Query 010150
Match_columns 516
No_of_seqs 229 out of 737
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 21:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1087 Cytosolic sorting prot 100.0 2E-66 4.3E-71 551.8 36.1 264 4-267 1-277 (470)
2 KOG1086 Cytosolic sorting prot 100.0 5.5E-44 1.2E-48 367.9 29.2 268 3-274 7-307 (594)
3 cd03569 VHS_Hrs_Vps27p VHS dom 100.0 2E-42 4.4E-47 318.1 17.9 141 1-142 1-141 (142)
4 cd03568 VHS_STAM VHS domain fa 100.0 3.6E-42 7.9E-47 317.1 17.9 138 5-143 1-138 (144)
5 cd03565 VHS_Tom1 VHS domain fa 100.0 4.2E-41 9.1E-46 309.1 16.7 137 4-141 1-141 (141)
6 cd03567 VHS_GGA VHS domain fam 100.0 1.7E-40 3.6E-45 304.3 16.6 132 4-139 1-137 (139)
7 smart00288 VHS Domain present 100.0 1.7E-38 3.7E-43 288.8 16.2 132 5-137 1-133 (133)
8 PF00790 VHS: VHS domain; Int 100.0 1.5E-37 3.1E-42 284.6 17.2 135 2-137 3-140 (140)
9 cd03561 VHS VHS domain family; 100.0 1E-36 2.2E-41 276.9 16.1 131 5-135 1-133 (133)
10 KOG2199 Signal transducing ada 100.0 5E-36 1.1E-40 307.0 23.1 263 2-268 6-368 (462)
11 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 2E-25 4.4E-30 197.1 13.0 109 5-113 1-114 (115)
12 KOG1818 Membrane trafficking a 99.9 3.4E-23 7.4E-28 225.4 10.3 149 1-151 5-154 (634)
13 PF03127 GAT: GAT domain; Int 99.8 3.7E-19 8.1E-24 154.5 9.8 91 181-271 7-97 (100)
14 PF01417 ENTH: ENTH domain; I 98.3 7.4E-06 1.6E-10 73.7 11.1 107 3-112 2-119 (125)
15 cd03572 ENTH_epsin_related ENT 98.1 2.7E-05 5.8E-10 70.6 11.3 103 7-111 4-116 (122)
16 cd03562 CID CID (CTD-Interacti 98.0 2.6E-05 5.6E-10 68.8 8.3 107 5-116 4-110 (114)
17 cd03571 ENTH_epsin ENTH domain 97.9 0.00013 2.7E-09 66.3 12.0 107 4-113 1-117 (123)
18 smart00273 ENTH Epsin N-termin 97.9 0.00026 5.6E-09 63.9 12.6 110 3-112 1-117 (127)
19 KOG2056 Equilibrative nucleosi 97.5 0.00094 2E-08 69.8 11.5 111 4-115 21-139 (336)
20 cd03564 ANTH_AP180_CALM ANTH d 97.5 0.00065 1.4E-08 60.6 8.8 78 5-82 1-78 (117)
21 KOG0251 Clathrin assembly prot 97.0 0.034 7.3E-07 61.4 17.3 82 3-84 22-104 (491)
22 smart00582 RPR domain present 96.5 0.011 2.5E-07 52.3 8.0 91 24-115 15-108 (121)
23 KOG2374 Uncharacterized conser 95.5 0.16 3.5E-06 55.5 12.4 137 4-144 7-153 (661)
24 PF07651 ANTH: ANTH domain; I 93.1 0.32 6.9E-06 49.2 7.7 77 4-81 3-80 (280)
25 PF13646 HEAT_2: HEAT repeats; 92.4 2.1 4.5E-05 34.8 10.5 86 6-109 2-87 (88)
26 KOG2057 Predicted equilibrativ 91.6 1.1 2.5E-05 46.9 9.6 105 5-111 24-140 (499)
27 PF12348 CLASP_N: CLASP N term 91.3 2.5 5.4E-05 41.0 11.4 79 39-118 129-210 (228)
28 KOG2160 Armadillo/beta-catenin 88.8 2 4.4E-05 45.5 8.9 93 23-117 105-199 (342)
29 PF12717 Cnd1: non-SMC mitotic 85.9 8.7 0.00019 36.5 10.7 88 23-116 7-94 (178)
30 cd00020 ARM Armadillo/beta-cat 82.2 12 0.00026 31.3 9.1 69 41-111 49-117 (120)
31 PF12348 CLASP_N: CLASP N term 81.6 10 0.00022 36.8 9.4 96 18-116 17-125 (228)
32 PF04818 CTD_bind: RNA polymer 80.2 5 0.00011 31.7 5.6 54 60-115 3-60 (64)
33 smart00229 RasGEFN Guanine nuc 78.9 35 0.00077 30.1 11.3 106 3-110 8-124 (127)
34 PF12210 Hrs_helical: Hepatocy 78.7 12 0.00025 32.9 7.7 54 187-240 4-57 (96)
35 PF13646 HEAT_2: HEAT repeats; 76.8 13 0.00028 30.1 7.3 57 43-112 1-58 (88)
36 cd06224 REM Guanine nucleotide 71.3 61 0.0013 28.0 10.6 85 5-94 2-100 (122)
37 cd00020 ARM Armadillo/beta-cat 71.2 15 0.00032 30.8 6.5 71 42-114 8-78 (120)
38 PF08167 RIX1: rRNA processing 71.0 34 0.00074 32.2 9.5 76 39-115 19-98 (165)
39 KOG2071 mRNA cleavage and poly 64.5 11 0.00023 42.7 5.3 77 36-114 35-111 (579)
40 PF05004 IFRD: Interferon-rela 63.9 1.2E+02 0.0026 31.6 12.8 104 5-111 45-157 (309)
41 PF01602 Adaptin_N: Adaptin N 63.1 19 0.0004 39.2 6.9 104 5-112 115-219 (526)
42 PF11841 DUF3361: Domain of un 62.1 31 0.00067 33.0 7.2 69 43-113 60-130 (160)
43 PF06812 ImpA-rel_N: ImpA-rela 60.8 40 0.00086 26.7 6.6 59 21-79 1-60 (62)
44 PF01602 Adaptin_N: Adaptin N 60.2 48 0.001 36.0 9.4 39 30-68 68-106 (526)
45 KOG1077 Vesicle coat complex A 60.0 41 0.00089 39.2 8.8 77 22-106 92-169 (938)
46 KOG1820 Microtubule-associated 58.2 67 0.0014 38.2 10.5 92 22-118 353-447 (815)
47 PRK09687 putative lyase; Provi 56.2 99 0.0021 31.8 10.4 72 39-110 190-278 (280)
48 PF00618 RasGEF_N: RasGEF N-te 56.2 33 0.00072 29.2 5.9 76 3-80 5-95 (104)
49 PF06798 PrkA: PrkA serine pro 55.8 9.3 0.0002 39.0 2.8 78 38-117 38-118 (254)
50 KOG1293 Proteins containing ar 54.8 45 0.00097 38.4 8.0 88 27-115 442-534 (678)
51 PF11707 Npa1: Ribosome 60S bi 53.8 79 0.0017 33.1 9.4 52 43-94 58-111 (330)
52 PRK01005 V-type ATP synthase s 53.0 21 0.00045 35.4 4.6 88 55-142 63-165 (207)
53 PF06160 EzrA: Septation ring 52.1 4E+02 0.0087 30.2 15.2 80 60-144 161-249 (560)
54 KOG1077 Vesicle coat complex A 51.0 45 0.00097 38.9 7.3 73 38-114 326-398 (938)
55 smart00509 TFS2N Domain in the 50.3 82 0.0018 26.1 7.1 23 94-116 51-73 (75)
56 KOG1105 Transcription elongati 49.1 82 0.0018 33.1 8.4 27 92-118 54-80 (296)
57 PF10508 Proteasom_PSMB: Prote 48.6 1.2E+02 0.0027 33.7 10.3 92 21-114 51-148 (503)
58 COG4477 EzrA Negative regulato 47.0 2.4E+02 0.0052 32.0 11.9 120 19-144 117-252 (570)
59 PF11698 V-ATPase_H_C: V-ATPas 46.8 77 0.0017 28.9 6.9 72 39-113 41-114 (119)
60 PF02854 MIF4G: MIF4G domain; 46.8 1E+02 0.0022 28.5 8.1 87 24-110 106-204 (209)
61 PF12783 Sec7_N: Guanine nucle 44.9 1E+02 0.0023 28.6 7.9 63 54-117 35-105 (168)
62 smart00543 MIF4G Middle domain 44.8 79 0.0017 29.4 7.1 69 24-93 99-170 (200)
63 KOG1062 Vesicle coat complex A 42.2 1.4E+02 0.0031 35.3 9.6 87 25-113 163-262 (866)
64 cd00183 TFIIS_I N-terminal dom 42.2 77 0.0017 26.1 5.8 24 93-116 52-75 (76)
65 cd08779 Death_PIDD Death Domai 41.5 64 0.0014 27.4 5.3 38 97-137 37-74 (86)
66 KOG2075 Topoisomerase TOP1-int 40.9 1.5E+02 0.0032 33.2 9.1 97 19-116 184-296 (521)
67 cd08306 Death_FADD Fas-associa 40.9 71 0.0015 27.0 5.5 69 64-137 4-73 (86)
68 PF13513 HEAT_EZ: HEAT-like re 40.1 50 0.0011 24.7 4.1 52 55-109 1-52 (55)
69 COG5369 Uncharacterized conser 39.3 82 0.0018 35.9 6.9 108 3-113 430-544 (743)
70 PTZ00429 beta-adaptin; Provisi 38.8 2.6E+02 0.0056 33.1 11.3 86 20-109 232-321 (746)
71 PRK04778 septation ring format 38.3 6.4E+02 0.014 28.6 14.7 98 40-143 146-252 (569)
72 PLN03200 cellulose synthase-in 38.0 1.3E+02 0.0029 39.3 9.4 70 42-112 190-259 (2102)
73 PF14726 RTTN_N: Rotatin, an a 37.4 1.2E+02 0.0027 26.6 6.5 68 39-110 28-96 (98)
74 KOG2021 Nuclear mRNA export fa 36.9 2.8E+02 0.006 33.0 10.7 111 4-117 4-131 (980)
75 PF14523 Syntaxin_2: Syntaxin- 36.2 2.3E+02 0.0049 24.0 8.0 79 186-265 4-91 (102)
76 KOG0151 Predicted splicing reg 35.3 2.6E+02 0.0056 32.9 10.1 121 4-133 435-569 (877)
77 PF03670 UPF0184: Uncharacteri 35.1 1.1E+02 0.0024 26.2 5.7 55 183-239 24-78 (83)
78 PF12755 Vac14_Fab1_bd: Vacuol 34.1 2.8E+02 0.006 24.1 8.2 65 39-106 25-89 (97)
79 PTZ00429 beta-adaptin; Provisi 33.2 2E+02 0.0042 34.1 9.2 68 9-76 145-214 (746)
80 PF12333 Ipi1_N: Rix1 complex 33.0 3.3E+02 0.0071 23.7 9.2 51 43-94 13-63 (102)
81 cd08319 Death_RAIDD Death doma 33.0 1.2E+02 0.0025 25.9 5.5 38 97-138 37-74 (83)
82 PF02985 HEAT: HEAT repeat; I 32.8 1.1E+02 0.0024 20.5 4.4 30 43-72 2-31 (31)
83 PF10508 Proteasom_PSMB: Prote 32.8 3.2E+02 0.007 30.4 10.5 92 22-114 118-231 (503)
84 PF12530 DUF3730: Protein of u 32.8 5.1E+02 0.011 25.7 11.0 56 16-71 92-152 (234)
85 PF14500 MMS19_N: Dos2-interac 31.8 2.4E+02 0.0052 28.9 8.6 76 40-117 79-156 (262)
86 PF12783 Sec7_N: Guanine nucle 30.7 2.8E+02 0.006 25.8 8.3 81 43-132 75-157 (168)
87 COG4342 Uncharacterized protei 30.6 4.5E+02 0.0098 27.3 10.0 74 35-115 56-140 (291)
88 PF00618 RasGEF_N: RasGEF N-te 30.3 1.7E+02 0.0038 24.7 6.3 55 77-134 34-102 (104)
89 PF14555 UBA_4: UBA-like domai 30.2 80 0.0017 23.1 3.6 34 230-263 3-38 (43)
90 cd05391 RasGAP_p120GAP p120GAP 30.2 6.8E+02 0.015 26.4 14.4 49 190-238 206-254 (315)
91 smart00005 DEATH DEATH domain, 29.2 1E+02 0.0023 25.2 4.6 34 100-137 44-77 (88)
92 PF00531 Death: Death domain; 28.8 1.7E+02 0.0037 23.4 5.8 32 101-136 39-70 (83)
93 PF04740 LXG: LXG domain of WX 27.7 4.6E+02 0.01 24.9 9.5 79 188-266 71-166 (204)
94 KOG1820 Microtubule-associated 27.5 2.9E+02 0.0063 33.1 9.3 96 18-116 263-367 (815)
95 PF07197 DUF1409: Protein of u 26.7 58 0.0013 25.5 2.4 29 65-94 7-37 (51)
96 PF01603 B56: Protein phosphat 25.9 2.9E+02 0.0063 30.0 8.5 77 30-108 244-320 (409)
97 cd08777 Death_RIP1 Death Domai 25.8 86 0.0019 26.7 3.5 69 65-136 5-74 (86)
98 PF07106 TBPIP: Tat binding pr 25.5 5.6E+02 0.012 24.0 10.0 81 185-265 86-168 (169)
99 PF09758 FPL: Uncharacterised 25.4 1.9E+02 0.0042 27.4 6.1 50 71-120 13-62 (149)
100 cd08317 Death_ank Death domain 25.3 1.6E+02 0.0034 24.6 5.0 35 99-137 41-75 (84)
101 COG3002 Uncharacterized protei 25.1 6E+02 0.013 29.9 10.7 133 4-140 58-205 (880)
102 COG1059 Thermostable 8-oxoguan 24.6 3E+02 0.0064 27.4 7.3 75 20-101 37-117 (210)
103 PF12830 Nipped-B_C: Sister ch 24.5 3.2E+02 0.0068 26.2 7.6 63 48-117 15-77 (187)
104 KOG4535 HEAT and armadillo rep 24.5 63 0.0014 36.3 3.0 45 28-72 131-181 (728)
105 PF11099 M11L: Apoptosis regul 24.3 2.4E+02 0.0051 27.3 6.5 71 21-91 41-115 (167)
106 PF07899 Frigida: Frigida-like 24.3 8.2E+02 0.018 25.5 11.1 46 93-138 96-142 (290)
107 PF07531 TAFH: NHR1 homology t 24.0 95 0.0021 27.3 3.5 33 83-115 7-39 (96)
108 KOG1062 Vesicle coat complex A 23.5 7.3E+02 0.016 29.7 11.2 38 98-137 398-435 (866)
109 COG3515 Predicted component of 23.4 2.6E+02 0.0057 29.7 7.4 77 6-82 37-115 (346)
110 PF09712 PHA_synth_III_E: Poly 23.4 2.3E+02 0.0049 29.6 6.8 91 39-133 189-281 (293)
111 COG1867 TRM1 N2,N2-dimethylgua 23.4 1.5E+02 0.0034 32.1 5.6 48 70-118 261-315 (380)
112 PLN03076 ARF guanine nucleotid 23.1 4.9E+02 0.011 34.0 10.7 58 52-110 1148-1208(1780)
113 KOG2035 Replication factor C, 22.2 4.2E+02 0.0091 28.2 8.2 67 12-82 241-313 (351)
114 KOG0593 Predicted protein kina 22.1 1.9E+02 0.0041 31.0 5.8 72 39-118 45-118 (396)
115 PF04826 Arm_2: Armadillo-like 22.1 3.4E+02 0.0074 27.6 7.7 72 45-118 138-209 (254)
116 PRK07360 FO synthase subunit 2 22.1 80 0.0017 33.7 3.2 132 1-139 3-175 (371)
117 PLN00017 photosystem I reactio 21.8 54 0.0012 28.2 1.5 15 435-449 34-49 (90)
118 smart00549 TAFH TAF homology. 21.6 1.4E+02 0.0031 26.1 4.0 33 83-115 6-38 (92)
119 TIGR01385 TFSII transcription 21.3 2.2E+02 0.0048 29.9 6.2 25 94-118 53-77 (299)
120 TIGR03363 VI_chp_8 type VI sec 21.3 2.4E+02 0.0051 30.0 6.6 67 19-85 51-118 (353)
121 PF10363 DUF2435: Protein of u 21.2 5.3E+02 0.011 22.2 7.5 85 41-131 3-87 (92)
122 PF04904 NCD1: NAB conserved r 21.2 3.6E+02 0.0077 23.0 6.1 51 63-114 23-75 (82)
123 cd01670 Death Death Domain: a 20.8 2E+02 0.0044 22.9 4.7 34 101-138 37-70 (79)
124 KOG3192 Mitochondrial J-type c 20.6 2.2E+02 0.0048 27.4 5.4 42 215-256 56-110 (168)
125 PF09324 DUF1981: Domain of un 20.5 2.4E+02 0.0052 23.8 5.2 34 83-116 16-49 (86)
126 KOG0132 RNA polymerase II C-te 20.1 1.3E+02 0.0027 35.6 4.4 117 22-143 23-146 (894)
127 cd08805 Death_ank1 Death domai 20.1 2.6E+02 0.0056 23.8 5.3 68 65-137 7-75 (84)
128 PF13925 Katanin_con80: con80 20.0 4.7E+02 0.01 24.7 7.7 72 4-79 29-107 (164)
No 1
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-66 Score=551.85 Aligned_cols=264 Identities=52% Similarity=0.807 Sum_probs=237.0
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccH
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIER 83 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask 83 (516)
++..+|+|||++.|.++||++||+|||+||.+.++++||+|+|+|||++++++||++||+|||+||||||+.||.+|+++
T Consensus 1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k 80 (470)
T KOG1087|consen 1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK 80 (470)
T ss_pred ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCC--
Q 010150 84 DILHEMVKIVKKK-PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIV-- 160 (516)
Q Consensus 84 ~FL~eLvklvk~k-~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s~Pi~tPp~t~~~~-- 160 (516)
+||++||++++++ .+..||+|||.||++|+++|++..++++.|+.+|++|+++||+||.+++++.++++|+......
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~ 160 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE 160 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence 9999999999998 8999999999999999999999777899999999999999999999999988888776421111
Q ss_pred ----CCCcccchHHHhh------hcccccccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHH
Q 010150 161 ----EPTSAFDDAAIQA------SLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKR 230 (516)
Q Consensus 161 ----~~p~~~~~a~iq~------~lq~e~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~r 230 (516)
.+|.++..+.+.. ....++..+++++|++++++++||+|||.+++|+++++.++|++++|+++||.+|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~r 240 (470)
T KOG1087|consen 161 PQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRR 240 (470)
T ss_pred chhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 1122222111110 011145567789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 010150 231 VMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKG 267 (516)
Q Consensus 231 I~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~g 267 (516)
||+||++++||++|++||++||+|++||.+||++.+|
T Consensus 241 v~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g 277 (470)
T KOG1087|consen 241 VMHLIEETSDEELLCELLKLNDELQRVLERYERIASG 277 (470)
T ss_pred HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999
No 2
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-44 Score=367.92 Aligned_cols=268 Identities=23% Similarity=0.364 Sum_probs=233.1
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIE 82 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVas 82 (516)
-+++.||.|||++.+.++||..|..|||.||.++.|+..|++.|.+||++....++++||++||+||+|||++||.+|++
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgk 86 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGK 86 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCC--CCCCCCCCCCCCCCC
Q 010150 83 RDILHEMVKIVKKKP-----DLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEF--PPRAENSVPFFTPPQ 155 (516)
Q Consensus 83 k~FL~eLvklvk~k~-----d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~F--P~~~~~s~Pi~tPp~ 155 (516)
++|||||+|++.+|+ ...||.||++||..|+..|.. ..+|.++|++||++||.- |....+..+++.|+.
T Consensus 87 frFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe----~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP 162 (594)
T KOG1086|consen 87 FRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPE----EPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPP 162 (594)
T ss_pred HHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcc----cchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCC
Confidence 999999999998764 468999999999999999985 578999999999999975 334445566766554
Q ss_pred C-CC----------------CCCCCcccchH--HHhhhcccc-----cccCCHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 010150 156 T-QP----------------IVEPTSAFDDA--AIQASLQSD-----ASGLSLAEIQRAKGLADVLMEMLGALDSKNPEA 211 (516)
Q Consensus 156 t-~~----------------~~~~p~~~~~a--~iq~~lq~e-----~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~ 211 (516)
- .. .++.|+++++| .|+..++++ +..++..-|++|++++++|.|||..+..++...
T Consensus 163 ~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~ 242 (594)
T KOG1086|consen 163 RPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHKLEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNAS 242 (594)
T ss_pred CCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 1 11 13458888887 566666643 334566789999999999999999887665544
Q ss_pred chHH-HHHHHHHHHHHHHHHHHHHhhccCC-HHHHHHHhhhhHHHHHHHHHHHhhhcCCCCCCCC
Q 010150 212 VKQE-IIVDLVDQCRSYQKRVMLLVNNTAD-EELLCQGLALNDNLQRVLRQHDDIAKGTPTAQST 274 (516)
Q Consensus 212 ~~dE-li~EL~~qCr~~q~rI~rLI~~v~D-EelL~~LL~lNDeL~~aL~kYd~l~~g~~~~~e~ 274 (516)
-++| +++++|++|.++|+.+++|++.++| ++.|+++|++||.|++++..|+.++.|....+.+
T Consensus 243 pd~E~~lq~v~~~ce~lr~tlfrlaset~dnD~aL~eILqanD~ltrvi~~ykt~~~G~~~~g~a 307 (594)
T KOG1086|consen 243 PDNELLLQEVYNRCEQLRPTLFRLASETEDNDPALAEILQANDNLTRVINLYKTPKEGNVANGSA 307 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcccccCcHHHHHHHhhhhhHHhhhhhcccccccccccccc
Confidence 5666 9999999999999999999999875 8899999999999999999999999999988854
No 3
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=100.00 E-value=2e-42 Score=318.11 Aligned_cols=141 Identities=37% Similarity=0.586 Sum_probs=136.8
Q ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 1 MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 1 m~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
+.++++++|+|||++.+.++||+.|++|||+||.+..+++||+|+|||||+|+|+++|++||+|||+||||||.+||.+|
T Consensus 1 ~~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 1 SVSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred CcchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCC
Q 010150 81 IERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPP 142 (516)
Q Consensus 81 ask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~ 142 (516)
++++|+++|+++++++++..||+||+++|+.|+.+|++++ +|+.|.++|++|+++||.||+
T Consensus 81 as~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~y~~L~~~G~~FP~ 141 (142)
T cd03569 81 ASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP-QLKYVVDTYQILKAEGHKFPE 141 (142)
T ss_pred hhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999888999999999999999999999875 699999999999999999996
No 4
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=100.00 E-value=3.6e-42 Score=317.13 Aligned_cols=138 Identities=29% Similarity=0.564 Sum_probs=133.4
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
|+++|+|||++.++++||++|++|||+||+++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~ 80 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRD 80 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCC
Q 010150 85 ILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPR 143 (516)
Q Consensus 85 FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~ 143 (516)
|+++|++++.++++..||+|||++|+.|+++|++++ .|..|.++|++|+++||.||..
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~y~~L~~~G~~f~~~ 138 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP-SLSLMSDLYKKLKNEGPDLVTP 138 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHcCCCCCCC
Confidence 999999999988999999999999999999999876 5999999999999999999853
No 5
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=100.00 E-value=4.2e-41 Score=309.07 Aligned_cols=137 Identities=39% Similarity=0.708 Sum_probs=130.3
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS-KNPKVQLLALFALETISKNCGDSVFQQIIE 82 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks-~np~vql~AL~LLe~lVkNCG~~Fh~eVas 82 (516)
+++++|+||||+.++++||++|++|||+||++..++++|+|+|+|||++ +|+++|++||+|||+||||||.+||.+|++
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias 80 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK 80 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999985 799999999999999999999999999999
Q ss_pred HHHHHH-HHHHhccC--CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCC
Q 010150 83 RDILHE-MVKIVKKK--PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFP 141 (516)
Q Consensus 83 k~FL~e-Lvklvk~k--~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP 141 (516)
++|+++ |++++.++ ++..||+||+++|+.|+++|++++ .|+.|.++|++|+++||.||
T Consensus 81 k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~y~~L~~~G~~FP 141 (141)
T cd03565 81 KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSP-DLTGVVEVYEELKKKGIEFP 141 (141)
T ss_pred HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHcCCCCC
Confidence 999999 99999754 457999999999999999999876 69999999999999999998
No 6
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=100.00 E-value=1.7e-40 Score=304.34 Aligned_cols=132 Identities=28% Similarity=0.472 Sum_probs=126.0
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccH
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIER 83 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask 83 (516)
+++++|+|||++.+.++||++|++|||+||.++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+++
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~ 80 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF 80 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcC
Q 010150 84 DILHEMVKIVKK-----KPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVE 139 (516)
Q Consensus 84 ~FL~eLvklvk~-----k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~ 139 (516)
+|+++|++++++ .++..||+|||+||+.|+++|+. .+.|.++|++||++||.
T Consensus 81 ~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~~~~~Y~~Lk~~G~i 137 (139)
T cd03567 81 RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH----EPKIKEAYDMLKKQGII 137 (139)
T ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHCCCc
Confidence 999999999975 36789999999999999999984 57799999999999975
No 7
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=100.00 E-value=1.7e-38 Score=288.84 Aligned_cols=132 Identities=39% Similarity=0.699 Sum_probs=126.5
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
++.+|+|||++.+.++||+.|++|||+||.+..++++|+|+|||||+|+|+++|++||+|||+||+|||.+||.+|++++
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~ 80 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKE 80 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 85 ILHEMVKIVKKKPDLN-VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 85 FL~eLvklvk~k~d~~-Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
|+++|+++++.+++.. ||+||+++|+.|+.+|++++ .|+.|.++|++|+++|
T Consensus 81 fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~L~~~g 133 (133)
T smart00288 81 FLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP-DLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHCc
Confidence 9999999998877655 99999999999999999865 6999999999999987
No 8
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=100.00 E-value=1.5e-37 Score=284.59 Aligned_cols=135 Identities=39% Similarity=0.691 Sum_probs=125.7
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++++.+|++||++.+.++||+.|++|||+||.++.++++|+++|+|||+|+|+++|++||+|||+||||||..||.+|+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHH---HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 82 ERDILHEMVKIVKKKPDLN---VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~---Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
+++|+++|+++++.+.... ||+||+++|+.|+.+|++++ .|..|.++|++||++|
T Consensus 83 ~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~-~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDP-ELSLIQDTYKRLKRKG 140 (140)
T ss_dssp SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTST-TGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCC-CchHHHHHHHHHHHCc
Confidence 9999999999998765544 99999999999999998765 6999999999999998
No 9
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=100.00 E-value=1e-36 Score=276.94 Aligned_cols=131 Identities=45% Similarity=0.738 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
++++|++||++.+.++||+.|++|||+||.++.++++|+|+|||||+|+|+++|++||+|||+||+|||.+||.+|++++
T Consensus 1 v~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~ 80 (133)
T cd03561 1 VTSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE 80 (133)
T ss_pred ChHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHh
Q 010150 85 ILHEMVKIVKK--KPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135 (516)
Q Consensus 85 FL~eLvklvk~--k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~ 135 (516)
||++|++++.+ +++..||+||+++|+.|+..|+++...|+.|.++|++||+
T Consensus 81 fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~~y~~lk~ 133 (133)
T cd03561 81 FLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIEDAYKLLKR 133 (133)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHhC
Confidence 99999999976 6889999999999999999999864579999999999984
No 10
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-36 Score=306.96 Aligned_cols=263 Identities=24% Similarity=0.356 Sum_probs=202.3
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
+|+|+.+|+|||++.++.+||.+||+|||+|+++++++|+++|+|+|||.|++|||+|+||+||++||+|||.+||++|+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVs 85 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVS 85 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCC--CCC---------
Q 010150 82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENS--VPF--------- 150 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s--~Pi--------- 150 (516)
+++|.++|.+|+..+.++.|++||..++..|.+.|+.++ .+..|.++|++||+.||.|+..+.-. ..+
T Consensus 86 Sr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp-~lsLi~~l~~klk~~g~~f~~~~~k~~k~a~~~~~v~~k~ 164 (462)
T KOG2199|consen 86 SRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP-SLSLISALYKKLKEEGITFLVAGSKPEKHAMSTNTVSSKQ 164 (462)
T ss_pred hhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHcCCCcccCCCchhHHHhhcccccccc
Confidence 999999999999988999999999999999999999987 69999999999999999998654210 000
Q ss_pred -----------------------CCCCCC-CCC----CCCCc----------------ccchHHH-hhhcc---------
Q 010150 151 -----------------------FTPPQT-QPI----VEPTS----------------AFDDAAI-QASLQ--------- 176 (516)
Q Consensus 151 -----------------------~tPp~t-~~~----~~~p~----------------~~~~a~i-q~~lq--------- 176 (516)
-++..+ -|+ ++.|+ +++.+.- .-++.
T Consensus 165 EeEdiaKAi~lSL~E~~~Q~k~a~~~tst~yPs~qk~nqapa~~l~s~~~~rkVRALYDFeAaE~nELsFkaGdIItVLd 244 (462)
T KOG2199|consen 165 EEEDIAKAIELSLKEQEKQKKLAETETSTLYPSHQKQNQAPASQLNSQTVVRKVRALYDFEAAEDNELSFKAGDIITVLD 244 (462)
T ss_pred cHHHHHHHHHhhHHHHhhchhhccCCccccCccccccccCchhhccCCccchhhhhhhcccccCCCccceecCcEEEEcc
Confidence 000000 000 00000 0111000 00000
Q ss_pred -------------------cccccC-----CHHHHH-----------HHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 010150 177 -------------------SDASGL-----SLAEIQ-----------RAKGLADVLMEMLGALDSKNPEAVKQEIIVDLV 221 (516)
Q Consensus 177 -------------------~e~~~~-----sl~eLe-----------~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~ 221 (516)
..+-+. ..++++ .....++-|-++|.+.+|.+... +++-+.+|+
T Consensus 245 ~s~~~WWKG~~~~~~GlFPsnfVT~~le~~~~ee~~~~~~~~E~~vfi~e~~iDrlL~~L~~~dPtd~~~-D~~~l~~le 323 (462)
T KOG2199|consen 245 DSDPNWWKGENHRGIGLFPSNFVTADLEEPKIEEQEQKQKNKEAIVFIDEDKIDRLLQVLHEADPTDEVQ-DDDDLLDLE 323 (462)
T ss_pred cCCcchhccccCCcccccchhhhhhhhcccchhhhhhhhcCcceeeeccHHHHHHHHHHHhhcCCCCccC-CCHHHHHHH
Confidence 000000 011111 12345667788899998876544 556677899
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcCC
Q 010150 222 DQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGT 268 (516)
Q Consensus 222 ~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~g~ 268 (516)
..|.+|++.|-++|+.+.-+. .+|+++|..|..||..|+.++...
T Consensus 324 ~~~~~mgPlid~~Le~idrk~--~eL~~Ln~~l~~Al~lY~kLm~~~ 368 (462)
T KOG2199|consen 324 AAVHQMGPLIDRKLEKIDRKH--EELSQLNVKLLDALRLYNKLMNEA 368 (462)
T ss_pred HHHHHhhhHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999986432 367899999999999999988554
No 11
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.93 E-value=2e-25 Score=197.14 Aligned_cols=109 Identities=39% Similarity=0.644 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
++.+|++||++.+.+|||..|++|||+++....++++++++|+|||+++|+++++.||+|||+||||||.+||.+|+++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~ 80 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND 80 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH
Confidence 47899999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-----cCCCHHHHHHHHHHHHHHH
Q 010150 85 ILHEMVKIVK-----KKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 85 FL~eLvklvk-----~k~d~~Vk~KIL~Ll~~W~ 113 (516)
|+.+|.+... ...+..||+|+++|++.|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 81 FAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 9999987532 2357899999999999997
No 12
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.4e-23 Score=225.36 Aligned_cols=149 Identities=30% Similarity=0.527 Sum_probs=140.6
Q ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 1 MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 1 m~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
|++.|..+|++||++.+-+.||..|++|||+|+.....+|+++|.|+|||+|.||++++.+|.|+|+||||||..||.+|
T Consensus 5 t~~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 5 TSSAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRIDHENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred cchHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHhccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 010150 81 IERDILHEMVKIVKK-KPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFF 151 (516)
Q Consensus 81 ask~FL~eLvklvk~-k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s~Pi~ 151 (516)
+++.||+.|..++.. +.+..|+.|+|.+|+.|+.+|.+. ..|..+.++|+.||..|+.||..++.++ +|
T Consensus 85 ~tre~m~~~~~~l~~~~~~e~v~~~~l~~~q~wa~af~~~-~~~~~v~~t~~~lk~~g~~Fpe~~e~d~-mf 154 (634)
T KOG1818|consen 85 ATREFMDLLKSLLESQRIHEEVKNKILELIQNWAAAFRNS-SKYSYVLDTYQKLKGGGHVFPELDENDA-MF 154 (634)
T ss_pred HHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhcCCccccccccchh-hh
Confidence 999999999999975 488999999999999999999987 5899999999999999999999987654 44
No 13
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=99.79 E-value=3.7e-19 Score=154.46 Aligned_cols=91 Identities=31% Similarity=0.495 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHH
Q 010150 181 GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQ 260 (516)
Q Consensus 181 ~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~k 260 (516)
.++..+|++|+++++||++||..++|++....++|+|+||+++||.+|++|++||+.+.|+++|++||++||+|++||.+
T Consensus 7 ~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee~l~~lL~~ND~L~~~l~~ 86 (100)
T PF03127_consen 7 SKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEELLGELLQANDELNQALER 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999988877779999999999999999999999999988999999999999999999
Q ss_pred HHhhhcCCCCC
Q 010150 261 HDDIAKGTPTA 271 (516)
Q Consensus 261 Yd~l~~g~~~~ 271 (516)
|+++.+|...+
T Consensus 87 Y~~l~~~~~~~ 97 (100)
T PF03127_consen 87 YDRLVKGQQRG 97 (100)
T ss_dssp HHHHHCCC---
T ss_pred HHHHHcCcccc
Confidence 99999998764
No 14
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=98.29 E-value=7.4e-06 Score=73.72 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=81.3
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHhccCchhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRL---GSKNPKVQLLALFALETISKNCGDSVFQQ 79 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRL---ks~np~vql~AL~LLe~lVkNCG~~Fh~e 79 (516)
++++.+|.+||+..--++.-...-+||..-... ....+.+..|.||| +.++.++.+-||.||+.|++||...|-..
T Consensus 2 s~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 2 SELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 578999999999988888878888888887665 78999999999999 78999999999999999999999988887
Q ss_pred hccHHHHHHHHHHhc-----cC-CC--HHHHHHHHHHHHHH
Q 010150 80 IIERDILHEMVKIVK-----KK-PD--LNVREKILILIDTW 112 (516)
Q Consensus 80 Vask~FL~eLvklvk-----~k-~d--~~Vk~KIL~Ll~~W 112 (516)
+ ++-...+..+.. ++ .+ ..||+++-+++...
T Consensus 81 ~--~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 81 L--RDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp H--HHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 7 233344444321 11 12 36998888877653
No 15
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.14 E-value=2.7e-05 Score=70.56 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHH
Q 010150 7 ACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDIL 86 (516)
Q Consensus 7 ~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL 86 (516)
.+|.+||++.-..+---..-|||++...+.....+++..|-|||+++++||-+-||.||+.|+.++...|.+.+... .
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~--~ 81 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN--S 81 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh--H
Confidence 58999999988877777788999999998888999999999999999999999999999999999988888887543 3
Q ss_pred HHHHHHhc-cC-CC--------HHHHHHHHHHHHH
Q 010150 87 HEMVKIVK-KK-PD--------LNVREKILILIDT 111 (516)
Q Consensus 87 ~eLvklvk-~k-~d--------~~Vk~KIL~Ll~~ 111 (516)
..++.+.. .. +| ..||..+-+++..
T Consensus 82 ~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 82 AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 33333332 11 22 4688887777654
No 16
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=98.00 E-value=2.6e-05 Score=68.82 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
+...+++.|.-. ..-..|-.+...+......+++.+.+|.++|+...+...+.+|-|+|.+++|||.+....+.. .
T Consensus 4 ~~~~l~~L~~~~---~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~-~ 79 (114)
T cd03562 4 YNALLEKLTFNK---NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE-F 79 (114)
T ss_pred HHHHHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH-H
Confidence 455566666554 244556666666666556789999999999999999999999999999999999987776654 2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 85 ILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 85 FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
|.+.+...+. +.+..+|+|+..|+..|.+.+
T Consensus 80 ~~~~f~~~~~-~~~~~~r~kl~rl~~iW~~~~ 110 (114)
T cd03562 80 LVPLFLDAYE-KVDEKTRKKLERLLNIWEERF 110 (114)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHccCCC
Confidence 3333433333 678999999999999999765
No 17
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=97.95 E-value=0.00013 Score=66.30 Aligned_cols=107 Identities=24% Similarity=0.242 Sum_probs=82.4
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS--KNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks--~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
+++.+|..||+...-+|.-..+-+||+.-.. .....++++.|.|||.. ++.+..+-||+|||.|++|+.++|-.++-
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r 79 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYN-YVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDAR 79 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4688999999999999998999999988654 45678999999999964 59999999999999999999888877774
Q ss_pred cHHHHHHHHHHh-----cc-CC--CHHHHHHHHHHHHHHH
Q 010150 82 ERDILHEMVKIV-----KK-KP--DLNVREKILILIDTWQ 113 (516)
Q Consensus 82 sk~FL~eLvklv-----k~-k~--d~~Vk~KIL~Ll~~W~ 113 (516)
+. +..|..+- .. .. -..||+|+-.++....
T Consensus 80 ~~--~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 80 EN--LYIIRTLKDFQYIDENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred Hh--HHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhC
Confidence 32 33333332 11 11 2579999888876543
No 18
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=97.87 E-value=0.00026 Score=63.86 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=82.7
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSK-NPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~-np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
++++..|.+||+....++.-..+-+|+......+....+++.+|.+||... +..+++-||.||+.|++|+...|-.++-
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 367899999999999999999999999998877678999999999999765 9999999999999999999876654443
Q ss_pred cH-HHHHHHHHHhcc--C---CCHHHHHHHHHHHHHH
Q 010150 82 ER-DILHEMVKIVKK--K---PDLNVREKILILIDTW 112 (516)
Q Consensus 82 sk-~FL~eLvklvk~--k---~d~~Vk~KIL~Ll~~W 112 (516)
.. ..+..|...-.. . ....||+++..|+..-
T Consensus 81 ~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l 117 (127)
T smart00273 81 RNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERL 117 (127)
T ss_pred HhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHH
Confidence 22 122223222111 1 1246777777766543
No 19
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00094 Score=69.77 Aligned_cols=111 Identities=25% Similarity=0.226 Sum_probs=84.7
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLG--SKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLk--s~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++..|-.||+...-+|.-.++.+|++.--. ...-.+.+-.|.|||+ .+|.+.++-||+|||+||+|+.++|-.++-
T Consensus 21 ~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~-~~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~r 99 (336)
T KOG2056|consen 21 EAELKVRDATSNDPWGPSGTLMAEIAQATYN-FVEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETR 99 (336)
T ss_pred HHHHHHHhccccccCCCchHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5778899999999999999999999987533 3567999999999996 589999999999999999999887777664
Q ss_pred cHHHHHHHHHHh----ccCC--CHHHHHHHHHHHHHHHHH
Q 010150 82 ERDILHEMVKIV----KKKP--DLNVREKILILIDTWQEA 115 (516)
Q Consensus 82 sk~FL~eLvklv----k~k~--d~~Vk~KIL~Ll~~W~~~ 115 (516)
..-++-++.+=+ .... -..||+|+-+++....+.
T Consensus 100 en~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~ 139 (336)
T KOG2056|consen 100 ENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDD 139 (336)
T ss_pred hhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccH
Confidence 433333322211 1112 257999999998876644
No 20
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=97.46 E-value=0.00065 Score=60.56 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIE 82 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVas 82 (516)
++..|.|||+.....|+-..+-+|............+++.+|.+|+..+|..+++-||.||..|++++...|..++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 356899999999999999999999998877678899999999999999999999999999999999998777666544
No 21
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.034 Score=61.35 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=75.4
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS-KNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks-~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
..++..|-|||++....++-..+-.|--.++..+.....++.+|-+||++ +|.-|++-||.|+.-|++.+...|+.++.
T Consensus 22 ~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~~G~~~f~~~l~ 101 (491)
T KOG0251|consen 22 SDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALKALILIHRLLKEGDPSFEQELL 101 (491)
T ss_pred hhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46789999999999999999999999999999988999999999999986 59999999999999999999889998887
Q ss_pred cHH
Q 010150 82 ERD 84 (516)
Q Consensus 82 sk~ 84 (516)
...
T Consensus 102 ~~~ 104 (491)
T KOG0251|consen 102 SRN 104 (491)
T ss_pred hcc
Confidence 655
No 22
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=96.52 E-value=0.011 Score=52.33 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhc---cCCCHH
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVK---KKPDLN 100 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk---~k~d~~ 100 (516)
.|-.+...+-.....+++.+..|.++++...+...+..|-|++.+++||+...-..+. ..|...+..++. ...+..
T Consensus 15 ~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~ 93 (121)
T smart00582 15 SIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFG-DELGPVFQDALRDVLGAANDE 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhCCHH
Confidence 3334333333333457899999999998777778888999999999999766433222 234444333332 233478
Q ss_pred HHHHHHHHHHHHHHH
Q 010150 101 VREKILILIDTWQEA 115 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~ 115 (516)
+|+||..+|..|.+.
T Consensus 94 ~~~ki~kll~iW~~~ 108 (121)
T smart00582 94 TKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999973
No 23
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.16 Score=55.50 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=109.9
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccH
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIER 83 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask 83 (516)
.+-.+|+++|...-.+-|--..-+|--+++.+.+...-+.+.|..-+.+....+-+++|-|++.|.-.. ..|...|.+.
T Consensus 7 kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs-~~FR~lii~n 85 (661)
T KOG2374|consen 7 KLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRS-KLFRTLIIEN 85 (661)
T ss_pred HHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh-HHHHHHHHhC
Confidence 577899999999999888888888988898887789999999999999988999999999999988876 6787777642
Q ss_pred --HHHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHh-cCcCCCCCC
Q 010150 84 --DILHEMVKIVKKKP-------DLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS-AGVEFPPRA 144 (516)
Q Consensus 84 --~FL~eLvklvk~k~-------d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~-~Gv~FP~~~ 144 (516)
+||.-+...=...+ ...+|.+.+..|..|.+.|+- .|..+.-.|.-||. +.+.||...
T Consensus 86 ~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~---~yk~l~lg~~~Lk~tkkvdf~d~~ 153 (661)
T KOG2374|consen 86 LDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGF---HYKELRLGFDYLKNTKKVDFPDLQ 153 (661)
T ss_pred HHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhccccccCcchh
Confidence 45544443222211 136899999999999999986 48889999999975 558898653
No 24
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=93.06 E-value=0.32 Score=49.21 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=61.0
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSK-NPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~-np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++..|-|||+....-|+--.+-.|.-.... +.....++.+|.+|+... |+.|++-+|.|+..|+.-+...|-.++.
T Consensus 3 ~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 3 DLEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp HHHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 5788999999998888888888888777766 678899999999999865 9999999999999999998766665554
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.41 E-value=2.1 Score=34.82 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHH
Q 010150 6 AACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDI 85 (516)
Q Consensus 6 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~F 85 (516)
+.+++...+ ++||..-...|..+..- +..+++..|.+.+++.++.++..|+.-|..+ ++.+.
T Consensus 2 ~~L~~~l~~----~~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------~~~~~ 63 (88)
T PF13646_consen 2 PALLQLLQN----DPDPQVRAEAARALGEL--GDPEAIPALIELLKDEDPMVRRAAARALGRI------------GDPEA 63 (88)
T ss_dssp HHHHHHHHT----SSSHHHHHHHHHHHHCC--THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC------------HHHHT
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHHH
Confidence 455665533 36888888899998854 5679999999999999999999999888754 35778
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHH
Q 010150 86 LHEMVKIVKKKPDLNVREKILILI 109 (516)
Q Consensus 86 L~eLvklvk~k~d~~Vk~KIL~Ll 109 (516)
+..|.+++.+..+..||..++..|
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhc
Confidence 888999888766778888777654
No 26
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=91.58 E-value=1.1 Score=46.90 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcC-CccHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMD-PGQAKDALKILKKRL-G--SKNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~-~~~akeA~raIrKRL-k--s~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
++--|..||++.-=+|-=.++-+||+.-... -+.--+.+..|-.|+ + ..+.+.++-+|.||+.|+||+.++|-.+-
T Consensus 24 ~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~VqeA 103 (499)
T KOG2057|consen 24 AEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERFVQEA 103 (499)
T ss_pred HHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3445666666654444445667777765542 123345566666665 2 35788899999999999999999998774
Q ss_pred ccHHHHHHHHHHhccC--------CCHHHHHHHHHHHHH
Q 010150 81 IERDILHEMVKIVKKK--------PDLNVREKILILIDT 111 (516)
Q Consensus 81 ask~FL~eLvklvk~k--------~d~~Vk~KIL~Ll~~ 111 (516)
++-.=+|++|-.=+ --..||+|+.++|.-
T Consensus 104 --REh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEf 140 (499)
T KOG2057|consen 104 --REHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEF 140 (499)
T ss_pred --HHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHH
Confidence 34444555543211 124799999888753
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.28 E-value=2.5 Score=40.97 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC---chhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCG---DSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG---~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
.+-....|..-++++|+.+-..++..|..++.++| ..+.....-+.++..|++++.. .++.||+-...++..+...
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH
Confidence 34447888888899999999999999999999998 3333322123444555555554 6789999999999999888
Q ss_pred hCC
Q 010150 116 FGG 118 (516)
Q Consensus 116 F~~ 118 (516)
|+.
T Consensus 208 ~~~ 210 (228)
T PF12348_consen 208 FPE 210 (228)
T ss_dssp H-H
T ss_pred CCH
Confidence 864
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=2 Score=45.50 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCc--cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHH
Q 010150 23 AINIELCDVINMDPG--QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLN 100 (516)
Q Consensus 23 ~~ileICD~In~~~~--~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~ 100 (516)
.-+.++|+-|..--. .-.-...++. .|++.+..+-.+|..+|-+|+.|- .+.+.+|....|+..|.++++...+..
T Consensus 105 d~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNN-P~~Qe~v~E~~~L~~Ll~~ls~~~~~~ 182 (342)
T KOG2160|consen 105 DNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNN-PKSQEQVIELGALSKLLKILSSDDPNT 182 (342)
T ss_pred HHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHcccHHHHHHHHccCCCch
Confidence 445566766643111 0111233344 899999999999999999999996 789999999999999999999777889
Q ss_pred HHHHHHHHHHHHHHHhC
Q 010150 101 VREKILILIDTWQEAFG 117 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~F~ 117 (516)
||.|+|..|-..=..|.
T Consensus 183 ~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999888766654
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.89 E-value=8.7 Score=36.47 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHH
Q 010150 23 AINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVR 102 (516)
Q Consensus 23 ~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk 102 (516)
..++-+||++-.-+.-...-+..|.++|.+.++.|-..||.+|-.|+.+.-.++..+ ++.++.+++.. .++.||
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~-----l~~~~l~~l~D-~~~~Ir 80 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ-----LFSRILKLLVD-ENPEIR 80 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh-----hhHHHHHHHcC-CCHHHH
Confidence 357789999988877778889999999999999999999999999999975555443 44566666644 578999
Q ss_pred HHHHHHHHHHHHHh
Q 010150 103 EKILILIDTWQEAF 116 (516)
Q Consensus 103 ~KIL~Ll~~W~~~F 116 (516)
.-+...+..+....
T Consensus 81 ~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 81 SLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998774
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.20 E-value=12 Score=31.34 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
+++..|.+-|.+.+++++..|+..|-.+..++.. ....+....++..|++++... +..|++.++.+|..
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~ 117 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSN 117 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 6677888888999999999999999999998753 333344456888899988764 77899988887764
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.59 E-value=10 Score=36.77 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCcCHHHHH----HHHHHHhcC--CccHHHH---HH----HHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 18 IGPDWAINI----ELCDVINMD--PGQAKDA---LK----ILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 18 ~~~Dw~~il----eICD~In~~--~~~akeA---~r----aIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
.+.||..-. .|-.+++.. .....+. ++ .|.+.+.+.+..+...|+.+|..|..++|..|...+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~--~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA--DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH--HH
Confidence 567998644 444555544 2233333 33 556788888999999999999999999999987764 46
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 85 ILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 85 FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
++..|.+++..+ ...|++.+...|..+....
T Consensus 95 ~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 95 LLPPLLKKLGDS-KKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccc-cHHHHHHHHHHHHHHHHHC
Confidence 888888877653 3579999999988887654
No 32
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=80.18 E-value=5 Score=31.72 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccCch----hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 60 LALFALETISKNCGDS----VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 60 ~AL~LLe~lVkNCG~~----Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
.-|-|++.+++||..+ |-..+. .+|..+..-+....+..+++|+..+|..|.+.
T Consensus 3 ~~lYl~ndI~q~sk~k~~~~f~~~F~--~~l~~~~~~~~~~~~~~~~~kv~rll~iW~~r 60 (64)
T PF04818_consen 3 ALLYLANDILQNSKRKNPDEFAPAFS--PVLPDAFAHAYKNVDPEVRKKVQRLLNIWEER 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTHCHHHHHH--CCHHHHHHHHCCCS-HHHHHHHHHHHHHHHHC
T ss_pred ceeehHHHHHHHhhhcChHHHHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhCC
Confidence 4577888889988532 332222 23333333333344899999999999999863
No 33
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=78.86 E-value=35 Score=30.07 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=66.6
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCH-----------HHHHHHHHHHHHHHhc
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNP-----------KVQLLALFALETISKN 71 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np-----------~vql~AL~LLe~lVkN 71 (516)
-.++++|+..|+.... .|-..+-.+.=.. .....+.+.+..|..|.....+ .++.+.+.+|..-|.|
T Consensus 8 gtl~~Li~~L~~~~~~-~d~~f~~~Fllty-r~F~tp~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~ 85 (127)
T smart00229 8 GTLEKLIEHLTEAFDK-ADPFFVETFLLTY-RSFITTQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVEN 85 (127)
T ss_pred ecHHHHHHHHcCCCcC-CCHHHHHHHHHHh-hhhCCHHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3578999999998653 3432222222111 2334678888888888875333 3778889999999999
Q ss_pred cCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010150 72 CGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILID 110 (516)
Q Consensus 72 CG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~ 110 (516)
+...|...-.-..+|.++...+.........+++..++.
T Consensus 86 ~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 86 YWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred CCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 988787765445566666665543323344555555543
No 34
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=78.70 E-value=12 Score=32.87 Aligned_cols=54 Identities=4% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010150 187 IQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTAD 240 (516)
Q Consensus 187 Le~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~D 240 (516)
+...+..++++.+=+......+.+...|..|+.||...-.|.++|++||+..+|
T Consensus 4 ~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee 57 (96)
T PF12210_consen 4 CNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEE 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888777665555677888999999999999999999999998765
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=76.82 E-value=13 Score=30.09 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 43 LKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 43 ~raIrKRL-ks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
+..|.+.| +++++.+...|+.+|. ++.+.+.+..|+.+++. .+..||..++..|..-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~------------~~~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG------------ELGDPEAIPALIELLKD-EDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH------------CCTHHHHHHHHHHHHTS-SSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH------------HcCCHhHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 35677888 8999999999998887 33456889999999854 6789999888877654
No 36
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=71.26 E-value=61 Score=28.05 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHHh
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSK--------------NPKVQLLALFALETISK 70 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~--------------np~vql~AL~LLe~lVk 70 (516)
++++|+++|+... ..|-..+-.+.-.- ..-..+.+.+..|..|.... ...++.+.+.+|..-|.
T Consensus 2 l~~Li~~L~~~~~-~~d~~f~~~FllTy-rsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~ 79 (122)
T cd06224 2 LEALIEHLTSTFD-MPDPSFVSTFLLTY-RSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVE 79 (122)
T ss_pred HHHHHHHHcCCCc-cccHHHHHHHHHHh-hhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999977 22333222222222 23345788888888888643 24478889999999999
Q ss_pred ccCchhhhhhccHHHHHHHHHHhc
Q 010150 71 NCGDSVFQQIIERDILHEMVKIVK 94 (516)
Q Consensus 71 NCG~~Fh~eVask~FL~eLvklvk 94 (516)
||...|+ .+..++..|...+.
T Consensus 80 ~~~~df~---~d~~l~~~l~~F~~ 100 (122)
T cd06224 80 NYPYDFF---DDEELLELLEEFLN 100 (122)
T ss_pred hCCCccc---ccHHHHHHHHHHHH
Confidence 9998886 35556666665554
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=71.18 E-value=15 Score=30.80 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
++..|.+.|++.++.+...|+..|..+.++. +.....+.+.+++..|.+++.. .+..|+..++..|..+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAA 78 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHcc
Confidence 5777888888889999999999999998875 3334444556889999998876 478999999998888764
No 38
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.02 E-value=34 Score=32.25 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRL----GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 39 akeA~raIrKRL----ks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.+.++..++.|| +++++..-+.++.|+...+.+||..+-.+-+ ..|+..|.+++.+..+..+++-++..+..--.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 355566666665 5788999999999999999999765554434 57999999999886667777766666555443
Q ss_pred H
Q 010150 115 A 115 (516)
Q Consensus 115 ~ 115 (516)
.
T Consensus 98 ~ 98 (165)
T PF08167_consen 98 L 98 (165)
T ss_pred H
Confidence 3
No 39
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=64.45 E-value=11 Score=42.66 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=60.0
Q ss_pred CccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 36 PGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 36 ~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.--++..+-+|-++|...-+..-|.++-|||..+||-|.....-++ +.+.......+ .+.|.+.|.++..++..|..
T Consensus 35 ~~~a~~iv~~iE~hi~kcpp~~kL~~~y~~dsi~knvg~py~~~fs-~~l~a~f~~~~-~~vd~r~r~~l~~~~~tw~~ 111 (579)
T KOG2071|consen 35 LPFAKSIVSAIEAHIAKCPPSQKLPVMYLLDSIVKNVGSPYTTAFS-RNLVATFICAF-TKVDERTRTSLFKLRATWDL 111 (579)
T ss_pred ccccHHHHHHHHHHHhhCCcccccchhhhhHHHHhhcCCcchhhhh-hhHHHHHHHHH-hhccccccchhHhhHHhhcc
Confidence 3457999999999999999999999999999999999988444333 33333333222 24688999999999999993
No 40
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=63.93 E-value=1.2e+02 Score=31.64 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCc------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC--chh
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPG------QAKDALKILKKRLGSKNPKVQLLALFALETISKNCG--DSV 76 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~------~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG--~~F 76 (516)
+.+.|+..+.-. ..---+..-.|++++....- .....+.++.|-|+.+...++.+|+.++-.++-..| ..-
T Consensus 45 L~~~Id~l~eK~-~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKS-SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 456666666544 22233444556776655421 133457778888888888999999999999988865 443
Q ss_pred hhhhccHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Q 010150 77 FQQIIERDILHEMVKIVKKKP-DLNVREKILILIDT 111 (516)
Q Consensus 77 h~eVask~FL~eLvklvk~k~-d~~Vk~KIL~Ll~~ 111 (516)
+..+ +.+...|.+++.... ...+|..++..|-.
T Consensus 124 ~ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai 157 (309)
T PF05004_consen 124 EEIF--EELKPVLKRILTDSSASPKARAACLEALAI 157 (309)
T ss_pred HHHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHH
Confidence 4333 356677788887543 45677777655443
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=63.14 E-value=19 Score=39.18 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKD-ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIER 83 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~ake-A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask 83 (516)
+...|.+.-++..+---...++.++.+.+..++.... .+..|.+-|...++.|+..|+.+|..| .|.+.....+. .
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~-~ 191 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLI-P 191 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHH-H
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhH-H
Confidence 3444555555444333456788899999998887766 599999999999999999999999999 22222211111 2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 84 DILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 84 ~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
.+...|.+++ ...++-++-+++.++..+
T Consensus 192 ~~~~~L~~~l-~~~~~~~q~~il~~l~~~ 219 (526)
T PF01602_consen 192 KLIRILCQLL-SDPDPWLQIKILRLLRRY 219 (526)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHHHHHHTTS
T ss_pred HHHHHhhhcc-cccchHHHHHHHHHHHhc
Confidence 2333344433 234556666666666643
No 42
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.12 E-value=31 Score=33.01 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=53.4
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 43 LKILKKRLGS--KNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 43 ~raIrKRLks--~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
++-|...+.. .+++++.+||.+||.+|.|. ...+..|..+==+..|+..+.. .+..++...+.||-+.-
T Consensus 60 I~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S-~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 60 IKKIASYVNSSAMDASILQRSLAILESIVLNS-PKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHHccccccchHHHHHHHHHHHHHhCC-HHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 3344444432 37999999999999999986 6677778876667778888877 78899999999988754
No 43
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=60.77 E-value=40 Score=26.67 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHh-cCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhh
Q 010150 21 DWAINIELCDVIN-MDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQ 79 (516)
Q Consensus 21 Dw~~ileICD~In-~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~e 79 (516)
||..+.+.|..+= +..-.-+-++-.+.-.++.....--..+|.+|..|+.+..+.+|-.
T Consensus 1 DW~~v~~~~~~lL~~~sKDlrv~~~l~~a~~~~~g~~gl~~gl~ll~~ll~~~W~~l~P~ 60 (62)
T PF06812_consen 1 DWDKVEELALELLSEQSKDLRVAVWLTEALLRLEGLAGLAEGLELLADLLENYWDSLHPQ 60 (62)
T ss_pred CHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHCCcccCCC
Confidence 8999999997765 5555678888888888887778888889999999999998887753
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=60.20 E-value=48 Score=35.99 Aligned_cols=39 Identities=33% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010150 30 DVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETI 68 (516)
Q Consensus 30 D~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~l 68 (516)
.+...+++...-++..|+|-|++.|+.++.+||..|-.+
T Consensus 68 ~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 68 LYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp HHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 334444445666777777777777777777777665443
No 45
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=41 Score=39.21 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc-CCCHH
Q 010150 22 WAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK-KPDLN 100 (516)
Q Consensus 22 w~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~-k~d~~ 100 (516)
.-+.|-|.=++|...+--|.++..||+-|.++|+..+.+||. ||-|.|.+ +++ ..|-+++-||+.. ..-.-
T Consensus 92 qIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~----~I~niG~r---e~~-ea~~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 92 QIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALH----CIANIGSR---EMA-EAFADDIPKLLVSGSSMDY 163 (938)
T ss_pred HHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHH----HHHhhccH---hHH-HHhhhhhHHHHhCCcchHH
Confidence 344567777888888888999999999999999999999995 78898864 333 3577788887754 34456
Q ss_pred HHHHHH
Q 010150 101 VREKIL 106 (516)
Q Consensus 101 Vk~KIL 106 (516)
||+|..
T Consensus 164 vkqkaA 169 (938)
T KOG1077|consen 164 VKQKAA 169 (938)
T ss_pred HHHHHH
Confidence 777653
No 46
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=58.21 E-value=67 Score=38.20 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHh-c--cCCC
Q 010150 22 WAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIV-K--KKPD 98 (516)
Q Consensus 22 w~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklv-k--~k~d 98 (516)
.+.+..+||.|-. ....-...++|.--++++||..-..++.+|+-|+++-|. ....++-++.++..+ + +..+
T Consensus 353 ~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~----~~~~~~t~~~l~p~~~~~~~D~~ 427 (815)
T KOG1820|consen 353 RDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP----KTVEKETVKTLVPHLIKHINDTD 427 (815)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC----cCcchhhHHHHhHHHhhhccCCc
Confidence 3456778888765 345678899999999999999999999999999999885 222334444444433 2 2367
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 010150 99 LNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
..||.-.++.+..-...|+.
T Consensus 428 ~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 428 KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 89999999999999988874
No 47
>PRK09687 putative lyase; Provisional
Probab=56.24 E-value=99 Score=31.78 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---------HH---HhccCchhh-----hhhccHHHHHHHHHHhccCCCHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALE---------TI---SKNCGDSVF-----QQIIERDILHEMVKIVKKKPDLNV 101 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe---------~l---VkNCG~~Fh-----~eVask~FL~eLvklvk~k~d~~V 101 (516)
..+++.+|.+.|+..+..|...|+.-|- .| +++...++. -++++++.+..|..++....|..|
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhH
Confidence 3456666666777777766665554442 22 222111111 234456666666666665556677
Q ss_pred HHHHHHHHH
Q 010150 102 REKILILID 110 (516)
Q Consensus 102 k~KIL~Ll~ 110 (516)
+.++.+.+.
T Consensus 270 ~~~a~~a~~ 278 (280)
T PRK09687 270 ITKAIDKLK 278 (280)
T ss_pred HHHHHHHHh
Confidence 777666553
No 48
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=56.20 E-value=33 Score=29.18 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=48.4
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHH
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS----KN-----------PKVQLLALFALET 67 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks----~n-----------p~vql~AL~LLe~ 67 (516)
=.+++||+++|+..... |-. .++..=+-=..-..+.+.+..|..|... +. ..++++.+.+|-.
T Consensus 5 gtl~~Li~~L~~~~~~~-d~~-f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~ 82 (104)
T PF00618_consen 5 GTLEKLIERLTSSFNSD-DEE-FVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKY 82 (104)
T ss_dssp E-HHHHHHHHCHC-SS--HHH-HHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHhcccccC-CHH-HHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 36889999999983333 222 3332222223445789999999999942 11 1377789999999
Q ss_pred HHhccCchhhhhh
Q 010150 68 ISKNCGDSVFQQI 80 (516)
Q Consensus 68 lVkNCG~~Fh~eV 80 (516)
-|++|...|+...
T Consensus 83 Wi~~~~~df~~~~ 95 (104)
T PF00618_consen 83 WIENYPDDFRDDP 95 (104)
T ss_dssp HHHHHCCCCHH-H
T ss_pred HHHHChHhhCCCH
Confidence 9999988777653
No 49
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=55.85 E-value=9.3 Score=39.01 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCc--hhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH-HHHH
Q 010150 38 QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGD--SVFQQIIERDILHEMVKIVKKKPDLNVREKILILID-TWQE 114 (516)
Q Consensus 38 ~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~--~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~-~W~~ 114 (516)
.+++++++|-.-+..-....-+.++.||+.|...|.. .|..+. ..+|++-|. .++..++..|++-|...+. .+.+
T Consensus 38 S~R~~~~~ls~a~~~~~~~~~i~p~~vl~~L~~~l~~~~~i~~e~-~~~y~~~l~-~v~~~Y~~~v~~EV~~A~~~~~ee 115 (254)
T PF06798_consen 38 SPRFVIKILSNALSSDSEEDCINPLDVLNELEEGLKDHPSISEEE-RERYLEFLK-SVRKEYDERVEKEVQEAFYYSYEE 115 (254)
T ss_pred CHhHHHHHHHHHHHhCcccceecHHHHHHHHHHHhhcccccCHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccHH
Confidence 3799999999999876777888999999999999976 455554 457888555 7777677777777766665 5555
Q ss_pred HhC
Q 010150 115 AFG 117 (516)
Q Consensus 115 ~F~ 117 (516)
...
T Consensus 116 ~~~ 118 (254)
T PF06798_consen 116 QIQ 118 (254)
T ss_pred HHH
Confidence 443
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=54.81 E-value=45 Score=38.39 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=67.0
Q ss_pred HHHHHHhcCCc-c----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHH
Q 010150 27 ELCDVINMDPG-Q----AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNV 101 (516)
Q Consensus 27 eICD~In~~~~-~----akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~V 101 (516)
.||.+|-.-.. . ..-.+..|-+.+....+++--.++-+|.-+|-||.+.|..+.-++=|.+-+..++.+ ++..|
T Consensus 442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd-~d~~V 520 (678)
T KOG1293|consen 442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND-PDWAV 520 (678)
T ss_pred HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC-CCHHH
Confidence 47777644221 1 223467777788889999999999999999999999999988776555556666555 78999
Q ss_pred HHHHHHHHHHHHHH
Q 010150 102 REKILILIDTWQEA 115 (516)
Q Consensus 102 k~KIL~Ll~~W~~~ 115 (516)
++.++.|+....-.
T Consensus 521 qeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999987643
No 51
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=53.82 E-value=79 Score=33.13 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHh-ccCchhhhhhccHHHHH-HHHHHhc
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISK-NCGDSVFQQIIERDILH-EMVKIVK 94 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVk-NCG~~Fh~eVask~FL~-eLvklvk 94 (516)
++.|-+-|+...+..+.-||.||-.+|. +.|.....-+..++|-. .|.+++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~ 111 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLT 111 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhc
Confidence 6777777788889999999999999999 98876666666677764 4777763
No 52
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=53.00 E-value=21 Score=35.40 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHHHhCCCC-----------C
Q 010150 55 PKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP-DLN-VREKILILIDTWQEAFGGPR-----------G 121 (516)
Q Consensus 55 p~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~-d~~-Vk~KIL~Ll~~W~~~F~~~~-----------~ 121 (516)
....-++..-++.-.+++-.....+|...-|-..+.++|.... |+. +++-|+.++..|........ .
T Consensus 63 e~ek~r~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~ 142 (207)
T PRK01005 63 DQKLKQGESALVQAGKRSLESLKQAVENKIFRESLGEWLEHVLTDPEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSAR 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccccchhhhhcCCHH
Confidence 3344478888888888888888888888888888999997654 666 66778889999987511100 0
Q ss_pred Cch-HHH-HHHHHHHhcCcCCCC
Q 010150 122 RYP-QYY-AAYNELRSAGVEFPP 142 (516)
Q Consensus 122 ~~~-~~~-~~Y~~LK~~Gv~FP~ 142 (516)
.+. .|. .+-+.|+++||.|-.
T Consensus 143 ~~~~~~~~~~~~~l~~~gv~~~~ 165 (207)
T PRK01005 143 AVNELLGKEVTKKLKEKGVSVGS 165 (207)
T ss_pred HHHHHHHHHHHHHHHHcCeEEec
Confidence 011 122 235678899998865
No 53
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.13 E-value=4e+02 Score=30.22 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhccCchhhhhh---c------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 010150 60 LALFALETISKNCGDSVFQQI---I------ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAY 130 (516)
Q Consensus 60 ~AL~LLe~lVkNCG~~Fh~eV---a------sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y 130 (516)
.|+.-|+..+++....|..-. . .++.+..+..-+.. =....++|=.++..-...|.. .+..+.+.|
T Consensus 161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~--l~~~~e~IP~l~~~l~~~~P~---ql~eL~~gy 235 (560)
T PF06160_consen 161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDE--LEEIMEDIPKLYKELQKEFPD---QLEELKEGY 235 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHhHH---HHHHHHHHH
Confidence 566777777777666554322 1 12333333322211 024556777788888888865 578899999
Q ss_pred HHHHhcCcCCCCCC
Q 010150 131 NELRSAGVEFPPRA 144 (516)
Q Consensus 131 ~~LK~~Gv~FP~~~ 144 (516)
+.|+.+||.|+..+
T Consensus 236 ~~m~~~gy~l~~~~ 249 (560)
T PF06160_consen 236 REMEEEGYYLEHLD 249 (560)
T ss_pred HHHHHCCCCCCCCC
Confidence 99999999998743
No 54
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.95 E-value=45 Score=38.90 Aligned_cols=73 Identities=14% Similarity=0.264 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 38 QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 38 ~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.-.-|+..|-+-|.++..+.-++||.=+-.| |...|-....++. .+.++..++...|..||+|+++|+...-+
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L---~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKL---ASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHH---HhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 3477889999999999999999997554444 4334555444444 77777788877889999999999876543
No 55
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=50.33 E-value=82 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHh
Q 010150 94 KKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 94 k~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
+++.++.|+..+..||..|...+
T Consensus 51 rkh~~~~I~~~A~~Li~~WK~~v 73 (75)
T smart00509 51 RKHKNEEIRKLAKKLIKSWKKLV 73 (75)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999765
No 56
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=49.10 E-value=82 Score=33.07 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.4
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 92 IVKKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 92 lvk~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
++++.++.+|+.++..||..|...+-.
T Consensus 54 ~~Kk~~n~ev~~~ak~Lik~Wkk~~~~ 80 (296)
T KOG1105|consen 54 VLKKHKNEEVRSLAKKLIKSWKKLVDK 80 (296)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456778999999999999999988864
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=48.60 E-value=1.2e+02 Score=33.69 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHhc--CCcc----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhc
Q 010150 21 DWAINIELCDVINM--DPGQ----AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVK 94 (516)
Q Consensus 21 Dw~~ileICD~In~--~~~~----akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk 94 (516)
+-..+..+|++|+. +... .......|.+-|.|.++.|+.+|+..|..|+.+-+ .....+.+.+++..+..++.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE-GAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH-HHHHHhcCccHHHHHHHHHc
Confidence 45556667777664 2212 35566677888899999999999999999987764 45666777888888888886
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 010150 95 KKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 95 ~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
. .+..|.+.+..+|..-..
T Consensus 130 ~-~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 130 D-PDLSVAKAAIKALKKLAS 148 (503)
T ss_pred C-CcHHHHHHHHHHHHHHhC
Confidence 5 678899988888887764
No 58
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.97 E-value=2.4e+02 Score=32.02 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=69.9
Q ss_pred CcCHHHHHH-HHHHHhcCCccH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc---------c
Q 010150 19 GPDWAINIE-LCDVINMDPGQA------KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII---------E 82 (516)
Q Consensus 19 ~~Dw~~ile-ICD~In~~~~~a------keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa---------s 82 (516)
+.|+..|++ |.++|.+...+. ++--.-+|+.+- -|.+.=--|+..||.=+.|....|.+-+. .
T Consensus 117 E~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl-~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA 195 (570)
T COG4477 117 EEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVL-ANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEA 195 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHH
Confidence 345555554 666665543332 333333344332 12333334667777777776655554332 1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCC
Q 010150 83 RDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRA 144 (516)
Q Consensus 83 k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~ 144 (516)
...|.+..+.+.. =....++|=.||......+.+ .+..+...|++|+.+||.|+...
T Consensus 196 ~evl~~~ee~~~~--L~~~~e~IP~L~~e~~~~lP~---ql~~Lk~Gyr~m~~~gY~l~~~~ 252 (570)
T COG4477 196 REVLEEAEEHMIA--LRSIMERIPSLLAELQTELPG---QLQDLKAGYRDMKEEGYHLEHVN 252 (570)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHccCCccccc
Confidence 2222222221110 024678888999999999875 68999999999999999998754
No 59
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=46.84 E-value=77 Score=28.89 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccCchhhhhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIE-RDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 39 akeA~raIrKRL-ks~np~vql~AL~LLe~lVkNCG~~Fh~eVas-k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
--+.+|.|.+-| ++.++.+.--|+.=|-.+|+.... .+.|.. -..-..+-.++. ..+.+||..+|..+|.|-
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 345666676666 345666666677777778887622 222221 122222333433 478999999999998864
No 60
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=46.75 E-value=1e+02 Score=28.54 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccCchhhhhhccHH----HHHHHHHHhcc
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNP----KVQLLALFALETISKNCGDSVFQQIIERD----ILHEMVKIVKK 95 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np----~vql~AL~LLe~lVkNCG~~Fh~eVask~----FL~eLvklvk~ 95 (516)
.+.=||++.+..-...+.....|+.=|..... ......+.++=.++++||..+...=..+. |+..+...+..
T Consensus 106 ~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 106 NIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHh
Confidence 34458888888766666666666665554443 44455666667777888988881122233 44444444433
Q ss_pred ----CCCHHHHHHHHHHHH
Q 010150 96 ----KPDLNVREKILILID 110 (516)
Q Consensus 96 ----k~d~~Vk~KIL~Ll~ 110 (516)
..+.+||-.+..++.
T Consensus 186 ~~~~~~~~r~~~~l~~l~~ 204 (209)
T PF02854_consen 186 KKDPNLSSRIRFMLEDLIE 204 (209)
T ss_dssp CHSSSSSHHHHHHHHHHHH
T ss_pred hcccCCCHHHHHHHHHHHH
Confidence 356777777777765
No 61
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=44.87 E-value=1e+02 Score=28.64 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHhccCchhhhh--------hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 54 NPKVQLLALFALETISKNCGDSVFQQ--------IIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 54 np~vql~AL~LLe~lVkNCG~~Fh~e--------Vask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
.......+|.||+.+++|+|..|... +.+.++..-|.+.+... +..|-.+.+.++..--..|+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~ 105 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFR 105 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999988731 11233334444444332 36666677777666555664
No 62
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=44.77 E-value=79 Score=29.37 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHh
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNP---KVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIV 93 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np---~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklv 93 (516)
.+.=||++.+..-.........|+.-+...+. ......+.++=.++..||..+... ..++.++++...+
T Consensus 99 ~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~-~~~~~~~~~l~~l 170 (200)
T smart00543 99 LVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLERE-KSPKLLDEILERL 170 (200)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCc-ccHHHHHHHHHHH
Confidence 34448898888877777777777777654322 234567777777788889887742 2344555544433
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.19 E-value=1.4e+02 Score=35.32 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---cCchhhhhhccHHHHHHHHHHhccC-----
Q 010150 25 NIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKN---CGDSVFQQIIERDILHEMVKIVKKK----- 96 (516)
Q Consensus 25 ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkN---CG~~Fh~eVask~FL~eLvklvk~k----- 96 (516)
++-..-+|+..++....-+-+-+++|..+++-|-+-+|.++-.+.+. .=..|... ...|+..|+.++..+
T Consensus 163 ~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l--~~~lV~iLk~l~~~~yspey 240 (866)
T KOG1062|consen 163 ALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDL--VPSLVKILKQLTNSGYSPEY 240 (866)
T ss_pred HHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHhcCCCCCcc
Confidence 33444455555555555555667788888888888888887666666 22355552 356777777777543
Q ss_pred -----CCHHHHHHHHHHHHHHH
Q 010150 97 -----PDLNVREKILILIDTWQ 113 (516)
Q Consensus 97 -----~d~~Vk~KIL~Ll~~W~ 113 (516)
+|+-++=+||.++.-.+
T Consensus 241 dv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 241 DVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred CccCCCchHHHHHHHHHHHHhc
Confidence 35778889998887755
No 64
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=42.18 E-value=77 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=19.9
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHh
Q 010150 93 VKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 93 vk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
++++.++.|+..+..|+..|...+
T Consensus 52 Lrkh~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 52 LRKHSNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHhc
Confidence 345567999999999999998754
No 65
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=41.49 E-value=64 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 97 PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 97 ~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
+...++++|+.||..|.+..+++. ..+..+.+-|+.-|
T Consensus 37 ~~~dl~eq~~~mL~~W~~~~~~~~---atv~~L~~AL~~~g 74 (86)
T cd08779 37 NRDDLDEQIFDMLFSWAQRQAGDP---DAVGKLVTALEESG 74 (86)
T ss_pred CccCHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHcC
Confidence 334699999999999999887643 23555666665544
No 66
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=40.94 E-value=1.5e+02 Score=33.23 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=61.4
Q ss_pred CcCHHHHHHHHHHHhcCCcc--HHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHHHhccCchhhhhhccHHH----
Q 010150 19 GPDWAINIELCDVINMDPGQ--AKDALKILKKRLGSKNPKVQLLA-------LFALETISKNCGDSVFQQIIERDI---- 85 (516)
Q Consensus 19 ~~Dw~~ileICD~In~~~~~--akeA~raIrKRLks~np~vql~A-------L~LLe~lVkNCG~~Fh~eVask~F---- 85 (516)
..+-+.+|.+|+..++--+. .++||+.|||+|.-.|.=.-+.+ =.|+..|++.....|-..+..+.|
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 34566788899988876554 59999999999987655444443 145566666665555555544333
Q ss_pred --HHHHHHHhccCCCHHH-HHHHHHHHHHHHHHh
Q 010150 86 --LHEMVKIVKKKPDLNV-REKILILIDTWQEAF 116 (516)
Q Consensus 86 --L~eLvklvk~k~d~~V-k~KIL~Ll~~W~~~F 116 (516)
++.++.+++.+. .++ .-++++.+..|...=
T Consensus 264 ~~~dt~~evl~r~~-l~~~e~~lfeA~lkw~~~e 296 (521)
T KOG2075|consen 264 STRDTYEEVLRRDT-LEAREFRLFEAALKWAEAE 296 (521)
T ss_pred hHHHHHHHHHhhcc-cchhHHHHHHHHHhhccCc
Confidence 444555555432 233 347788888887653
No 67
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=40.88 E-value=71 Score=27.05 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHhccCchhhhhhccHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 64 ALETISKNCGDSVFQQIIERDILHE-MVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 64 LLe~lVkNCG~~Fh~eVask~FL~e-Lvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
..+.+.+|-|.......-.=.|-+. |..+-...+ ..+++++.+||..|.+..+.. ..+..+.+-|+.-|
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~-~~~~eq~~~mL~~W~~~~g~~----At~~~L~~aL~~~~ 73 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHP-RNLREQVRQSLREWKKIKKKE----AKVADLIKALRDCQ 73 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHhHCcc----hHHHHHHHHHHHcC
Confidence 3556667777544432222245444 333333333 469999999999999987642 34555566665544
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=40.05 E-value=50 Score=24.67 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 010150 55 PKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILI 109 (516)
Q Consensus 55 p~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll 109 (516)
|.+...|+..|-.+..+|+..+...+ .+.+..|..+++. .+..||......|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d-~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQD-DDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTS-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 45667777778778888877666533 4677778888865 4459998886655
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=39.31 E-value=82 Score=35.86 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=68.9
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhc-CCcc----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINM-DPGQ----AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVF 77 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~-~~~~----akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh 77 (516)
+++.+++-+|-|.--+-.....-..||+.|-. ..-+ .+-.+-.|-+-+.+++...|-.++-+|..+|-||....+
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 45666666776662222222334678887643 2223 256677788888899999999999999999999977654
Q ss_pred hhhccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHH
Q 010150 78 QQIIERDILHEMVKIVK--KKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 78 ~eVask~FL~eLvklvk--~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.++-.+-= +.|++. +.++-.|++.++.++..+.
T Consensus 510 f~~Lakig---~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 510 FKFLAKIG---VEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhHHhcC---HHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 44332211 344443 3355678888887776644
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=38.77 E-value=2.6e+02 Score=33.09 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHHHhc----CCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc
Q 010150 20 PDWAINIELCDVINM----DPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK 95 (516)
Q Consensus 20 ~Dw~~ileICD~In~----~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~ 95 (516)
.+|..+ .|.+++.. +...+.+.+..+..+|+|.|+.|.+-|+.++=.+..+|...++.++. +++-.-|+.|..
T Consensus 232 ~EW~Qi-~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~s- 308 (746)
T PTZ00429 232 NEWGQL-YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLSR- 308 (746)
T ss_pred ChHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhhC-
Confidence 467643 33333332 23346778888999999999999999999988888777544444443 233333444432
Q ss_pred CCCHHHHHHHHHHH
Q 010150 96 KPDLNVREKILILI 109 (516)
Q Consensus 96 k~d~~Vk~KIL~Ll 109 (516)
.+++||--+|..|
T Consensus 309 -s~~eiqyvaLr~I 321 (746)
T PTZ00429 309 -RDAETQYIVCKNI 321 (746)
T ss_pred -CCccHHHHHHHHH
Confidence 2345555444444
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.27 E-value=6.4e+02 Score=28.59 Aligned_cols=98 Identities=23% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhh---c------cHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI---I------ERDILHEMVKIVKKKPDLNVREKILILID 110 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eV---a------sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~ 110 (516)
++--+.+||.|... .+.=--|+..||..+.+....|..-. . .++.+..+..-+.. =....++|=.|+.
T Consensus 146 ~~~y~~~rk~ll~~-~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~--l~~~~~~iP~l~~ 222 (569)
T PRK04778 146 KDLYRELRKSLLAN-RFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAA--LEQIMEEIPELLK 222 (569)
T ss_pred HHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 44444555555311 11111466777777777655554321 1 12233332222111 0134455666777
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCC
Q 010150 111 TWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPR 143 (516)
Q Consensus 111 ~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~ 143 (516)
.-...|.+ .+..+...|++|+.+||.|+..
T Consensus 223 ~~~~~~P~---ql~el~~gy~~m~~~gy~~~~~ 252 (569)
T PRK04778 223 ELQTELPD---QLQELKAGYRELVEEGYHLDHL 252 (569)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHcCCCCCCC
Confidence 77777864 5788999999999999999874
No 72
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=37.99 E-value=1.3e+02 Score=39.34 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
++..|.+-|+++++..|..|..+|-.++.+|++ ....|.+...+..|+++++...+..||+.+...|..-
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 677788888999999999999999899999875 4555666788999999998767778898887776443
No 73
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=37.37 E-value=1.2e+02 Score=26.60 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-CchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNC-GDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILID 110 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNC-G~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~ 110 (516)
.+.-++.|-.=+++...-.+-..|.||..+++.- |...-..++..+||..|++.+ ++..+.+|-++++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~----~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV----EPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC----CHHHHHHHHHHHh
Confidence 5666777777778887779999999999999998 778888899999988888554 4456666666654
No 74
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=36.86 E-value=2.8e+02 Score=33.04 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred hHHHHHHHHcCCCCCCcC-HHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---ccCchhhhh
Q 010150 4 NAAACAERATNDMLIGPD-WAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISK---NCGDSVFQQ 79 (516)
Q Consensus 4 ~~~~lIekATse~l~~~D-w~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVk---NCG~~Fh~e 79 (516)
-++..|.-+-++ -.+.+ -...++.|..|+..+.+.+-++.++-.|- ++++++..+|..|.-.|+ |--....++
T Consensus 4 diEqav~a~ndp-~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 4 DIEQAVNAVNDP-RVDSATKQQAIEYLNQIKSSPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred HHHHHHHhhCCC-cccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 445555544444 22333 34688999999999999999999887776 889999999999999887 223355566
Q ss_pred hccHHHHHHHHHHh-cc---CCCHHHHHHHHHHH---------HHHHHHhC
Q 010150 80 IIERDILHEMVKIV-KK---KPDLNVREKILILI---------DTWQEAFG 117 (516)
Q Consensus 80 Vask~FL~eLvklv-k~---k~d~~Vk~KIL~Ll---------~~W~~~F~ 117 (516)
+..+....=+.-.+ .+ +-+.-|+.|+-.++ ..|..-|-
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~ 131 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFD 131 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66555444444333 22 23456777765543 46777664
No 75
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=36.22 E-value=2.3e+02 Score=23.99 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc------C--CHHHHHHHhhhhHHHHH
Q 010150 186 EIQRAKGLADVLMEMLGALDS-KNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNT------A--DEELLCQGLALNDNLQR 256 (516)
Q Consensus 186 eLe~a~~n~~LL~EML~~~~P-~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v------~--DEelL~~LL~lNDeL~~ 256 (516)
-|..+.+++.-|..++..+-. .|...+ -+.|.++...|+.+-..+-..|... . +-..-...=.+..++..
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~~Ds~~l-R~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~ 82 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTPRDSQEL-REKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKE 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SSS--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 466777888888888877632 222222 2233556666666555555544332 1 11222334456667777
Q ss_pred HHHHHHhhh
Q 010150 257 VLRQHDDIA 265 (516)
Q Consensus 257 aL~kYd~l~ 265 (516)
+|..|..+.
T Consensus 83 ~l~~fq~~q 91 (102)
T PF14523_consen 83 ALQEFQKAQ 91 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=35.27 E-value=2.6e+02 Score=32.94 Aligned_cols=121 Identities=11% Similarity=0.174 Sum_probs=68.4
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNP--KVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np--~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++.||.-.|-+.. .++-.|-+| |. ...++.|++.+|-+-|...++ -.-+-=|.|+.-++-||-.++.....
T Consensus 435 klE~liR~LTpEk~---sIg~aM~Fa--le-nA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~ 508 (877)
T KOG0151|consen 435 KLEDLIRGLTPEKS---SIGDAMVFA--LE-NADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASA 508 (877)
T ss_pred HHHHHHHhcCcccc---hHHHHHHHH--Hh-hhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 45667766666644 233333333 32 234678888888888864321 12223466777778898766444332
Q ss_pred c-HHHHHHHHHHhcc----------C-CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 010150 82 E-RDILHEMVKIVKK----------K-PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNEL 133 (516)
Q Consensus 82 s-k~FL~eLvklvk~----------k-~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~L 133 (516)
= +.|-..|.+|+.. + .....++|++.+|+.|.+.|.-.. ..+..++...
T Consensus 509 YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqRV~kVirvWedW~ifpe---~~l~~l~~~F 569 (877)
T KOG0151|consen 509 YRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQRVMKVIRVWEDWAIFPE---DFLIGLQNTF 569 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHH
Confidence 1 2333334444432 1 234689999999999999976321 2345555443
No 77
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=35.06 E-value=1.1e+02 Score=26.23 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010150 183 SLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTA 239 (516)
Q Consensus 183 sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~ 239 (516)
...|+..+...+.-|+-.|+.+...+ +.+ ...+++|.+.+|+.|..+..-.....
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rn-D~l-~~~L~~LLesnrq~R~e~~~~~~~~~ 78 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRN-DHL-HAQLQELLESNRQIRLEFQEQLSKAP 78 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh-hHH-HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35678888888888888888874322 222 34578899999999999988776554
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.09 E-value=2.8e+02 Score=24.05 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKIL 106 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL 106 (516)
-.+.++-|-+-+...+.+|-++|..-|=.++|.++..+-..+ .+..+.|.|++.. ++..||.=+-
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D-~d~~Vr~~a~ 89 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSAD-PDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC-CchhHHHHHH
Confidence 466777777788899999999999999999999987664433 2455566666655 6778887553
No 79
>PTZ00429 beta-adaptin; Provisional
Probab=33.25 E-value=2e+02 Score=34.08 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=40.9
Q ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhcCCccH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh
Q 010150 9 AERATNDMLIGPDWAINIELCDVINMDPGQA--KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV 76 (516)
Q Consensus 9 IekATse~l~~~Dw~~ileICD~In~~~~~a--keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F 76 (516)
|.++..+..+----..++.+.-+...+++-. ..-+..|++-|..+|+.|+..||.+|..+..+++..+
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 3444443332222334555555555554332 1234556666788999999999999988887776543
No 80
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=33.01 E-value=3.3e+02 Score=23.67 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhc
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVK 94 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk 94 (516)
+-.|+-=+.|-.+.++.-|+.+||.|+++|+..+-..- -.+.|+-+..++.
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~-~~kil~~f~~ll~ 63 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGG-WVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhh-HHHHHHHHHHHHC
Confidence 44455556788999999999999999999998722221 1246666666663
No 81
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.98 E-value=1.2e+02 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCc
Q 010150 97 PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGV 138 (516)
Q Consensus 97 ~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv 138 (516)
.+..+.++|..+|..|.+..+.. ..+-.+.+-|+.-|+
T Consensus 37 ~p~~l~eQv~~mL~~W~~r~G~~----ATv~~L~~aL~~~~~ 74 (83)
T cd08319 37 HPHNVQSQIVEALVKWRQRFGKK----ATVQSLIQSLKAVEV 74 (83)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHcCC
Confidence 33479999999999999998742 346777777777664
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=32.79 E-value=1.1e+02 Score=20.49 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISKNC 72 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVkNC 72 (516)
+-.|.+-+++.+++|-..|+.-|-.++++|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 356778889999999999999999999887
No 83
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=32.77 E-value=3.2e+02 Score=30.41 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCc-cHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHHhccCchhh------------------hh
Q 010150 22 WAINIELCDVINMDPG-QAKDALKILKKRLGSKNPKVQLL---ALFALETISKNCGDSVF------------------QQ 79 (516)
Q Consensus 22 w~~ileICD~In~~~~-~akeA~raIrKRLks~np~vql~---AL~LLe~lVkNCG~~Fh------------------~e 79 (516)
-..+.-|+..|..... -++.|+++|++=.++...-.+++ .+.-|..++.+|....+ ..
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3455667777765443 35777777766655443222221 13333344444322111 12
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 80 IIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 80 Vask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
+.+..|++.+++.++. .|.-||--++++|...+.
T Consensus 198 ~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDS-DDILVQLNALELLSELAE 231 (503)
T ss_pred HHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc
Confidence 2234577777777777 788999999999999887
No 84
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.76 E-value=5.1e+02 Score=25.75 Aligned_cols=56 Identities=27% Similarity=0.279 Sum_probs=46.6
Q ss_pred CCCCcCHHHHH----HHHHHHhcCCccHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhc
Q 010150 16 MLIGPDWAINI----ELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKN 71 (516)
Q Consensus 16 ~l~~~Dw~~il----eICD~In~~~~~akeA~raIrKRL-ks~np~vql~AL~LLe~lVkN 71 (516)
...+..|...+ .+.|++...+....|.+..|..-| ++.++.++-+||..|..+.++
T Consensus 92 ~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 92 SSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 33456676655 577888888888899999999999 899999999999999998744
No 85
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.79 E-value=2.4e+02 Score=28.86 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 40 KDALKILKKRLG--SKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 40 keA~raIrKRLk--s~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
...++.|-+++. .....+=+..+.||+.++.|-.... ..++ .+|+..++.++....|++---.+.+++..-...|.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-Hhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 344444444332 3345555678889999999965444 3333 57999999999887888766666666666555554
No 86
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.72 E-value=2.8e+02 Score=25.76 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHH-HhccCC-CHHHHHHHHHHHHHHHHHhCCCC
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK-IVKKKP-DLNVREKILILIDTWQEAFGGPR 120 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvk-lvk~k~-d~~Vk~KIL~Ll~~W~~~F~~~~ 120 (516)
..+|-+-+.+.++.+-.++|.++-.|+.+-+..+..|+ .-|+..+.. ++..+. ...-|.-+|+.+..+-.. +
T Consensus 75 ~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el--e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~----p 148 (168)
T PF12783_consen 75 CPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL--EVFLSHIILRILESDNSSLWQKELALEILRELCKD----P 148 (168)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC----h
Confidence 34444444567799999999999999998877777776 568888777 665443 456777788887776532 1
Q ss_pred CCchHHHHHHHH
Q 010150 121 GRYPQYYAAYNE 132 (516)
Q Consensus 121 ~~~~~~~~~Y~~ 132 (516)
.-+.++|..
T Consensus 149 ---~~l~~lf~N 157 (168)
T PF12783_consen 149 ---QFLVDLFVN 157 (168)
T ss_pred ---hHHHHHHHH
Confidence 346666643
No 87
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.62 E-value=4.5e+02 Score=27.35 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHHHHhCCCCHHHHH-HHHHHHHH-HHhccCchhhhhhccHHHHHHHHHHhccC---------CCHHHHH
Q 010150 35 DPGQAKDALKILKKRLGSKNPKVQL-LALFALET-ISKNCGDSVFQQIIERDILHEMVKIVKKK---------PDLNVRE 103 (516)
Q Consensus 35 ~~~~akeA~raIrKRLks~np~vql-~AL~LLe~-lVkNCG~~Fh~eVask~FL~eLvklvk~k---------~d~~Vk~ 103 (516)
....++|-+.+|++-|.+.+.+--+ -|+.++-. |++- .|.+++|.++|.++++.| ++.+-..
T Consensus 56 ~~k~ardyls~l~r~ig~~~~kdKy~kA~R~f~~fl~~r-------giise~~Ae~lrk~lk~k~~~g~dlyIp~de~ir 128 (291)
T COG4342 56 CGKTARDYLSALNRPIGSVREKDKYQKAYRLFIKFLTSR-------GIISEEFAEKLRKPLKVKKSNGVDLYIPSDEEIR 128 (291)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHc-------ccccHHHHHHHHHHhccCcCCCcceecCCHHHHH
Confidence 3345889999999999653332222 24444433 4433 378899999999999754 2345556
Q ss_pred HHHHHHHHHHHH
Q 010150 104 KILILIDTWQEA 115 (516)
Q Consensus 104 KIL~Ll~~W~~~ 115 (516)
+.+++...|.+.
T Consensus 129 ~~~~l~r~~~e~ 140 (291)
T COG4342 129 ATEELAREYSER 140 (291)
T ss_pred HHHHHHHHhcch
Confidence 667777777653
No 88
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=30.31 E-value=1.7e+02 Score=24.68 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=33.9
Q ss_pred hhhhccHHHHHHHHHHhcc-CC---C----------HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 010150 77 FQQIIERDILHEMVKIVKK-KP---D----------LNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELR 134 (516)
Q Consensus 77 h~eVask~FL~eLvklvk~-k~---d----------~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK 134 (516)
+.-+...++++.|+..... .+ . ..+|.||+.+|..|-+.+..+ +..=..+++.|+
T Consensus 34 r~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~Wi~~~~~d---f~~~~~l~~~l~ 102 (104)
T PF00618_consen 34 RSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKYWIENYPDD---FRDDPELLEKLK 102 (104)
T ss_dssp HHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHHHHHHHCCC---CHH-HHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHChHh---hCCCHHHHHHHH
Confidence 3334556788888877731 11 1 138889999999999999863 433333455543
No 89
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=30.23 E-value=80 Score=23.10 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHhhccC-CHHHHHHHhhhhH-HHHHHHHHHHh
Q 010150 230 RVMLLVNNTA-DEELLCQGLALND-NLQRVLRQHDD 263 (516)
Q Consensus 230 rI~rLI~~v~-DEelL~~LL~lND-eL~~aL~kYd~ 263 (516)
+|.+++.-++ +++.-..+|+.|+ +|..|+..|=.
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3344433332 6777788888888 99999998843
No 90
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=30.20 E-value=6.8e+02 Score=26.44 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010150 190 AKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNT 238 (516)
Q Consensus 190 a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v 238 (516)
++.++.++.-+|+++-.+...+.++..+.-+.+-.+....++.+++..+
T Consensus 206 ~rR~L~lIaKvLQnLAN~~~f~~KE~~M~~ln~Fi~~~~~~~~~FL~~i 254 (315)
T cd05391 206 ACRTLMMVAKSVQNLANLVEFGAKEPYMEGVNPFIKSNKHRMIMFLDEL 254 (315)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666553333333345555555555555567777777654
No 91
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=29.18 E-value=1e+02 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 100 NVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 100 ~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
.+++.+..||..|....+.. ..+..+.+.|+.-|
T Consensus 44 ~~~~~~~~lL~~W~~~~g~~----at~~~L~~aL~~~~ 77 (88)
T smart00005 44 DLAEQSVQLLRLWEQREGKN----ATLGTLLEALRKMG 77 (88)
T ss_pred CHHHHHHHHHHHHHHccchh----hHHHHHHHHHHHcC
Confidence 58999999999999887642 34666777776655
No 92
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=28.80 E-value=1.7e+02 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhc
Q 010150 101 VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSA 136 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~ 136 (516)
+++++..+|..|....+.. ..+..+.+-|+.-
T Consensus 39 ~~~~~~~~L~~W~~~~~~~----at~~~L~~aL~~~ 70 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPN----ATVDQLIQALRDI 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHGST----SSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHC
Confidence 9999999999999995543 2344455555443
No 93
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.75 E-value=4.6e+02 Score=24.95 Aligned_cols=79 Identities=9% Similarity=0.185 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCcchHHHHH-HHHHHHHHHHHHHHHHhhcc----------------CCHHHHHHHhhh
Q 010150 188 QRAKGLADVLMEMLGALDSKNPEAVKQEIIV-DLVDQCRSYQKRVMLLVNNT----------------ADEELLCQGLAL 250 (516)
Q Consensus 188 e~a~~n~~LL~EML~~~~P~~~~~~~dEli~-EL~~qCr~~q~rI~rLI~~v----------------~DEelL~~LL~l 250 (516)
+.....++.+.+-+..+++...-..+.+.+. ++-..++.+...+..+...+ ....+...+-.+
T Consensus 71 ~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~ 150 (204)
T PF04740_consen 71 EEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKA 150 (204)
T ss_pred HHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHH
Confidence 3444444556665656654322234555565 66666666666655544321 134555566667
Q ss_pred hHHHHHHHHHHHhhhc
Q 010150 251 NDNLQRVLRQHDDIAK 266 (516)
Q Consensus 251 NDeL~~aL~kYd~l~~ 266 (516)
...|+..|++...+..
T Consensus 151 ~~~l~~~lekL~~fd~ 166 (204)
T PF04740_consen 151 KKKLQETLEKLRAFDQ 166 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777664
No 94
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=27.49 E-value=2.9e+02 Score=33.07 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=65.3
Q ss_pred CCcCHHHHHHHH----HHHhcC-----CccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHH
Q 010150 18 IGPDWAINIELC----DVINMD-----PGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHE 88 (516)
Q Consensus 18 ~~~Dw~~ileIC----D~In~~-----~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~e 88 (516)
...||....|.. +.+... .....+..+.|+.+++..|-++..+|+..|..+.+=-+..|...+. .....
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~ 340 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK--NVFPS 340 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH--hhcch
Confidence 346887655433 444332 2345788899999999999999999999999988877766555432 23333
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 89 MVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 89 Lvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
|...++.+. ..||+-++..++.|....
T Consensus 341 lld~lkekk-~~l~d~l~~~~d~~~ns~ 367 (815)
T KOG1820|consen 341 LLDRLKEKK-SELRDALLKALDAILNST 367 (815)
T ss_pred HHHHhhhcc-HHHHHHHHHHHHHHHhcc
Confidence 333333322 478999999999998744
No 95
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=26.72 E-value=58 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=17.5
Q ss_pred HHHHHhccCchhhhhh--ccHHHHHHHHHHhc
Q 010150 65 LETISKNCGDSVFQQI--IERDILHEMVKIVK 94 (516)
Q Consensus 65 Le~lVkNCG~~Fh~eV--ask~FL~eLvklvk 94 (516)
||.+|.|||. +..++ +...+-+++.+++.
T Consensus 7 ld~lv~~cg~-IrarleE~qa~i~~e~~~l~~ 37 (51)
T PF07197_consen 7 LDLLVVDCGS-IRARLEEIQAQIPDELAKLAT 37 (51)
T ss_pred HHHHHhccch-HHHHHHHHHHHhhHHHHHhcC
Confidence 7899999995 22222 23345556666654
No 96
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.91 E-value=2.9e+02 Score=29.99 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=58.1
Q ss_pred HHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 010150 30 DVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILIL 108 (516)
Q Consensus 30 D~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~L 108 (516)
-.+..++.-+..+++.|-|.=-..|+.-+..-|..|+.++..++..-...+. ..+...+.+++.. .+..|-+++|.+
T Consensus 244 ~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S-~h~qVAErAl~~ 320 (409)
T PF01603_consen 244 QFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISS-PHFQVAERALYF 320 (409)
T ss_dssp HHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTS-SSHHHHHHHHGG
T ss_pred HHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4466788889999999999988899999999999999999999866555554 3566777777665 678999998877
No 97
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=25.75 E-value=86 Score=26.68 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHhccCchhhhhhccHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhc
Q 010150 65 LETISKNCGDSVFQQIIERDILHEMVKIVKKKP-DLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSA 136 (516)
Q Consensus 65 Le~lVkNCG~~Fh~eVask~FL~eLvklvk~k~-d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~ 136 (516)
|+.+..|-|..-....-.=.|-+.=+..+...+ ...+++++..||..|....+.. ...+..+.+-|+.-
T Consensus 5 l~~l~~~lG~~Wk~lar~LG~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~g~~---~ATv~~L~~aL~~~ 74 (86)
T cd08777 5 LDLLRENLGKKWKRCARKLGFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKEGSK---GATVGKLAQALEGC 74 (86)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHccCCC---CcHHHHHHHHHHHc
Confidence 455556666543332222244444344444333 2358999999999999987632 23355555555543
No 98
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.51 E-value=5.6e+02 Score=23.97 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccC--CHHHHHHHhhhhHHHHHHHHHHH
Q 010150 185 AEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTA--DEELLCQGLALNDNLQRVLRQHD 262 (516)
Q Consensus 185 ~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~--DEelL~~LL~lNDeL~~aL~kYd 262 (516)
.++...+..+.-|..=|..+...-....-.+.|.+|-..|+.++.||..|-.... +++-+..+..-...+.+...+..
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666542211222355677899999999999999987533 35556666666666666655555
Q ss_pred hhh
Q 010150 263 DIA 265 (516)
Q Consensus 263 ~l~ 265 (516)
++.
T Consensus 166 ri~ 168 (169)
T PF07106_consen 166 RIC 168 (169)
T ss_pred HHh
Confidence 543
No 99
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=25.44 E-value=1.9e+02 Score=27.39 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=42.4
Q ss_pred ccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCC
Q 010150 71 NCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPR 120 (516)
Q Consensus 71 NCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~ 120 (516)
+....|...++++.++..++++++......|+-.+|..+.-|-+..+...
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~ 62 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSET 62 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCc
Confidence 44466889999999999999999887778999999999999988887643
No 100
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=25.30 E-value=1.6e+02 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 99 LNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
..+.+++..+|..|.+..+.. ..+..+.+.|+.-|
T Consensus 41 ~~~~eq~~~mL~~W~~r~g~~----at~~~L~~AL~~i~ 75 (84)
T cd08317 41 NSLAQQAQAMLKLWLEREGKK----ATGNSLEKALKKIG 75 (84)
T ss_pred CCHHHHHHHHHHHHHHhcCCc----chHHHHHHHHHHcC
Confidence 357899999999999997643 23445555555433
No 101
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=6e+02 Score=29.86 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=83.4
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCc--cHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHHhccC----ch
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPG--QAKDALKILKKRLGSKNPKVQLLAL--FALETISKNCG----DS 75 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~--~akeA~raIrKRLks~np~vql~AL--~LLe~lVkNCG----~~ 75 (516)
+...+|.-|-+-....++. .+.++-+++++... -.....|.|.+-++...-...+.-= .|+|.|+--|. +.
T Consensus 58 p~~~mi~sa~nkg~Ide~~-~~~~lk~~l~s~~~~i~~d~~lr~i~~~k~~~~l~~~l~~~n~dlvekll~~~s~~p~d~ 136 (880)
T COG3002 58 PLDRMIASAPNKGEIDEPF-AAAELKQLLASHMYMIPSDYHLRWINKQKQLADLPQALAEQNSDLVEKLLIEASQQPTDP 136 (880)
T ss_pred chHHHHHhcccccccChHH-HHHHHHHHHhccCCCCcHHHHHHHHHHHhhcccchHHHHhhchhHHHHHHHHHhcCCccc
Confidence 3456777777777777777 67788888887543 2467778888777765444433332 55555555443 22
Q ss_pred hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC-------CCCchHHHHHHHHHHhcCcCC
Q 010150 76 VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGP-------RGRYPQYYAAYNELRSAGVEF 140 (516)
Q Consensus 76 Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~-------~~~~~~~~~~Y~~LK~~Gv~F 140 (516)
.|.-. -+++.|...+.......+-+.|-..|..|...|-++ +++-.+|+.+|+.|-.-...|
T Consensus 137 ~en~~---~~~~t~ss~idle~ge~ln~~vn~qiik~s~~ylD~~qa~wtMP~reegffrawrelaq~dl~~ 205 (880)
T COG3002 137 SENWP---LLCDTVSSRIDLEHGEALNDAVNHQIIKWSKLYLDHHQADWTMPDREEGFFRAWRELAQHDLLL 205 (880)
T ss_pred ccccc---cccccHHHHhhhhcchHHHHHHHHHHHHHHHHHHhcccccccCCcchhHHHHHHHHHHHhChhh
Confidence 22221 233334433333345678888888899999887753 345678999999987654444
No 102
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=24.58 E-value=3e+02 Score=27.42 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHH-HhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc-----cHHHHHHHHHHh
Q 010150 20 PDWAINIELCDV-INMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII-----ERDILHEMVKIV 93 (516)
Q Consensus 20 ~Dw~~ileICD~-In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa-----sk~FL~eLvklv 93 (516)
++|=.-+.+|=+ .|++..++-.+.+.|.+-+-+.+. .=|.-..++||.+|+..=+ .++++..+..++
T Consensus 37 e~lf~ELsFCILTANsSA~~~~~~q~~lG~gfly~~~-------eEL~e~Lk~~g~Rf~n~raeyIVeaR~~~~~lk~~v 109 (210)
T COG1059 37 EDLFKELSFCILTANSSATMGLRAQNELGDGFLYLSE-------EELREKLKEVGYRFYNVRAEYIVEAREKFDDLKIIV 109 (210)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhccccccCCH-------HHHHHHHHHhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 455555555533 234444455555555555555443 3355666899999998644 356666777777
Q ss_pred ccCCCHHH
Q 010150 94 KKKPDLNV 101 (516)
Q Consensus 94 k~k~d~~V 101 (516)
+...+..|
T Consensus 110 ~~~~~~~v 117 (210)
T COG1059 110 KADENEKV 117 (210)
T ss_pred hcCcchHH
Confidence 75555554
No 103
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.51 E-value=3.2e+02 Score=26.22 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 48 KRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 48 KRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
+-..+.+..+++.|+.+|+.+++.+ -+|- ...+-.|+.|... ++..||+++..++..-.+.+.
T Consensus 15 ~~~~~~~~~vr~~Al~~l~~il~qG--LvnP----~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 15 ELCLSSDDSVRLAALQVLELILRQG--LVNP----KQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhcC--CCCh----HHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhH
Confidence 3345899999999999999999986 4444 3566778887776 778999999999888876654
No 104
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.47 E-value=63 Score=36.30 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHhcCCcc------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 010150 28 LCDVINMDPGQ------AKDALKILKKRLGSKNPKVQLLALFALETISKNC 72 (516)
Q Consensus 28 ICD~In~~~~~------akeA~raIrKRLks~np~vql~AL~LLe~lVkNC 72 (516)
++.+|...+-. -.+.+..|||.|+|++++|..-||+||+++|...
T Consensus 131 la~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 131 LANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 56666665522 3688899999999999999999999999999753
No 105
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=24.29 E-value=2.4e+02 Score=27.33 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=44.6
Q ss_pred CHHHHH-HHHHHHhcCCcc--HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHH
Q 010150 21 DWAINI-ELCDVINMDPGQ--AKDALKILKKRLG-SKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK 91 (516)
Q Consensus 21 Dw~~il-eICD~In~~~~~--akeA~raIrKRLk-s~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvk 91 (516)
|+...+ .+||.|..+... -.+....|..-|. ...|.|-|-+|.|+-.+++-||..........-.+++++.
T Consensus 41 ~Y~~d~n~mcd~i~~~~~S~~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~~~~ti~m~~~l~~dIi~ 115 (167)
T PF11099_consen 41 DYKRDFNSMCDIIEANDISYNIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKWGNKNKTIHMDSLLSNDIID 115 (167)
T ss_dssp HTHHHHHHHHHHHHCCCCTT-HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhcccccccHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 344443 389988776543 4777777877777 4569999999999999999886444333332334444443
No 106
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=24.27 E-value=8.2e+02 Score=25.50 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=28.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHh-CCCCCCchHHHHHHHHHHhcCc
Q 010150 93 VKKKPDLNVREKILILIDTWQEAF-GGPRGRYPQYYAAYNELRSAGV 138 (516)
Q Consensus 93 vk~k~d~~Vk~KIL~Ll~~W~~~F-~~~~~~~~~~~~~Y~~LK~~Gv 138 (516)
+.....+.||+++..+-..|...+ ......-.......+.|-.=|+
T Consensus 96 ~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi 142 (290)
T PF07899_consen 96 ISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGI 142 (290)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCC
Confidence 345567899999999999999999 3322112223334444444454
No 107
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=24.02 E-value=95 Score=27.35 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 83 RDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 83 k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
+.||..|+++.+++..++|.+++..||+..-++
T Consensus 7 k~FL~tLi~las~~~spev~~~Vr~LV~~L~~~ 39 (96)
T PF07531_consen 7 KNFLNTLIQLASDKQSPEVGENVRELVQNLVDG 39 (96)
T ss_dssp HHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Confidence 689999999998866677888888888776644
No 108
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.49 E-value=7.3e+02 Score=29.74 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 98 DLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 98 d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
+..+|.-|..-|...++.|.-+ +-=.|-.+.+-|+..|
T Consensus 398 d~~~k~~~as~I~~laEkfaP~--k~W~idtml~Vl~~aG 435 (866)
T KOG1062|consen 398 DEDFKADIASKIAELAEKFAPD--KRWHIDTMLKVLKTAG 435 (866)
T ss_pred cHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcc
Confidence 6677777777777777777643 2234555556666666
No 109
>COG3515 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.43 E-value=2.6e+02 Score=29.71 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=62.1
Q ss_pred HHHHHHHcCCCCCC-cCHHHHHHHHHHHhc-CCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 010150 6 AACAERATNDMLIG-PDWAINIELCDVINM-DPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIE 82 (516)
Q Consensus 6 ~~lIekATse~l~~-~Dw~~ileICD~In~-~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVas 82 (516)
...++++-...-.+ -||..+.++|..+-. ....-+-|+=..+-|++-.--..-.-.+++|..|+.|-++.+|.++..
T Consensus 37 ~~e~~~~~~~~~~~~~dW~~v~~la~~L~~~~~kDlrva~~l~~A~~~~~GlaGL~eglella~l~~~~~d~l~pq~~~ 115 (346)
T COG3515 37 REELQTLLKVAEPEQVDWTAVEELALALLRARSKDLRVAAWLTRARLRTQGLAGLAEGLELLAALLANYWDALWPQLEG 115 (346)
T ss_pred hHHHHhccccccccccchHHHHHHHHHHHHhccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccchhhCcCCcc
Confidence 34445554444455 899999999988876 556788888888889888778888889999999999999999999844
No 110
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=23.41 E-value=2.3e+02 Score=29.59 Aligned_cols=91 Identities=9% Similarity=0.131 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHH-HHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 39 AKDALKILKKRLG-SKNPKVQLLAL-FALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 39 akeA~raIrKRLk-s~np~vql~AL-~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
...++..+.++|. ....-.++-+. .+-|.=|+.|...|-..+++.+|..-+.+++.. ...+|...=+++..|-..+
T Consensus 189 ~~~a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a--~m~~r~~~~~~~e~~L~~l 266 (293)
T PF09712_consen 189 WMKAFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNA--LMDLRKQQQEVVEEYLRSL 266 (293)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC
Confidence 3667777777773 11112222222 567888889999999999999999999999876 3578888889999998887
Q ss_pred CCCCCCchHHHHHHHHH
Q 010150 117 GGPRGRYPQYYAAYNEL 133 (516)
Q Consensus 117 ~~~~~~~~~~~~~Y~~L 133 (516)
.-+. -..|-++|++|
T Consensus 267 ~lPT--r~evd~l~k~l 281 (293)
T PF09712_consen 267 NLPT--RSEVDELYKRL 281 (293)
T ss_pred CCCC--HHHHHHHHHHH
Confidence 6432 23456666554
No 111
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.40 E-value=1.5e+02 Score=32.08 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=33.3
Q ss_pred hccCchhhh-------hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 70 KNCGDSVFQ-------QIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 70 kNCG~~Fh~-------eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
.+||..||. -+.+++|+++|..+.... ...-+++++.+|..-.+....
T Consensus 261 ~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~-~l~~~~~~~klL~~i~~E~~~ 315 (380)
T COG1867 261 PHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL-ELGTKKRALKLLKLIKKELDI 315 (380)
T ss_pred CcccccceeccCcccCcccCHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHhhcCC
Confidence 466766654 355899999999988764 345667777777766666543
No 112
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.09 E-value=4.9e+02 Score=34.02 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHhccC---chhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010150 52 SKNPKVQLLALFALETISKNCG---DSVFQQIIERDILHEMVKIVKKKPDLNVREKILILID 110 (516)
Q Consensus 52 s~np~vql~AL~LLe~lVkNCG---~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~ 110 (516)
|+|.++.++||..|..|.--+- +.-|..+ .++||.-+..++.+..+..||+.|++.|.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~F-QkefLkPfe~im~~s~~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNF-QNEFMKPFVIVMRKSNAVEIRELIIRCVS 1208 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhH-HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 6788888888887766433221 1111111 25788888888887778899999988775
No 113
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.22 E-value=4.2e+02 Score=28.20 Aligned_cols=67 Identities=28% Similarity=0.430 Sum_probs=45.7
Q ss_pred HcCCCCCCcCHHH-HHHHHHHHhcCCccHHHHHHHHHHHh----CCC-CHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 010150 12 ATNDMLIGPDWAI-NIELCDVINMDPGQAKDALKILKKRL----GSK-NPKVQLLALFALETISKNCGDSVFQQIIE 82 (516)
Q Consensus 12 ATse~l~~~Dw~~-ileICD~In~~~~~akeA~raIrKRL----ks~-np~vql~AL~LLe~lVkNCG~~Fh~eVas 82 (516)
|++.....+||.. +.++++.|-....-++ +-.+|+|| .|- .|++.+. .||+.|+.||....+.+++.
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~--L~~vR~~LYeLL~~CIPP~~Ilk--~Ll~~Ll~~~d~~~k~~~~~ 313 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARVILKEQSPAK--LLEVRGRLYELLSHCIPPNTILK--ELLEELLLKCDTQLKLEVIQ 313 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhccCChHHHHH--HHHHHHHhcCCchhHHHHHH
Confidence 4556777899985 6679988876543332 33344444 454 5666664 57899999999888888764
No 114
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=22.15 E-value=1.9e+02 Score=31.02 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=52.3
Q ss_pred HHHHHHHHH--HHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 39 AKDALKILK--KRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 39 akeA~raIr--KRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
-|.|+|-|| |-|+|.| -+.|+|.|=++---..-.|+++.-.|++|.+.-..-....||..+..+|..-. |
T Consensus 45 kKIAlREIrmLKqLkH~N------LVnLiEVFrrkrklhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~--~ 116 (396)
T KOG0593|consen 45 KKIALREIRMLKQLKHEN------LVNLIEVFRRKRKLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIH--F 116 (396)
T ss_pred HHHHHHHHHHHHhcccch------HHHHHHHHHhcceeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhh--h
Confidence 377888766 5567764 36789999888644455678999999999987666556678888888887643 5
Q ss_pred CC
Q 010150 117 GG 118 (516)
Q Consensus 117 ~~ 118 (516)
++
T Consensus 117 cH 118 (396)
T KOG0593|consen 117 CH 118 (396)
T ss_pred hh
Confidence 53
No 115
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=22.14 E-value=3.4e+02 Score=27.64 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 45 ILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 45 aIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
.+-.=|.+++..++.++|.+|=.|..|- ......++ .+-+..+..|+..+.+.++--+++.++..-...++.
T Consensus 138 ~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 138 DLLSLLSSGSEKTKVQVLKVLVNLSENP-DMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCH-HHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 3334456789999999999999998875 23333333 357788888888877888888888888887777664
No 116
>PRK07360 FO synthase subunit 2; Reviewed
Probab=22.07 E-value=80 Score=33.73 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCC----ccHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHHhccC
Q 010150 1 MANNAAACAERATNDMLIGPDWAINIELCDVINMDP----GQAKDALKILKKRLGSKNPKVQL---LALFALETISKNCG 73 (516)
Q Consensus 1 m~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~----~~akeA~raIrKRLks~np~vql---~AL~LLe~lVkNCG 73 (516)
|+..+..+++|+.+..-. ... ++..+.+... ..--.+++.||++...+. +.+ .-|.+-..|..||.
T Consensus 3 ~~~~~~~~~~~~~~g~~l--s~~---e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~--v~~~~~~~i~~Tn~C~~~C~ 75 (371)
T PRK07360 3 TDQIFEDILERARKGKDL--SKE---DALELLETTEPRRIFEILELADRLRKEQVGDT--VTYVVNRNINFTNICEGHCG 75 (371)
T ss_pred chHHHHHHHHHHhcCCCC--CHH---HHHHHhcCCChHHHHHHHHHHHHHHHHhcCCe--EEEEeccCcccchhhhcCCc
Confidence 556678889999875221 222 2333343322 113566777888775332 322 23566789999996
Q ss_pred ch-hhhh--------hccHHHHHHHHHHhccC---------CCHH--HHHHHHHHHHHHHHHhCCCCCC-c---------
Q 010150 74 DS-VFQQ--------IIERDILHEMVKIVKKK---------PDLN--VREKILILIDTWQEAFGGPRGR-Y--------- 123 (516)
Q Consensus 74 ~~-Fh~e--------Vask~FL~eLvklvk~k---------~d~~--Vk~KIL~Ll~~W~~~F~~~~~~-~--------- 123 (516)
.- |... +...++++.+....... .++. --+.++++|....+.|.+-.-. +
T Consensus 76 fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~ 155 (371)
T PRK07360 76 FCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAA 155 (371)
T ss_pred cCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHH
Confidence 52 2221 22233444433333221 1222 2467888888888766421100 1
Q ss_pred ----hHHHHHHHHHHhcCcC
Q 010150 124 ----PQYYAAYNELRSAGVE 139 (516)
Q Consensus 124 ----~~~~~~Y~~LK~~Gv~ 139 (516)
....+.|++||..|+.
T Consensus 156 ~~~G~~~~e~l~~LkeAGld 175 (371)
T PRK07360 156 REDGLSYEEVLKALKDAGLD 175 (371)
T ss_pred hhcCCCHHHHHHHHHHcCCC
Confidence 1246889999999975
No 117
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=21.83 E-value=54 Score=28.23 Aligned_cols=15 Identities=53% Similarity=0.944 Sum_probs=11.7
Q ss_pred CCCCcc-hHHHHHHhc
Q 010150 435 PPSRYN-QRQQFFEQN 449 (516)
Q Consensus 435 ~~~~~~-~~~~~~~~~ 449 (516)
.|+||| |+-+|||+-
T Consensus 34 ~~srY~~~QskFFe~~ 49 (90)
T PLN00017 34 APSRYNPLQSKFFETF 49 (90)
T ss_pred CCCCCChHHHHHHHHH
Confidence 368999 667899974
No 118
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=21.60 E-value=1.4e+02 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 83 RDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 83 k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
++||..|+++.+....++|-+++..||+..-++
T Consensus 6 k~FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~ 38 (92)
T smart00549 6 KRFLTTLIQLSNDISQPEVAERVRTLVLGLVNG 38 (92)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 689999999998755477777777777776544
No 119
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=21.31 E-value=2.2e+02 Score=29.90 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=21.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 94 KKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 94 k~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
+++.+..|+..+..||..|...+..
T Consensus 53 rkh~~~~I~~lAk~li~~WK~~v~~ 77 (299)
T TIGR01385 53 RKHPNEDISKLAKKIIKSWKKVVDK 77 (299)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHhh
Confidence 4457789999999999999998864
No 120
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=21.26 E-value=2.4e+02 Score=30.05 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=54.9
Q ss_pred CcCHHHHHHHHHHHh-cCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHH
Q 010150 19 GPDWAINIELCDVIN-MDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDI 85 (516)
Q Consensus 19 ~~Dw~~ileICD~In-~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~F 85 (516)
..||..+.++|..+- .....-+-++-.++-.++.....--..+|.||..|+.+-.+.+|-.....++
T Consensus 51 ~~DW~~V~~~~~~lL~~~sKDLrv~~~l~~a~~~~~Gl~Gl~~gl~ll~~ll~~~Wd~l~P~~~~~~~ 118 (353)
T TIGR03363 51 AADWPAVERLASELLKTRSKDLRLAAWLTEAWLQLRGLPGLADGLALVAGLLERYWDDVHPLLDDDDD 118 (353)
T ss_pred ccCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcchhcCCCCCCCch
Confidence 579999999998765 5555678888888888877677777789999999999999999998765443
No 121
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.22 E-value=5.3e+02 Score=22.15 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCC
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPR 120 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~ 120 (516)
+..+.+.+-|.++.+-+.-.+|.+|..|+++.. ...+.-...++-+...++. .|.-|==.++..+-..++.+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~~- 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPDE- 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChHH-
Confidence 455566667777878888888888888888875 1111123444444444443 35455555555555555555431
Q ss_pred CCchHHHHHHH
Q 010150 121 GRYPQYYAAYN 131 (516)
Q Consensus 121 ~~~~~~~~~Y~ 131 (516)
-++.+.+.|.
T Consensus 78 -vl~~L~~~y~ 87 (92)
T PF10363_consen 78 -VLPILLDEYA 87 (92)
T ss_pred -HHHHHHHHHh
Confidence 2455555554
No 122
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.18 E-value=3.6e+02 Score=23.05 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHhccCchhhhhhc--cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 63 FALETISKNCGDSVFQQII--ERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 63 ~LLe~lVkNCG~~Fh~eVa--sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.--+.++..+|+.+...+. +.+|++.|.-+--.+.+.+||+ ..+.|+.|..
T Consensus 23 ~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrR-lqKAL~ew~~ 75 (82)
T PF04904_consen 23 QYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRR-LQKALQEWST 75 (82)
T ss_pred HHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHH-HHHHHHHHhc
Confidence 4457789999999988765 4577765433333444567764 5566778874
No 123
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.85 E-value=2e+02 Score=22.89 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCc
Q 010150 101 VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGV 138 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv 138 (516)
+.+++..||..|....+.. ..+..+++.|++-|.
T Consensus 37 ~~~~~~~mL~~W~~~~~~~----at~~~L~~aL~~~~~ 70 (79)
T cd01670 37 VREQAYQLLLKWEEREGDN----ATVGNLIEALREIGR 70 (79)
T ss_pred HHHHHHHHHHHHHhccCcC----cHHHHHHHHHHHcCH
Confidence 8999999999999988742 346667777766553
No 124
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=2.2e+02 Score=27.42 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--Hhh-----------ccCCHHHHHHHhhhhHHHHH
Q 010150 215 EIIVDLVDQCRSYQKRVML--LVN-----------NTADEELLCQGLALNDNLQR 256 (516)
Q Consensus 215 Eli~EL~~qCr~~q~rI~r--LI~-----------~v~DEelL~~LL~lNDeL~~ 256 (516)
|-..+|.+.|+.+...+-| ||. ..+|.++|.++|+++|+|.+
T Consensus 56 eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~ 110 (168)
T KOG3192|consen 56 EQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISE 110 (168)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHh
Confidence 3344555666655555433 221 12367777777777777653
No 125
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.49 E-value=2.4e+02 Score=23.77 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 83 RDILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 83 k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
++||.-+..|+....+..||+++++.|..--...
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~ 49 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSR 49 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 5788888888877788899999998887766654
No 126
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.13 E-value=1.3e+02 Score=35.59 Aligned_cols=117 Identities=11% Similarity=0.221 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhh--hccHHHHHHHHHHhcc--CC
Q 010150 22 WAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQ--IIERDILHEMVKIVKK--KP 97 (516)
Q Consensus 22 w~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~e--Vask~FL~eLvklvk~--k~ 97 (516)
=+.|+.|....-..-..-|.+|..+-|.|+.-.+.--+-+|-+||.+|...-+-|..+ +-..+|...+.+-+.+ +.
T Consensus 23 ~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCkpe~Kl~gLYVIDSIVRqsrhq~~~~kd~F~prf~~n~~~tf~~L~~c 102 (894)
T KOG0132|consen 23 GSKILKITKAAIKAIKLYKHVVQSVEKFIKKCKPEYKLPGLYVIDSIVRQSRHQFGKEKDVFGPRFSKNFTGTFQNLYEC 102 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCeeEEehHHHHHHHHhhcccccccCCccchhHHHHHHHHHhc
Confidence 3455555543222112357778888888887677777889999999998543333311 1112333333332221 23
Q ss_pred CHHHHHHHHHHHHHHHHH--hCCCCCCchHHHHHHHHHHhcCc-CCCCC
Q 010150 98 DLNVREKILILIDTWQEA--FGGPRGRYPQYYAAYNELRSAGV-EFPPR 143 (516)
Q Consensus 98 d~~Vk~KIL~Ll~~W~~~--F~~~~~~~~~~~~~Y~~LK~~Gv-~FP~~ 143 (516)
..+.|.+|+..+-.|+.. |+. ..|.-+.++....|- .||.-
T Consensus 103 ~~edks~iIrvlNlwqkn~VfK~-----e~IqpLlDm~~~s~~~~~p~~ 146 (894)
T KOG0132|consen 103 PQEDKSDIIRVLNLWQKNNVFKS-----EIIQPLLDMADGSGLSVFPKS 146 (894)
T ss_pred CHHHHHHHHHhhhhhhcccchhH-----HHHHHHHHHHhccCccccCCC
Confidence 457788999999999986 642 356666666666664 46543
No 127
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.11 E-value=2.6e+02 Score=23.85 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=42.1
Q ss_pred HHHHHhccCchhhhhhccHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 65 LETISKNCGDSVFQQIIERDILHE-MVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 65 Le~lVkNCG~~Fh~eVask~FL~e-Lvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
|+.+.+|-|..-......-.|-+. +..|-.. .+-.+.+++..+|..|....+. ...+..++.-|++-|
T Consensus 7 l~~Ia~~LG~dW~~Lar~L~vs~~dI~~I~~e-~p~~l~~Q~~~~L~~W~~r~g~----~At~~~L~~AL~~i~ 75 (84)
T cd08805 7 MAVIREHLGLSWAELARELQFSVEDINRIRVE-NPNSLLEQSTALLNLWVDREGE----NAKMSPLYPALYSID 75 (84)
T ss_pred HHHHHHHhcchHHHHHHHcCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcCc----cchHHHHHHHHHHCC
Confidence 445556666655444333344443 4444333 3345999999999999998864 345667777776643
No 128
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.03 E-value=4.7e+02 Score=24.66 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=50.9
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHh--cCCc-----cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVIN--MDPG-----QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV 76 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In--~~~~-----~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F 76 (516)
.+...|+.+..- .|-+...++--+++ ..++ .+-+.+-.|..=|+++...-..-||..|..++++.|..+
T Consensus 29 ~~k~ai~~~~~~----~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 29 DIKGAIEYAVRM----NDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred cHHHHHHHHHhc----CCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 57777777777776 3332 356677778888899999999999999999999988776
Q ss_pred hhh
Q 010150 77 FQQ 79 (516)
Q Consensus 77 h~e 79 (516)
+..
T Consensus 105 ~~~ 107 (164)
T PF13925_consen 105 RSN 107 (164)
T ss_pred HHH
Confidence 644
Done!