BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010150
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 16 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDS 75
+L+ DW +++CD+I QAK A+ +KK++ KNP V L AL +E++ KNCG +
Sbjct: 20 LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT 79
Query: 76 VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135
V ++ + + E+ ++K++ ++NVR KIL LI W AF +Y Y ++
Sbjct: 80 VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKV 138
Query: 136 AGVEFPPRAENSVPF 150
G FP E+ F
Sbjct: 139 EGHVFPEFKESDAMF 153
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens
pdb|1ELK|B Chain B, Vhs Domain Of Tom1 Protein From H. Sapiens
Length = 157
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQ 79
DWA+N+E+CD+IN KDAL+ +KKR+ G+KN +LAL LET KNCG
Sbjct: 33 DWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92
Query: 80 IIERDILHE-MVKIV--KKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSA 136
+ +D + +V+ + K P V +K+L LI +W +AF Y +LR
Sbjct: 93 VASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPD-LTGVVTIYEDLRRK 151
Query: 137 GVEFP 141
G+EFP
Sbjct: 152 GLEFP 156
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 16 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDS 75
+ + PDW + +CD IN K+A +KK++ S NP +L LE+I KNCG
Sbjct: 17 LRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP 76
Query: 76 VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135
V +++ ++ ++ P NVR+K+L L+ TW AF +Y L++
Sbjct: 77 VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS-DKYQAIKDTMTILKA 135
Query: 136 AGVEFPPRAENSVPF 150
G FP E F
Sbjct: 136 KGHTFPELREADAMF 150
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal
Transducing Adaptor Molecule 2
pdb|2L0T|B Chain B, Solution Structure Of The Complex Of Ubiquitin And The Vhs
Domain Of Stam2
Length = 163
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DW++ +++CD + P AKD LK + KR+ K P V L AL L NCG ++
Sbjct: 32 DWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91
Query: 81 IERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQY---YAAYNELRSAG 137
RD E+ ++K K V EK+ L+ W E F + PQ+ A ++ G
Sbjct: 92 CSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKSMKEEG 147
Query: 138 VEFPP 142
+ FPP
Sbjct: 148 ITFPP 152
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
pdb|3RRU|B Chain B, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
Length = 152
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSK-NPKVQLLALFALETISKNCGDSVFQQ 79
DW +CD+IN KDA+K LKKR+ N K L L ++ +NCG S
Sbjct: 33 DWGQFXHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDXCVQNCGPSFQSL 92
Query: 80 IIERDILHE-MVKIVKKKPD--LNVREKILILIDTWQEAFGG 118
I++++ + E +VK++ + + L+++ +IL I TW + F G
Sbjct: 93 IVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|D Chain D, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|B Chain B, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|C Chain C, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 140
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 15 DMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGD 74
+M DW + +++CD + KD L+ + +R+ K+P V + AL L NCG
Sbjct: 16 EMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK 75
Query: 75 SVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQY---YAAYN 131
++ RD E+ ++ K V EK+ L+ W + F PQ A
Sbjct: 76 IFHLEVCSRDFASEVSNVLNKGHP-KVCEKLKALMVEWTDEFKND----PQLSLISAMIK 130
Query: 132 ELRSAGVEFP 141
L+ GV FP
Sbjct: 131 NLKEQGVTFP 140
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
Length = 103
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 175 LQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLL 234
L S+ G +E++ G V+ EML L E E++ +L CR+ Q+RV+ L
Sbjct: 3 LGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLEL 62
Query: 235 VNNTADEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQSTE 275
+ A+E+L + L +NDNL V +H+ + T Q+T+
Sbjct: 63 IPQIANEQLTEELLIVNDNLNNVFLRHERFER-FRTGQTTK 102
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JUQ|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
Length = 171
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DW I CD IN + + A+++L ++ S L AL LE KNCG ++
Sbjct: 30 DWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACXKNCGRRFHNEV 89
Query: 81 IERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAF 116
+ L+E++K+V K V+ K++ L+ +W A
Sbjct: 90 GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTXAL 130
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|B Chain B, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|C Chain C, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|D Chain D, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
Length = 171
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DW I CD IN + + A+++L ++ S L AL LE KNCG ++
Sbjct: 30 DWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV 89
Query: 81 IERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAF 116
+ L+E++K+V K V+ K++ L+ +W A
Sbjct: 90 GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain
pdb|1MHQ|B Chain B, Crystal Structure Of Human Gga2 Vhs Domain
Length = 148
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DW+ C+ +N DP A +L ++ S K L AL LE +CG+ ++
Sbjct: 18 DWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV 77
Query: 81 IERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAF 116
+ L+E++K++ K V+ +++ ++ +W F
Sbjct: 78 AKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|B Chain B, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|C Chain C, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|D Chain D, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
Length = 158
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DWA C+ +N D A ++L ++ S + AL LET K+CG ++
Sbjct: 27 DWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 86
Query: 81 IERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135
+ L+E++K+V K V+ KIL L+ +W G P + AY L+
Sbjct: 87 GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW--TVGLPEE--VKIAEAYQMLKK 142
Query: 136 AGV 138
G+
Sbjct: 143 QGI 145
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2S|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2T|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2T|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2U|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2U|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2V|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2V|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2W|A Chain A, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
pdb|3G2W|B Chain B, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DWA C+ +N D A ++L ++ S + AL LET K+CG ++
Sbjct: 28 DWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 87
Query: 81 IERDILHEMVKIVK-----KKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135
+ L+E++K+V + V+ KIL L+ +W G P + AY L+
Sbjct: 88 GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW--TVGLPEE--VKIAEAYQMLKK 143
Query: 136 AGV 138
G+
Sbjct: 144 QGI 146
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain.
pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1JWG|B Chain B, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1UJJ|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJJ|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJK|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
pdb|1UJK|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
Length = 147
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80
DWA C+ +N D A ++L ++ S + AL LET K+CG ++
Sbjct: 26 DWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 85
Query: 81 IERDILHEMVKIVKKK-----PDLNVREKILILIDTW 112
+ L+E++K+V K V+ KIL L+ +W
Sbjct: 86 GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 122
>pdb|3IYN|N Chain N, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
Length = 585
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 18/104 (17%)
Query: 168 DAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQE-------IIVDL 220
D A++A+LQS SGL+ + R +M+ + +L ++NP+A +Q+ I++
Sbjct: 7 DPAVRAALQSQPSGLNSTDDWRQ------VMDRIMSLTARNPDAFRQQPQANRLSAILEA 60
Query: 221 VDQCRS--YQKRVMLLVNNTADEELLC---QGLALNDNLQRVLR 259
V R+ ++V+ +VN A+ + GL + LQRV R
Sbjct: 61 VVPARANPTHEKVLAIVNALAENRAIRPDEAGLVYDALLQRVAR 104
>pdb|1YD8|G Chain G, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|H Chain H, Complex Of Human Gga3 Gat Domain And Ubiquitin
Length = 98
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 196 VLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTAD-EELLCQGLALNDNL 254
+L EML ++ +E++ +L DQC + ++ + L + T D + L L +DNL
Sbjct: 24 LLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNL 83
Query: 255 QRVLRQHDDIAKG 267
RV+ + I +G
Sbjct: 84 SRVINSYKTIIEG 96
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 72 CGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112
C DS F++ + +++KI+K+ +LN + L LID+W
Sbjct: 432 CKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSW 472
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 445 FFEQNHAFPGSSARGSAASYDSLVGQTQNLALNSSNPKK 483
+F+ + A P +R A S D L+GQT L LN N K
Sbjct: 17 YFQGHMAAPFDKSRNVAQSIDQLIGQTPALYLNKLNNTK 55
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 156 TQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSK 207
T PIV T+ DD+ I+ L+S +G I+R K L +L E A K
Sbjct: 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPK-LKTILTEFCAAYQGK 131
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 156 TQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSK 207
T PIV T+ DD+ I+ L+S +G I+R K L +L E A K
Sbjct: 80 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPK-LKTILTEFCAAYQGK 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,921,161
Number of Sequences: 62578
Number of extensions: 536104
Number of successful extensions: 949
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 23
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)