
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCC-CC---eEEEEEEEcCCC--ccccCCCCCCCCCCC
Q 010147 453 AVGDEKRLMQTILNIVGNAVKFTK-EG---YVSIIASVAKPE--SLSDWRPPEFYPVST 505 (517)
Q Consensus 453 v~~D~~~l~qvl~NLl~NAik~~~-~g---~i~i~~~~~~~~--~~~~~~~~~~~~~~~ 505 (517)
+.+|+..|.+++.||+.||++|+. .| .|.|.+...+.+ .+.+.++|.++|...
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~ 89 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQ 89 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGG
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHH
Confidence 667999999999999999999987 45 677776655422 355667777776443
No 71
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=91.52 E-value=0.092 Score=51.39 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCCCCCCCCCCCCceEEEE
Q 010147 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRV 513 (517)
Q Consensus 459 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (517)
.+.+++.||+.||++|. .+.|.|.+...+...+.+.|+|.|+|..+-..+|.+|
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 57899999999999986 4677777754333346677888888766655555443
No 72
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=90.61 E-value=0.058 Score=52.23 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 459 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.+.+++.||+.||+++. .+.|.|.+...+...+.+.|+|.|+|..+
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~~~~~~I~V~DnG~GI~~~~ 73 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKEGGLKLIQIQDNGTGIRKED 73 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEGGGTSEEEEEECSCCCCGGG
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEeCCEEEEEEEECCcCcChHH
Confidence 46799999999999995 46777777532222255667777766443
No 73
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.15 Score=49.86 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCCCCCCCCCCCCceEE
Q 010147 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYL 511 (517)
Q Consensus 459 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (517)
.+.+++.||+.||+++. .+.|.|.+...+...+.+.|+|.|+|..+-..++.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~ 76 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLAL 76 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTC
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEEeCCEEEEEEEECCCCcChhHhcccee
Confidence 46799999999999986 46777776432222466778888887655444443
No 74
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=85.71 E-value=0.53 Score=45.36 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCCCCCCCC
Q 010147 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPV 503 (517)
Q Consensus 459 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 503 (517)
.+.+++.||+.||++|. .+.|.|.+...+...+.+.|+|.|++.
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~ 67 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIERGGAKLIRIRDNGCGIKK 67 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEGGGTSEEEEEECSCCCCG
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEeCCceEEEEEEcCCCcCH
Confidence 56899999999999997 467777776433234556677777653
No 75
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=79.93 E-value=1.3 Score=43.75 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEEcCCCc--cccCCCCCCCCC
Q 010147 456 DEKRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPES--LSDWRPPEFYPV 503 (517)
Q Consensus 456 D~~~l~qvl~NLl~NAik~~----~~g~i~i~~~~~~~~~--~~~~~~~~~~~~ 503 (517)
+...+..++.||++||++|+ ++|.|.+.+....++. +.+.+.|++.|.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~ 347 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDH 347 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC---
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCC
Confidence 45678999999999999997 3688888888764333 445566666553
No 76
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=76.71 E-value=4.1 Score=41.41 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=43.9
Q ss_pred HHHhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccC
Q 010147 135 LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (517)
Q Consensus 135 ~l~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (517)
+.+++.+..+.+..+...++++.|..+++.+....+.+.+++|++++|..+
T Consensus 311 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 311 IAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 344456666778899999999999999999999999999999999999865
No 77
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=75.71 E-value=42 Score=29.98 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=79.6
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCC---CCeEEEEEEeccccc---cccccccCCchhHHHhhc
Q 010147 147 RMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNS 220 (517)
Q Consensus 147 ~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~---~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 220 (517)
..+-..+....+.+++.+.+ ..+.+.+|.++++.....+. .....+..++...+. .....-..+|.+.....+
T Consensus 6 ~~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~ 84 (237)
T 3szt_A 6 EGYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLE 84 (237)
T ss_dssp CSHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCC
Confidence 34455677778888887766 88899999999998764432 122333334433221 122344578888888888
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHH
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va 300 (517)
..+..-.+......-.........+....+.+|+...++. .+++.+.... ..++++++..+....
T Consensus 85 ~~p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~g~--------------~g~ls~~~~~-~~~~~~~~~~~~~~~ 149 (237)
T 3szt_A 85 YTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGL--------------ISMLSLVRSS-ESIAATEILEKESFL 149 (237)
T ss_dssp CSCEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEECGGGC--------------EEEEEEEESS-SCCCHHHHHHHHHHH
T ss_pred CCCEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeCCCCC--------------eEEEEEecCC-CcCCHHHHHHHHHHH
Confidence 8887776543211111111122345557777886544333 3444444433 256777666554444
Q ss_pred HHHH
Q 010147 301 DQVA 304 (517)
Q Consensus 301 ~qva 304 (517)
..++
T Consensus 150 ~~l~ 153 (237)
T 3szt_A 150 LWIT 153 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 78
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=75.39 E-value=17 Score=29.01 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhCCceeEEEccCCCCCeEEEEEEeccccccccccccCCchhHHHhhccCceeecCCCchhhhhhccCCCC
Q 010147 164 KTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV 243 (517)
Q Consensus 164 ~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (517)
+...+.+.+.+++ .+.+.|. ..+....+.+...-.+ -++ .+....++.+++.....+... ..... ...
T Consensus 5 ~~~AeiI~~~~~~---aV~ItD~--~~ilA~~G~g~~~~~~--~~i-s~~~~~~i~~~k~~~~~~~~~---~~~~~-~~~ 72 (123)
T 2w1r_A 5 KEYADALYDSLGH---SVLICDR--DVYIAVSGSSKKDYLN--KSI-SEMLERTMDQRSSVLESDAKS---VQLVN-GID 72 (123)
T ss_dssp HHHHHHHHHHHCS---EEEEECS--SBEEEEESSCHHHHBT--CBB-CHHHHHHHHHCSCEEESSCEE---EESBT-TCE
T ss_pred HHHHHHHHHHHCC---eEEEEcC--ccEEEEEecChhhcCC--Ccc-CHHHHHHHHcCCEEEEcCCcc---ccccC-CCC
Confidence 4556677777787 4444443 3332222332211112 234 455778899999888854332 11110 111
Q ss_pred CCceeEEeeeeccccCccccCccccCccccEEEEEEeecCCCCccccchhHHHHHHHHHHHHHH
Q 010147 244 PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVAL 307 (517)
Q Consensus 244 ~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e~~ll~~va~qva~al 307 (517)
.+..+.+..|+...++ ++|++.+-+.. ..+++-+..+.+.+|.-++.-+
T Consensus 73 ~~~~s~ii~PI~~~g~--------------viG~i~l~~~~-~~~~~~~~~la~gla~lls~Qm 121 (123)
T 2w1r_A 73 EDMNSYTVGPIVANGD--------------PIGAVVIFSKD-QTMGEVEHKAVETAAGFLARQM 121 (123)
T ss_dssp EEESEEEEEEEEETTE--------------EEEEEEEEESS-SCCCHHHHHHHHHHHHHHC---
T ss_pred CCeeEEEEEEEEECCE--------------EEEEEEEEEcC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 2446777888754443 36666555433 3489999999888887765443
No 79
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=72.53 E-value=3 Score=40.99 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=36.8
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 454 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 454 ~~D~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.++...+.+++.|+++||+++ ..+.|.|.+. .++.+.+.++|.|+|...
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~--~~~~i~V~DnG~GIp~~~ 79 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN--EDGSLTVEDNGRGIPVDL 79 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC--TTSCEEEEECSSCCCCSE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE--cCCEEEEEEcCCCCCHHH
Confidence 468889999999999999884 3466666664 335677888888888654
No 80
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=69.72 E-value=2.5 Score=37.27 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcC---CCCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 461 MQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 461 ~qvl~NLl~NAik~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
..++..|+.||+++. ....|.|.+ ..++.+.+.++|.++|...
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g~i~V~DnG~GIp~~~ 64 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQSLEVIDDGRGMPVDI 64 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTSCEEEEECSSCCCCSB
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCCEEEEEECCCCcCccc
Confidence 788899999999883 234555555 4455777888898888654
No 81
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=67.22 E-value=3.1 Score=36.59 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHhhcC--C-CCeEEEEEEEcCCCccccCCCCCCCCCC
Q 010147 456 DEKRLMQTILNIVGNAVKFT--K-EGYVSIIASVAKPESLSDWRPPEFYPVS 504 (517)
Q Consensus 456 D~~~l~qvl~NLl~NAik~~--~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 504 (517)
+...+..++..++.||++.. + ...|.|.+.. ++.+.+.++|.++|..
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~--~g~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEK--DNWIKVTDNGRGIPVD 77 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG--GGEEEEEECSSCCCCS
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC--CCeEEEEECCCCcccc
Confidence 56788999999999999862 2 4566666543 3467788888888864
No 82
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=62.22 E-value=6.5 Score=42.55 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=57.8
Q ss_pred ccCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCcc-------ccCccccCccccEEEEEEeecCCCCccccc
Q 010147 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ-------INDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (517)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~ 291 (517)
..+.+.+++.++...+.++...|..+....|++.|.+.++.+ ...|.+|++|.|.+-|.+.+.++ .|++.
T Consensus 696 ~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~~ 772 (795)
T 4a2l_A 696 ETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNPI 772 (795)
T ss_dssp GCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCSS
T ss_pred cccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCCC
Confidence 346678899999999999999999999999999997765433 24688999999999999998876 57654
No 83
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=61.43 E-value=4.3 Score=43.68 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeeccccCcc--------ccCccccCccccEEEEEEeecCCCCccccch
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ--------INDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~--------~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e 292 (517)
.+.+.+++.++..++.++...|..+....|++.|.+.++.+ ...|++|++|.|.+-|.+.+.++ .|+++.
T Consensus 662 ~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 739 (758)
T 3ott_A 662 TNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSNRP 739 (758)
T ss_dssp CSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCSSC
T ss_pred cccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccCcc
Confidence 45688899999999999999999999999999997655433 24588999999999999988776 677654
No 84
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=59.32 E-value=6.3 Score=35.20 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEEEEcCCCccccCCCCCCCCCC
Q 010147 458 KRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVS 504 (517)
Q Consensus 458 ~~l~qvl~NLl~NAik~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 504 (517)
..+.+++..++.||++..- ...|.|.+ ..++.+.+.++|.++|+.
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g~i~V~DnGrGIp~~ 81 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADNSVSVQDDGRGIPTG 81 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTSCEEEEECSSCCCCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCCcEEEEECCcCcccc
Confidence 5688888999999998732 23455544 445677788888888865
No 85
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=58.21 E-value=5.1 Score=39.29 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhcC---CCCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 459 RLMQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 459 ~l~qvl~NLl~NAik~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
-+.+++..++.||++.. ....|.|.+ ..++.+.+.++|.|+|+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i--~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTSCEEEEECSSCCCCSB
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEE--eCCCEEEEEECCCCcccCc
Confidence 67888888888888873 234455554 4456788889999998664
No 86
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=54.39 E-value=38 Score=34.39 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=40.6
Q ss_pred HhHHHHhHHHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccC
Q 010147 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (517)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (517)
+++.+..+....+...++.+.|..+.+.+....+.+++++|+++++..+
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 3444555567788888999999999999999999999999999999753
No 87
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=53.00 E-value=10 Score=33.91 Aligned_cols=50 Identities=24% Similarity=0.104 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 456 DEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 456 D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
+..-|.+++..++.||++..- .+.-.|.+....++.+.+.++|.++|+..
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCccccc
Confidence 456788899999999998732 12233444444456777888888888654
No 88
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=51.70 E-value=7 Score=38.00 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCccccCCCCCCCCC
Q 010147 456 DEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPEFYPV 503 (517)
Q Consensus 456 D~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~ 503 (517)
|+.-+..++..|+.||++..- .+.-.|.+....++.+.+.++|.|+|+
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~ 75 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA 75 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH
Confidence 667899999999999999632 223344444445567778888888874
No 89
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=48.97 E-value=12 Score=19.65 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhHHH
Q 010147 57 QFGSFIILCGLTHF 70 (517)
Q Consensus 57 ~~~~fi~~cg~~h~ 70 (517)
+-++||+-|.+.|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 45789999998874
No 90
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=48.21 E-value=11 Score=40.54 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=55.3
Q ss_pred eeecCCCchhhhhhccCCCCCCceeEEeeeeccccCc-------cccCccccCccccEEEEEEeecCCCCccccch
Q 010147 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNF-------QINDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (517)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~e 292 (517)
+.+++.++...+.++...|..+....|++.|.+.++. ....|++|++|.|.+-|.+.+.++ .|+...
T Consensus 694 i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 694 IELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp EEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred EEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 7788888888999999999999999999999765432 235789999999999999998876 576543
No 91
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=47.60 E-value=6.5 Score=38.55 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhc---CCCCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 461 MQTILNIVGNAVKF---TKEGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 461 ~qvl~NLl~NAik~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.+++..++.||++. .....|.|.+ ..++.+.+.++|.|+|...
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i--~~~g~I~V~DnG~GIp~~~ 78 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQSLEVIDDGRGMPVDI 78 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTSCEEEEECSSCCCCSB
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEE--ecCCEEEEEECCCCcCccc
Confidence 44555555555554 2244555555 3445777889999998654
No 92
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=47.01 E-value=1.4e+02 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=23.2
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010147 74 WTFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (517)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ta~vs~~~a~~l~~ 107 (517)
..||..+.+..|..+.+..-..++.++.|+-+.+
T Consensus 137 VKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 137 VKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp HHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777776666666666666666665
No 93
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=44.01 E-value=1.6e+02 Score=25.41 Aligned_cols=93 Identities=22% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHHhhcc---cc-hhhHHHHH----HHH
Q 010147 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT---VH-SKAVAVVM----TIA 90 (517)
Q Consensus 19 ~~~~~~~~~ia~ay~~i~~~l~~f~~~~~~~~~~~~~~~~~~fi~~cg~~h~~~~~~~~---~~-~~~~~~~~----~~~ 90 (517)
++|.+.|..++.++..+. ++|-++++--...++++-...=.++...-|.++-+-+| -| +.+.++-+ +..
T Consensus 88 p~q~lldy~laf~~~Gla---G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~ 164 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSLGIA---GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGIS 164 (192)
T ss_dssp HHHHHHHHTHHHHHGGGG---GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHH
Confidence 458889999998888876 56655543322233332122222333445665533333 22 11111212 223
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 010147 91 KMACAFVSCITALMLVHIIPDLLS 114 (517)
Q Consensus 91 ~~~ta~vs~~~a~~l~~l~p~~l~ 114 (517)
....+++++.....+.+-.|+.+.
T Consensus 165 ~l~~~ii~~iv~~lL~k~~~~~~~ 188 (192)
T 3rlb_A 165 GILTAIAAFVILIIFVKKFPKLFI 188 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 444555556666666666666554
No 94
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=37.06 E-value=12 Score=33.44 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhcCC
Q 010147 462 QTILNIVGNAVKFTK 476 (517)
Q Consensus 462 qvl~NLl~NAik~~~ 476 (517)
.++.+|+.||++|..
T Consensus 29 ~~lrELI~NA~DA~a 43 (220)
T 2wer_A 29 IFLREIVSNASDALD 43 (220)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 578899999999853
No 95
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=35.06 E-value=17 Score=32.77 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcC
Q 010147 462 QTILNIVGNAVKFT 475 (517)
Q Consensus 462 qvl~NLl~NAik~~ 475 (517)
.++.+|+.||+++.
T Consensus 50 ~~lrELI~NA~DA~ 63 (235)
T 2ior_A 50 IFLRELISNASDAA 63 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHH
Confidence 57899999999986
No 96
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=34.35 E-value=24 Score=34.60 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhcC---C-CCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 457 EKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 457 ~~~l~qvl~NLl~NAik~~---~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
..-|.+++..++.||++.. + ...|.|.+..+ ++.+.+.++|.|+|+..
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~-~~~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE-NNLISIWNNGKGIPVVE 101 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT-TTEEEEEEESSCCCCSE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC-CCEEEEEECCCcccCcc
Confidence 4578999999999999975 2 35566665432 25677888899988654
No 97
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=34.32 E-value=45 Score=28.80 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010147 340 AIHARNDFRAVMNHEMRTLMHAIIAL 365 (517)
Q Consensus 340 ~~~~~~~~~~~iaHelrnPL~~I~~~ 365 (517)
..+...++...++|.+......+...
T Consensus 28 r~~la~~l~~~l~~~L~~i~~~~~~~ 53 (218)
T 3ehh_A 28 RQRMARDLVDTLGQKLSLMGLKSDLA 53 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455667777777776655554433
No 98
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=34.14 E-value=2e+02 Score=23.71 Aligned_cols=111 Identities=8% Similarity=-0.057 Sum_probs=59.5
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCC---CCCeEEEEEEeccccc---cccccccCCchhHHHhhc
Q 010147 147 RMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR---TGLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNS 220 (517)
Q Consensus 147 ~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~---~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 220 (517)
.++-..+....+.+++. ..+..+.+.+|.+++++....+ ......+..++..++. .....-..+|.+.....+
T Consensus 11 ~~~l~~l~~a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~~~~yp~~W~~~Y~~~~y~~~DPvv~~~~~~ 89 (171)
T 2avx_A 11 RTMLLRFQRMETAEEVY-HEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFS 89 (171)
T ss_dssp HHHHHHHHHTCSHHHHH-HHHHHHHHTTTCSCEEEEEEECCTTSCCEEEEEECCCHHHHHHHHHTTGGGTCGGGCTTTCT
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHHHcCCCeEEEEeecCCCCCCCcEehhcCCCHHHHHHHHHCCCeEeChhhhhhcCC
Confidence 34445566677766666 5577778889999998875321 1222233334433221 123344567777777777
Q ss_pred cCceeecCCCchhhhhhccCCCCCCceeEEeeeecccc
Q 010147 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLS 258 (517)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 258 (517)
..+..-.+......-.........+....+.+|+...+
T Consensus 90 ~~p~~W~~~~~~~~~~~~~~a~~~Gl~~G~t~p~~~~~ 127 (171)
T 2avx_A 90 QGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPE 127 (171)
T ss_dssp TSEEECCTTTTSSCHHHHHHHHHHTCCEEEEEEECCTT
T ss_pred CCCEecCchhccchHHHHHHHHHcCCCcEEEEEeecCC
Confidence 77776654432111111111122344667777764443
No 99
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=34.01 E-value=1.9e+02 Score=26.05 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccC-CCCCeE----E-EEEEeccccc---cccccccCCchhH
Q 010147 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS-RTGLNL----E-LSYTLNNQIQ---IGSSVPINLPIVT 215 (517)
Q Consensus 145 ~l~~l~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~-~~~~~l----~-~~~~~~~~~~---~~~~~~~~~~~~~ 215 (517)
.+.++-..+....+.+++. ..+..+.+.+|.++++..... .+.... . +..++...+. .....-..+|.+.
T Consensus 23 ~l~~~l~~l~~a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~~~i~~~yp~~W~~~Y~~~~y~~~DPvv~ 101 (265)
T 3qp6_A 23 TLLEWIHMAGHIETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMR 101 (265)
T ss_dssp HHHHHHHHHTTCCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEEEEEEEEESSCCHHHHHHHHHTTGGGTCGGGG
T ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccccccceeecCCcHHHHHHHHHCcCcccChHHH
Confidence 3666677788888888887 778899999999999875432 222211 1 2222222211 1123445677777
Q ss_pred HHhhccCceeecC
Q 010147 216 DVFNSAQAMRLPY 228 (517)
Q Consensus 216 ~~~~~~~~~~~~~ 228 (517)
... +..+....+
T Consensus 102 ~~~-~~~p~~W~~ 113 (265)
T 3qp6_A 102 IHL-GQGPVIWEE 113 (265)
T ss_dssp CCT-TSSCEEHHH
T ss_pred Hhc-CCCCEEECC
Confidence 777 666665543
No 100
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=32.07 E-value=31 Score=33.79 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCC-CCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 461 MQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 461 ~qvl~NLl~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.+++..++.||++..- ++.-.|.+....++.+.++++|.|+|+..
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~ 97 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDI 97 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCccc
Confidence 6778888888887621 22233444445556788889999998654
No 101
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=29.87 E-value=22 Score=32.72 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCC---------------CCeEEEEEEEcCC-CccccCCCCCCCC
Q 010147 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKP-ESLSDWRPPEFYP 502 (517)
Q Consensus 463 vl~NLl~NAik~~~---------------~g~i~i~~~~~~~-~~~~~~~~~~~~~ 502 (517)
++.+|+.||++|.. .+.+.|.+....+ ..+.+.++|.|.+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt 87 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMT 87 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCC
Confidence 78899999999842 2334444443332 2345567776654
No 102
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.52 E-value=69 Score=20.27 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=8.6
Q ss_pred HHHHhHHHH-HHHHHHhcC
Q 010147 30 LAYFSIPVE-LIYFVQKSA 47 (517)
Q Consensus 30 ~ay~~i~~~-l~~f~~~~~ 47 (517)
++.+.+-.. ++||++||+
T Consensus 21 v~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 444444444 445555554
No 103
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.25 E-value=5e+02 Score=25.96 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=4.8
Q ss_pred cCccccCccc
Q 010147 263 NDWPELPAKS 272 (517)
Q Consensus 263 ~~~~~l~~~~ 272 (517)
..||...+.+
T Consensus 31 ~~WPfCaDeD 40 (562)
T 3ghg_A 31 SDWPFCSDED 40 (562)
T ss_dssp CCCCBCCSSS
T ss_pred CCCCcccccc
Confidence 3455544444
No 104
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E*
Probab=24.55 E-value=2.9e+02 Score=22.63 Aligned_cols=109 Identities=9% Similarity=0.008 Sum_probs=60.0
Q ss_pred HHHHHcccCHHHHHHHHHHHHHhhhCCceeEEEccCCC---CCeEEEEEEeccccc---cccccccCCchhHHHhhccCc
Q 010147 150 THEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNSAQA 223 (517)
Q Consensus 150 ~~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~---~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 223 (517)
...+....+.+++. ..+..+.+.+|.++++....... .....+..++..++. .....-..+|.+.....+..+
T Consensus 7 ~~~l~~a~s~~~l~-~~l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~~~nyP~~W~~~Y~~~~y~~~DPvv~~~~~~~~P 85 (173)
T 3ix3_A 7 FLELERSSGKLEWS-AILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLP 85 (173)
T ss_dssp CHHHHHCCHHHHHH-HHHHHHHHHTTCSEEEEEEECTTCCCGGGSEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCSSC
T ss_pred HHHHHcCCCHHHHH-HHHHHHHHHCCCCeEEEEeecCCCCcccceeEecCCCHHHHHHHHHCcCeecCchhhhhccCCCC
Confidence 34455555555555 55677788899999988765432 122233334433221 123344578888998888888
Q ss_pred eeecCCCc--hhhhhhccCCCCCCceeEEeeeeccccC
Q 010147 224 MRLPYNCP--LARIRLLVGRYVPPDIVAVRVPLLHLSN 259 (517)
Q Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 259 (517)
..-.+... ...-.........+....+.+|+...++
T Consensus 86 ~~W~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~~g 123 (173)
T 3ix3_A 86 IFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARG 123 (173)
T ss_dssp EECCGGGCCSHHHHHHHHHHHHTTCCSEEEEEEECTTC
T ss_pred eEeCcccccChhHHHHHHHHHHcCCCceEEEEecCCCC
Confidence 77765321 1111111122234556777888754444
No 105
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=23.81 E-value=3.4e+02 Score=23.15 Aligned_cols=24 Identities=4% Similarity=-0.083 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHhhhHHHHHHHHh
Q 010147 11 WPPDELLVRYQYISDILIALAYFS 34 (517)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ia~ay~~ 34 (517)
|+...++=-+|.+|-.+.+++.+.
T Consensus 65 ~qlt~~~SIlHRITGv~L~~~l~l 88 (188)
T 3vr8_C 65 PQMTWMVSGLHRVTGCAMAGTLLI 88 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444446799998877755443
No 106
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=23.79 E-value=31 Score=31.61 Aligned_cols=41 Identities=10% Similarity=-0.060 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEEcCC-CccccCCCCCCCC
Q 010147 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKP-ESLSDWRPPEFYP 502 (517)
Q Consensus 462 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~-~~~~~~~~~~~~~ 502 (517)
.++.+|+.||+++.. .+.+.|.+....+ ..+.+.++|.|.+
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs 127 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 127 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCC
Confidence 478999999999853 2455555543332 2344556665543
No 107
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=22.90 E-value=35 Score=30.61 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhcC
Q 010147 462 QTILNIVGNAVKFT 475 (517)
Q Consensus 462 qvl~NLl~NAik~~ 475 (517)
.++.+|+.||+++.
T Consensus 35 ~~lrELI~NA~DA~ 48 (236)
T 2gqp_A 35 IFLRELISNASDAL 48 (236)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhh
Confidence 56888999999984
No 108
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=21.79 E-value=2.3e+02 Score=23.88 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010147 364 ALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (517)
Q Consensus 364 ~~~~~l~~~~~~-~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~ 406 (517)
.+..+....-.. +.....++.|...+.++..-++++++|++--
T Consensus 39 ~Lm~fvs~~WR~~~~le~~i~~I~~a~~~v~~Sl~efL~FArga 82 (176)
T 2l81_A 39 SLMALVTTDWRCYGYMERHINEIRTAVDKVELFLKEYLHFVKGA 82 (176)
T ss_dssp HHHHHCSSCTTCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333 3456689999999999999999999999853
No 109
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=21.74 E-value=3e+02 Score=21.69 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=13.8
Q ss_pred CCchhHHHHHHHhhhHHHHHH
Q 010147 11 WPPDELLVRYQYISDILIALA 31 (517)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ia~a 31 (517)
|+.+...--+|.+|-.+.++.
T Consensus 20 ~~~t~~~silhRiTGv~L~~~ 40 (129)
T 2wdq_C 20 FPITAIASILHRVSGVITFVA 40 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 455544456799998777654
No 110
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=20.48 E-value=58 Score=32.03 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcC---C-CCeEEEEEEEcCCCccccCCCCCCCCCCC
Q 010147 458 KRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPPEFYPVST 505 (517)
Q Consensus 458 ~~l~qvl~NLl~NAik~~---~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.-|.+++..++.||++.. + ...|.|.+..+ ++.+.+.++|.|+|+..
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d-~~sI~V~DnGrGIPv~~ 113 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE-EHTIEVKNDGKGIPIEI 113 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT-TTEEEEEEESSCCCCSB
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECC-CCEEEEEECCCcccCcc
Confidence 468888899999998754 2 24455554422 24677888888888653
Done!