Citrus Sinensis ID: 010152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNKRASKASTCV
ccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccEEccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEcccccEEEEEEcccccccccccEEEEccccccccccHHHHHHHHHcccccccEEEccccccHHHHHcccccHHHHcccccHHHHHccccccccccccEEEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHcccccccccccccEEEEEEEcccccccccccccc
ccccccccccccEEEEEEEEEccccccccccccccccccccEEEcccccccccHHHHHHHHHHHccccccccccHHHccccccccccccccccccHHHHcccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccEcccccHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEccEEEEEEcccccEEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEcEEEEEEEEEEccccHEccccHHcHHHHHHccccccccccEEEEccEEEEEEcccccEEEEEEcccHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccEEEEEEEEccccEcccccEEc
mqqqrmmnsegelkvsfgyqcnghrdgscevpdgynivpgikiqktssfsclsgaalsanATLANTNicngligaeilpsldspnsfrrvpssptlsrLDMLSSSLQsslsnlscspsspsdlpeydtcvsklmiapcrsegilngMEVQvaggaageDRVQAVCSEEHGLLFCAiydgfngrdaADFLAGTLYESVMFYSNLFEweskidatrapddsefgghlqyifederkdsaansfanaslhpereissSFQHAVLDSLQRALNQAENDFLHMVEQemedrpdlvsvGSCVLLVLLhgndlytlnlgdsrAVLATYdevndlsghKRLKAIqlteshtvenedERTRllsehpddpmpilagkvkgkLKVTRAFGVGYLKKKNLNDALMGILRVrnlisppyvstrpslnvhritksDHFVIVAsdglfdfftneetvDLVGCYivsnpsgdpaKFLLEHLVERAAECAGFSleelmnvpagrrrkyhdDVTVIVIILGTnkraskastcv
mqqqrmmnsegELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKaiqlteshtvenedertrllsehpddpmpilagkvkgklkVTRAFgvgylkkknlnDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELmnvpagrrrkyhdDVTVIVIilgtnkraskastcv
MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSClsgaalsanatlantnICNGLIGAEILPSLDSPNSFRRVPSSPTlsrldmlssslqsslsnlscspsspsdlpEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDlvsvgscvllvllHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNKRASKASTCV
**************VSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILP**********************************************YDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDAT*******FGGHLQYIF*********************************************FLHMV*******PDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAI***************************ILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGT***********
**************VSFGYQCNGHR***************************************************************************************************************************VQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESK*********SEFGGHLQYIFEDERKDSAANSFANASLHP**********AVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYI**************HLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILG************
**********GELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDML*********************PEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTES**********RLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNK*********
*********EGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDS************************************************************************AGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNKRASK*****
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MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVxxxxxxxxxxxxxxxxxxxxxEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNKRASKASTCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q9LUS8493 Probable protein phosphat yes no 0.932 0.975 0.641 1e-173
Q7XVF9520 Probable protein phosphat yes no 0.953 0.946 0.526 1e-145
Q84T94639 Protein phosphatase 2C 35 no no 0.680 0.549 0.402 3e-72
Q9LQN6662 Probable protein phosphat no no 0.693 0.540 0.371 4e-68
Q9ZV25654 Probable protein phosphat no no 0.678 0.535 0.358 4e-67
Q6ZGY0596 Probable protein phosphat no no 0.687 0.595 0.385 4e-66
Q9LZ86674 Probable protein phosphat no no 0.687 0.526 0.350 1e-65
A3AZ89593 Putative protein phosphat no no 0.645 0.561 0.400 1e-65
Q9SR24650 Probable protein phosphat no no 0.699 0.555 0.356 2e-65
Q10NB9631 Probable protein phosphat no no 0.676 0.553 0.389 3e-65
>sp|Q9LUS8|P2C40_ARATH Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1 Back     alignment and function desciption
 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/510 (64%), Positives = 390/510 (76%), Gaps = 29/510 (5%)

Query: 11  GELKVSFGYQCNGHRDGSCE--VPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNI 68
           GE+++SFGYQCN  + G  E  + DG  ++ G ++QKTSSFSCLSGAALS N TLANTNI
Sbjct: 9   GEIEISFGYQCNNKKIGIPEDKIADGREVLGGFRLQKTSSFSCLSGAALSGNPTLANTNI 68

Query: 69  CNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDT 128
           CNG+IG+EILPSLDSP SFR+VPSSP LS+LD+LS SL  S+ +LSCS S+    PE ++
Sbjct: 69  CNGVIGSEILPSLDSPKSFRKVPSSPALSKLDILSPSLHGSMVSLSCSSSTSPSPPEPES 128

Query: 129 CVSKLMIAPCR-SEG-ILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAA 186
           C    M +P   +EG +L+ MEVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGFNGRDAA
Sbjct: 129 CYLTSMSSPSSVNEGFLLSAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAA 188

Query: 187 DFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASL 246
           DFLA TLYES++F+  L + + K   T++ DD E    L+ +      D ++        
Sbjct: 189 DFLACTLYESIVFHLQLLDRQMK--QTKSDDDGE---KLELLSNISNVDYSSTDL----- 238

Query: 247 HPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDL 306
                    F+  VLD L RAL QAE DFL MVEQEME+RPDLVSVGSCVL+ LL G DL
Sbjct: 239 ---------FRQGVLDCLNRALFQAETDFLRMVEQEMEERPDLVSVGSCVLVTLLVGKDL 289

Query: 307 YTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILA 366
           Y LNLGDSRAVLATY+      G+K+L+A+QLTE HTV+NE E  RLLSEH DDP  ++ 
Sbjct: 290 YVLNLGDSRAVLATYN------GNKKLQAVQLTEDHTVDNEVEEARLLSEHLDDPKIVIG 343

Query: 367 GKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFV 426
           GK+KGKLKVTRA GVGYLKK+ LNDALMGILRVRNL+SPPYVS  PS+ VH+IT+SDHFV
Sbjct: 344 GKIKGKLKVTRALGVGYLKKEKLNDALMGILRVRNLLSPPYVSVEPSMRVHKITESDHFV 403

Query: 427 IVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPA 486
           IVASDGLFDFF+NEE + LV  ++ SNPSGDPAKFLLE LV +AA  AGF+LEEL NVPA
Sbjct: 404 IVASDGLFDFFSNEEAIGLVHSFVSSNPSGDPAKFLLERLVAKAAARAGFTLEELTNVPA 463

Query: 487 GRRRKYHDDVTVIVIILGTNKRASKASTCV 516
           GRRR+YHDDVT++VI LGT++R SKAST V
Sbjct: 464 GRRRRYHDDVTIMVITLGTDQRTSKASTFV 493

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q7XVF9|P2C39_ORYSJ Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica GN=Os04g0403701 PE=2 SV=2 Back     alignment and function description
>sp|Q84T94|P2C35_ORYSJ Protein phosphatase 2C 35 OS=Oryza sativa subsp. japonica GN=XB15 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQN6|P2C04_ARATH Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZV25|P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZGY0|P2C26_ORYSJ Probable protein phosphatase 2C 26 OS=Oryza sativa subsp. japonica GN=Os02g0690500 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ86|P2C66_ARATH Probable protein phosphatase 2C 66 OS=Arabidopsis thaliana GN=PLL2 PE=2 SV=1 Back     alignment and function description
>sp|A3AZ89|P2C46_ORYSJ Putative protein phosphatase 2C 46 OS=Oryza sativa subsp. japonica GN=Os05g0111800 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR24|P2C36_ARATH Probable protein phosphatase 2C 36 OS=Arabidopsis thaliana GN=PLL3 PE=2 SV=1 Back     alignment and function description
>sp|Q10NB9|P2C31_ORYSJ Probable protein phosphatase 2C 31 OS=Oryza sativa subsp. japonica GN=Os03g0275100 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
356519974493 PREDICTED: probable protein phosphatase 0.955 1.0 0.694 0.0
297736872503 unnamed protein product [Vitis vinifera] 0.961 0.986 0.711 0.0
224118948511 predicted protein [Populus trichocarpa] 0.974 0.984 0.709 0.0
255551731495 protein phosphatase-2c, putative [Ricinu 0.922 0.961 0.699 0.0
388520973513 unknown [Lotus japonicus] 0.982 0.988 0.682 0.0
224107337503 predicted protein [Populus trichocarpa] 0.959 0.984 0.707 0.0
449432842521 PREDICTED: probable protein phosphatase 0.986 0.976 0.672 0.0
449527205521 PREDICTED: LOW QUALITY PROTEIN: probable 0.986 0.976 0.670 0.0
356532575488 PREDICTED: probable protein phosphatase 0.937 0.991 0.684 0.0
357478763503 hypothetical protein MTR_4g119830 [Medic 0.968 0.994 0.663 1e-180
>gi|356519974|ref|XP_003528643.1| PREDICTED: probable protein phosphatase 2C 40-like [Glycine max] Back     alignment and taxonomy information
 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/511 (69%), Positives = 413/511 (80%), Gaps = 18/511 (3%)

Query: 6   MMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLAN 65
           M+NSEG+LK+SFGY+CN  R   CEV  G  I+PG++  +TSSFSC SGAALSANATLAN
Sbjct: 1   MLNSEGDLKISFGYKCNSDRGIPCEVASGCKILPGVR--RTSSFSCFSGAALSANATLAN 58

Query: 66  TNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPE 125
           TNICNG IG EILPS DSPNSFR+V SSP+LS+LD+LSSSL +SL+ LSCSPS+ SD+ E
Sbjct: 59  TNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPNSLTYLSCSPSTTSDILE 118

Query: 126 YDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDA 185
           YD+C  K M  P RSEG LN  EVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGFNGRDA
Sbjct: 119 YDSCTLKSMSDPSRSEGFLNAKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDA 178

Query: 186 ADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANAS 245
           ADFLAGTLY++++ Y N   WE +  + +A DD   GG LQY               N S
Sbjct: 179 ADFLAGTLYDTIISYFNKLIWELEPGSVKAYDDGCLGGSLQY---------------NPS 223

Query: 246 LHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGND 305
              E    S F + VLD L+R+++QAENDFL+MVEQEME+RPDLVS+GSCVLLVLLHGND
Sbjct: 224 TKSEVSCDS-FSYGVLDILERSISQAENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGND 282

Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
           LYTLNLGDSRAVLAT   V+ +   +RL+AIQLT++HTV+NE ER RLL++HPDDP  ++
Sbjct: 283 LYTLNLGDSRAVLATCTTVDRMDKRERLEAIQLTDNHTVDNEVERARLLADHPDDPKIVI 342

Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
            GKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVR+L SPPY+ST+PSLNVHRI+ SD F
Sbjct: 343 GGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYISTQPSLNVHRISNSDQF 402

Query: 426 VIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVP 485
           VIV SDGLFDFF+N+E V LV  YI+SNP GDPAKFL+E LV RAA+ AG S+EELMN+P
Sbjct: 403 VIVGSDGLFDFFSNDEAVKLVESYILSNPFGDPAKFLIEQLVARAADSAGLSMEELMNIP 462

Query: 486 AGRRRKYHDDVTVIVIILGTNKRASKASTCV 516
           AGRRRKYHDDVTVIVI+LG N+R SKASTC+
Sbjct: 463 AGRRRKYHDDVTVIVIMLGMNQRTSKASTCI 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736872|emb|CBI26073.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118948|ref|XP_002331343.1| predicted protein [Populus trichocarpa] gi|222873376|gb|EEF10507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551731|ref|XP_002516911.1| protein phosphatase-2c, putative [Ricinus communis] gi|223543999|gb|EEF45525.1| protein phosphatase-2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388520973|gb|AFK48548.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224107337|ref|XP_002314451.1| predicted protein [Populus trichocarpa] gi|222863491|gb|EEF00622.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432842|ref|XP_004134207.1| PREDICTED: probable protein phosphatase 2C 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527205|ref|XP_004170603.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532575|ref|XP_003534847.1| PREDICTED: probable protein phosphatase 2C 40-like [Glycine max] Back     alignment and taxonomy information
>gi|357478763|ref|XP_003609667.1| hypothetical protein MTR_4g119830 [Medicago truncatula] gi|355510722|gb|AES91864.1| hypothetical protein MTR_4g119830 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2089293493 AT3G16560 [Arabidopsis thalian 0.494 0.517 0.685 2.4e-140
TAIR|locus:2041444856 POL "poltergeist" [Arabidopsis 0.344 0.207 0.446 3e-61
TAIR|locus:2062481783 PLL1 "poltergeist like 1" [Ara 0.344 0.227 0.472 7.3e-61
TAIR|locus:2180152674 PLL2 "pol-like 2" [Arabidopsis 0.331 0.253 0.444 9e-60
TAIR|locus:2083539650 PLL3 "pol-like 3" [Arabidopsis 0.339 0.269 0.445 3.8e-59
TAIR|locus:2026605662 PLL5 "pol-like 5" [Arabidopsis 0.331 0.258 0.461 5e-58
TAIR|locus:2053265654 PLL4 "poltergeist like 4" [Ara 0.331 0.261 0.461 2.4e-57
TAIR|locus:2091265385 AT3G12620 [Arabidopsis thalian 0.608 0.815 0.296 4.7e-32
TAIR|locus:2156877385 AT5G66080 [Arabidopsis thalian 0.625 0.838 0.296 1.6e-31
TAIR|locus:2121234400 AT4G38520 [Arabidopsis thalian 0.608 0.785 0.283 3.3e-31
TAIR|locus:2089293 AT3G16560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
 Identities = 179/261 (68%), Positives = 206/261 (78%)

Query:   256 FQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDXXXXXXXXXXXXXHGNDLYTLNLGDSR 315
             F+  VLD L RAL QAE DFL MVEQEME+RPD              G DLY LNLGDSR
Sbjct:   239 FRQGVLDCLNRALFQAETDFLRMVEQEMEERPDLVSVGSCVLVTLLVGKDLYVLNLGDSR 298

Query:   316 AVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKV 375
             AVLATY+      G+K+L+A+QLTE HTV+NE E  RLLSEH DDP  ++ GK+KGKLKV
Sbjct:   299 AVLATYN------GNKKLQAVQLTEDHTVDNEVEEARLLSEHLDDPKIVIGGKIKGKLKV 352

Query:   376 TRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFD 435
             TRA GVGYLKK+ LNDALMGILRVRNL+SPPYVS  PS+ VH+IT+SDHFVIVASDGLFD
Sbjct:   353 TRALGVGYLKKEKLNDALMGILRVRNLLSPPYVSVEPSMRVHKITESDHFVIVASDGLFD 412

Query:   436 FFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDD 495
             FF+NEE + LV  ++ SNPSGDPAKFLLE LV +AA  AGF+LEEL NVPAGRRR+YHDD
Sbjct:   413 FFSNEEAIGLVHSFVSSNPSGDPAKFLLERLVAKAAARAGFTLEELTNVPAGRRRRYHDD 472

Query:   496 VTVIVIILGTNKRASKASTCV 516
             VT++VI LGT++R SKAST V
Sbjct:   473 VTIMVITLGTDQRTSKASTFV 493
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2041444 POL "poltergeist" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062481 PLL1 "poltergeist like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180152 PLL2 "pol-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083539 PLL3 "pol-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026605 PLL5 "pol-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053265 PLL4 "poltergeist like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121234 AT4G38520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XVF9P2C39_ORYSJ3, ., 1, ., 3, ., 1, 60.52690.95340.9461yesno
Q9LUS8P2C40_ARATH3, ., 1, ., 3, ., 1, 60.64110.93210.9756yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 4e-44
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 9e-41
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 1e-26
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-20
PTZ00224381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 3e-08
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 2e-07
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  155 bits (395), Expect = 4e-44
 Identities = 87/349 (24%), Positives = 134/349 (38%), Gaps = 109/349 (31%)

Query: 156 AGEDRVQAVCSE-EHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATR 214
             ED V    +          ++DG  G  A +F +  L E +                 
Sbjct: 14  TNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEEL----------------- 56

Query: 215 APDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAEND 274
                                          L    E  +  +  + ++L++A  +A+ +
Sbjct: 57  -------------------------------LEELEETLTLSEEDIEEALRKAFLRADEE 85

Query: 275 FLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLK 334
            L   +    D PD    G+  ++ L+ GN LY  N+GDSRAVL    E           
Sbjct: 86  ILEEAQ----DEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGE----------- 130

Query: 335 AIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALM 394
           A+QLT+ H   NE+ER R+          +  G+V G L VTRA G   LK         
Sbjct: 131 AVQLTKDHKPVNEEERERIEKAGGR----VSNGRVPGVLAVTRALGDFDLK--------- 177

Query: 395 GILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNP 454
                      P VS  P + V ++T+ D F+I+ASDGL+D  +N+E VD+V     S  
Sbjct: 178 -----------PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVR----SEL 222

Query: 455 SGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIIL 503
           + +  +   + LV+ A                  RR  HD++TV+V+ L
Sbjct: 223 AKEDLQEAAQELVDLA-----------------LRRGSHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
PTZ00224381 protein phosphatase 2C; Provisional 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.88
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.75
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.7
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.63
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.39
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.21
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.09
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-69  Score=548.94  Aligned_cols=377  Identities=38%  Similarity=0.591  Sum_probs=304.9

Q ss_pred             CCCCCCCCcccccCCCCCCCccccccccccccCCCCCcCCCCCCCCCCccccccccccCCCC-CCCcccccchhccCCCC
Q 010152           78 LPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCR-SEGILNGMEVQVAGGAA  156 (516)
Q Consensus        78 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~s~~~p~~-~~~~~~~~~~q~~~~~~  156 (516)
                      ++.+.++.+|+++.+.|......++++......++.+.+-+...+......+.-++++.+-. +..++...++||+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~   84 (390)
T KOG0700|consen    5 KISLSSPKSFRRMKSTPMRLKRSCLRPIRRGESSSRSGSDSSGNSVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKA   84 (390)
T ss_pred             eeecccccccchhccccchhhhhccCCCccccccccccccCCCCCcccccccccccccCcccchhhhhhhhhhhhhcCCc
Confidence            57788899998888766544455566555422222221111111111111111111111111 44566777999999999


Q ss_pred             CCceEEeeecCCCCeEEEEEEcCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCccCCccchhhhhhhhhh
Q 010152          157 GEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDS  236 (516)
Q Consensus       157 nEDr~~~~~~~~~g~~ffgVfDGHGG~~aa~~as~~L~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (516)
                      .|||+.+.+.++++|+||||||||||++|++|++++||.+|..++..+.|..++.- .                . +.+.
T Consensus        85 ~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f-~----------------~-e~~~  146 (390)
T KOG0700|consen   85 EEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERF-P----------------S-EYKS  146 (390)
T ss_pred             ccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhcccc-c----------------c-cccc
Confidence            99999999999999999999999999999999999999999999999999876610 0                0 0000


Q ss_pred             hhh-h-ccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEeCCeEEEEEecCc
Q 010152          237 AAN-S-FANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDS  314 (516)
Q Consensus       237 ~~~-~-~~~~~~~~~~~~~~~~~~~v~~~L~~af~~~d~~~~~~~~~~~~~~~~~~~~GSTa~v~li~~~~L~vANvGDS  314 (516)
                      .+. . ..|++.. ++  ....+..+.++|.+||+++|++|+.++.+.....|+++.+||||+|++|.+.+|||||+|||
T Consensus       147 ~~~~~~~~~~~~~-~~--~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDS  223 (390)
T KOG0700|consen  147 EELEHLLVYWKQL-SS--ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDS  223 (390)
T ss_pred             chhhhhhhhhhcc-cc--cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcc
Confidence            011 1 1233333 21  12236789999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCcccccCCCc-eEEEEcCCCCCCCCHHHHhhHhhcCCCCCCceecC--cccCccccccccCChhhhhccch-
Q 010152          315 RAVLATYDEVNDLSGHKR-LKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG--KVKGKLKVTRAFGVGYLKKKNLN-  390 (516)
Q Consensus       315 RAvL~r~~~~~~~~~~~~-~~~~~LT~dH~~~~~~E~~RI~~~hp~~~~vi~~~--Rv~G~L~vTRa~GD~~lK~~~~~-  390 (516)
                      ||||++..      +.+. |.++|||.||+.++++|++||+.+||+++.++.++  ||+|.|.|||||||.+||++++| 
T Consensus       224 RAVLG~~~------~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~  297 (390)
T KOG0700|consen  224 RAVLGVVE------NNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQ  297 (390)
T ss_pred             hhhhceec------CCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhcc
Confidence            99999887      4555 79999999999999999999999999999888776  99999999999999999999999 


Q ss_pred             hhhhhhhhcccCCCCCceeeeeeEEEEEccCCCeEEEEEcCCCCCCCCHHHHHHHHHhhhhc-CCCCChHHHHHHHHHHH
Q 010152          391 DALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVS-NPSGDPAKFLLEHLVER  469 (516)
Q Consensus       391 ~~~~~~~~~~~~~tpP~Vs~~Pdv~~~~L~~~D~FLVLaSDGLwD~ls~eEvv~iV~~~~~~-~~~~~~a~~la~~Ll~~  469 (516)
                      ++++++|+++++.|||||+++|+|++|+|+|.|+|||||||||||+|||||+|++|.+++.+ .|.+++|+++.+.++.+
T Consensus       298 e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~  377 (390)
T KOG0700|consen  298 EPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGR  377 (390)
T ss_pred             chhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999999999987 88899999999999999


Q ss_pred             HHHHcCCchhhh
Q 010152          470 AAECAGFSLEEL  481 (516)
Q Consensus       470 A~~~~g~~~~~l  481 (516)
                      |+++.+|.+++|
T Consensus       378 aakk~~~r~s~l  389 (390)
T KOG0700|consen  378 AAKKRGMRLSDL  389 (390)
T ss_pred             hhhhccccHhhc
Confidence            999888766665

>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 5e-15
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 6e-15
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 1e-07
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 1e-05
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 1e-05
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 2e-05
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 3e-05
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 4e-05
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 4e-05
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 4e-05
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 4e-05
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 4e-05
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 4e-05
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 5e-05
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 5e-05
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 5e-04
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 56/249 (22%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
           G DL+  N GDSRA+L   +E    S      A+ L+  H  +NE E  RL  EHP +  
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNEREVERLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG-VGY-----LKKK-------NLNDALMGILRVRNLISPPY 407
              +   ++ G L   RAFG V +     L+K+        LND         N  +PPY
Sbjct: 264 KSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPY 323
Query: 408 VSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAK------- 460
           ++  P +  HR+   D F+++A+DGL++    ++ V +VG Y+       P         
Sbjct: 324 LTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVT 383
Query: 461 ------FLLE----------------HLVERAAECAGFS------LEELMNVPAGRRRKY 492
                  L E                HL+  A     F       L +++++P    R Y
Sbjct: 384 LGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMY 443
Query: 493 HDDVTVIVI 501
            DD+T+IV+
Sbjct: 444 RDDITIIVV 452
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 9e-76
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 2e-50
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 2e-50
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 2e-37
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 1e-33
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 2e-32
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 5e-32
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 1e-31
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 7e-29
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 1e-26
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 8e-26
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 2e-22
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 1e-06
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 1e-05
1txo_A237 Putative bacterial enzyme; serine/threonine protei 2e-05
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 6e-05
3rnr_A211 Stage II sporulation E family protein; structural 8e-04
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
 Score =  245 bits (626), Expect = 9e-76
 Identities = 87/428 (20%), Positives = 154/428 (35%), Gaps = 68/428 (15%)

Query: 149 VQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFY----SNLF 204
            ++   A  EDR  A    +   +   ++DG  G   +  ++  L+  +         L 
Sbjct: 44  NRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLL 103

Query: 205 EWESKIDATRA--PDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLD 262
           E E+ +++ RA  P          Y  ++  K              +     S    V +
Sbjct: 104 EIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKE 163

Query: 263 SLQRALNQAENDFLHMVEQEMEDR------PDLVSVGSCVLLVLLHGNDLYTLNLGDSRA 316
           +L  A  + +ND     +    +         +   G+   +  + G DL+  N GDSRA
Sbjct: 164 ALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRA 223

Query: 317 VLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP--ILAGKVKGKLK 374
           +L   +E           A+ L+  H  +NE E  RL  EHP +     +   ++ G L 
Sbjct: 224 MLGVQEEDG------SWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLM 277

Query: 375 VTRAFGVGYLKK-------------KNLNDALMGILRVRNLISPPYVSTRPSLNVHRITK 421
             RAFG    K                LND         N  +PPY++  P +  HR+  
Sbjct: 278 PFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRP 337

Query: 422 SDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAK--------------------- 460
            D F+++A+DGL++    ++ V +VG Y+       P                       
Sbjct: 338 QDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAK 397

Query: 461 --FLLE------HLVERA------AECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTN 506
              + E      HL+  A             L +++++P    R Y DD+T+IV+   ++
Sbjct: 398 MSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSH 457

Query: 507 KRASKAST 514
              +  + 
Sbjct: 458 VVGAYQNQ 465
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
3rnr_A211 Stage II sporulation E family protein; structural 100.0
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.73
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.69
3f79_A255 Probable two-component response regulator; adaptor 99.53
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.4
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.94
3eq2_A394 Probable two-component response regulator; adaptor 97.69
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=100.00  E-value=1.4e-54  Score=464.52  Aligned_cols=377  Identities=22%  Similarity=0.304  Sum_probs=240.0

Q ss_pred             CCcccc---ccccccccCCCCCcCCCCC-----CCCCCccccccccccCCCCCCCcccccchhccCCCCCCceEEeeecC
Q 010152           96 LSRLDM---LSSSLQSSLSNLSCSPSSP-----SDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSE  167 (516)
Q Consensus        96 l~~~~~---~~~~~~~~~~~~s~~~s~~-----~~~~~~~~~~~~s~~~p~~~~~~~~~~~~q~~~~~~nEDr~~~~~~~  167 (516)
                      |+|.+|   |+.+++      |+.+...     +.+..|++++                    ++.+..|||++.+....
T Consensus         9 l~~~~~~~~l~~~e~------s~~~~~~~g~~~~~v~~~~s~~--------------------g~~R~~nED~~~v~~~~   62 (467)
T 2pnq_A            9 LTPPQVNSILKANEY------SFKVPEFDGKNVSSILGFDSNR--------------------LPANAPIEDRRSATTCL   62 (467)
T ss_dssp             CCHHHHHHHHHHHCE------EEECCCCTTTCCCSEEEEEEEE--------------------ECCSSSCCEEEEEEEES
T ss_pred             CCHHHHHHHHhccCe------eEEecCCCCCcccceEEEEeec--------------------cCCCCCCCCceeeeecc
Confidence            667666   888887      5555322     2355555443                    34466779999776543


Q ss_pred             CCCeEEEEEEcCCCchhHHHHHHHHHHHHHHHHhh--hhhhhh----hcccCCCCCCCccCCccchhhhhhhhhhhhh-h
Q 010152          168 EHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSN--LFEWES----KIDATRAPDDSEFGGHLQYIFEDERKDSAAN-S  240 (516)
Q Consensus       168 ~~g~~ffgVfDGHGG~~aa~~as~~L~~~i~~~l~--~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (516)
                      ...+.||||||||||+.||+|++++|+.+|...+.  .+..+.    ...........+++....+  ....+...+. .
T Consensus        63 ~~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~y~~~  140 (467)
T 2pnq_A           63 QTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDY--FSKEASKLYFNG  140 (467)
T ss_dssp             SSSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCC--CCSTTHHHHHHH
T ss_pred             CCCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhcccccccccccccccccc--chhhhhhhhhcc
Confidence            33445679999999999999999999999987631  000110    0000000000011110000  0000000111 0


Q ss_pred             c-cccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCCCCCceEEEEEEeCCeEEEEEecC
Q 010152          241 F-ANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQE------MEDRPDLVSVGSCVLLVLLHGNDLYTLNLGD  313 (516)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~v~~~L~~af~~~d~~~~~~~~~~------~~~~~~~~~~GSTa~v~li~~~~L~vANvGD  313 (516)
                      + .+++..............+.++|++||.++|++|.......      ....++...+|||++++++.+++||||||||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGD  220 (467)
T 2pnq_A          141 LRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGD  220 (467)
T ss_dssp             HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESS
T ss_pred             hhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECCEEEEEECCC
Confidence            0 01100000000000001578899999999999997654320      0001123458999999999999999999999


Q ss_pred             cceEEEEeCCcccccCCCceEEEEcCCCCCCCCHHHHhhHhhcCCCC--CCceecCcccCccccccccCChhhhhcc-ch
Q 010152          314 SRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDD--PMPILAGKVKGKLKVTRAFGVGYLKKKN-LN  390 (516)
Q Consensus       314 SRAvL~r~~~~~~~~~~~~~~~~~LT~dH~~~~~~E~~RI~~~hp~~--~~vi~~~Rv~G~L~vTRa~GD~~lK~~~-~~  390 (516)
                      |||||++.+      .++.|++++||.||++.++.|++||.++||..  +.++..+|++|.|++||||||..||... +.
T Consensus       221 SRa~l~r~~------~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~Rv~G~l~vtRAlGd~~~K~~~~~~  294 (467)
T 2pnq_A          221 SRAMLGVQE------EDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ  294 (467)
T ss_dssp             CEEEEEEEC------TTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSSSBTTTBSSSBCEECGGGTSCHHHH
T ss_pred             ceEEEEEec------CCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecCccccccccchhcCchhhcccchhh
Confidence            999999975      45678999999999999999999999999754  3566789999999999999999999531 11


Q ss_pred             hh-h---hh--------hhhcccCCCCCceeeeeeEEEEEccCCCeEEEEEcCCCCCCCCHHHHHHHHHhhhhcCCCCCh
Q 010152          391 DA-L---MG--------ILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDP  458 (516)
Q Consensus       391 ~~-~---~~--------~~~~~~~~tpP~Vs~~Pdv~~~~L~~~D~FLVLaSDGLwD~ls~eEvv~iV~~~~~~~~~~~~  458 (516)
                      .. +   .|        .+.++++.+||||+++|+|..++|.++|.|||||||||||+|+++||+++|..++......+|
T Consensus       295 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p  374 (467)
T 2pnq_A          295 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQP  374 (467)
T ss_dssp             HHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCSSCC-
T ss_pred             hhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChHHHHHHHHHHHhhccccCc
Confidence            10 0   11        123456789999999999999999999999999999999999999999999998754211111


Q ss_pred             -----------------------------HHHHHHHHHHHHHHHc--C-Cc---hhhhcccccCCCCCCCCceEEEEEEe
Q 010152          459 -----------------------------AKFLLEHLVERAAECA--G-FS---LEELMNVPAGRRRKYHDDVTVIVIIL  503 (516)
Q Consensus       459 -----------------------------a~~la~~Ll~~A~~~~--g-~~---~~~l~~~~~~~~R~~~DNITVIVI~l  503 (516)
                                                   .+++|..|+..|+..+  | ++   +.+|+.||++.+|+++||||||||+|
T Consensus       375 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R~~~DdITViVv~~  454 (467)
T 2pnq_A          375 IAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQF  454 (467)
T ss_dssp             ------------------------------CCHHHHHHHHHHC-------------------------CCSCEEEEEEEE
T ss_pred             ccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHhhhcCCccccccCCCCcEEEEEEe
Confidence                                         1456888999888765  4 44   56799999999999999999999999


Q ss_pred             CCC
Q 010152          504 GTN  506 (516)
Q Consensus       504 ~~~  506 (516)
                      +.+
T Consensus       455 ~~~  457 (467)
T 2pnq_A          455 NSH  457 (467)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            754
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 5e-18
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-06
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 5e-18
 Identities = 61/349 (17%), Positives = 108/349 (30%), Gaps = 97/349 (27%)

Query: 158 EDRVQAVCSEEHG---LLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATR 214
           ED   AV     G     F A+YDG  G   A +    L                     
Sbjct: 36  EDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHL--------------------- 74

Query: 215 APDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAEND 274
                     L +I  ++    +A +                    +++++  +     +
Sbjct: 75  ----------LDHITNNQDFKGSAGA------------------PSVENVKNGIRTGFLE 106

Query: 275 FLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLK 334
               +    E +      GS  + VL+     Y +N GDSR +L            +  K
Sbjct: 107 IDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLL-----------CRNRK 155

Query: 335 AIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDALM 394
               T+ H   N  E+ R+ +      +     +V G L V+RA G    K         
Sbjct: 156 VHFFTQDHKPSNPLEKERIQNAGGSVMIQ----RVNGSLAVSRALGDFDYK--------- 202

Query: 395 GILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNP 454
             +  +              ++ R  + D F+I+A DG++D   NEE  D V   +    
Sbjct: 203 -CVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRL---E 258

Query: 455 SGDPAKFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIIL 503
             D  + +   +V+                     +   D+++VI+I  
Sbjct: 259 VTDDLEKVCNEVVDTC-----------------LYKGSRDNMSVILICF 290
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=392.47  Aligned_cols=259  Identities=24%  Similarity=0.322  Sum_probs=214.3

Q ss_pred             CCCCCCceEEeeecCC---CCeEEEEEEcCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCccCCccchhh
Q 010152          153 GGAAGEDRVQAVCSEE---HGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIF  229 (516)
Q Consensus       153 ~~~~nEDr~~~~~~~~---~g~~ffgVfDGHGG~~aa~~as~~L~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  229 (516)
                      .+..|||++.+.....   ..+.||||||||||+.+|+|++++|++.|.+.+...   ..                    
T Consensus        31 ~R~~~ED~~~~~~~~~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~---~~--------------------   87 (295)
T d1a6qa2          31 WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFK---GS--------------------   87 (295)
T ss_dssp             TSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHH---CS--------------------
T ss_pred             CCCcccCeeEEEcccCCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhc---cc--------------------
Confidence            3567899998776533   357889999999999999999999999998764310   00                    


Q ss_pred             hhhhhhhhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEeCCeEEEE
Q 010152          230 EDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTL  309 (516)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~af~~~d~~~~~~~~~~~~~~~~~~~~GSTa~v~li~~~~L~vA  309 (516)
                                            .......++.++|+++|.++++.+....+.    ......+|||++++++.+++||||
T Consensus        88 ----------------------~~~~~~~~~~~al~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~va  141 (295)
T d1a6qa2          88 ----------------------AGAPSVENVKNGIRTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFI  141 (295)
T ss_dssp             ----------------------SSSCCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEE
T ss_pred             ----------------------cccchHHHHHHHHHHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEE
Confidence                                  111234578889999999999887644332    334556899999999999999999


Q ss_pred             EecCcceEEEEeCCcccccCCCceEEEEcCCCCCCCCHHHHhhHhhcCCCCCCceecCcccCccccccccCChhhhhccc
Q 010152          310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNL  389 (516)
Q Consensus       310 NvGDSRAvL~r~~~~~~~~~~~~~~~~~LT~dH~~~~~~E~~RI~~~hp~~~~vi~~~Rv~G~L~vTRa~GD~~lK~~~~  389 (516)
                      ||||||||+++.+           .+++||.||++.++.|++||.+.|    ..+..+|+.|.|++||||||..+|....
T Consensus       142 nvGDSR~~l~~~~-----------~~~~lT~dH~~~~~~E~~Ri~~~g----g~v~~~r~~g~l~~tRa~Gd~~~k~~~~  206 (295)
T d1a6qa2         142 NCGDSRGLLCRNR-----------KVHFFTQDHKPSNPLEKERIQNAG----GSVMIQRVNGSLAVSRALGDFDYKCVHG  206 (295)
T ss_dssp             EESSCEEEEEETT-----------EEEEECCCCCTTSHHHHHHHHHTT----CCEETTEETTTBSCSBCEECGGGSCCTT
T ss_pred             ecCCCeEEEeecc-----------cceeeccccCcccHHHHhhHhhcC----CcccccccCCceeeeeccCcHHhhhccc
Confidence            9999999999998           999999999999999999999984    5677889999999999999999985311


Q ss_pred             hhhhhhhhhcccCCCCCceeeeeeEEEEEcc-CCCeEEEEEcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 010152          390 NDALMGILRVRNLISPPYVSTRPSLNVHRIT-KSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVE  468 (516)
Q Consensus       390 ~~~~~~~~~~~~~~tpP~Vs~~Pdv~~~~L~-~~D~FLVLaSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~  468 (516)
                                 ...++|+|+++|+|..+++. ++|.|||||||||||+|+++||+++|++.+..   ...++.+|++|++
T Consensus       207 -----------~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~---~~~~~~~a~~Lv~  272 (295)
T d1a6qa2         207 -----------KGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV---TDDLEKVCNEVVD  272 (295)
T ss_dssp             -----------CCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT---CCCHHHHHHHHHH
T ss_pred             -----------cCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhc---CCCHHHHHHHHHH
Confidence                       11234789999999999986 56789999999999999999999999987654   3568889999999


Q ss_pred             HHHHHcCCchhhhcccccCCCCCCCCceEEEEEEeCCC
Q 010152          469 RAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTN  506 (516)
Q Consensus       469 ~A~~~~g~~~~~l~~~~~~~~R~~~DNITVIVI~l~~~  506 (516)
                      .|..+++                 .||||||||+|...
T Consensus       273 ~A~~~gs-----------------~DNiTvivv~~~~~  293 (295)
T d1a6qa2         273 TCLYKGS-----------------RDNMSVILICFPNA  293 (295)
T ss_dssp             HHHHTTC-----------------CSCEEEEEEECTTS
T ss_pred             HHHhcCC-----------------CCCeEEEEEeccCC
Confidence            9987665                 99999999999865
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure