Query 010150
Match_columns 516
No_of_seqs 229 out of 737
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ldz_A STAM-1, signal transduc 100.0 1.3E-43 4.5E-48 323.7 16.8 138 2-141 3-140 (140)
2 1x5b_A Signal transducing adap 100.0 4E-43 1.4E-47 328.2 19.2 145 2-147 13-157 (163)
3 1juq_A ADP-ribosylation factor 100.0 1.4E-42 4.8E-47 326.9 18.3 152 2-158 11-169 (171)
4 1mhq_A ADP-ribosylation factor 100.0 3.3E-42 1.1E-46 317.4 17.7 137 5-145 2-143 (148)
5 3g2s_A C-terminal fragment of 100.0 4.8E-41 1.6E-45 310.0 17.6 134 2-139 9-147 (149)
6 1elk_A Target of MYB1; superhe 100.0 6E-41 2.1E-45 311.6 18.2 139 3-142 15-157 (157)
7 3zyq_A Hepatocyte growth facto 100.0 2.3E-40 8E-45 324.2 17.4 144 2-146 6-149 (226)
8 3rru_A TOM1L1 protein; structu 100.0 1.2E-39 4.2E-44 301.5 13.6 135 2-137 14-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 1.3E-37 4.5E-42 303.0 19.3 149 2-152 3-151 (220)
10 1wrd_A TOM1, target of MYB pro 99.8 4.6E-21 1.6E-25 166.5 9.2 93 180-272 8-100 (103)
11 1oxz_A ADP-ribosylation factor 99.8 5E-21 1.7E-25 181.9 7.6 114 161-274 45-167 (186)
12 1naf_A ADP-ribosylation factor 99.8 4.4E-20 1.5E-24 171.2 8.5 113 162-274 30-151 (158)
13 1o3x_A ADP-ribosylation factor 99.8 7E-20 2.4E-24 167.0 8.9 111 161-271 20-139 (140)
14 1wr6_A ADP-ribosylation factor 99.8 1.8E-19 6E-24 158.4 7.0 94 181-274 4-98 (111)
15 1vdy_A Hypothetical protein (R 98.2 7.5E-06 2.6E-10 74.5 10.3 104 6-112 13-128 (140)
16 1sz9_A PCF11 protein; RNA poly 98.1 2.4E-05 8.3E-10 71.2 12.7 115 21-137 23-139 (144)
17 1inz_A EPS15-interacting porte 97.9 6.7E-05 2.3E-09 68.8 11.3 110 3-113 22-139 (148)
18 1xgw_A Epsin 4; ENTH, enthopro 97.9 0.00013 4.6E-09 68.6 13.2 108 3-113 33-151 (176)
19 1eyh_A Epsin; superhelix of he 97.7 0.00016 5.5E-09 66.0 10.5 108 3-114 4-122 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.6 0.00025 8.7E-09 65.1 9.9 108 3-114 10-129 (150)
21 2pjw_H Uncharacterized protein 97.0 0.00077 2.6E-08 56.6 5.0 76 191-268 9-86 (88)
22 4flb_A Regulation of nuclear P 96.8 0.0036 1.2E-07 55.4 8.6 93 22-115 21-113 (132)
23 2pjw_V Vacuolar protein sortin 96.5 0.013 4.6E-07 49.4 9.1 79 184-267 5-83 (91)
24 3d9j_A RNA-binding protein 16; 96.4 0.0072 2.5E-07 54.8 7.8 91 24-115 25-120 (145)
25 4fu3_A Regulation of nuclear P 95.7 0.0072 2.4E-07 53.5 4.1 90 24-115 22-114 (135)
26 3zyl_A Phosphatidylinositol-bi 95.4 0.046 1.6E-06 54.5 8.9 75 2-76 26-100 (271)
27 1hx8_A Synapse-enriched clathr 95.2 0.081 2.8E-06 53.3 10.2 78 3-80 22-99 (299)
28 3zym_A Phosphatidylinositol-bi 95.2 0.055 1.9E-06 54.9 8.9 74 3-76 27-100 (310)
29 2qk2_A LP04448P; mini spindles 94.4 0.26 8.8E-06 46.5 11.0 94 19-115 26-128 (242)
30 2km4_A Regulator of TY1 transp 93.6 0.56 1.9E-05 42.0 10.9 91 24-115 21-116 (142)
31 2qk1_A Protein STU2; STU2P, XM 91.8 1.1 3.9E-05 43.1 11.2 93 39-135 144-239 (249)
32 3b2a_A TON_1937, putative unch 90.8 0.73 2.5E-05 45.5 8.6 93 40-134 32-124 (265)
33 2qk1_A Protein STU2; STU2P, XM 89.8 1.8 6E-05 41.8 10.4 98 18-117 26-136 (249)
34 3clj_A Protein NRD1; CTD-inter 89.0 2.2 7.6E-05 39.2 9.8 100 18-117 18-134 (157)
35 2qk2_A LP04448P; mini spindles 87.9 6.8 0.00023 36.5 12.9 77 38-117 130-208 (242)
36 4hxt_A De novo protein OR329; 87.0 3 0.0001 38.0 9.6 108 3-113 2-114 (252)
37 4ffb_C Protein STU2; tubulin f 84.4 4 0.00014 39.2 9.5 98 17-115 18-133 (278)
38 4ffb_C Protein STU2; tubulin f 84.4 1.9 6.5E-05 41.6 7.1 75 39-117 137-215 (278)
39 3f1i_H Hepatocyte growth facto 83.2 3.1 0.0001 35.2 6.8 72 186-259 5-76 (98)
40 4db6_A Armadillo repeat protei 82.9 4.6 0.00016 36.2 8.7 71 41-113 138-208 (210)
41 4hxt_A De novo protein OR329; 81.1 15 0.00052 33.2 11.7 97 19-117 139-244 (252)
42 3f1i_S STAM-1, signal transduc 81.0 8.2 0.00028 31.4 8.3 71 193-266 6-76 (77)
43 1xqr_A HSPBP1 protein; armadil 79.9 6.2 0.00021 39.2 9.1 87 25-113 146-237 (296)
44 4db6_A Armadillo repeat protei 74.8 14 0.00048 32.9 9.3 93 19-113 23-124 (210)
45 1ibr_B P95, importin beta-1 su 74.2 18 0.00062 35.9 10.7 92 39-133 364-456 (462)
46 3dad_A FH1/FH2 domain-containi 72.1 17 0.00059 37.2 9.9 94 42-139 203-307 (339)
47 1xqr_A HSPBP1 protein; armadil 71.9 7.9 0.00027 38.4 7.3 71 42-113 82-153 (296)
48 2jdq_A Importin alpha-1 subuni 71.7 16 0.00056 36.3 9.7 72 41-113 107-178 (450)
49 4db8_A Armadillo-repeat protei 69.5 12 0.0004 34.4 7.6 70 41-112 54-123 (252)
50 2of3_A ZYG-9; multifunctional 67.3 23 0.00077 35.0 9.4 95 20-116 58-163 (266)
51 3ltm_A Alpha-REP4; protein eng 66.3 18 0.0006 32.5 7.9 80 18-112 91-170 (211)
52 4b8j_A Importin subunit alpha- 65.6 26 0.00089 36.2 10.1 73 42-115 161-233 (528)
53 3ltj_A Alpharep-4; protein eng 64.7 37 0.0013 30.0 9.7 78 20-112 26-103 (201)
54 3ltj_A Alpharep-4; protein eng 64.5 30 0.001 30.6 9.1 81 18-113 86-166 (201)
55 4db8_A Armadillo-repeat protei 64.4 14 0.00048 33.8 7.0 71 41-113 138-208 (252)
56 1hu3_A EIF4GII; heat repeat, t 64.2 27 0.00092 33.8 9.2 91 23-117 148-242 (260)
57 3nmw_A APC variant protein; AR 63.9 19 0.00064 36.5 8.4 70 42-111 128-197 (354)
58 3tt9_A Plakophilin-2; cell adh 63.2 22 0.00076 34.1 8.3 71 42-113 53-123 (233)
59 2jdq_A Importin alpha-1 subuni 61.2 35 0.0012 33.8 9.7 73 41-114 318-390 (450)
60 4b8j_A Importin subunit alpha- 61.0 17 0.00058 37.6 7.6 74 40-113 73-146 (528)
61 2of3_A ZYG-9; multifunctional 59.7 28 0.00097 34.3 8.5 72 39-117 165-239 (266)
62 3ltm_A Alpha-REP4; protein eng 59.5 43 0.0015 29.8 9.2 78 20-112 31-108 (211)
63 1b3u_A Protein (protein phosph 58.1 31 0.0011 35.4 9.0 68 40-112 518-585 (588)
64 2vgl_A Adaptor protein complex 57.5 38 0.0013 36.8 9.9 69 39-111 327-395 (621)
65 1wa5_B Importin alpha subunit; 57.0 29 0.00099 36.0 8.6 95 20-115 353-458 (530)
66 1w63_A Adapter-related protein 56.9 33 0.0011 37.0 9.2 57 20-76 289-348 (618)
67 1te4_A Conserved protein MTH18 56.7 46 0.0016 27.7 8.4 75 20-109 54-128 (131)
68 1w63_A Adapter-related protein 56.5 27 0.00091 37.7 8.4 82 24-114 90-171 (618)
69 1qgr_A Protein (importin beta 56.1 84 0.0029 34.1 12.4 77 39-118 364-441 (876)
70 1jdh_A Beta-catenin; beta-cate 55.4 42 0.0014 34.2 9.3 71 42-114 102-172 (529)
71 2z6g_A B-catenin; FULL-length, 55.0 32 0.0011 38.3 9.0 71 42-114 235-305 (780)
72 2bpt_A Importin beta-1 subunit 53.9 55 0.0019 35.5 10.5 77 40-118 638-715 (861)
73 4fdd_A Transportin-1; heat rep 53.2 98 0.0034 34.1 12.5 72 38-112 439-510 (852)
74 3l6x_A Catenin delta-1; cateni 52.5 23 0.00079 38.7 7.1 70 42-111 91-160 (584)
75 1jdh_A Beta-catenin; beta-cate 52.0 49 0.0017 33.6 9.2 72 40-112 16-87 (529)
76 1ibr_B P95, importin beta-1 su 51.9 43 0.0015 33.2 8.5 73 40-114 127-203 (462)
77 2z6h_A Catenin beta-1, beta-ca 50.9 49 0.0017 35.4 9.4 72 40-112 13-84 (644)
78 3nmz_A APC variant protein; pr 50.2 36 0.0012 35.8 8.0 72 42-113 244-315 (458)
79 2z6h_A Catenin beta-1, beta-ca 49.6 47 0.0016 35.6 8.9 71 42-114 99-169 (644)
80 4f52_E Glomulin; cullin-ring E 47.9 41 0.0014 36.9 8.1 93 40-133 316-413 (596)
81 3tjz_B Coatomer subunit gamma; 47.7 15 0.0005 37.8 4.3 69 4-72 139-207 (355)
82 2bpt_A Importin beta-1 subunit 47.5 1.3E+02 0.0045 32.5 12.2 76 39-117 367-443 (861)
83 1wa5_B Importin alpha subunit; 46.5 33 0.0011 35.6 6.9 73 40-112 86-158 (530)
84 2z6g_A B-catenin; FULL-length, 46.5 60 0.0021 36.1 9.4 73 39-112 148-220 (780)
85 1xm9_A Plakophilin 1; armadill 46.4 51 0.0018 33.9 8.3 72 41-113 44-115 (457)
86 1b3u_A Protein (protein phosph 46.0 91 0.0031 31.9 10.2 74 40-118 401-474 (588)
87 4fdd_A Transportin-1; heat rep 45.6 81 0.0028 34.8 10.3 75 41-118 629-703 (852)
88 3tpo_A Importin subunit alpha- 45.3 59 0.002 34.0 8.7 69 42-110 77-145 (529)
89 2vgl_B AP-2 complex subunit be 43.9 49 0.0017 35.3 7.9 51 23-73 140-192 (591)
90 3grl_A General vesicular trans 43.3 74 0.0025 35.3 9.3 107 26-138 111-222 (651)
91 2vgl_B AP-2 complex subunit be 42.9 41 0.0014 35.9 7.1 39 27-65 72-110 (591)
92 2vso_E Eukaryotic initiation f 42.4 1E+02 0.0034 30.1 9.3 86 24-113 176-278 (284)
93 3tt9_A Plakophilin-2; cell adh 41.0 58 0.002 31.1 7.2 70 43-114 10-81 (233)
94 2wpv_A GET4, UPF0363 protein Y 40.8 1.4E+02 0.0047 30.0 10.2 77 50-132 64-142 (312)
95 1xm9_A Plakophilin 1; armadill 40.4 49 0.0017 34.1 7.0 70 43-114 4-73 (457)
96 3dad_A FH1/FH2 domain-containi 40.2 87 0.003 32.0 8.6 166 41-247 160-327 (339)
97 1qgr_A Protein (importin beta 39.1 1.5E+02 0.0052 32.0 11.1 97 18-117 376-482 (876)
98 1oyz_A Hypothetical protein YI 37.7 60 0.002 30.3 6.7 56 41-111 192-247 (280)
99 3ul1_B Importin subunit alpha- 37.5 1.2E+02 0.004 31.6 9.5 70 42-112 359-428 (510)
100 1oyz_A Hypothetical protein YI 35.9 1.4E+02 0.0047 27.7 8.9 60 39-111 126-185 (280)
101 1wjt_A Transcription elongatio 35.6 77 0.0026 26.8 6.2 22 97-118 67-88 (103)
102 2vgl_A Adaptor protein complex 35.4 1.1E+02 0.0038 33.1 9.1 79 27-112 506-587 (621)
103 2ii0_A SOS-1, SON of sevenless 35.0 3.8E+02 0.013 28.1 13.0 86 4-95 46-161 (490)
104 3b2a_A TON_1937, putative unch 35.0 92 0.0032 30.7 7.4 69 39-112 148-216 (265)
105 3ul1_B Importin subunit alpha- 34.3 1.1E+02 0.0038 31.8 8.7 27 25-51 59-86 (510)
106 1u6g_C TIP120 protein, CAND1; 33.9 2.2E+02 0.0074 32.9 11.8 75 39-116 131-206 (1230)
107 3tpo_A Importin subunit alpha- 32.3 1.6E+02 0.0055 30.6 9.5 71 42-113 378-448 (529)
108 1u6g_C TIP120 protein, CAND1; 31.5 1.4E+02 0.0048 34.4 9.7 74 42-117 435-509 (1230)
109 1te4_A Conserved protein MTH18 31.1 1.5E+02 0.0052 24.4 7.5 57 43-112 44-100 (131)
110 2o71_A Death domain-containing 30.8 53 0.0018 28.2 4.5 38 97-138 59-96 (115)
111 3l6x_A Catenin delta-1; cateni 30.3 1.1E+02 0.0039 33.2 8.1 72 40-113 47-118 (584)
112 2of5_A Death domain-containing 29.7 60 0.0021 27.8 4.7 70 65-138 27-96 (114)
113 3ezq_B Protein FADD; apoptosis 29.3 79 0.0027 27.4 5.4 67 65-137 9-77 (122)
114 1fad_A Protein (FADD protein); 28.8 39 0.0013 27.7 3.2 35 99-137 51-85 (99)
115 3ayh_A DNA-directed RNA polyme 26.0 62 0.0021 28.5 4.2 55 25-79 56-122 (136)
116 2x19_B Importin-13; nuclear tr 25.1 91 0.0031 34.8 6.4 70 40-113 528-598 (963)
117 3nmw_A APC variant protein; AR 24.6 1.3E+02 0.0045 30.2 6.9 71 42-114 264-334 (354)
118 2x1g_F Cadmus; transport prote 24.6 1.5E+02 0.005 33.3 8.0 85 28-117 533-618 (971)
119 1vf6_C Maguk P55 subfamily mem 24.3 33 0.0011 27.1 1.8 51 214-266 13-63 (72)
120 2l7a_A Talin-1; vinculin, bund 23.6 1.4E+02 0.0048 26.4 6.0 47 213-259 69-122 (131)
121 3now_A UNC-45 protein, SD10334 23.1 1.3E+02 0.0043 34.2 7.0 69 42-111 709-779 (810)
122 3m1i_C Exportin-1; heat repeat 23.0 1.8E+02 0.0061 33.2 8.4 44 34-77 533-576 (1049)
123 2qdj_A Retinoblastoma-associat 22.2 3E+02 0.01 27.5 8.9 103 23-133 4-121 (304)
124 2of5_H Leucine-rich repeat and 20.8 47 0.0016 28.4 2.3 71 63-137 14-85 (118)
125 4e17_B Catenin alpha-1; four h 20.7 86 0.003 22.3 3.2 23 215-237 12-34 (40)
No 1
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=1.3e-43 Score=323.74 Aligned_cols=138 Identities=28% Similarity=0.509 Sum_probs=133.9
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
+|+++++|+|||++.+.++||++|++|||+||+++.+++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~eva 82 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVC 82 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHS
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCC
Q 010150 82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFP 141 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP 141 (516)
+++|+++|++++++ +++.||+||+++|+.|+++|++++ .|..|.++|++||++||+||
T Consensus 83 s~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 83 SRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP-QLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp SHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG-GGTHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHccCcCc
Confidence 99999999999964 789999999999999999999875 58999999999999999998
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=4e-43 Score=328.22 Aligned_cols=145 Identities=31% Similarity=0.543 Sum_probs=139.3
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.|+++.+|+|||++.+.++||++|++|||+||.++.+++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva 92 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC 92 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCC
Q 010150 82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENS 147 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s 147 (516)
+++||++|++++++++++.||+||++||+.|+++|++++ .|..|.++|++||++||+||..+..+
T Consensus 93 s~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~~~ 157 (163)
T 1x5b_A 93 SRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP-QFSLISATIKSMKEEGITFPPAGSQT 157 (163)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS-TTHHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 999999999999988999999999999999999999876 59999999999999999999987543
No 3
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=1.4e-42 Score=326.94 Aligned_cols=152 Identities=26% Similarity=0.430 Sum_probs=135.4
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++++++|+|||++.+.++||++|++|||+||.++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~eva 90 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVG 90 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCC--CCCCCCCCCCCCCC
Q 010150 82 ERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEF--PPRAENSVPFFTPP 154 (516)
Q Consensus 82 sk~FL~eLvklvk~k-----~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~F--P~~~~~s~Pi~tPp 154 (516)
+++||++|+++++++ ++..||+|||+||+.|+++|++ ++.|.++|++||++||.| |..+. +.++|+||
T Consensus 91 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~~~-~~~~f~~p 165 (171)
T 1juq_A 91 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPIPV-DRTLIPSP 165 (171)
T ss_dssp SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCBCC-CTTCC---
T ss_pred hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCCCc-cccCCCCC
Confidence 999999999999754 5789999999999999999986 578999999999999998 66553 45789988
Q ss_pred CCCC
Q 010150 155 QTQP 158 (516)
Q Consensus 155 ~t~~ 158 (516)
.+++
T Consensus 166 ~~~~ 169 (171)
T 1juq_A 166 PPRP 169 (171)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 4
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=3.3e-42 Score=317.37 Aligned_cols=137 Identities=22% Similarity=0.389 Sum_probs=130.9
Q ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 5 AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 5 ~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
++++|+|||++.+.++||++|++|||+||.++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCC
Q 010150 85 ILHEMVKIVKKK-----PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAE 145 (516)
Q Consensus 85 FL~eLvklvk~k-----~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~ 145 (516)
||++|+++++++ ++..||+|||+||+.|+.+|++ .+.|.++|++||++||.||..+.
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCCCCC
Confidence 999999999753 5889999999999999999986 46799999999999999998764
No 5
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=4.8e-41 Score=309.97 Aligned_cols=134 Identities=28% Similarity=0.396 Sum_probs=128.6
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
+++++.+|+|||++.+.++||++|++|||+||.++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia 88 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG 88 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcC
Q 010150 82 ERDILHEMVKIVKKK-----PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVE 139 (516)
Q Consensus 82 sk~FL~eLvklvk~k-----~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~ 139 (516)
+++||++|+++++++ ++..||+|||+||+.|+.+|++ .++|.++|++||++||.
T Consensus 89 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 89 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 999999999999764 6889999999999999999986 47799999999999986
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=6e-41 Score=311.64 Aligned_cols=139 Identities=37% Similarity=0.622 Sum_probs=131.7
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLG-SKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLk-s~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
++++.+|+|||++.+.++||++|++|||+||.++.+++||+|+|+|||+ ++|+++|++||+|||+||||||.+||.+|+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva 94 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA 94 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999998 599999999999999999999999999999
Q ss_pred cHHHHHH-HHHHhccC--CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCC
Q 010150 82 ERDILHE-MVKIVKKK--PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPP 142 (516)
Q Consensus 82 sk~FL~e-Lvklvk~k--~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~ 142 (516)
+++||++ |++++.++ ++..||+||+++|+.|+++|++++ .|..|.++|++||++||+||.
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p-~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSP-DLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCC
Confidence 9999999 89999643 457999999999999999999875 599999999999999999994
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=2.3e-40 Score=324.21 Aligned_cols=144 Identities=32% Similarity=0.621 Sum_probs=138.2
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
+++++++|+|||++.|.++||++|++|||+||.+++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia 85 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA 85 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCC
Q 010150 82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAEN 146 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~ 146 (516)
+++||++|++|++++++..||+|||+||+.|+++|++++ +|+.|.++|++||++||+||..++.
T Consensus 86 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~~ 149 (226)
T 3zyq_A 86 NKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP-KYKVVQDTYQIMKVEGHVFPEFKES 149 (226)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCCcccchhH
Confidence 999999999999988999999999999999999999875 6999999999999999999997643
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=301.48 Aligned_cols=135 Identities=30% Similarity=0.522 Sum_probs=127.6
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS-KNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks-~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
+++++.+|+|||++.+.++||++|++|||+||.++.+++||+|+|+|||++ +|+++|++||+|||+||||||.+||.+|
T Consensus 14 ~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 14 ATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp GSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 589999999999999999999999999999999999999999999999996 6999999999999999999999999999
Q ss_pred ccHHHHHH-HHHHhccC--CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 81 IERDILHE-MVKIVKKK--PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 81 ask~FL~e-Lvklvk~k--~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
++++||++ |+++++++ .+..||+|||+||+.|+++|++++ .|..|.++|++|+++|
T Consensus 94 ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p-~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGV-DVSEVKEVYLDLVKKG 152 (152)
T ss_dssp SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSC-CCHHHHHHHHHHHHC-
T ss_pred HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHCc
Confidence 99999998 99999764 466899999999999999999876 6999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=1.3e-37 Score=303.03 Aligned_cols=149 Identities=30% Similarity=0.547 Sum_probs=139.0
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII 81 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa 81 (516)
.++++++|+|||++.+.++||++|++|||+||.++++++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus 3 ~~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva 82 (220)
T 1dvp_A 3 RSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVF 82 (220)
T ss_dssp CSHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHS
T ss_pred cchHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCCCCCCC
Q 010150 82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFT 152 (516)
Q Consensus 82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s~Pi~t 152 (516)
+++||++|++++++.++..||+|||++|+.|+++|++++ .|..|.++|+.|+.+|+.||...+ ..++|+
T Consensus 83 ~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~~~e-~~a~f~ 151 (220)
T 1dvp_A 83 TKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELRE-ADAMFT 151 (220)
T ss_dssp SHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCCC----CCC
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcCcccccccc-cccccc
Confidence 999999999999887889999999999999999999875 699999999999999999998753 345554
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.84 E-value=4.6e-21 Score=166.46 Aligned_cols=93 Identities=29% Similarity=0.423 Sum_probs=85.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHH
Q 010150 180 SGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLR 259 (516)
Q Consensus 180 ~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~ 259 (516)
..++.++|++|+++++||+|||++++|+++...++|+|+|||++||++|+||++||+.++||++|+++|++||+|+++|.
T Consensus 8 ~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~ 87 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFL 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHH
Confidence 34566899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCC
Q 010150 260 QHDDIAKGTPTAQ 272 (516)
Q Consensus 260 kYd~l~~g~~~~~ 272 (516)
+|+++.+|.....
T Consensus 88 ry~~~~~~~~~~~ 100 (103)
T 1wrd_A 88 RHERFERFRTGQT 100 (103)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHhcCCCCCC
Confidence 9999999876543
No 11
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.83 E-value=5e-21 Score=181.92 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=94.1
Q ss_pred CCCcccchH--HHhhhccc-----ccccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcc-hHHHHHHHHHHHHHHHHHHH
Q 010150 161 EPTSAFDDA--AIQASLQS-----DASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAV-KQEIIVDLVDQCRSYQKRVM 232 (516)
Q Consensus 161 ~~p~~~~~a--~iq~~lq~-----e~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~-~dEli~EL~~qCr~~q~rI~ 232 (516)
+.|++++.| .|+.++.. +..+++..+|++|+++++||+|||++++|++.... ++|+++|||++||+||++|+
T Consensus 45 ~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~ 124 (186)
T 1oxz_A 45 SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF 124 (186)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHH
Confidence 346677776 44444432 23355667999999999999999999999988877 89999999999999999999
Q ss_pred HHhhccC-CHHHHHHHhhhhHHHHHHHHHHHhhhcCCCCCCCC
Q 010150 233 LLVNNTA-DEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQST 274 (516)
Q Consensus 233 rLI~~v~-DEelL~~LL~lNDeL~~aL~kYd~l~~g~~~~~e~ 274 (516)
+||+.++ ||++|+++|++||+|++||.+|+++++|....++.
T Consensus 125 ~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~ 167 (186)
T 1oxz_A 125 RLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDA 167 (186)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC-----
T ss_pred HHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCccc
Confidence 9998775 69999999999999999999999999999887654
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.80 E-value=4.4e-20 Score=171.18 Aligned_cols=113 Identities=19% Similarity=0.324 Sum_probs=87.9
Q ss_pred CCcccchH--HHhhhccc-----ccccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcc-hHHHHHHHHHHHHHHHHHHHH
Q 010150 162 PTSAFDDA--AIQASLQS-----DASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAV-KQEIIVDLVDQCRSYQKRVML 233 (516)
Q Consensus 162 ~p~~~~~a--~iq~~lq~-----e~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~-~dEli~EL~~qCr~~q~rI~r 233 (516)
.|++++.| .|+.++.. +..+++..+|++|+++++||+|||++++|++.... ++|+++|||++||++|++|++
T Consensus 30 ~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~ 109 (158)
T 1naf_A 30 HPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFR 109 (158)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHH
T ss_pred ChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 47788888 45554443 23355667999999999999999999999988777 899999999999999999999
Q ss_pred HhhccC-CHHHHHHHhhhhHHHHHHHHHHHhhhcCCCCCCCC
Q 010150 234 LVNNTA-DEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQST 274 (516)
Q Consensus 234 LI~~v~-DEelL~~LL~lNDeL~~aL~kYd~l~~g~~~~~e~ 274 (516)
||+.++ ||++|+++|.+||+|++||.+|+++++|....++.
T Consensus 110 Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~ 151 (158)
T 1naf_A 110 LASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDA 151 (158)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCcc
Confidence 998875 69999999999999999999999999999887653
No 13
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.80 E-value=7e-20 Score=167.03 Aligned_cols=111 Identities=19% Similarity=0.331 Sum_probs=89.5
Q ss_pred CCCcccchH--HHhhhccc-----ccccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcc-hHHHHHHHHHHHHHHHHHHH
Q 010150 161 EPTSAFDDA--AIQASLQS-----DASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAV-KQEIIVDLVDQCRSYQKRVM 232 (516)
Q Consensus 161 ~~p~~~~~a--~iq~~lq~-----e~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~-~dEli~EL~~qCr~~q~rI~ 232 (516)
+.|++++.| .|+.++.. +..+++..+|++|+++++||+|||++++|++.... ++|+++|||++||++|++|+
T Consensus 20 ~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~ 99 (140)
T 1o3x_A 20 SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF 99 (140)
T ss_dssp -------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 346777776 34433332 23345667999999999999999999999988877 89999999999999999999
Q ss_pred HHhhccC-CHHHHHHHhhhhHHHHHHHHHHHhhhcCCCCC
Q 010150 233 LLVNNTA-DEELLCQGLALNDNLQRVLRQHDDIAKGTPTA 271 (516)
Q Consensus 233 rLI~~v~-DEelL~~LL~lNDeL~~aL~kYd~l~~g~~~~ 271 (516)
+||+.++ ||++|+++|.+||+|++||.+|+.+++|.+..
T Consensus 100 ~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~~ 139 (140)
T 1o3x_A 100 RLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVN 139 (140)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCC
Confidence 9998875 68999999999999999999999999998764
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.78 E-value=1.8e-19 Score=158.35 Aligned_cols=94 Identities=22% Similarity=0.350 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccC-CHHHHHHHhhhhHHHHHHHH
Q 010150 181 GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTA-DEELLCQGLALNDNLQRVLR 259 (516)
Q Consensus 181 ~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~-DEelL~~LL~lNDeL~~aL~ 259 (516)
+++..+|++++++++||+|||++++|++....+.|+++|||.+|++||++|++||+.+. ||++|++||.+||+|+++|.
T Consensus 4 ~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~ 83 (111)
T 1wr6_A 4 TKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVIN 83 (111)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHH
Confidence 44557999999999999999999999998888899999999999999999999998876 68899999999999999999
Q ss_pred HHHhhhcCCCCCCCC
Q 010150 260 QHDDIAKGTPTAQST 274 (516)
Q Consensus 260 kYd~l~~g~~~~~e~ 274 (516)
+|+++++|....++.
T Consensus 84 rY~~~~~g~~~~~~~ 98 (111)
T 1wr6_A 84 SYKTIIEGQVINGEV 98 (111)
T ss_dssp HHHHTTTCC------
T ss_pred HHHHHhcCCCCCCcc
Confidence 999999999887653
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.18 E-value=7.5e-06 Score=74.50 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCcc-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH
Q 010150 6 AACAERATNDMLIGPDWAINIELCDVINMDPGQ-AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD 84 (516)
Q Consensus 6 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~-akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~ 84 (516)
..+|.+||+..-..+--.+.-||+++....... ..+++..|-|||+++++++.+-||.||+.|++|+...|..++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 357999999976666667788999999876544 5999999999999999999999999999999999988888775432
Q ss_pred HHHHHHHHhcc---CCC--------HHHHHHHHHHHHHH
Q 010150 85 ILHEMVKIVKK---KPD--------LNVREKILILIDTW 112 (516)
Q Consensus 85 FL~eLvklvk~---k~d--------~~Vk~KIL~Ll~~W 112 (516)
.. ++.+.. .++ ..||+++-+++...
T Consensus 93 --~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 --VA-VRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp --HH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 22 333322 112 47998888887653
No 16
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.14 E-value=2.4e-05 Score=71.25 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHH
Q 010150 21 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLN 100 (516)
Q Consensus 21 Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~ 100 (516)
.-..|-.+..+.-.....++.++.+|.++|+.-+|..-+.+|-|+|..|+|||..|+..++. .+.+.+..... ..|..
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~-~~d~~ 100 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL-LVDNT 100 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH-TSCHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH-hCCHH
Confidence 44445555555445556799999999999999999999999999999999999999877765 23333333333 36889
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCch--HHHHHHHHHHhcC
Q 010150 101 VREKILILIDTWQEAFGGPRGRYP--QYYAAYNELRSAG 137 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~F~~~~~~~~--~~~~~Y~~LK~~G 137 (516)
+|.|+..|+..|.+.|.+..+-|+ .+..+-+.|...|
T Consensus 101 ~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 101 TRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999988665322343 3455555565543
No 17
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.92 E-value=6.7e-05 Score=68.79 Aligned_cols=110 Identities=24% Similarity=0.236 Sum_probs=85.1
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS--KNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks--~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
++++..|..||+...-+|.-..+-+||+.-.. .....+.++.|.|||.. ++.++.+-||.|||.|++|+.++|-..+
T Consensus 22 s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 100 (148)
T 1inz_A 22 SEAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQC 100 (148)
T ss_dssp CCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999889988899999998766 46779999999999985 5899999999999999999988877665
Q ss_pred ccHHH-HHHHHH--Hhc-cCC--CHHHHHHHHHHHHHHH
Q 010150 81 IERDI-LHEMVK--IVK-KKP--DLNVREKILILIDTWQ 113 (516)
Q Consensus 81 ask~F-L~eLvk--lvk-~k~--d~~Vk~KIL~Ll~~W~ 113 (516)
.+.-+ +..|.. .+. ... ...||+|+-.++....
T Consensus 101 r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 101 KENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhC
Confidence 43322 222332 111 112 3589999988887644
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.90 E-value=0.00013 Score=68.60 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=84.5
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhccCchhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRL-G--SKNPKVQLLALFALETISKNCGDSVFQQ 79 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRL-k--s~np~vql~AL~LLe~lVkNCG~~Fh~e 79 (516)
++++.+|..||+..--+|.-..+-+||+.-... ....+.+..|.||| + .++.+..+-||+|||.|++|+.++|-..
T Consensus 33 s~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~ 111 (176)
T 1xgw_A 33 SEIESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTS 111 (176)
T ss_dssp CHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 578999999999988888888999999886553 56799999999996 4 4799999999999999999998877776
Q ss_pred hccHHHHHHHHHHhc------cCCC--HHHHHHHHHHHHHHH
Q 010150 80 IIERDILHEMVKIVK------KKPD--LNVREKILILIDTWQ 113 (516)
Q Consensus 80 Vask~FL~eLvklvk------~k~d--~~Vk~KIL~Ll~~W~ 113 (516)
+ ++.+..|..|-. ...| ..||+|+-+++....
T Consensus 112 ~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 112 A--REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp H--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred H--HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 6 344444333321 1122 579999999887654
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.74 E-value=0.00016 Score=66.00 Aligned_cols=108 Identities=26% Similarity=0.281 Sum_probs=83.5
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS--KNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks--~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
++++..|..||+...-+|.-..+-+||+.-.. .....+++..|.|||.. ++.++.+-||.|||.|++|+.++|-..+
T Consensus 4 s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~ 82 (144)
T 1eyh_A 4 SEAEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQC 82 (144)
T ss_dssp CHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999889998999999987654 35678999999999986 4899999999999999999988776654
Q ss_pred ccHHHHHHHHHHhcc-------CCC--HHHHHHHHHHHHHHHH
Q 010150 81 IERDILHEMVKIVKK-------KPD--LNVREKILILIDTWQE 114 (516)
Q Consensus 81 ask~FL~eLvklvk~-------k~d--~~Vk~KIL~Ll~~W~~ 114 (516)
.+. +.. ++.++. ..| ..||+|+-.++....+
T Consensus 83 ~~~--~~~-i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 83 KEN--MYA-VQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHT--HHH-HHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred HHh--hHH-HhhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 332 111 222222 112 4799999998887664
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.61 E-value=0.00025 Score=65.12 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=82.6
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhccCchhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGS---KNPKVQLLALFALETISKNCGDSVFQQ 79 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks---~np~vql~AL~LLe~lVkNCG~~Fh~e 79 (516)
++++..|..||+...-+|.-..+-+|++.--. ...-.+.+..|.|||.. ++.+..+-||+|||.|++|+.++|-.+
T Consensus 10 s~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~ 88 (150)
T 3onk_A 10 TEMEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDD 88 (150)
T ss_dssp CHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999998888888888888876543 34568999999999963 489999999999999999998887777
Q ss_pred hccHHHHHHHHHHhcc-------CCC--HHHHHHHHHHHHHHHH
Q 010150 80 IIERDILHEMVKIVKK-------KPD--LNVREKILILIDTWQE 114 (516)
Q Consensus 80 Vask~FL~eLvklvk~-------k~d--~~Vk~KIL~Ll~~W~~ 114 (516)
+.+- +..|. .+.. ..| ..||+|+-+++....+
T Consensus 89 ~r~~--~~~i~-~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 89 TRNS--INLIR-ILETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp HHTT--HHHHH-GGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHH--HHHHH-hhhcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 6443 22222 2322 112 4899999999887653
No 21
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00077 Score=56.61 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhccCCCC-C-CcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcCC
Q 010150 191 KGLADVLMEMLGALDSKN-P-EAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGT 268 (516)
Q Consensus 191 ~~n~~LL~EML~~~~P~~-~-~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~g~ 268 (516)
..+++-|-++|...+|.. - +..+++.|++||.+|-.+|++|.++|....... .+|+.+|+.|.++..-|+.+....
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~s 86 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDRA 86 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888898876632 2 567888999999999999999999999876432 378899999999999999987643
No 22
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.85 E-value=0.0036 Score=55.40 Aligned_cols=93 Identities=10% Similarity=0.071 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHH
Q 010150 22 WAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNV 101 (516)
Q Consensus 22 w~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~V 101 (516)
-..|-.+...+-.....+++.+.+|.++|+...+...+..|-|++.+++||+.+....+. +.|-..|..++..-.+..+
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~ 99 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR-ESFADVLPEAAALVKDPSV 99 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHHhCCHHH
Confidence 345555665555555679999999999999888999999999999999999876554443 2354555555554446789
Q ss_pred HHHHHHHHHHHHHH
Q 010150 102 REKILILIDTWQEA 115 (516)
Q Consensus 102 k~KIL~Ll~~W~~~ 115 (516)
|+|+..+|..|.+.
T Consensus 100 ~~kl~~ll~iW~~r 113 (132)
T 4flb_A 100 SKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999985
No 23
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.013 Score=49.39 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHh
Q 010150 184 LAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDD 263 (516)
Q Consensus 184 l~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~ 263 (516)
..|.+.+.--+.++..|-.. | .....+++-+++||+++-.+|+||.+.|.....- ...|+++|+.|..|..-||+
T Consensus 5 ~~e~d~I~lF~~lv~~~k~~--~-~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~ 79 (91)
T 2pjw_V 5 DEEKDSIYMFASLVEKMKSR--P-LNEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDR 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--S-CSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC--C-cccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34555555445555554433 2 2345688999999999999999999999876532 24789999999999999999
Q ss_pred hhcC
Q 010150 264 IAKG 267 (516)
Q Consensus 264 l~~g 267 (516)
+...
T Consensus 80 lLE~ 83 (91)
T 2pjw_V 80 LLEQ 83 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 24
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.43 E-value=0.0072 Score=54.83 Aligned_cols=91 Identities=11% Similarity=0.206 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhh---hhccHHHHHHHHHHhcc--CCC
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQ---QIIERDILHEMVKIVKK--KPD 98 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~---eVask~FL~eLvklvk~--k~d 98 (516)
.|-.|....-.....++..+..|.++|+.-.+..-+-+|-|+|..++|+|..... .++ ..|...|.+++.. +.+
T Consensus 25 ~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 25 KMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCC
Confidence 4444444444444568999999999999888888999999999999999985432 222 3566666666542 345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010150 99 LNVREKILILIDTWQEA 115 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~ 115 (516)
..+|.||..|+..|.+.
T Consensus 104 ~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 104 GDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp GGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 89999999999999863
No 25
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.74 E-value=0.0072 Score=53.48 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---CchhhhhhccHHHHHHHHHHhccCCCHH
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNC---GDSVFQQIIERDILHEMVKIVKKKPDLN 100 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNC---G~~Fh~eVask~FL~eLvklvk~k~d~~ 100 (516)
.|-.+...+-.....+++.+.+|.++|+...+...+..|-|++.+++|| |..|...+.. .|-.+...+-...+..
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~--~l~~~~~~~~~~~~~~ 99 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFES--VLVDAFSHVAREADEG 99 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHT--THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHcCCHH
Confidence 4455555554555679999999999998777778899999999999999 4444444432 2333222222223457
Q ss_pred HHHHHHHHHHHHHHH
Q 010150 101 VREKILILIDTWQEA 115 (516)
Q Consensus 101 Vk~KIL~Ll~~W~~~ 115 (516)
+|+|+..+|..|.+.
T Consensus 100 ~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 100 CKKPLERLLNIWQER 114 (135)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999974
No 26
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=95.37 E-value=0.046 Score=54.54 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=65.6
Q ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh
Q 010150 2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV 76 (516)
Q Consensus 2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F 76 (516)
.+.++..|-|||+.....|+-..+-+|.-..........+.+++|.+||+.+|..+.+-||.++..|+..+.+.|
T Consensus 26 ~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~ 100 (271)
T 3zyl_A 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (271)
T ss_dssp HHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred chHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 356889999999999999998888888877777666789999999999999999999999999999999875443
No 27
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=95.21 E-value=0.081 Score=53.29 Aligned_cols=78 Identities=18% Similarity=0.105 Sum_probs=67.5
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI 80 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eV 80 (516)
+.++..|.|||+.....|+-..+-+|....+.......+.+++|.+|++..|..|.+-||.|+..|+.-+.+.|-.++
T Consensus 22 ~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l 99 (299)
T 1hx8_A 22 QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYL 99 (299)
T ss_dssp CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 468899999999999899999998888888777677899999999999999999999999999999998765444333
No 28
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=95.16 E-value=0.055 Score=54.94 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=65.0
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV 76 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F 76 (516)
+.++..|-|||+.....|.-..+-+|............+.+++|.+||..+|..+.+-||.++..|+..+.+.|
T Consensus 27 s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~ 100 (310)
T 3zym_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (310)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 56889999999999999999888888877776666678999999999999999999999999999999865443
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.43 E-value=0.26 Score=46.45 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred CcCHH----HHHHHHHHHhcCC----ccHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHH
Q 010150 19 GPDWA----INIELCDVINMDP----GQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEM 89 (516)
Q Consensus 19 ~~Dw~----~ileICD~In~~~----~~akeA~raIrKRL-ks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eL 89 (516)
+.||. .+..|+.+|+..+ ..-.+.+.+|+++| +..|.++...|+..|..|.+..|..|+..+ ..++..|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHH
Confidence 35885 6778888887621 23468899999999 599999999999999999999999887765 4588888
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 90 VKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 90 vklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
.+.++. ....||+.+...|..+...
T Consensus 104 l~~l~d-~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 104 LEKFKE-KKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHGGGC-CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHc
Confidence 887776 3578999999999998754
No 30
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=93.59 E-value=0.56 Score=42.01 Aligned_cols=91 Identities=10% Similarity=0.166 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHh---ccCCC
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSK--NPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIV---KKKPD 98 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~--np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklv---k~k~d 98 (516)
.|-.+..-+-.....+++.+..+.++|... ++...+.-|-|++-++.||-.+...++.. .|-.-|..++ -...+
T Consensus 21 sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~-~F~~~L~~~~~~~~~~~~ 99 (142)
T 2km4_A 21 SISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQD-SFGKVAAEVLGRINQEFP 99 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHH-HHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHHcCC
Confidence 344444445455567999999999999876 78899999999999999996432222221 2322233333 22358
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010150 99 LNVREKILILIDTWQEA 115 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~ 115 (516)
..+++|+..+|..|.+.
T Consensus 100 ~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 100 RDLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 89999999999999886
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.81 E-value=1.1 Score=43.12 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCc---hhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGD---SVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~---~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
....+..|..-|+|+|+.+...+|..|..|+.+++. .|...+ .+.++..|.+++.. .+..||+...+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 446777777888999999999999999999999984 455544 23578888888755 5789999999999999999
Q ss_pred hCCCCCCchHHHHHHHHHHh
Q 010150 116 FGGPRGRYPQYYAAYNELRS 135 (516)
Q Consensus 116 F~~~~~~~~~~~~~Y~~LK~ 135 (516)
++.. .+..|..-.+..|+
T Consensus 222 vG~~--~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 222 FGMN--TFVKTLEHLDNLKR 239 (249)
T ss_dssp HCSG--GGHHHHHHSCHHHH
T ss_pred hCHH--HHHHHHHHHhHHHH
Confidence 9863 35555554455444
No 32
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=90.82 E-value=0.73 Score=45.48 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGP 119 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~ 119 (516)
++++..|.+-|..+++.++++||.+|+-++|-........+- +++++.++++++. .+..|.=+.+.+|...=+...-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCC
Confidence 557788888899999999999999999999998666666665 5799999999965 46678777777777665554433
Q ss_pred CCCchHHHHHHHHHH
Q 010150 120 RGRYPQYYAAYNELR 134 (516)
Q Consensus 120 ~~~~~~~~~~Y~~LK 134 (516)
+..|..+.++...+-
T Consensus 110 ~~~y~Kl~~aL~dli 124 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLL 124 (265)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334555555555543
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.83 E-value=1.8 Score=41.76 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCcCHH----HHHHHHH-HHhcCC------ccHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccC-chhhhhhccHH
Q 010150 18 IGPDWA----INIELCD-VINMDP------GQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCG-DSVFQQIIERD 84 (516)
Q Consensus 18 ~~~Dw~----~ileICD-~In~~~------~~akeA~raIrKRL-ks~np~vql~AL~LLe~lVkNCG-~~Fh~eVask~ 84 (516)
...+|. ...+|.. +++..+ ..-.+.+++|++.| +..|..++..|+..|..+.+..+ ..|...+. ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~ 104 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SL 104 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HH
Confidence 345886 4556666 664311 12268899999999 79999999999999999999888 77762222 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 85 ILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 85 FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
++..|...++.+. ..|++.+...+..|.+...
T Consensus 105 llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 105 VFTPLLDRTKEKK-PSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcc
Confidence 6777777776543 6899999999999999863
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=88.97 E-value=2.2 Score=39.19 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhh----------hcc-HHHH
Q 010150 18 IGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQ----------IIE-RDIL 86 (516)
Q Consensus 18 ~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~e----------Vas-k~FL 86 (516)
++-.-+.|-.|..+.-..-...+-.+..|.+.++.-.+.-=+=+|-|+|..|+||-+.+... ++. -.++
T Consensus 18 p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~ 97 (157)
T 3clj_A 18 SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTL 97 (157)
T ss_dssp SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHH
Confidence 34455666677766655555677789999999987777888889999999999975444220 110 0112
Q ss_pred HHHH-HHhcc---CCCHHHHHHHHHHHHHHHHH--hC
Q 010150 87 HEMV-KIVKK---KPDLNVREKILILIDTWQEA--FG 117 (516)
Q Consensus 87 ~eLv-klvk~---k~d~~Vk~KIL~Ll~~W~~~--F~ 117 (516)
.+++ .++.. ..+...|+||..||..|... |.
T Consensus 98 ~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp 134 (157)
T 3clj_A 98 GEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQ 134 (157)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCC
Confidence 2222 22221 24789999999999999976 54
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.92 E-value=6.8 Score=36.50 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCch--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 38 QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDS--VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 38 ~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~--Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
+....+..|...|+++|+.+...++.+|..|+.++|.. |...+ ..++..|.+++.. ....||+.+.+.|..-...
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999998743 34444 3677777777754 5679999999999887777
Q ss_pred hC
Q 010150 116 FG 117 (516)
Q Consensus 116 F~ 117 (516)
++
T Consensus 207 vg 208 (242)
T 2qk2_A 207 MG 208 (242)
T ss_dssp HC
T ss_pred cC
Confidence 75
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.03 E-value=3 Score=37.98 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=75.5
Q ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhh
Q 010150 3 NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQA-----KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVF 77 (516)
Q Consensus 3 n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~a-----keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh 77 (516)
+.+..+|.-..++. .+.-......|+.+....+... ..++..|.+-|++.++.++..|+..|-.+..+. ....
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHH
Confidence 34566776666553 1111122333444444433222 246888899999999999999999999998765 5667
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 78 QQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 78 ~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
..+.+...+..|+++++. .+..|+..++..|....
T Consensus 80 ~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIA 114 (252)
T ss_dssp HHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 777778899999999985 57899999998887765
No 37
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.39 E-value=4 Score=39.22 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=60.8
Q ss_pred CCCcCHH----HHHHHHHHHhcCCcc-H--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc--
Q 010150 17 LIGPDWA----INIELCDVINMDPGQ-A--------KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII-- 81 (516)
Q Consensus 17 l~~~Dw~----~ileICD~In~~~~~-a--------keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa-- 81 (516)
+..-+|. .+.++..+++..... . ......|+|.|+..|..++..||.+|..+++++|..+...-.
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~ 97 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNI 97 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhH
Confidence 3445785 344555556543221 1 223568999999999999999999999999998764322111
Q ss_pred --cHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 82 --ERDILHEMV-KIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 82 --sk~FL~eLv-klvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
-..++..|+ |++.. ....+|+.++..+..|.+.
T Consensus 98 ~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp HHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHh
Confidence 123444433 32322 4468999999999888754
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.36 E-value=1.9 Score=41.55 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHH----HHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHE----MVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~e----Lvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
...++..|..-++++||++..-+|..|..|+.+.|... +.-+.++.. +.+++. ..+..||+-.+.++..-..
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 35567777788899999999999999999999987532 222444444 444443 4788999999988877665
Q ss_pred HhC
Q 010150 115 AFG 117 (516)
Q Consensus 115 ~F~ 117 (516)
.++
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 443
No 39
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=83.23 E-value=3.1 Score=35.24 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHH
Q 010150 186 EIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLR 259 (516)
Q Consensus 186 eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~ 259 (516)
-++..++.++++.+=+......+.....|..++.||.+.-.|.+++|+||+..+|.-. ..=.+.|.|..+=+
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~--~yE~LQDkL~qi~e 76 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRL--YYEGLQDKLAQIRD 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3667788888887777654444567788999999999999999999999998765432 22234566555433
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=82.92 E-value=4.6 Score=36.17 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.++..|.+-|++.++.++..|+..|-.|..+. ......+.+...+..|++++.. .+..||++++..|...+
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 36788888899999999999999999998864 4566667777899999999885 67899999999887653
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=81.12 E-value=15 Score=33.15 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=70.7
Q ss_pred CcCHHHHHHHHHHHhc---CCccH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHH
Q 010150 19 GPDWAINIELCDVINM---DPGQA------KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEM 89 (516)
Q Consensus 19 ~~Dw~~ileICD~In~---~~~~a------keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eL 89 (516)
.+|+......|..+.. ..... ..++..|.+-|.+.++.++..|+..|-.+.... ......+.+..++..|
T Consensus 139 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L 217 (252)
T 4hxt_A 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVL 217 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 3456655555555442 11111 237788899999999999999999999988743 4555566677899999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 90 VKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 90 vklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
++++.. .+..||+.++..|........
T Consensus 218 ~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 218 QKLLTS-TDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHCC-CcHHHHHHHHHHHHHHHcCCC
Confidence 999875 567999999999988776544
No 42
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=80.96 E-value=8.2 Score=31.40 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 010150 193 LADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAK 266 (516)
Q Consensus 193 n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~ 266 (516)
.++.+-.+|...+|.+......|+ .+|-..|.+|=+-|=.=++.+.-. -.+|=++|..+..+|..|..++.
T Consensus 6 kmd~~L~~l~~aDP~~~~~D~~el-~~LE~~c~~MgplId~kLE~iDrk--h~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQPDLPEL-LHLEAMCHQMGPLIDEKLEDIDRK--HSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677888899998776555665 469999999988775555555421 24566889999999999998763
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=79.92 E-value=6.2 Score=39.17 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCccH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCH
Q 010150 25 NIELCDVINMDPGQA-----KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL 99 (516)
Q Consensus 25 ileICD~In~~~~~a-----keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~ 99 (516)
.-.|+.+++..+.+. ..++..|.+-|++++..++..|..+|-.+..+ +......|.+..++..|+.++... +.
T Consensus 146 ~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d~ 223 (296)
T 1xqr_A 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-HS 223 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-CS
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-Ch
Confidence 344555555443322 23666788888899999999999999999887 456667777889999999999763 67
Q ss_pred HHHHHHHHHHHHHH
Q 010150 100 NVREKILILIDTWQ 113 (516)
Q Consensus 100 ~Vk~KIL~Ll~~W~ 113 (516)
.|++.++..|..-.
T Consensus 224 ~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 224 PFHEHVLGALCSLV 237 (296)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 89999999887654
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=74.84 E-value=14 Score=32.86 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=66.0
Q ss_pred CcCHHHHHHHHHHHh----cCCccHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHH
Q 010150 19 GPDWAINIELCDVIN----MDPGQAK-----DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEM 89 (516)
Q Consensus 19 ~~Dw~~ileICD~In----~~~~~ak-----eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eL 89 (516)
.+|+..-...|..+. .+....+ .++..|.+-|++.++.++..|+..|-.+..+. ......+.+...+..|
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L 101 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPAL 101 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHH
Confidence 456665555554443 2222211 46788899999999999999999999887654 3455566667788999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Q 010150 90 VKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 90 vklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
+++++. .+..|+..++..|..-.
T Consensus 102 ~~lL~~-~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 102 VQLLSS-PNEQILQEALWALSNIA 124 (210)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHHT
T ss_pred HHHHcC-CcHHHHHHHHHHHHHHH
Confidence 999876 36889999888876644
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=74.16 E-value=18 Score=35.93 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC-chhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCG-DSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG-~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
-..++..|...|++.++++..-|+..|-.+...|+ ..+...+ ..++..|+.+++. .+..||..++..|......+.
T Consensus 364 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 35677888889999999999999999999999887 3344443 3577888888865 468999999999999999886
Q ss_pred CCCCCchHHHHHHHHH
Q 010150 118 GPRGRYPQYYAAYNEL 133 (516)
Q Consensus 118 ~~~~~~~~~~~~Y~~L 133 (516)
..-...+.+..++..|
T Consensus 441 ~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGCCSTTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5210123455555544
No 46
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=72.08 E-value=17 Score=37.23 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHH---------HHHHHHHHhc--cCCCHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERD---------ILHEMVKIVK--KKPDLNVREKILILID 110 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~---------FL~eLvklvk--~k~d~~Vk~KIL~Ll~ 110 (516)
.++-|-.-+.+....|...||.||+-+|.++...+..-+..-. .+..|++++. ...|.+++-..+.||.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3444444555678999999999999999998544443222111 3567788886 3468999999999998
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHhcCcC
Q 010150 111 TWQEAFGGPRGRYPQYYAAYNELRSAGVE 139 (516)
Q Consensus 111 ~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~ 139 (516)
..=....+ -..++++-..|..+|++
T Consensus 283 ~lL~~apd----~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 283 KTLAALPD----QDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHCSS----HHHHHHHHHHHHHTTHH
T ss_pred HHHhcCCC----hhHHHHHHHHHHHccHH
Confidence 76554322 23467777778887764
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=71.92 E-value=7.9 Score=38.38 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=59.5
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 42 ALKILKK-RLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 42 A~raIrK-RLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
++..|-+ -|++.++.++..|+..|-.++.|. ...+..|.+...+..|+++++..++..||++++..|-...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5666667 678999999999999999999985 5677788888899999999987667899999988877654
No 48
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=71.70 E-value=16 Score=36.27 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.++..|.+-|++.++.++..|+..|-.+..++ ..+...+.....+..|+++++...+..||..++..|....
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 46777888889999999999999999998875 3455556566788889999986567899998888776655
No 49
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=69.49 E-value=12 Score=34.37 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
.++..|.+-|++.++.++..|+..|-.+.... ......+.+...+..|+++++. .+..|++.++..|..-
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 35667778888999999999999999998754 4566777777899999999987 5789999988887765
No 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=67.29 E-value=23 Score=34.97 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=64.0
Q ss_pred cCHHHHHHHHHHHhcCCc-cHHHH-------HHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---CchhhhhhccHHHHHH
Q 010150 20 PDWAINIELCDVINMDPG-QAKDA-------LKILKKRLGSKNPKVQLLALFALETISKNC---GDSVFQQIIERDILHE 88 (516)
Q Consensus 20 ~Dw~~ileICD~In~~~~-~akeA-------~raIrKRLks~np~vql~AL~LLe~lVkNC---G~~Fh~eVask~FL~e 88 (516)
.||...++-+|.+...-. .++++ .+-+.-|+...|+++.+.+|.+|..++.-. |++|+..-+. .|+--
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~-~~lP~ 136 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS-AFVPY 136 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH-HHHHH
Confidence 488877777776665322 33443 333456888999999999999999987655 3445544332 47766
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 89 MVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 89 Lvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
|+.-+-. ....||+++..++......+
T Consensus 137 LveKlGd-~k~~vR~~~r~il~~l~~v~ 163 (266)
T 2of3_A 137 LLLKTGE-AKDNMRTSVRDIVNVLSDVV 163 (266)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-ChHHHHHHHHHHHHHHHHHC
Confidence 6544432 33589999999998877665
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.32 E-value=18 Score=32.46 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCC
Q 010150 18 IGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP 97 (516)
Q Consensus 18 ~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~ 97 (516)
..+|+..-...|..+..- +..+++..|.+.|.+.++.+...|+..|-.+ | ..+.+..|.+++.. .
T Consensus 91 ~~~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~--------~~~~~~~L~~~l~d-~ 155 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQI--GDERAVEPLIKALKDEDWFVRIAAAFALGEI----G--------DERAVEPLIKALKD-E 155 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C--------CGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C--------CHHHHHHHHHHHcC-C
Confidence 345666655666655432 1235677788888888888888888777554 2 22345555665543 4
Q ss_pred CHHHHHHHHHHHHHH
Q 010150 98 DLNVREKILILIDTW 112 (516)
Q Consensus 98 d~~Vk~KIL~Ll~~W 112 (516)
+..||..++..|..+
T Consensus 156 ~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 156 DGWVRQSAADALGEI 170 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 556666666555544
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=65.64 E-value=26 Score=36.20 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
++..|.+-|++.++.++..|+..|-.+...+ ..+...+.....+..|++++....+..|+..++..|......
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 6777888888999999999999999987764 455666666678889999997667888999888888766543
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.72 E-value=37 Score=30.01 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCH
Q 010150 20 PDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL 99 (516)
Q Consensus 20 ~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~ 99 (516)
+||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|..+ +..+.+..|++++.. .+.
T Consensus 26 ~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d-~~~ 90 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-EDG 90 (201)
T ss_dssp SCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSH
T ss_pred CCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CCH
Confidence 45555555444443311 134566666777777777777666665433 122445555555543 455
Q ss_pred HHHHHHHHHHHHH
Q 010150 100 NVREKILILIDTW 112 (516)
Q Consensus 100 ~Vk~KIL~Ll~~W 112 (516)
.||..++..|...
T Consensus 91 ~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 91 WVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666655555443
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.49 E-value=30 Score=30.59 Aligned_cols=81 Identities=21% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCC
Q 010150 18 IGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP 97 (516)
Q Consensus 18 ~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~ 97 (516)
..+|+..-...|..+..- +..+++..|.+.|++.++.+...|+..|-.+ | +.+.+..|..++.. .
T Consensus 86 ~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~--------~~~~~~~L~~~l~d-~ 150 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQI--GDERAVEPLIKALKDEDWFVRIAAAFALGEI----G--------DERAVEPLIKALKD-E 150 (201)
T ss_dssp TCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----T--------CGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------CHHHHHHHHHHHcC-C
Confidence 346776666666665442 1235777888888999999999888887655 1 24566667777754 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 010150 98 DLNVREKILILIDTWQ 113 (516)
Q Consensus 98 d~~Vk~KIL~Ll~~W~ 113 (516)
+..||..++..|..+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6678877777776663
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=64.42 E-value=14 Score=33.82 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.++..|.+-|++.++.++..|+..|-.|..+.. .....+.+..++..|+.+++. .+..|+..++..|..-.
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 208 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHh
Confidence 367788888899999999999999999987653 344445566889999999976 47899999988887654
No 56
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=64.16 E-value=27 Score=33.83 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhcc---HHHHHHHHHHhc-cCCC
Q 010150 23 AINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIE---RDILHEMVKIVK-KKPD 98 (516)
Q Consensus 23 ~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVas---k~FL~eLvklvk-~k~d 98 (516)
+.+.=||++.+..-...+-+...|++-|.+.+.. .+.+|=.++++||..+...-+. ..++..|..++. .+.+
T Consensus 148 g~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls 223 (260)
T 1hu3_A 148 GNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTS 223 (260)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSC
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCC
Confidence 5555689999987777777777888778877766 4555556666778877653221 346666777664 3567
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 010150 99 LNVREKILILIDTWQEAFG 117 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~F~ 117 (516)
.+||-.|..+++.-...+.
T Consensus 224 ~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 224 SRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 8899999988887655554
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=63.94 E-value=19 Score=36.54 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
++..|.+-|+++++.+|..|...|-.|..+.+......|.+...+..|++++....+..+++.++..|..
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4677888889999999999999999998765456677777778899999987655677898888777643
No 58
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=63.20 E-value=22 Score=34.11 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
++..|.+-|+++++.+|..|...|..|...+ ......|....-+..|+++++...+..|++.+...|....
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999998743 4566777778899999999986667899999887765554
No 59
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=61.17 E-value=35 Score=33.84 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.++..|.+.|++.++.++..|+..|-.+..++.......+.+...+..|+.++.. .+..|++.++..|.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILR 390 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 3556777788889999999999999988877544444445566788889998876 378999999888877654
No 60
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.00 E-value=17 Score=37.63 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.+.+..|.+.|++.++.+++.|+..|..++..........+.....+..|+++++...+..||..++..|....
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45688888999999999999999999888876653444555566888999998876544778877766665544
No 61
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=59.75 E-value=28 Score=34.26 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDIL---HEMVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL---~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
+.-....|..-++|+|.++-.-+|.+|..|+.+.|..+ .+.+ ..+.+++.. .|..||+-++..+-.-...
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 44455666677789999999999999999999999873 2345 777777776 7889999999888866655
Q ss_pred hC
Q 010150 116 FG 117 (516)
Q Consensus 116 F~ 117 (516)
.+
T Consensus 238 ~G 239 (266)
T 2of3_A 238 EG 239 (266)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.52 E-value=43 Score=29.84 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCH
Q 010150 20 PDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL 99 (516)
Q Consensus 20 ~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~ 99 (516)
+||..-...+..+..- +..+++..|.+.|++.++.+...|+..|-.+ ++.+.+..|++++.. .+.
T Consensus 31 ~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~~ 95 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKI--GDERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-EDG 95 (211)
T ss_dssp SSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CCH
Confidence 4555555555544431 1135667777777777777777777666443 123456666666654 466
Q ss_pred HHHHHHHHHHHHH
Q 010150 100 NVREKILILIDTW 112 (516)
Q Consensus 100 ~Vk~KIL~Ll~~W 112 (516)
.||..++..|...
T Consensus 96 ~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 96 WVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766543
No 63
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=58.08 E-value=31 Score=35.43 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
...+..|.+.++..++.+...++..|..+++.+|..|.. ..|+..|.+++. ..+..||..+...+...
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~-d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence 456777888889999999999999999999999876543 456666777654 36789999988887654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=57.50 E-value=38 Score=36.77 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
.+.|+..|.+-|.++++++++.||..|..++...+. +..| .++...+..+++...|..||.+.|+++..
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 467888899889999999999999999988876541 1111 12333344444423445555555555443
No 65
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=57.02 E-value=29 Score=35.99 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=66.2
Q ss_pred cCHHHHHHHHHHHhc----CCccHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCc--hhhhhhccHHHHHH
Q 010150 20 PDWAINIELCDVINM----DPGQAK-----DALKILKKRLGSKNPKVQLLALFALETISKNCGD--SVFQQIIERDILHE 88 (516)
Q Consensus 20 ~Dw~~ileICD~In~----~~~~ak-----eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~--~Fh~eVask~FL~e 88 (516)
.+|..-.+.|-.|.. .....+ .++..|.+-|.+.++.++..|+..|-.|...++. .....+.....+..
T Consensus 353 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~ 432 (530)
T 1wa5_B 353 PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 432 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHH
Confidence 466665555555543 111111 2445666777788999999999999999988765 45555556678888
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH
Q 010150 89 MVKIVKKKPDLNVREKILILIDTWQEA 115 (516)
Q Consensus 89 Lvklvk~k~d~~Vk~KIL~Ll~~W~~~ 115 (516)
|+.++.. .+..|+..++..|..+...
T Consensus 433 L~~ll~~-~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 433 LCDLLEI-ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHTTT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHHh
Confidence 8988876 4789999999888776644
No 66
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=56.91 E-value=33 Score=37.03 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=39.0
Q ss_pred cCHHHHHHHHHHHhcCCccH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh
Q 010150 20 PDWAINIELCDVINMDPGQA---KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV 76 (516)
Q Consensus 20 ~Dw~~ileICD~In~~~~~a---keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F 76 (516)
.+.+...+.+..|-.-...+ ..|+..|.+-|.++++++++.||..|..++......|
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH
Confidence 34456666665554322112 3478888888999999999999999998887654433
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=56.68 E-value=46 Score=27.73 Aligned_cols=75 Identities=23% Similarity=0.143 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCH
Q 010150 20 PDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL 99 (516)
Q Consensus 20 ~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~ 99 (516)
+||..-...|..+..- +..+++..|.+.|++.++.|...|+..|..+ ++.+.+..|+++++. .+.
T Consensus 54 ~~~~vR~~A~~aL~~~--~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d-~~~ 118 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNF--QDERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAET-GTG 118 (131)
T ss_dssp SCHHHHHHHHHHHGGG--CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH------------CSHHHHHHHHHHTTS-CCT
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CcHHHHHHHHHHHhC-CCH
Confidence 4666555555555442 2356677777777777888777777666543 234566777777753 456
Q ss_pred HHHHHHHHHH
Q 010150 100 NVREKILILI 109 (516)
Q Consensus 100 ~Vk~KIL~Ll 109 (516)
.||..+...|
T Consensus 119 ~vr~~A~~aL 128 (131)
T 1te4_A 119 FARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 68
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=56.47 E-value=27 Score=37.75 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHH
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVRE 103 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~ 103 (516)
..+.++.+.+.+++-..-++..|+|-|+++|+.+..+||..|-.+. +. +++ +.++..+.++++. .++.||+
T Consensus 90 ~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~----~~~-~~l~~~l~~~L~~-~~~~VRk 160 (618)
T 1w63_A 90 GYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SS----EMC-RDLAGEVEKLLKT-SNSYLRK 160 (618)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CH----HHH-HHHHHHHHHHHHS-CCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CH----HHH-HHHHHHHHHHHcC-CCHHHHH
Confidence 3456666666665556778999999999999999999988876542 11 222 3556667777665 5678888
Q ss_pred HHHHHHHHHHH
Q 010150 104 KILILIDTWQE 114 (516)
Q Consensus 104 KIL~Ll~~W~~ 114 (516)
+++..+.....
T Consensus 161 ~A~~al~~l~~ 171 (618)
T 1w63_A 161 KAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777655543
No 69
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=56.08 E-value=84 Score=34.13 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC-chhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCG-DSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG-~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
-...+..|...|++.++++...|+..|-.+...|+ ..+...+ ..++..|.+.++. .+..||..++..|..|...+.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCc
Confidence 45677788888999999999999999999999887 3343322 3456666666654 567999999999999998875
Q ss_pred C
Q 010150 118 G 118 (516)
Q Consensus 118 ~ 118 (516)
.
T Consensus 441 ~ 441 (876)
T 1qgr_A 441 E 441 (876)
T ss_dssp G
T ss_pred h
Confidence 3
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=55.42 E-value=42 Score=34.17 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
++..|.+.|++.++.++..|+..|-.|..+.. .....+.+...+..|+++++. .+..|+..+...|..|..
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 56677778889999999999999998887643 335556667889999999976 467888888888888863
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=54.97 E-value=32 Score=38.27 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.....+..|+++++. .+..|+..++..|..|..
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 56667777888999999999999999887753 445555566788899999976 567899999999998874
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=53.87 E-value=55 Score=35.49 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCC
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKK-PDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k-~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
...+..|.+.|++.++.+...|+.++..+++.||..|...+ ..++..|.+.+... .+..||..++..+..-...++.
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 45677788888888889999999999999999998765443 35666666766543 4578999999999888888764
No 73
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=53.20 E-value=98 Score=34.12 Aligned_cols=72 Identities=22% Similarity=0.139 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 38 QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 38 ~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
.-..++..|.+.|+..++.++..|+..|..++++||..+...+ ..++..|.++++.. .......+++.|..-
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTL 510 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999998765543 46777777777642 333333334444333
No 74
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=52.51 E-value=23 Score=38.68 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
++..|.+-|++.++.+|..|...|-.|...++......|.+..-+..|+++++...+..|++.+...|..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~n 160 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN 160 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4667788889999999999999999998865567788888888999999999875566677766544433
No 75
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=52.05 E-value=49 Score=33.59 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
..++..|.+.|++.++.++..|+..|-.+..+.. .....+.....+..|++++....+..|+..++..|...
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4568888888999999999999999999987653 22333445678889999987766888998888887764
No 76
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=51.91 E-value=43 Score=33.16 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcc-CchhhhhhccHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSK--NPKVQLLALFALETISKNC-GDSVFQQIIERDILHEMVKIVKKKP-DLNVREKILILIDTWQE 114 (516)
Q Consensus 40 keA~raIrKRLks~--np~vql~AL~LLe~lVkNC-G~~Fh~eVask~FL~eLvklvk~k~-d~~Vk~KIL~Ll~~W~~ 114 (516)
.+.+..|...+.+. ++.+...||.+|..+++.+ +..+...+ ..++..+.+++.... +..||..++..+..|..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46777888888888 9999999999999999987 43333222 247777777776543 68999999988887643
No 77
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=50.90 E-value=49 Score=35.43 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
..++..|.+.|++.++.++..|+..|-.|..+.. .....+.....+..|++++....+..|+..++..|...
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3457788888899999999999999999988764 33333445678899999988766788888888777653
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=50.22 E-value=36 Score=35.85 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
++..|.+-|+++++.++..|...|-.|..+.+......|.+...+..|++++....+..|++.++..|....
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 477788888999999999999999998765445566777777889999998765567889988887764443
No 79
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=49.65 E-value=47 Score=35.60 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++.. +..++..++..|..|..
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh
Confidence 55667777888999999999999999887753 4455566678999999999864 56788888888887773
No 80
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=47.94 E-value=41 Score=36.87 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC-chhhhhhcc----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCG-DSVFQQIIE----RDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG-~~Fh~eVas----k~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
.+.+..|..-|++....++..+|.||+.++++-+ ..++....+ ..+.+.|++++.-.+...+|++.+.+++.-=.
T Consensus 316 ~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~ 395 (596)
T 4f52_E 316 QFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYIN 395 (596)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 3446678888889999999999999999888764 344444433 45667788877777889999999999999888
Q ss_pred HhCCCCCCchHHHHHHHHH
Q 010150 115 AFGGPRGRYPQYYAAYNEL 133 (516)
Q Consensus 115 ~F~~~~~~~~~~~~~Y~~L 133 (516)
.|... +||..+..+.+..
T Consensus 396 ~~~~e-~R~~iL~~LL~~~ 413 (596)
T 4f52_E 396 KLDSQ-GKYTLFRCLLNTS 413 (596)
T ss_dssp HBCHH-HHHHHHHHHHHHH
T ss_pred hCChH-HHHHHHHHHHhcC
Confidence 88754 5777776665443
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=47.73 E-value=15 Score=37.78 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=45.0
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNC 72 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNC 72 (516)
.++..|.+|-.+..+----..++-+..++...++-.+.-+..++.-|..+|+-||+.||.+|-.+-++-
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 445555566555444333344555555565555555555666777778899999999999998887754
No 82
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=47.53 E-value=1.3e+02 Score=32.47 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC-chhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCG-DSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG-~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
-...+..|...|.+.++++...|+..|-.+++.|+ ..+...+ ..++..|.+.++. .+..||..++..|..+...+.
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMND-QSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhh
Confidence 45677788888889999999999999999999887 4443322 2455666666554 478999999999999988875
No 83
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=46.51 E-value=33 Score=35.61 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
...+..|.+.|++.++.++..|+..|..++...+..-...+....++..|+.++....+..||..++..|...
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4557788888888899999999998888766432222234445578888888887655677887777666543
No 84
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=46.47 E-value=60 Score=36.08 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
+..++..|.+-|.+.++.++..|+..|-.|.++.. .-+..+....++..|+++++...+..||..++..|...
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35678888888889999999999999999888653 23344445689999999998666888998888877664
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=46.44 E-value=51 Score=33.94 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.++..|.+-|++.++.+|..|...|-.|... .......|.+..-+..|+++++...+..|++.+...|....
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa 115 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHh
Confidence 4567788889999999999999999999874 35667777777889999999986678899998887766555
No 86
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=45.98 E-value=91 Score=31.87 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
...+-.|.+-+++.+.++...++..|..+.+.+|..|. ...++..|.+++.. .+..||+.++..+......|+.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF----DEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC----CHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc
Confidence 34555666667788888888888888888888876542 34567777777655 4578999999999888888763
No 87
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=45.64 E-value=81 Score=34.80 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
..+..|.+.+.++++.+..-|+.+|..|++.||..|...+. .|+.-|.+.+.. .+..||.-+...|......++.
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP-EFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhH
Confidence 45778888899999999999999999999999988777654 477777777743 4678999999888888887753
No 88
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=45.34 E-value=59 Score=33.96 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILID 110 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~ 110 (516)
.+..|.+.|++.++.+|+.|+.-+..|..+....-..+|.+...+..|+++++...+..++..+...|.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ 145 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 145 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 355566666777777777777666655433322223334445666777777765444555554444333
No 89
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=43.87 E-value=49 Score=35.28 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCccHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC
Q 010150 23 AINIELCDVINMDPGQAK--DALKILKKRLGSKNPKVQLLALFALETISKNCG 73 (516)
Q Consensus 23 ~~ileICD~In~~~~~ak--eA~raIrKRLks~np~vql~AL~LLe~lVkNCG 73 (516)
..++.+..+.+..++... ..+..|.+.|.+.++.|+..|+.+|..+.++.+
T Consensus 140 ~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 140 TAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 456666677776666554 477889999999999999999999988877654
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=43.34 E-value=74 Score=35.33 Aligned_cols=107 Identities=12% Similarity=0.198 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc-cHHHHHHHHHHhccCCCHHHHHH
Q 010150 26 IELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII-ERDILHEMVKIVKKKPDLNVREK 104 (516)
Q Consensus 26 leICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa-sk~FL~eLvklvk~k~d~~Vk~K 104 (516)
+.++|.+-.+ .+.+..|-.-|+..+.++-++||.+|..|..|.+.+++..|- ...=+..|+.+++.. ...||..
T Consensus 111 ~~~~d~f~~~----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRne 185 (651)
T 3grl_A 111 SQFTEIFIKQ----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRND 185 (651)
T ss_dssp HHHHHHHHHS----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHH
T ss_pred HHHHHHHHcC----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHH
Confidence 3444544333 355777788889999999999999999999999998998887 346777888888764 4689999
Q ss_pred HHHHHHHHHHHhCCCCCCc----hHHHHHHHHHHhcCc
Q 010150 105 ILILIDTWQEAFGGPRGRY----PQYYAAYNELRSAGV 138 (516)
Q Consensus 105 IL~Ll~~W~~~F~~~~~~~----~~~~~~Y~~LK~~Gv 138 (516)
.+.+|......=..-. +. -.|-.+++-++.+|.
T Consensus 186 allLL~~Lt~~n~~iQ-klVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 186 GVLLLQALTRSNGAIQ-KIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHTTCHHHH-HHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHhcCCHHHH-HHHHHhccHHHHHHHHHhcCC
Confidence 9988887764210000 00 124555666677775
No 91
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=42.93 E-value=41 Score=35.94 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010150 27 ELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFAL 65 (516)
Q Consensus 27 eICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LL 65 (516)
.+..+.+..++....++..|+|-|++.|+.+...||.-|
T Consensus 72 ~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L 110 (591)
T 2vgl_B 72 YLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTM 110 (591)
T ss_dssp HHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHH
T ss_pred HHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 333344444444455677788888888888777776433
No 92
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=42.38 E-value=1e+02 Score=30.13 Aligned_cols=86 Identities=8% Similarity=0.106 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhccCchhhhhhc------------cHHHHH
Q 010150 24 INIELCDVINMDPGQAKDALKILKKRLG----SKNPKVQLLALFALETISKNCGDSVFQQII------------ERDILH 87 (516)
Q Consensus 24 ~ileICD~In~~~~~akeA~raIrKRLk----s~np~vql~AL~LLe~lVkNCG~~Fh~eVa------------sk~FL~ 87 (516)
.+.=||++.+..-...+-+..+|++-|+ ..+.. .|..|=.++++||..+...-. =..+++
T Consensus 176 ~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~ 251 (284)
T 2vso_E 176 LVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFG 251 (284)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHH
Confidence 3455889998876666666666666564 45555 455555566667877654321 124555
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHHH
Q 010150 88 EMVKIVK-KKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 88 eLvklvk-~k~d~~Vk~KIL~Ll~~W~ 113 (516)
.|.+++. .+.+.+||-.|..+|+.-.
T Consensus 252 ~l~~l~~~~~ls~RirFml~dlidLR~ 278 (284)
T 2vso_E 252 ILDNIIQTAKISSRIKFKLIDIKELRH 278 (284)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 5666664 3567899998888887543
No 93
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=40.97 E-value=58 Score=31.11 Aligned_cols=70 Identities=7% Similarity=-0.013 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCCH--HHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 43 LKILKKRLGSKNP--KVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 43 ~raIrKRLks~np--~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
+..|.+.|.+.++ .+|..|...|-.+..+. ......|....-+..|+.+++. .+..||+.....|..++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 5567778888887 88888877776665543 3556677777888999999976 578999999999888863
No 94
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.82 E-value=1.4e+02 Score=29.98 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=51.5
Q ss_pred hCCCC-HHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhCCCCCCchHHH
Q 010150 50 LGSKN-PKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL-NVREKILILIDTWQEAFGGPRGRYPQYY 127 (516)
Q Consensus 50 Lks~n-p~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~-~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~ 127 (516)
|+++. ....-+|+.++|.+.++. ..+ +.+.+++|+.|++.-++. .-|.+.+.-...|...+++.....+.++
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~-~~~-----~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH 137 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAE-VKV-----DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLH 137 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT-CCC-----SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 34443 444557888889988863 232 567889999998763322 3478899999999999976433456665
Q ss_pred HHHHH
Q 010150 128 AAYNE 132 (516)
Q Consensus 128 ~~Y~~ 132 (516)
.+.-.
T Consensus 138 ~~~a~ 142 (312)
T 2wpv_A 138 NTIGS 142 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 95
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=40.45 E-value=49 Score=34.12 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
+..|.+.|++.++.+|..|+..|..+..+- ......|.....+..|+++++. .+..|+......|..+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 456777888899999999999998876543 3456677788899999999985 577899888888877763
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=40.24 E-value=87 Score=32.00 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=99.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCC
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPR 120 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~ 120 (516)
+.+..|-+-+.....+.|-++|+-|-.||..- .-+..-|....|+..|..++.. .+..|.+..|++|...-+.-.
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se--- 234 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSE--- 234 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCG---
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCc---
Confidence 34455555566789999999999999999873 2344455578999999999985 678999999999988775532
Q ss_pred CCchHHHHHHHHHHh-cCcCCCCCCCCCCCCCCCCCCCCCCCCCcccchHHHhhhcccccccCCHHHHHHHHHHHHHHHH
Q 010150 121 GRYPQYYAAYNELRS-AGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLME 199 (516)
Q Consensus 121 ~~~~~~~~~Y~~LK~-~Gv~FP~~~~~s~Pi~tPp~t~~~~~~p~~~~~a~iq~~lq~e~~~~sl~eLe~a~~n~~LL~E 199 (516)
..+..+.++...... .|.. | ++ .+...++ ++-. .+.+...+.+.|+|.
T Consensus 235 ~~~~lv~~av~~v~~~~~~~---------p----------------~~--~Lv~~L~-~~~~---~D~elq~~amtLIN~ 283 (339)
T 3dad_A 235 NNAPLFIRAVNSVASTTGAP---------P----------------WA--NLVSILE-EKNG---ADPELLVYTVTLINK 283 (339)
T ss_dssp GGHHHHHHHHHHHHHHHCCC---------T----------------TH--HHHHHHT-TTTS---CCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhhccCCC---------c----------------HH--HHHHHHh-ccCC---CCHHHHHHHHHHHHH
Confidence 235555555543311 1110 0 00 0111111 0111 234455578999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc-CCHHHHHHH
Q 010150 200 MLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNT-ADEELLCQG 247 (516)
Q Consensus 200 ML~~~~P~~~~~~~dEli~EL~~qCr~~q~rI~rLI~~v-~DEelL~~L 247 (516)
+|.... + .+. -.+ +.+..+ .+.++..|++++... +|-++..+|
T Consensus 284 lL~~ap-d-~d~-~~d-i~d~Le-~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 284 TLAALP-D-QDS-FYD-VTDALE-QQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHCS-S-HHH-HHH-HHHHHH-HTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHhcCC-C-hhH-HHH-HHHHHH-HccHHHHHHHHHhccCCCHHHHHHH
Confidence 998862 1 110 112 222222 235777888888776 466655544
No 97
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=39.10 E-value=1.5e+02 Score=32.04 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCcCHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchh-hhhhccHHHHH
Q 010150 18 IGPDWAINIELCDVINMDPG---------QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSV-FQQIIERDILH 87 (516)
Q Consensus 18 ~~~Dw~~ileICD~In~~~~---------~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~F-h~eVask~FL~ 87 (516)
..++|..-...|..+..=.. .-..++..|.+-|++.++.+...|+..|..+.+.++..+ +..+. ..++.
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~ 454 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQ 454 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHH
Confidence 34678765555555532111 124567788888999999999999999999999987654 22222 35667
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 010150 88 EMVKIVKKKPDLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 88 eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
.|.+.+.. +..||..++..|......++
T Consensus 455 ~l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 455 CLIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 77777655 37899999999988888764
No 98
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.67 E-value=60 Score=30.27 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 41 DALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 41 eA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
+++..|.+.|++.++.+...|+..|..+ ++.+.+..|.++++.. .||..+...|..
T Consensus 192 ~~~~~L~~~l~d~~~~vR~~A~~aL~~~------------~~~~~~~~L~~~l~d~---~vr~~a~~aL~~ 247 (280)
T 1oyz_A 192 DIRDCFVEMLQDKNEEVRIEAIIGLSYR------------KDKRVLSVLCDELKKN---TVYDDIIEAAGE 247 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHT------------TCGGGHHHHHHHHTSS---SCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh------------CCHhhHHHHHHHhcCc---cHHHHHHHHHHh
Confidence 3444444444444455444444433221 2345566666666541 266655555543
No 99
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=37.53 E-value=1.2e+02 Score=31.57 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
++..|.+-|++++..++..|...|-.+..+|.......+.+...+.-|+.+++. .|..|+..+|..|..-
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 456677778899999999999999888887765555556677888889998876 5788888888776544
No 100
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.93 E-value=1.4e+02 Score=27.72 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDT 111 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~ 111 (516)
..+++..|.+.|++.++.+...|+..|-. .| +.+.+..|+++++. .+..||..++..|..
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~----~~--------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAISV----IN--------DKATIPLLINLLKD-PNGDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHT----C-----------CCHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHh----cC--------CHHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 34555566666666666666666555432 22 12345555555543 445666666665543
No 101
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=35.57 E-value=77 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC
Q 010150 97 PDLNVREKILILIDTWQEAFGG 118 (516)
Q Consensus 97 ~d~~Vk~KIL~Ll~~W~~~F~~ 118 (516)
.+..|+..+..||..|......
T Consensus 67 ~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 67 SDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998865
No 102
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=35.38 E-value=1.1e+02 Score=33.08 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHHHHhcCCc-cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc--CCCHHHHH
Q 010150 27 ELCDVINMDPG-QAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK--KPDLNVRE 103 (516)
Q Consensus 27 eICD~In~~~~-~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~--k~d~~Vk~ 103 (516)
|.|+.+...+. .+.+.++.|.+++..-++.++..+|+.+--+...+++ + .+.+..+.+.... ..+.+||+
T Consensus 506 Ey~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~--~~~i~~~l~~~~~~~~~d~evrd 578 (621)
T 2vgl_A 506 EFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----V--KATIQDVLRSDSQLKNADVELQQ 578 (621)
T ss_dssp HHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----G--HHHHHHHHSSHHHHSCSSHHHHH
T ss_pred chHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-----H--HHHHHHHHHHHhcCCCCCHHHHH
Confidence 56677765432 3678899999999999999999998887776555432 1 1222222222233 57889999
Q ss_pred HHHHHHHHH
Q 010150 104 KILILIDTW 112 (516)
Q Consensus 104 KIL~Ll~~W 112 (516)
|..++..-.
T Consensus 579 RA~~y~~Ll 587 (621)
T 2vgl_A 579 RAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876554
No 103
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=35.02 E-value=3.8e+02 Score=28.10 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=52.7
Q ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCC-----------------------------
Q 010150 4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKN----------------------------- 54 (516)
Q Consensus 4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~n----------------------------- 54 (516)
.+++||++.|++... |-..+-.+--.- .....+.+.+..|..|.....
T Consensus 46 TL~~LVe~Lt~~~~~--D~~f~~~FLlTy-RsF~tp~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 122 (490)
T 2ii0_A 46 TVIKLIERLTYHMYA--DPNFVRTFLTTY-RSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEY 122 (490)
T ss_dssp CHHHHHHHHTCSSSC--CHHHHHHHHHHG-GGTSCHHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHT
T ss_pred CHHHHHHHHccCCCC--CHHHHHHHHHHH-HhhCCHHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhh
Confidence 578999999997544 433222221111 233457777777777765421
Q ss_pred -HHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc
Q 010150 55 -PKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK 95 (516)
Q Consensus 55 -p~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~ 95 (516)
..+|++-+.+|..-|.+|...|.. +.+++..|...+..
T Consensus 123 ~~~iq~rV~~vl~~Wv~~~~~DF~~---d~~ll~~L~~F~~~ 161 (490)
T 2ii0_A 123 IQPVQLRVLNVCRHWVEHHFYDFER---DAYLLQRMEEFIGT 161 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHCTHHHHH---CHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHhCcccccc---CHHHHHHHHHHHHh
Confidence 246788888888888888765543 34566666655543
No 104
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=34.96 E-value=92 Score=30.71 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 39 AKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 39 akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
.+.++..|-.=|+++|.+++..||++|-.+..-.|+.=|. +..++++..+++.. |+.|++++|..+..-
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~----~~I~~eI~elL~~e-D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL----TLILDEIPSLLQND-NEFIVELALDVLEKA 216 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 5677777777788999999999999887765544433222 35677788888876 999999999988764
No 105
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=34.34 E-value=1.1e+02 Score=31.79 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCc-cHHHHHHHHHHHhC
Q 010150 25 NIELCDVINMDPG-QAKDALKILKKRLG 51 (516)
Q Consensus 25 ileICD~In~~~~-~akeA~raIrKRLk 51 (516)
+.+|+..|+++.. ...+|++++||-|.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls 86 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLS 86 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 5666666765443 34667777777663
No 106
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=33.94 E-value=2.2e+02 Score=32.85 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 010150 39 AKDALKILKKRLG-SKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAF 116 (516)
Q Consensus 39 akeA~raIrKRLk-s~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F 116 (516)
..+.+..|.+-|. +.++.++..||..|-.+++.+|..|...+ ..++..|..++.. .+..||++++..|.......
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhc
Confidence 4677777888887 68899999999999999998887665433 4567776666654 46789999888887766544
No 107
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=32.28 E-value=1.6e+02 Score=30.60 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
++..|..-|.+++..++..|...|-.|+.+|...-...+.+...+.-|+.++.. .|..|+..+|..|..--
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 455667778899999999999888888777655444556667788889999876 57788888777665543
No 108
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=31.47 E-value=1.4e+02 Score=34.41 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhC
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP-DLNVREKILILIDTWQEAFG 117 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~-d~~Vk~KIL~Ll~~W~~~F~ 117 (516)
.+.+|.+.|++.++++...++.+|..+++.|+..+...+ ..++..+.++++.+. ...|+..++..+..|...++
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~ 509 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS 509 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC
Confidence 445667778999999999999999999999876554332 467777777776543 46899999999998876543
No 109
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=31.06 E-value=1.5e+02 Score=24.41 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010150 43 LKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTW 112 (516)
Q Consensus 43 ~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W 112 (516)
+..|.+.|++.++.+...|+..|-.+ ++.+.+..|+++++. .+..||..+...|...
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~------------~~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNF------------QDERAVEPLIKLLED-DSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG------------CSHHHHHHHHHHHHH-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 57888889999999999998876432 235667778888765 5678999888877654
No 110
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.77 E-value=53 Score=28.18 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCc
Q 010150 97 PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGV 138 (516)
Q Consensus 97 ~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv 138 (516)
.+..+++++..+|..|.+.-+.. ..+..+++-|++-|.
T Consensus 59 ~p~dl~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 59 HPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (115)
T ss_dssp CTTCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 33479999999999999987532 346677777877664
No 111
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=30.34 E-value=1.1e+02 Score=33.25 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQ 113 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~ 113 (516)
..++..|.+.|.+.++.+|..|...|-.+.... ......|....-+..|+++++. .+..|++.....|..++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 446788888999999999999988887766543 3456677777888899999976 56788888888887765
No 112
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.71 E-value=60 Score=27.79 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCc
Q 010150 65 LETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGV 138 (516)
Q Consensus 65 Le~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv 138 (516)
|+.+.+|-|..-....-.-.|-+.=+..++......+++++..+|..|.+.-+.. ..+..+++-|++-|.
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 3444566664322222222344443333332233479999999999999987532 336677777777653
No 113
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=29.33 E-value=79 Score=27.40 Aligned_cols=67 Identities=16% Similarity=0.322 Sum_probs=38.4
Q ss_pred HHHHHhccCchhhhhhccH-HHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 65 LETISKNCGDSVFQQIIER-DILHE-MVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 65 Le~lVkNCG~~Fh~eVask-~FL~e-Lvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
++.+.++.|.. -..++.+ .|-+. |..|-...+ ..+++++..||..|...-+.. ..+..+++-|++-|
T Consensus 9 f~~Ia~~lG~~-Wk~LAR~LGlse~dId~Ie~~~p-~dl~eq~~~mL~~W~~r~G~~----ATv~~L~~AL~~i~ 77 (122)
T 3ezq_B 9 FNVICDNVGKD-WRRLARQLKVSDTKIDSIEDRYP-RNLTERVRESLRIWKNTEKEN----ATVAHLVGALRSCQ 77 (122)
T ss_dssp HHHHHTTCCTT-HHHHHHHTTCCHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHCTTT----CCHHHHHHHHHHTT
T ss_pred HHHHHHhhhhh-HHHHHHHhCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHCC
Confidence 44555666633 2233322 34433 333333332 259999999999999886643 34666676676543
No 114
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=28.75 E-value=39 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 99 LNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 99 ~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
..+++++..||..|....+. -..+..+++-|+.-|
T Consensus 51 ~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 51 RSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCR 85 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCC
Confidence 36999999999999998753 234667777776654
No 115
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=26.01 E-value=62 Score=28.53 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCccH---HHHHHHHHHHhCC----CCHHHHHH-----HHHHHHHHHhccCchhhhh
Q 010150 25 NIELCDVINMDPGQA---KDALKILKKRLGS----KNPKVQLL-----ALFALETISKNCGDSVFQQ 79 (516)
Q Consensus 25 ileICD~In~~~~~a---keA~raIrKRLks----~np~vql~-----AL~LLe~lVkNCG~~Fh~e 79 (516)
..++.+.++..+... .++++.+.++|+. +....|+. ++..|..||..|..+|..+
T Consensus 56 ~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee 122 (136)
T 3ayh_A 56 QFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEE 122 (136)
T ss_dssp HHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTT
T ss_pred HHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHH
Confidence 346888888876544 8999999999973 34444543 4466888999998888754
No 116
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=25.14 E-value=91 Score=34.77 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Q 010150 40 KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK-KPDLNVREKILILIDTWQ 113 (516)
Q Consensus 40 keA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~-k~d~~Vk~KIL~Ll~~W~ 113 (516)
..++..|-..|++ +.++..|...|..+++.|+..|...+ ..+++.|..++.+ ..+..++..+++.|..-.
T Consensus 528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 4455566666654 88999999999999999987766443 4577777777654 235556665555554443
No 117
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=24.60 E-value=1.3e+02 Score=30.19 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQE 114 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~ 114 (516)
++..|.+.|++++..++..|...|-.|...+ ......|.+...+.-|+.++.. .+..||+.+...|.....
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHc
Confidence 5677888889999999999999998887533 3556667777888999999876 367889888888776553
No 118
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.60 E-value=1.5e+02 Score=33.29 Aligned_cols=85 Identities=12% Similarity=0.239 Sum_probs=58.3
Q ss_pred HHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhcc-CCCHHHHHHHH
Q 010150 28 LCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK-KPDLNVREKIL 106 (516)
Q Consensus 28 ICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~-k~d~~Vk~KIL 106 (516)
+|+.+...+..-..++..|-+.| + +.++..|-..+..+++.|+..+...+ ..+++.|..++.+ ..+..++..++
T Consensus 533 ~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 533 YCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp THHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHH
Confidence 44444444445667777777777 2 77889999999999999987765544 4677777777764 35677888888
Q ss_pred HHHHHHHHHhC
Q 010150 107 ILIDTWQEAFG 117 (516)
Q Consensus 107 ~Ll~~W~~~F~ 117 (516)
+.|..-.....
T Consensus 608 ~ai~~i~~~~~ 618 (971)
T 2x1g_F 608 FSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 87777766553
No 119
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=24.33 E-value=33 Score=27.15 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 010150 214 QEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAK 266 (516)
Q Consensus 214 dEli~EL~~qCr~~q~rI~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~ 266 (516)
+--+.||+...+..|..+.+ .++-+|-++|.+|++ |.++++|+.-|.+...
T Consensus 13 ~~elEel~sSLK~iq~~L~D-sQSQeDi~lllqL~~-~~DFQ~A~kIhNaVs~ 63 (72)
T 1vf6_C 13 DPDVEDLFSSLKHIQHTLVD-SQSQEDISLLLQLVQ-NRDFQNAFKIHNAVTV 63 (72)
T ss_dssp CHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 44567888888876655432 233456677777765 8889999999998754
No 120
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=23.63 E-value=1.4e+02 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-------CCHHHHHHHhhhhHHHHHHHH
Q 010150 213 KQEIIVDLVDQCRSYQKRVMLLVNNT-------ADEELLCQGLALNDNLQRVLR 259 (516)
Q Consensus 213 ~dEli~EL~~qCr~~q~rI~rLI~~v-------~DEelL~~LL~lNDeL~~aL~ 259 (516)
+-+....|+..++.+...+-+||+.. .|.+.-..|.+++++|..+-.
T Consensus 69 Dp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~ 122 (131)
T 2l7a_A 69 DLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATN 122 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999863 478888999999999986654
No 121
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.13 E-value=1.3e+02 Score=34.24 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHH
Q 010150 42 ALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKK--PDLNVREKILILIDT 111 (516)
Q Consensus 42 A~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask~FL~eLvklvk~k--~d~~Vk~KIL~Ll~~ 111 (516)
++..|..-|.+++..+|..|+..|-.++.. +......|.+...+.-|..+++.. .+.+|.+.+++.|..
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 344666667899999999999999999884 455677778888999999998754 356666655554443
No 122
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=22.95 E-value=1.8e+02 Score=33.18 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=36.0
Q ss_pred cCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhh
Q 010150 34 MDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVF 77 (516)
Q Consensus 34 ~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh 77 (516)
..+..-..++..|-..|.+.++.|+..|-..|..+++.|+..|.
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~ 576 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444567788888889999999999999999999999987653
No 123
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=22.25 E-value=3e+02 Score=27.49 Aligned_cols=103 Identities=9% Similarity=0.066 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhC------C--CCHHHHHHHHHHHHHH--HhccCchhhhhh-----ccHHHHH
Q 010150 23 AINIELCDVINMDPGQAKDALKILKKRLG------S--KNPKVQLLALFALETI--SKNCGDSVFQQI-----IERDILH 87 (516)
Q Consensus 23 ~~ileICD~In~~~~~akeA~raIrKRLk------s--~np~vql~AL~LLe~l--VkNCG~~Fh~eV-----ask~FL~ 87 (516)
+...++|..+|.+.....+|.+..++=-. + ......+.|= |--+| +++.+-.+-+.. .=.+|++
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~ac-LY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~ 82 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFFN 82 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHH-HHHHHHHHTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHh-HHHHhhccCCCcCcHHHHHHHcCCCHHHHHH
Confidence 45678999999998878888888776222 1 1233333333 33333 333223333222 2247888
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 010150 88 EMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNEL 133 (516)
Q Consensus 88 eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~L 133 (516)
+|.++ . ....++++|-+|-......+. -|.+|..+|+.|
T Consensus 83 k~~~~-d--~~~~~~~~i~~Le~~f~v~~~----l~kky~~if~~i 121 (304)
T 2qdj_A 83 LLKEI-D--TSTKVDNAMSRLLKKYDVLFA----LFSKLERTCELI 121 (304)
T ss_dssp HHTTS-C--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHc-C--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 88883 2 677888887777665555543 256667777666
No 124
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.76 E-value=47 Score=28.39 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHhccCchhhhhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcC
Q 010150 63 FALETISKNCGDSVFQQIIER-DILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG 137 (516)
Q Consensus 63 ~LLe~lVkNCG~~Fh~eVask-~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~G 137 (516)
..|..+.++-|... ..++.+ .|-+.=+..++......+++.+..||..|...-++. -..+..+++-|++-|
T Consensus 14 ~~l~~ia~~lg~dW-k~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~---~Atv~~L~~aL~~~~ 85 (118)
T 2of5_H 14 SNLLSVAGRLGLDW-PAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQ---PGAVGLLVQALEQSD 85 (118)
T ss_dssp HHHHHHHHTCCTTH-HHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSC---SSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHH-HHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHcC
Confidence 34556666776533 222221 344433333333334468999999999999886442 245677777777654
No 125
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.68 E-value=86 Score=22.34 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 010150 215 EIIVDLVDQCRSYQKRVMLLVNN 237 (516)
Q Consensus 215 Eli~EL~~qCr~~q~rI~rLI~~ 237 (516)
+.-..++..|.++|+.|+.|+.+
T Consensus 12 ~rkerIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 12 DRRERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455789999999999998864
Done!