Query 010154
Match_columns 516
No_of_seqs 213 out of 1485
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 21:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-196 5E-201 1530.9 41.2 467 41-508 19-486 (582)
2 PLN03129 NADP-dependent malic 100.0 7E-188 1E-192 1497.3 44.2 460 49-508 39-498 (581)
3 PRK13529 malate dehydrogenase; 100.0 1E-187 2E-192 1491.8 42.6 459 47-508 12-479 (563)
4 PTZ00317 NADP-dependent malic 100.0 2E-187 4E-192 1488.6 42.9 461 46-508 13-478 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 4E-104 8E-109 821.1 26.1 344 85-508 1-350 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1.1E-98 2E-103 831.6 26.3 300 132-507 34-336 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1E-97 2E-102 827.1 26.3 299 132-507 38-340 (763)
8 PRK07232 bifunctional malic en 100.0 7E-97 2E-101 817.4 27.2 299 132-507 30-332 (752)
9 PF00390 malic: Malic enzyme, 100.0 1.9E-83 4.2E-88 607.6 9.8 182 116-297 1-182 (182)
10 PF03949 Malic_M: Malic enzyme 100.0 1.9E-79 4.1E-84 607.1 14.7 199 307-507 1-202 (255)
11 cd05312 NAD_bind_1_malic_enz N 100.0 2.6E-77 5.5E-82 598.4 20.9 199 307-507 1-201 (279)
12 cd00762 NAD_bind_malic_enz NAD 100.0 3.7E-77 8.1E-82 590.3 20.5 199 307-507 1-202 (254)
13 cd05311 NAD_bind_2_malic_enz N 100.0 7.4E-44 1.6E-48 346.7 16.7 172 307-507 1-175 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2E-08 4.4E-13 84.0 11.5 86 309-446 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 98.0 0.00057 1.2E-08 73.7 19.2 159 252-449 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00039 8.5E-09 74.2 10.0 126 308-457 158-285 (417)
17 PLN02477 glutamate dehydrogena 97.5 0.0048 1.1E-07 66.4 17.8 186 253-461 112-324 (410)
18 TIGR00936 ahcY adenosylhomocys 97.4 0.0059 1.3E-07 65.6 16.3 127 299-459 156-293 (406)
19 PRK09414 glutamate dehydrogena 97.4 0.0099 2.1E-07 64.7 17.9 189 253-461 138-357 (445)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0031 6.7E-08 62.2 12.2 133 310-465 2-143 (217)
21 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0016 3.4E-08 66.8 10.0 136 287-449 139-276 (311)
22 PRK00045 hemA glutamyl-tRNA re 97.2 0.0018 3.9E-08 69.2 10.3 125 309-457 161-288 (423)
23 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0045 9.8E-08 66.7 13.3 129 299-461 163-302 (413)
24 PRK14030 glutamate dehydrogena 97.1 0.029 6.2E-07 61.2 18.5 189 253-461 134-357 (445)
25 PLN02494 adenosylhomocysteinas 97.1 0.0069 1.5E-07 66.4 13.0 130 299-462 215-355 (477)
26 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0049 1.1E-07 58.6 10.0 90 316-449 29-119 (168)
27 PF01488 Shikimate_DH: Shikima 97.0 0.00056 1.2E-08 61.9 3.2 101 327-449 8-112 (135)
28 PRK14031 glutamate dehydrogena 96.9 0.034 7.4E-07 60.6 16.9 181 253-449 134-347 (444)
29 TIGR02853 spore_dpaA dipicolin 96.9 0.0083 1.8E-07 61.3 11.0 138 307-474 127-265 (287)
30 COG0373 HemA Glutamyl-tRNA red 96.8 0.0041 8.8E-08 67.1 8.7 134 287-450 139-278 (414)
31 cd01076 NAD_bind_1_Glu_DH NAD( 96.8 0.0073 1.6E-07 59.9 9.8 132 308-461 8-149 (227)
32 PTZ00079 NADP-specific glutama 96.7 0.13 2.8E-06 56.3 19.2 188 253-461 143-366 (454)
33 PRK08306 dipicolinate synthase 96.7 0.014 3E-07 59.8 11.0 128 313-474 134-266 (296)
34 PLN00203 glutamyl-tRNA reducta 96.7 0.0057 1.2E-07 67.6 8.7 121 309-449 243-372 (519)
35 PRK14982 acyl-ACP reductase; P 96.5 0.015 3.3E-07 61.3 10.3 112 310-449 134-249 (340)
36 PLN00106 malate dehydrogenase 96.5 0.023 4.9E-07 59.4 11.1 141 316-472 4-164 (323)
37 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.03 6.4E-07 54.3 11.1 123 309-461 4-129 (200)
38 PTZ00075 Adenosylhomocysteinas 96.4 0.064 1.4E-06 59.0 14.6 124 298-449 214-344 (476)
39 cd05313 NAD_bind_2_Glu_DH NAD( 96.3 0.073 1.6E-06 54.2 13.5 133 309-461 16-167 (254)
40 PRK13940 glutamyl-tRNA reducta 96.3 0.014 3E-07 62.9 8.2 131 288-449 143-276 (414)
41 PRK14192 bifunctional 5,10-met 96.2 0.028 6E-07 57.7 9.9 109 309-461 137-250 (283)
42 PF00670 AdoHcyase_NAD: S-aden 96.2 0.09 2E-06 50.3 12.5 120 308-461 3-123 (162)
43 PRK14175 bifunctional 5,10-met 96.2 0.017 3.7E-07 59.6 8.2 96 309-448 136-232 (286)
44 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.036 7.9E-07 52.4 8.8 114 310-449 7-132 (194)
45 PRK12549 shikimate 5-dehydroge 96.0 0.014 3E-07 59.5 6.2 91 315-422 111-203 (284)
46 cd01065 NAD_bind_Shikimate_DH 95.9 0.028 6.1E-07 50.5 7.1 108 316-449 4-120 (155)
47 cd05197 GH4_glycoside_hydrolas 95.6 0.027 5.8E-07 60.8 7.0 125 332-472 1-166 (425)
48 cd00650 LDH_MDH_like NAD-depen 95.6 0.023 5E-07 56.6 5.9 129 334-477 1-148 (263)
49 PRK00676 hemA glutamyl-tRNA re 95.5 0.057 1.2E-06 57.0 8.9 123 287-451 136-266 (338)
50 TIGR01809 Shik-DH-AROM shikima 95.5 0.031 6.7E-07 56.8 6.6 103 300-430 100-209 (282)
51 cd05291 HicDH_like L-2-hydroxy 95.4 0.043 9.3E-07 56.1 7.4 125 333-474 2-144 (306)
52 TIGR00518 alaDH alanine dehydr 95.4 0.054 1.2E-06 57.3 8.3 101 329-453 165-275 (370)
53 PRK10792 bifunctional 5,10-met 94.9 0.23 5E-06 51.4 11.0 92 311-446 139-231 (285)
54 PRK00066 ldh L-lactate dehydro 94.8 0.06 1.3E-06 55.8 6.6 127 331-474 6-149 (315)
55 PF03807 F420_oxidored: NADP o 94.8 0.045 9.7E-07 45.7 4.5 94 333-448 1-96 (96)
56 PRK08293 3-hydroxybutyryl-CoA 94.6 0.066 1.4E-06 54.0 6.1 122 332-479 4-148 (287)
57 cd05296 GH4_P_beta_glucosidase 94.6 0.071 1.5E-06 57.5 6.6 125 332-472 1-166 (419)
58 PRK09424 pntA NAD(P) transhydr 94.4 0.23 4.9E-06 55.2 10.0 108 328-456 162-296 (509)
59 PRK14191 bifunctional 5,10-met 94.3 0.15 3.3E-06 52.8 8.0 92 311-446 137-229 (285)
60 PRK06223 malate dehydrogenase; 94.3 0.1 2.3E-06 52.9 6.8 120 332-476 3-148 (307)
61 PTZ00082 L-lactate dehydrogena 94.3 0.15 3.3E-06 53.0 8.1 124 332-473 7-154 (321)
62 TIGR02356 adenyl_thiF thiazole 94.3 0.069 1.5E-06 51.7 5.1 104 327-446 17-144 (202)
63 cd05212 NAD_bind_m-THF_DH_Cycl 94.2 0.37 7.9E-06 44.8 9.6 89 312-444 9-98 (140)
64 PTZ00117 malate dehydrogenase; 94.2 0.2 4.4E-06 51.9 8.8 127 330-474 4-149 (319)
65 PF00208 ELFV_dehydrog: Glutam 94.2 0.11 2.3E-06 52.3 6.5 131 305-449 5-151 (244)
66 PRK05086 malate dehydrogenase; 94.1 0.25 5.4E-06 51.2 9.1 105 332-449 1-121 (312)
67 PRK08328 hypothetical protein; 93.9 0.034 7.4E-07 55.0 2.3 54 293-375 7-60 (231)
68 PTZ00325 malate dehydrogenase; 93.9 0.35 7.6E-06 50.6 9.8 107 329-449 6-128 (321)
69 TIGR01763 MalateDH_bact malate 93.8 0.11 2.5E-06 53.5 5.9 124 332-473 2-144 (305)
70 PF00056 Ldh_1_N: lactate/mala 93.7 0.045 9.7E-07 50.2 2.5 115 332-462 1-131 (141)
71 PRK08223 hypothetical protein; 93.6 0.14 3E-06 53.1 6.0 128 290-448 4-154 (287)
72 cd01079 NAD_bind_m-THF_DH NAD 93.4 0.48 1E-05 46.8 9.1 103 312-431 34-147 (197)
73 PRK08644 thiamine biosynthesis 93.3 0.18 4E-06 49.4 6.1 38 327-375 24-61 (212)
74 PRK08605 D-lactate dehydrogena 93.3 0.48 1E-05 49.4 9.5 94 326-448 141-238 (332)
75 PRK09260 3-hydroxybutyryl-CoA 93.3 0.15 3.3E-06 51.3 5.7 32 332-375 2-33 (288)
76 TIGR02354 thiF_fam2 thiamine b 93.2 0.13 2.9E-06 50.0 4.9 107 327-453 17-126 (200)
77 PRK00257 erythronate-4-phospha 93.1 0.74 1.6E-05 49.4 10.8 118 298-447 80-208 (381)
78 PRK12475 thiamine/molybdopteri 93.1 0.13 2.8E-06 54.0 5.0 99 327-444 20-147 (338)
79 cd01337 MDH_glyoxysomal_mitoch 93.1 0.55 1.2E-05 49.0 9.5 123 333-473 2-147 (310)
80 PLN02928 oxidoreductase family 93.0 1.3 2.9E-05 46.5 12.5 170 308-502 120-315 (347)
81 PRK12749 quinate/shikimate deh 93.0 0.21 4.6E-06 51.2 6.4 50 315-375 108-157 (288)
82 PRK08762 molybdopterin biosynt 93.0 0.18 4E-06 53.1 6.0 104 327-446 131-258 (376)
83 COG0169 AroE Shikimate 5-dehyd 93.0 0.16 3.5E-06 52.3 5.5 85 317-422 110-201 (283)
84 PRK14189 bifunctional 5,10-met 92.9 0.37 8E-06 49.9 7.9 92 311-446 138-230 (285)
85 cd05297 GH4_alpha_glucosidase_ 92.8 0.25 5.5E-06 53.1 6.9 125 332-472 1-167 (423)
86 cd00757 ThiF_MoeB_HesA_family 92.7 0.34 7.3E-06 47.6 7.1 38 327-375 17-54 (228)
87 cd00704 MDH Malate dehydrogena 92.5 0.68 1.5E-05 48.4 9.3 121 333-463 2-140 (323)
88 PRK06129 3-hydroxyacyl-CoA deh 92.4 0.22 4.7E-06 50.9 5.5 32 332-375 3-34 (308)
89 PRK15438 erythronate-4-phospha 92.3 1.2 2.6E-05 47.8 11.2 107 309-447 94-208 (378)
90 PRK14178 bifunctional 5,10-met 92.3 0.37 7.9E-06 49.8 7.0 93 310-446 131-224 (279)
91 PRK14194 bifunctional 5,10-met 92.3 0.51 1.1E-05 49.3 8.1 92 311-446 139-231 (301)
92 PRK14027 quinate/shikimate deh 92.3 0.29 6.3E-06 50.2 6.3 49 316-375 112-160 (283)
93 PRK15076 alpha-galactosidase; 92.2 0.36 7.9E-06 52.3 7.1 129 332-476 2-174 (431)
94 PRK14176 bifunctional 5,10-met 92.1 0.57 1.2E-05 48.6 8.2 83 311-431 144-227 (287)
95 PF01210 NAD_Gly3P_dh_N: NAD-d 92.1 0.17 3.7E-06 46.8 4.0 85 333-437 1-93 (157)
96 PRK14619 NAD(P)H-dependent gly 92.0 1.3 2.9E-05 45.2 10.6 33 331-375 4-36 (308)
97 TIGR02992 ectoine_eutC ectoine 91.8 0.78 1.7E-05 47.6 8.8 115 317-458 117-237 (326)
98 PRK12548 shikimate 5-dehydroge 91.8 0.38 8.1E-06 49.1 6.4 57 300-375 103-159 (289)
99 cd01487 E1_ThiF_like E1_ThiF_l 91.7 0.57 1.2E-05 44.5 7.1 32 333-375 1-32 (174)
100 COG0334 GdhA Glutamate dehydro 91.7 5.3 0.00011 43.6 15.1 186 253-461 112-325 (411)
101 cd01336 MDH_cytoplasmic_cytoso 91.5 1.4 3.1E-05 46.0 10.4 135 332-476 3-157 (325)
102 PRK00258 aroE shikimate 5-dehy 91.4 0.46 1E-05 48.0 6.5 88 315-422 106-196 (278)
103 TIGR01758 MDH_euk_cyt malate d 91.4 1.2 2.5E-05 46.7 9.6 134 333-476 1-154 (324)
104 TIGR00561 pntA NAD(P) transhyd 91.4 1.5 3.3E-05 48.9 11.0 167 237-435 80-276 (511)
105 PF02826 2-Hacid_dh_C: D-isome 91.3 0.6 1.3E-05 44.1 6.8 100 322-449 27-130 (178)
106 PRK07688 thiamine/molybdopteri 91.3 0.27 5.9E-06 51.6 4.9 39 327-376 20-58 (339)
107 PF00899 ThiF: ThiF family; I 91.1 0.39 8.3E-06 43.1 5.0 37 330-377 1-37 (135)
108 cd05298 GH4_GlvA_pagL_like Gly 91.1 0.44 9.5E-06 51.9 6.4 129 332-475 1-170 (437)
109 cd05293 LDH_1 A subgroup of L- 91.1 0.55 1.2E-05 48.8 6.8 125 332-474 4-147 (312)
110 PRK05690 molybdopterin biosynt 91.0 0.61 1.3E-05 46.7 6.8 38 327-375 28-65 (245)
111 PRK05600 thiamine biosynthesis 91.0 0.73 1.6E-05 49.1 7.7 103 327-444 37-162 (370)
112 PRK14184 bifunctional 5,10-met 90.8 0.72 1.6E-05 47.9 7.3 96 311-446 137-233 (286)
113 PRK06130 3-hydroxybutyryl-CoA 90.8 0.84 1.8E-05 46.3 7.7 31 332-374 5-35 (311)
114 PRK14190 bifunctional 5,10-met 90.7 0.89 1.9E-05 47.2 7.9 83 311-431 138-221 (284)
115 COG0111 SerA Phosphoglycerate 90.4 2.1 4.4E-05 45.0 10.3 111 299-434 89-224 (324)
116 PRK14183 bifunctional 5,10-met 90.3 1 2.3E-05 46.6 8.0 84 310-431 136-220 (281)
117 TIGR01772 MDH_euk_gproteo mala 90.3 1.9 4.1E-05 45.0 9.9 128 333-476 1-148 (312)
118 PRK05442 malate dehydrogenase; 90.1 1.1 2.3E-05 47.1 7.9 122 332-463 5-144 (326)
119 cd05290 LDH_3 A subgroup of L- 90.1 0.68 1.5E-05 48.1 6.4 124 333-474 1-146 (307)
120 cd00755 YgdL_like Family of ac 89.8 0.52 1.1E-05 47.1 5.2 38 327-375 7-44 (231)
121 PRK14851 hypothetical protein; 89.7 1.4 3.1E-05 50.6 9.2 123 327-465 39-194 (679)
122 cd01339 LDH-like_MDH L-lactate 89.6 0.61 1.3E-05 47.5 5.6 119 334-474 1-142 (300)
123 TIGR01915 npdG NADPH-dependent 89.5 1.4 3.1E-05 42.8 7.8 96 333-451 2-106 (219)
124 PRK14177 bifunctional 5,10-met 89.4 1.5 3.2E-05 45.6 8.2 82 312-431 140-222 (284)
125 PRK14179 bifunctional 5,10-met 89.4 1.2 2.7E-05 46.1 7.6 92 311-446 138-230 (284)
126 cd05292 LDH_2 A subgroup of L- 89.0 0.82 1.8E-05 47.1 6.0 126 333-475 2-144 (308)
127 PRK08374 homoserine dehydrogen 88.8 2.4 5.1E-05 44.5 9.4 105 332-443 3-120 (336)
128 PF01113 DapB_N: Dihydrodipico 88.8 1.9 4.2E-05 38.6 7.6 96 332-444 1-97 (124)
129 PRK14172 bifunctional 5,10-met 88.7 1.8 3.9E-05 44.8 8.3 90 311-444 138-228 (278)
130 PRK14174 bifunctional 5,10-met 88.6 1.4 3.1E-05 45.9 7.5 95 312-446 140-235 (295)
131 PRK07634 pyrroline-5-carboxyla 88.6 1.1 2.3E-05 43.6 6.3 100 330-449 3-102 (245)
132 PF02882 THF_DHG_CYH_C: Tetrah 88.5 1.9 4.2E-05 41.1 7.7 84 310-431 15-99 (160)
133 cd01338 MDH_choloroplast_like 88.5 2.6 5.6E-05 44.1 9.3 121 332-463 3-142 (322)
134 PRK14188 bifunctional 5,10-met 88.4 1.5 3.2E-05 45.8 7.4 92 311-446 138-230 (296)
135 PLN02516 methylenetetrahydrofo 88.2 1.9 4.1E-05 45.1 8.1 84 310-431 146-230 (299)
136 TIGR01759 MalateDH-SF1 malate 88.2 2.9 6.4E-05 43.8 9.5 122 332-463 4-143 (323)
137 PRK14193 bifunctional 5,10-met 88.1 1.9 4.1E-05 44.8 8.0 85 311-431 138-223 (284)
138 PRK07411 hypothetical protein; 88.1 1.2 2.7E-05 47.5 6.9 39 326-375 33-71 (390)
139 PRK14171 bifunctional 5,10-met 88.0 2 4.4E-05 44.7 8.1 85 309-431 137-222 (288)
140 PRK13243 glyoxylate reductase; 87.9 6.4 0.00014 41.2 11.8 143 326-503 145-293 (333)
141 PLN02306 hydroxypyruvate reduc 87.9 4.6 9.9E-05 43.5 11.0 179 297-504 107-326 (386)
142 PRK08291 ectoine utilization p 87.8 2 4.3E-05 44.7 8.0 115 317-458 120-240 (330)
143 PRK12550 shikimate 5-dehydroge 87.8 1.2 2.6E-05 45.6 6.3 48 316-375 108-155 (272)
144 KOG0029 Amine oxidase [Seconda 87.8 0.28 6E-06 54.3 1.8 37 329-368 13-49 (501)
145 PRK14187 bifunctional 5,10-met 87.8 2.2 4.8E-05 44.5 8.3 90 311-444 140-230 (294)
146 PTZ00345 glycerol-3-phosphate 87.7 2.2 4.7E-05 45.6 8.3 24 330-353 10-33 (365)
147 cd05294 LDH-like_MDH_nadp A la 87.6 2.6 5.6E-05 43.6 8.7 121 332-473 1-147 (309)
148 PRK14170 bifunctional 5,10-met 87.6 2.2 4.9E-05 44.3 8.1 83 311-431 137-220 (284)
149 PRK14168 bifunctional 5,10-met 87.6 2.2 4.9E-05 44.5 8.2 98 309-446 139-237 (297)
150 PLN02602 lactate dehydrogenase 87.6 1.3 2.7E-05 47.1 6.5 124 332-474 38-181 (350)
151 PRK06436 glycerate dehydrogena 87.5 5.9 0.00013 41.1 11.2 135 326-500 117-257 (303)
152 TIGR00872 gnd_rel 6-phosphoglu 87.4 1.8 3.8E-05 44.2 7.3 99 333-457 2-102 (298)
153 PF01262 AlaDh_PNT_C: Alanine 87.4 0.27 6E-06 45.9 1.3 89 329-434 18-130 (168)
154 PRK07531 bifunctional 3-hydrox 87.3 1.4 3E-05 48.5 6.8 123 332-479 5-144 (495)
155 TIGR02355 moeB molybdopterin s 87.3 0.6 1.3E-05 46.7 3.7 38 327-375 20-57 (240)
156 PRK14166 bifunctional 5,10-met 87.3 2.4 5.2E-05 44.0 8.1 94 309-446 135-229 (282)
157 cd01485 E1-1_like Ubiquitin ac 87.0 0.6 1.3E-05 45.2 3.4 39 327-376 15-53 (198)
158 PRK14618 NAD(P)H-dependent gly 86.9 0.95 2.1E-05 46.4 5.0 95 332-449 5-107 (328)
159 PRK06035 3-hydroxyacyl-CoA deh 86.9 3.8 8.2E-05 41.4 9.2 32 332-375 4-35 (291)
160 PRK00094 gpsA NAD(P)H-dependen 86.7 1.2 2.6E-05 44.9 5.5 102 333-450 3-109 (325)
161 PRK15116 sulfur acceptor prote 86.5 2.3 5.1E-05 43.6 7.5 106 327-451 26-135 (268)
162 PRK08410 2-hydroxyacid dehydro 86.4 6.4 0.00014 40.8 10.7 135 298-468 85-252 (311)
163 PRK11880 pyrroline-5-carboxyla 86.1 2.8 6E-05 41.5 7.7 96 332-450 3-98 (267)
164 PRK15317 alkyl hydroperoxide r 86.1 1.2 2.5E-05 48.9 5.5 85 279-375 148-243 (517)
165 PRK07574 formate dehydrogenase 86.1 7.7 0.00017 41.8 11.5 145 326-501 187-336 (385)
166 TIGR03140 AhpF alkyl hydropero 86.1 1.2 2.6E-05 48.8 5.6 87 263-352 136-233 (515)
167 cd01492 Aos1_SUMO Ubiquitin ac 86.0 0.69 1.5E-05 44.9 3.2 78 326-420 16-97 (197)
168 PRK12921 2-dehydropantoate 2-r 86.0 1.8 4E-05 43.2 6.4 101 333-450 2-106 (305)
169 TIGR01408 Ube1 ubiquitin-activ 85.8 0.43 9.2E-06 57.0 2.1 43 327-375 415-457 (1008)
170 PRK14106 murD UDP-N-acetylmura 85.7 2.6 5.6E-05 44.8 7.7 117 328-485 2-121 (450)
171 PF02056 Glyco_hydro_4: Family 85.7 1.2 2.6E-05 43.5 4.7 110 333-456 1-152 (183)
172 PRK06522 2-dehydropantoate 2-r 85.7 2.5 5.5E-05 42.0 7.2 100 333-449 2-103 (304)
173 PRK07066 3-hydroxybutyryl-CoA 85.4 2 4.4E-05 45.0 6.6 31 332-374 8-38 (321)
174 COG1486 CelF Alpha-galactosida 85.4 0.62 1.3E-05 51.0 2.9 124 330-468 2-166 (442)
175 PRK12480 D-lactate dehydrogena 85.4 8.4 0.00018 40.4 11.1 120 298-448 91-236 (330)
176 KOG0685 Flavin-containing amin 85.4 0.47 1E-05 52.4 2.0 40 327-368 17-56 (498)
177 PRK14185 bifunctional 5,10-met 85.2 3.7 8E-05 42.9 8.3 94 311-444 137-231 (293)
178 PF07992 Pyr_redox_2: Pyridine 85.2 1.4 2.9E-05 40.6 4.7 32 333-376 1-32 (201)
179 PRK14169 bifunctional 5,10-met 84.9 3.9 8.3E-05 42.5 8.2 84 310-431 135-219 (282)
180 TIGR01771 L-LDH-NAD L-lactate 84.8 1.5 3.3E-05 45.2 5.3 124 336-474 1-140 (299)
181 PRK06487 glycerate dehydrogena 84.5 7.5 0.00016 40.5 10.2 168 298-502 88-288 (317)
182 PRK06141 ornithine cyclodeamin 84.5 4.5 9.8E-05 41.8 8.6 114 329-470 123-241 (314)
183 PRK14180 bifunctional 5,10-met 84.1 4.2 9.1E-05 42.3 8.1 85 309-431 136-221 (282)
184 PRK14173 bifunctional 5,10-met 84.1 4.2 9.2E-05 42.3 8.1 83 311-431 135-218 (287)
185 PRK15469 ghrA bifunctional gly 84.1 7.9 0.00017 40.3 10.2 159 309-501 98-278 (312)
186 PRK09880 L-idonate 5-dehydroge 84.0 11 0.00025 38.3 11.2 122 316-460 156-280 (343)
187 PRK01710 murD UDP-N-acetylmura 83.6 6.2 0.00013 42.6 9.5 116 329-485 12-130 (458)
188 TIGR00507 aroE shikimate 5-deh 83.5 2.6 5.6E-05 42.3 6.2 47 316-374 102-148 (270)
189 cd01483 E1_enzyme_family Super 83.5 1.6 3.4E-05 39.4 4.2 33 333-376 1-33 (143)
190 PLN02616 tetrahydrofolate dehy 83.1 4.4 9.6E-05 43.6 7.9 83 311-431 211-294 (364)
191 PRK14182 bifunctional 5,10-met 83.0 5.4 0.00012 41.5 8.3 83 311-431 137-220 (282)
192 PRK11790 D-3-phosphoglycerate 82.9 10 0.00023 40.9 10.8 173 297-503 96-297 (409)
193 COG0039 Mdh Malate/lactate deh 82.8 4.2 9.1E-05 42.9 7.6 103 332-449 1-121 (313)
194 COG0345 ProC Pyrroline-5-carbo 82.8 6.2 0.00013 40.7 8.7 34 332-374 2-36 (266)
195 PRK05597 molybdopterin biosynt 82.7 1.3 2.9E-05 46.7 3.9 105 327-447 24-152 (355)
196 cd00300 LDH_like L-lactate deh 82.5 2.7 5.9E-05 43.1 6.0 123 334-473 1-141 (300)
197 PRK14181 bifunctional 5,10-met 82.3 6.3 0.00014 41.1 8.6 96 310-445 132-228 (287)
198 PRK09310 aroDE bifunctional 3- 82.3 2.7 5.8E-05 46.2 6.2 47 316-374 317-363 (477)
199 PRK13581 D-3-phosphoglycerate 82.3 12 0.00025 41.8 11.2 140 298-468 86-250 (526)
200 PRK09599 6-phosphogluconate de 82.0 7.1 0.00015 39.8 8.8 93 333-449 2-97 (301)
201 TIGR01381 E1_like_apg7 E1-like 82.0 1.4 3.1E-05 50.5 4.0 40 327-377 334-373 (664)
202 TIGR01285 nifN nitrogenase mol 81.9 2.9 6.2E-05 45.4 6.2 84 319-420 299-382 (432)
203 PRK14620 NAD(P)H-dependent gly 81.7 3.4 7.5E-05 42.2 6.4 31 333-375 2-32 (326)
204 PRK07680 late competence prote 81.7 3.4 7.4E-05 41.4 6.2 98 333-450 2-100 (273)
205 TIGR01327 PGDH D-3-phosphoglyc 81.6 11 0.00025 41.9 10.8 142 298-469 84-250 (525)
206 PRK14167 bifunctional 5,10-met 81.6 6.4 0.00014 41.2 8.3 96 311-446 137-233 (297)
207 PRK15409 bifunctional glyoxyla 81.3 9 0.0002 40.1 9.4 143 326-503 140-290 (323)
208 COG5322 Predicted dehydrogenas 81.3 2 4.3E-05 45.0 4.4 45 308-352 144-189 (351)
209 PRK12439 NAD(P)H-dependent gly 80.9 2.5 5.3E-05 44.1 5.1 103 331-449 7-114 (341)
210 COG0686 Ald Alanine dehydrogen 80.6 2 4.4E-05 45.7 4.3 106 329-458 166-290 (371)
211 PLN00112 malate dehydrogenase 80.5 6.3 0.00014 43.4 8.2 136 331-476 100-255 (444)
212 PRK06153 hypothetical protein; 80.1 2.2 4.7E-05 46.3 4.5 38 327-375 172-209 (393)
213 TIGR03366 HpnZ_proposed putati 80.0 15 0.00033 36.4 10.1 47 316-374 107-153 (280)
214 PRK14186 bifunctional 5,10-met 79.9 7.7 0.00017 40.6 8.2 90 312-445 139-229 (297)
215 PRK07878 molybdopterin biosynt 79.8 1.7 3.6E-05 46.5 3.5 104 327-446 38-165 (392)
216 PRK08229 2-dehydropantoate 2-r 79.8 3.9 8.5E-05 41.8 6.1 103 332-451 3-112 (341)
217 PLN02897 tetrahydrofolate dehy 79.5 6.9 0.00015 41.9 7.9 83 311-431 194-277 (345)
218 PLN02527 aspartate carbamoyltr 79.1 61 0.0013 33.9 14.5 136 263-421 87-228 (306)
219 PLN03139 formate dehydrogenase 79.1 20 0.00044 38.7 11.4 145 326-502 194-344 (386)
220 PLN02819 lysine-ketoglutarate 78.7 11 0.00024 45.6 10.1 115 316-435 179-326 (1042)
221 PRK07679 pyrroline-5-carboxyla 78.5 11 0.00023 38.1 8.6 36 331-374 3-38 (279)
222 PF13738 Pyr_redox_3: Pyridine 78.3 2.4 5.2E-05 39.3 3.7 30 335-375 1-30 (203)
223 PF01494 FAD_binding_3: FAD bi 78.1 2.9 6.3E-05 41.2 4.4 35 332-378 2-36 (356)
224 cd01491 Ube1_repeat1 Ubiquitin 78.1 2.1 4.6E-05 44.3 3.5 38 327-375 15-52 (286)
225 cd08237 ribitol-5-phosphate_DH 78.0 48 0.001 34.0 13.3 35 330-374 163-197 (341)
226 PRK02842 light-independent pro 78.0 10 0.00022 41.0 8.8 116 262-419 248-368 (427)
227 PRK12490 6-phosphogluconate de 77.9 11 0.00025 38.3 8.7 93 333-449 2-97 (299)
228 PRK06932 glycerate dehydrogena 76.9 28 0.0006 36.3 11.3 142 327-503 143-291 (314)
229 PF00070 Pyr_redox: Pyridine n 76.8 5 0.00011 32.6 4.8 35 333-379 1-35 (80)
230 PRK02472 murD UDP-N-acetylmura 76.7 7.1 0.00015 41.5 7.1 35 329-375 3-37 (447)
231 PRK07530 3-hydroxybutyryl-CoA 76.2 18 0.00038 36.6 9.5 32 332-375 5-36 (292)
232 TIGR02371 ala_DH_arch alanine 76.2 17 0.00037 37.9 9.6 104 330-458 127-235 (325)
233 PRK07231 fabG 3-ketoacyl-(acyl 76.1 5.8 0.00013 37.6 5.7 36 328-375 2-38 (251)
234 PRK09754 phenylpropionate diox 75.8 3.9 8.4E-05 43.0 4.8 36 330-375 2-37 (396)
235 KOG0069 Glyoxylate/hydroxypyru 75.5 19 0.00041 38.5 9.7 160 309-504 120-307 (336)
236 PRK06407 ornithine cyclodeamin 75.3 13 0.00027 38.6 8.3 105 330-459 116-226 (301)
237 TIGR03376 glycerol3P_DH glycer 75.3 5.7 0.00012 42.0 5.9 20 333-352 1-20 (342)
238 PRK07340 ornithine cyclodeamin 75.0 22 0.00047 36.8 9.9 105 329-459 123-231 (304)
239 PLN02520 bifunctional 3-dehydr 74.9 6.4 0.00014 43.9 6.4 48 316-375 354-411 (529)
240 PRK06270 homoserine dehydrogen 74.8 24 0.00051 37.1 10.2 105 332-444 3-124 (341)
241 PF03446 NAD_binding_2: NAD bi 74.6 4 8.6E-05 37.9 4.0 102 332-461 2-107 (163)
242 cd01484 E1-2_like Ubiquitin ac 74.4 4 8.7E-05 41.0 4.3 33 333-376 1-33 (234)
243 PRK11883 protoporphyrinogen ox 74.4 2.3 5E-05 44.4 2.7 35 332-367 1-35 (451)
244 PF02423 OCD_Mu_crystall: Orni 74.1 3.5 7.6E-05 42.7 3.9 103 331-458 128-237 (313)
245 PRK10886 DnaA initiator-associ 74.0 15 0.00032 36.1 7.9 100 329-443 39-141 (196)
246 PTZ00142 6-phosphogluconate de 73.4 6.4 0.00014 43.4 5.9 98 332-449 2-104 (470)
247 cd00377 ICL_PEPM Members of th 73.2 1.1E+02 0.0023 30.9 16.7 42 425-470 183-224 (243)
248 TIGR02622 CDP_4_6_dhtase CDP-g 73.1 9.6 0.00021 39.0 6.7 106 329-446 2-127 (349)
249 PF02737 3HCDH_N: 3-hydroxyacy 73.1 5.1 0.00011 38.2 4.5 96 333-443 1-110 (180)
250 PLN02545 3-hydroxybutyryl-CoA 72.8 19 0.00042 36.4 8.8 32 332-375 5-36 (295)
251 cd01486 Apg7 Apg7 is an E1-lik 72.7 4.6 9.9E-05 42.5 4.3 32 333-375 1-32 (307)
252 PRK07877 hypothetical protein; 72.4 9.7 0.00021 44.4 7.2 101 327-446 103-229 (722)
253 PRK06823 ornithine cyclodeamin 72.4 26 0.00056 36.7 9.7 105 330-459 127-236 (315)
254 KOG2250 Glutamate/leucine/phen 72.1 97 0.0021 35.0 14.3 185 257-461 159-379 (514)
255 cd01488 Uba3_RUB Ubiquitin act 71.8 4.8 0.0001 41.9 4.2 32 333-375 1-32 (291)
256 PRK07502 cyclohexadienyl dehyd 71.6 23 0.0005 36.1 9.1 35 331-375 6-40 (307)
257 TIGR01292 TRX_reduct thioredox 71.6 4.6 0.0001 39.4 3.9 31 333-375 2-32 (300)
258 COG0190 FolD 5,10-methylene-te 70.8 12 0.00026 39.2 6.7 123 277-443 92-225 (283)
259 TIGR02028 ChlP geranylgeranyl 70.7 4.8 0.0001 42.6 4.0 21 333-353 2-22 (398)
260 PRK06928 pyrroline-5-carboxyla 70.1 18 0.00039 36.6 7.8 35 332-375 2-37 (277)
261 PF05834 Lycopene_cycl: Lycope 69.8 5.8 0.00012 41.6 4.4 35 334-378 2-36 (374)
262 TIGR02023 BchP-ChlP geranylger 69.6 5.4 0.00012 41.7 4.1 21 333-353 2-22 (388)
263 PRK01713 ornithine carbamoyltr 69.5 30 0.00065 36.6 9.6 138 262-419 91-233 (334)
264 COG2423 Predicted ornithine cy 69.1 24 0.00053 37.5 8.8 120 315-461 116-241 (330)
265 PF03447 NAD_binding_3: Homose 69.0 8.1 0.00018 33.6 4.5 88 338-443 1-88 (117)
266 PLN02688 pyrroline-5-carboxyla 68.9 14 0.0003 36.6 6.6 34 333-374 2-36 (266)
267 cd01489 Uba2_SUMO Ubiquitin ac 68.9 6.6 0.00014 41.3 4.5 32 333-375 1-32 (312)
268 COG1052 LdhA Lactate dehydroge 68.5 34 0.00074 36.1 9.7 147 324-504 139-294 (324)
269 COG0476 ThiF Dinucleotide-util 68.4 5.6 0.00012 39.5 3.8 39 326-375 25-63 (254)
270 PRK06249 2-dehydropantoate 2-r 68.3 14 0.00031 37.8 6.8 105 329-450 3-110 (313)
271 PRK12409 D-amino acid dehydrog 68.2 6.5 0.00014 41.1 4.3 33 332-376 2-34 (410)
272 PRK08618 ornithine cyclodeamin 68.1 13 0.00029 38.6 6.6 102 330-457 126-233 (325)
273 TIGR00873 gnd 6-phosphoglucona 67.8 14 0.0003 40.8 6.9 95 333-447 1-99 (467)
274 KOG1495 Lactate dehydrogenase 67.7 19 0.00041 38.0 7.4 134 327-477 16-167 (332)
275 PLN02268 probable polyamine ox 67.7 2.4 5.2E-05 44.7 1.0 33 333-368 2-34 (435)
276 TIGR03169 Nterm_to_SelD pyridi 67.6 3.8 8.3E-05 42.0 2.5 36 333-377 1-36 (364)
277 PRK09564 coenzyme A disulfide 67.0 7.5 0.00016 41.1 4.6 37 332-378 1-37 (444)
278 PRK06476 pyrroline-5-carboxyla 66.8 9.8 0.00021 37.7 5.1 33 333-374 2-34 (258)
279 PRK06718 precorrin-2 dehydroge 66.7 8.1 0.00018 37.7 4.4 112 328-470 7-122 (202)
280 PRK06184 hypothetical protein; 66.6 7 0.00015 42.4 4.3 34 330-375 2-35 (502)
281 TIGR01214 rmlD dTDP-4-dehydror 66.4 23 0.00051 34.6 7.6 59 333-421 1-60 (287)
282 PF13454 NAD_binding_9: FAD-NA 66.3 6.9 0.00015 36.0 3.7 36 335-377 1-36 (156)
283 TIGR00465 ilvC ketol-acid redu 66.1 21 0.00045 37.4 7.5 25 329-353 1-25 (314)
284 KOG2337 Ubiquitin activating E 66.1 5.1 0.00011 45.1 3.2 36 329-375 338-373 (669)
285 TIGR03693 ocin_ThiF_like putat 65.8 28 0.00061 40.2 8.9 134 256-423 68-216 (637)
286 PRK06847 hypothetical protein; 65.7 7.9 0.00017 39.6 4.3 22 331-352 4-25 (375)
287 PRK13512 coenzyme A disulfide 65.6 6.3 0.00014 42.2 3.7 33 333-375 3-35 (438)
288 TIGR01757 Malate-DH_plant mala 65.6 29 0.00063 37.7 8.7 134 331-476 44-199 (387)
289 PRK06719 precorrin-2 dehydroge 65.5 9.1 0.0002 35.9 4.3 35 328-374 10-44 (157)
290 COG0240 GpsA Glycerol-3-phosph 65.4 13 0.00028 39.6 5.9 94 332-446 2-105 (329)
291 PTZ00431 pyrroline carboxylate 65.0 25 0.00054 35.2 7.6 103 330-449 2-116 (260)
292 KOG2304 3-hydroxyacyl-CoA dehy 65.0 5.5 0.00012 41.0 2.9 32 332-375 12-43 (298)
293 PRK07236 hypothetical protein; 64.8 8.6 0.00019 40.0 4.5 25 329-353 4-28 (386)
294 COG0644 FixC Dehydrogenases (f 64.6 8.3 0.00018 40.6 4.4 36 331-378 3-38 (396)
295 PRK07233 hypothetical protein; 64.5 7.1 0.00015 40.4 3.7 31 333-375 1-31 (434)
296 PRK08163 salicylate hydroxylas 64.4 8.2 0.00018 39.9 4.2 22 331-352 4-25 (396)
297 PRK04176 ribulose-1,5-biphosph 64.3 8.1 0.00018 38.9 4.0 34 331-376 25-58 (257)
298 PRK06046 alanine dehydrogenase 64.2 41 0.0009 35.0 9.3 103 330-458 128-236 (326)
299 TIGR02279 PaaC-3OHAcCoADH 3-hy 64.0 31 0.00067 38.4 8.8 34 330-375 4-37 (503)
300 PF01266 DAO: FAD dependent ox 63.9 11 0.00023 37.3 4.7 32 333-376 1-32 (358)
301 COG0499 SAM1 S-adenosylhomocys 63.8 25 0.00054 38.4 7.6 120 304-458 185-306 (420)
302 PLN02350 phosphogluconate dehy 63.5 21 0.00046 39.8 7.4 97 333-449 8-110 (493)
303 PRK15181 Vi polysaccharide bio 63.4 30 0.00065 35.6 8.0 105 325-446 9-141 (348)
304 PRK07364 2-octaprenyl-6-methox 63.2 7.8 0.00017 40.3 3.8 23 331-353 18-40 (415)
305 PRK09126 hypothetical protein; 63.1 8.7 0.00019 39.6 4.1 23 331-353 3-25 (392)
306 PLN02172 flavin-containing mon 63.0 10 0.00022 41.6 4.7 26 328-353 7-32 (461)
307 PF08122 NDUF_B12: NADH-ubiqui 62.9 5.1 0.00011 32.2 1.8 21 492-512 24-44 (57)
308 TIGR01790 carotene-cycl lycope 62.8 8.5 0.00019 39.7 4.0 31 334-376 2-32 (388)
309 PRK05479 ketol-acid reductoiso 62.5 29 0.00063 36.9 7.8 25 328-352 14-38 (330)
310 TIGR01470 cysG_Nterm siroheme 62.2 11 0.00024 36.9 4.4 36 328-375 6-41 (205)
311 PRK12771 putative glutamate sy 62.2 15 0.00032 40.9 5.9 36 328-375 134-169 (564)
312 TIGR01181 dTDP_gluc_dehyt dTDP 62.1 34 0.00074 33.5 7.8 77 333-421 1-83 (317)
313 COG1179 Dinucleotide-utilizing 62.1 6.9 0.00015 40.4 3.0 108 328-449 27-162 (263)
314 PF13450 NAD_binding_8: NAD(P) 62.0 11 0.00025 30.3 3.8 30 336-377 1-30 (68)
315 KOG0743 AAA+-type ATPase [Post 61.2 13 0.00029 41.1 5.2 104 199-339 241-345 (457)
316 PRK13301 putative L-aspartate 61.2 17 0.00038 37.6 5.8 117 332-472 3-122 (267)
317 PRK06475 salicylate hydroxylas 61.2 9.1 0.0002 40.1 3.9 21 332-352 3-23 (400)
318 PF03435 Saccharop_dh: Sacchar 60.9 4.6 0.0001 42.3 1.6 118 334-472 1-123 (386)
319 TIGR01283 nifE nitrogenase mol 60.9 20 0.00043 39.0 6.5 85 318-418 313-402 (456)
320 COG2072 TrkA Predicted flavopr 60.7 11 0.00024 41.0 4.5 36 330-376 7-42 (443)
321 COG0569 TrkA K+ transport syst 60.5 13 0.00027 36.9 4.5 99 332-449 1-104 (225)
322 PLN00093 geranylgeranyl diphos 60.5 9.9 0.00022 41.3 4.1 27 327-353 33-61 (450)
323 TIGR02032 GG-red-SF geranylger 60.1 11 0.00024 36.5 4.0 32 333-376 2-33 (295)
324 TIGR01316 gltA glutamate synth 60.1 12 0.00027 40.3 4.7 36 328-375 130-165 (449)
325 cd01493 APPBP1_RUB Ubiquitin a 60.0 8.4 0.00018 42.1 3.5 38 327-375 16-53 (425)
326 PRK05808 3-hydroxybutyryl-CoA 60.0 42 0.00091 33.7 8.2 31 332-374 4-34 (282)
327 PRK05732 2-octaprenyl-6-methox 59.8 12 0.00026 38.4 4.5 36 331-375 3-38 (395)
328 PRK07045 putative monooxygenas 59.8 11 0.00024 39.0 4.2 22 332-353 6-27 (388)
329 PRK04965 NADH:flavorubredoxin 59.8 8.9 0.00019 39.9 3.5 35 332-376 3-37 (377)
330 PRK12769 putative oxidoreducta 59.5 11 0.00025 42.6 4.5 35 329-375 325-359 (654)
331 PRK12828 short chain dehydroge 59.5 16 0.00036 34.1 4.9 36 328-375 4-40 (239)
332 PRK11199 tyrA bifunctional cho 59.5 45 0.00097 35.5 8.7 33 331-375 98-131 (374)
333 PRK01438 murD UDP-N-acetylmura 59.4 14 0.00031 39.8 5.0 29 324-352 9-37 (480)
334 COG3349 Uncharacterized conser 59.4 5.5 0.00012 44.4 1.9 46 332-380 1-51 (485)
335 cd01979 Pchlide_reductase_N Pc 59.4 15 0.00033 39.1 5.3 35 318-352 263-297 (396)
336 PRK12810 gltD glutamate syntha 59.4 12 0.00027 40.5 4.6 34 330-375 142-175 (471)
337 PRK06753 hypothetical protein; 59.1 11 0.00025 38.5 4.1 21 333-353 2-22 (373)
338 PF01946 Thi4: Thi4 family; PD 58.5 14 0.00031 37.5 4.5 37 330-378 16-52 (230)
339 PRK07608 ubiquinone biosynthes 58.4 11 0.00024 38.7 3.9 32 332-375 6-37 (388)
340 cd01968 Nitrogenase_NifE_I Nit 58.1 14 0.00031 39.4 4.7 86 319-420 275-365 (410)
341 TIGR00292 thiazole biosynthesi 58.1 12 0.00025 37.8 3.9 37 330-378 20-56 (254)
342 PRK07251 pyridine nucleotide-d 58.0 12 0.00027 39.7 4.3 33 332-376 4-36 (438)
343 PRK06416 dihydrolipoamide dehy 58.0 12 0.00025 40.1 4.1 33 332-376 5-37 (462)
344 PTZ00245 ubiquitin activating 58.0 10 0.00022 39.6 3.4 39 327-376 22-60 (287)
345 PRK10157 putative oxidoreducta 57.7 12 0.00025 40.2 4.0 21 332-352 6-26 (428)
346 PTZ00318 NADH dehydrogenase-li 57.7 8.4 0.00018 41.1 2.9 36 328-375 7-42 (424)
347 TIGR02818 adh_III_F_hyde S-(hy 57.6 49 0.0011 34.3 8.5 45 319-374 174-218 (368)
348 KOG2018 Predicted dinucleotide 57.4 12 0.00026 40.1 3.9 40 327-377 70-109 (430)
349 PRK00536 speE spermidine synth 57.4 18 0.00038 37.2 5.1 84 332-434 74-158 (262)
350 TIGR00441 gmhA phosphoheptose 57.4 73 0.0016 29.4 8.8 37 411-449 79-117 (154)
351 PLN02240 UDP-glucose 4-epimera 57.2 22 0.00048 35.9 5.8 106 328-445 2-131 (352)
352 PLN02676 polyamine oxidase 57.2 28 0.0006 38.3 6.9 24 330-353 25-48 (487)
353 PRK12429 3-hydroxybutyrate deh 57.1 19 0.00041 34.3 5.0 35 329-375 2-37 (258)
354 PRK12491 pyrroline-5-carboxyla 56.5 44 0.00095 34.0 7.8 35 332-374 3-37 (272)
355 PRK12416 protoporphyrinogen ox 56.4 8.1 0.00018 41.2 2.6 46 332-377 2-54 (463)
356 TIGR01505 tartro_sem_red 2-hyd 56.3 36 0.00078 34.3 7.0 31 333-375 1-31 (291)
357 PRK11749 dihydropyrimidine deh 56.1 14 0.0003 39.8 4.3 34 330-375 139-172 (457)
358 PLN02463 lycopene beta cyclase 56.1 13 0.00028 40.6 4.1 32 332-375 29-60 (447)
359 PRK07819 3-hydroxybutyryl-CoA 56.0 15 0.00032 37.5 4.3 22 332-353 6-27 (286)
360 PRK08773 2-octaprenyl-3-methyl 55.9 12 0.00027 38.7 3.8 34 331-376 6-39 (392)
361 TIGR01984 UbiH 2-polyprenyl-6- 55.8 12 0.00026 38.4 3.6 20 334-353 2-21 (382)
362 TIGR03088 stp2 sugar transfera 55.6 81 0.0018 32.0 9.5 37 402-443 265-301 (374)
363 TIGR01373 soxB sarcosine oxida 55.5 18 0.00038 37.8 4.8 38 330-377 29-66 (407)
364 TIGR01377 soxA_mon sarcosine o 55.3 15 0.00032 37.6 4.2 33 333-377 2-34 (380)
365 PRK11259 solA N-methyltryptoph 55.2 15 0.00033 37.5 4.2 34 331-376 3-36 (376)
366 TIGR01988 Ubi-OHases Ubiquinon 55.2 13 0.00029 37.8 3.8 31 334-376 2-32 (385)
367 TIGR03026 NDP-sugDHase nucleot 55.2 39 0.00084 36.1 7.4 31 333-375 2-32 (411)
368 PRK07588 hypothetical protein; 55.1 15 0.00032 38.2 4.1 21 332-352 1-21 (391)
369 PRK08849 2-octaprenyl-3-methyl 55.1 15 0.00033 38.2 4.3 32 332-375 4-35 (384)
370 PRK03515 ornithine carbamoyltr 55.0 79 0.0017 33.7 9.6 138 262-419 90-233 (336)
371 PRK10262 thioredoxin reductase 55.0 11 0.00023 38.3 3.0 24 329-352 4-27 (321)
372 PRK05993 short chain dehydroge 55.0 26 0.00057 34.5 5.7 32 332-375 5-37 (277)
373 PRK08013 oxidoreductase; Provi 54.9 15 0.00031 38.6 4.1 22 331-352 3-24 (400)
374 PRK05749 3-deoxy-D-manno-octul 54.9 42 0.00091 35.3 7.5 38 401-443 311-349 (425)
375 PRK08020 ubiF 2-octaprenyl-3-m 54.7 14 0.00029 38.3 3.8 33 331-375 5-37 (391)
376 TIGR00031 UDP-GALP_mutase UDP- 54.7 15 0.00033 39.4 4.3 31 333-375 3-33 (377)
377 COG0654 UbiH 2-polyprenyl-6-me 54.6 15 0.00033 38.4 4.2 40 331-382 2-43 (387)
378 PRK12266 glpD glycerol-3-phosp 54.5 14 0.00031 40.6 4.2 33 332-376 7-39 (508)
379 cd01490 Ube1_repeat2 Ubiquitin 54.5 16 0.00035 40.2 4.5 37 333-375 1-37 (435)
380 PRK06185 hypothetical protein; 54.3 15 0.00032 38.3 4.0 35 330-376 5-39 (407)
381 PLN02568 polyamine oxidase 54.3 9 0.00019 42.8 2.6 24 330-353 4-27 (539)
382 PRK05866 short chain dehydroge 54.1 26 0.00057 35.2 5.7 38 326-375 35-73 (293)
383 PRK08244 hypothetical protein; 54.1 15 0.00032 39.8 4.1 22 332-353 3-24 (493)
384 COG1748 LYS9 Saccharopine dehy 54.0 18 0.0004 39.3 4.8 85 332-435 2-90 (389)
385 TIGR01789 lycopene_cycl lycope 53.8 20 0.00043 37.8 4.9 36 334-379 2-37 (370)
386 cd05006 SIS_GmhA Phosphoheptos 53.8 83 0.0018 29.4 8.6 34 411-447 101-136 (177)
387 PLN02695 GDP-D-mannose-3',5'-e 53.7 43 0.00094 35.1 7.4 97 330-446 20-137 (370)
388 PRK12770 putative glutamate sy 53.6 17 0.00037 37.5 4.4 34 330-375 17-50 (352)
389 PRK14694 putative mercuric red 53.6 17 0.00036 39.3 4.4 34 330-375 5-38 (468)
390 PRK06392 homoserine dehydrogen 53.5 55 0.0012 34.6 8.1 82 333-420 2-90 (326)
391 PRK08010 pyridine nucleotide-d 53.4 15 0.00032 39.2 3.9 32 332-375 4-35 (441)
392 PRK13403 ketol-acid reductoiso 53.4 23 0.0005 37.9 5.3 64 327-416 12-76 (335)
393 PRK08294 phenol 2-monooxygenas 53.4 13 0.00029 42.2 3.8 43 330-383 31-74 (634)
394 PRK09987 dTDP-4-dehydrorhamnos 53.3 54 0.0012 33.0 7.8 86 333-446 2-104 (299)
395 PRK03803 murD UDP-N-acetylmura 53.3 47 0.001 35.6 7.7 115 330-485 5-121 (448)
396 PRK11728 hydroxyglutarate oxid 53.3 15 0.00033 38.3 4.0 34 332-375 3-36 (393)
397 TIGR02053 MerA mercuric reduct 53.0 16 0.00035 39.2 4.2 30 334-375 3-32 (463)
398 PRK05714 2-octaprenyl-3-methyl 52.8 14 0.00029 38.6 3.5 31 333-375 4-34 (405)
399 TIGR03736 PRTRC_ThiF PRTRC sys 52.8 22 0.00048 36.2 4.9 47 330-377 10-56 (244)
400 PRK12831 putative oxidoreducta 52.7 17 0.00038 39.5 4.4 34 330-375 139-172 (464)
401 PRK12778 putative bifunctional 52.6 19 0.00042 41.5 5.0 35 329-375 429-463 (752)
402 TIGR01179 galE UDP-glucose-4-e 52.6 57 0.0012 32.0 7.6 97 333-444 1-119 (328)
403 PRK11445 putative oxidoreducta 52.6 17 0.00036 37.6 4.1 20 333-352 3-22 (351)
404 PRK08243 4-hydroxybenzoate 3-m 52.5 18 0.00038 37.8 4.3 23 331-353 2-24 (392)
405 PRK06912 acoL dihydrolipoamide 52.5 16 0.00035 39.3 4.1 31 333-375 2-32 (458)
406 PRK00711 D-amino acid dehydrog 52.4 18 0.00038 37.7 4.2 31 333-375 2-32 (416)
407 PRK05976 dihydrolipoamide dehy 52.3 17 0.00036 39.3 4.2 33 331-375 4-36 (472)
408 PRK07538 hypothetical protein; 52.2 17 0.00036 38.3 4.1 20 333-352 2-21 (413)
409 TIGR01350 lipoamide_DH dihydro 52.1 17 0.00038 38.7 4.2 30 333-374 3-32 (461)
410 KOG1370 S-adenosylhomocysteine 52.0 50 0.0011 35.6 7.3 117 323-469 206-338 (434)
411 TIGR03143 AhpF_homolog putativ 51.9 16 0.00035 40.7 4.0 32 333-376 6-37 (555)
412 PF13407 Peripla_BP_4: Peripla 51.8 51 0.0011 31.4 7.0 159 153-339 52-217 (257)
413 COG1063 Tdh Threonine dehydrog 51.8 27 0.00058 36.6 5.5 99 305-421 143-248 (350)
414 PRK08850 2-octaprenyl-6-methox 51.8 18 0.00039 37.9 4.2 33 331-375 4-36 (405)
415 PRK14852 hypothetical protein; 51.7 13 0.00029 44.7 3.5 38 327-375 328-365 (989)
416 PRK01747 mnmC bifunctional tRN 51.7 18 0.00039 41.0 4.5 33 332-376 261-293 (662)
417 PRK07424 bifunctional sterol d 51.6 21 0.00046 38.7 4.8 54 295-375 157-211 (406)
418 PRK12814 putative NADPH-depend 51.4 18 0.00039 41.2 4.4 34 330-375 192-225 (652)
419 PRK09853 putative selenate red 51.4 18 0.00038 43.9 4.5 35 329-375 537-571 (1019)
420 PRK07494 2-octaprenyl-6-methox 51.4 18 0.00039 37.4 4.0 34 331-376 7-40 (388)
421 PF12831 FAD_oxidored: FAD dep 51.3 19 0.0004 38.7 4.3 33 334-378 2-34 (428)
422 KOG2012 Ubiquitin activating e 51.3 10 0.00022 44.9 2.5 116 327-469 426-552 (1013)
423 PRK07589 ornithine cyclodeamin 51.2 82 0.0018 33.6 9.0 104 330-458 128-238 (346)
424 TIGR03589 PseB UDP-N-acetylglu 51.1 37 0.0008 34.7 6.2 106 329-446 2-125 (324)
425 PRK06292 dihydrolipoamide dehy 51.1 19 0.00041 38.4 4.3 33 331-375 3-35 (460)
426 PRK10015 oxidoreductase; Provi 51.1 17 0.00037 39.0 4.0 33 332-376 6-38 (429)
427 PRK12779 putative bifunctional 50.9 19 0.00041 43.1 4.7 39 329-379 304-346 (944)
428 PRK07333 2-octaprenyl-6-methox 50.8 15 0.00033 37.9 3.5 21 333-353 3-23 (403)
429 PRK12829 short chain dehydroge 50.7 33 0.00071 32.9 5.5 36 328-375 8-44 (264)
430 PRK07067 sorbitol dehydrogenas 50.6 16 0.00035 35.2 3.4 36 328-375 3-39 (257)
431 PRK14806 bifunctional cyclohex 50.6 40 0.00086 38.7 7.0 93 332-446 4-97 (735)
432 PF01408 GFO_IDH_MocA: Oxidore 50.2 23 0.00051 30.2 4.0 91 332-443 1-91 (120)
433 KOG2711 Glycerol-3-phosphate d 50.2 62 0.0013 35.1 7.8 96 332-437 22-129 (372)
434 cd08301 alcohol_DH_plants Plan 50.1 77 0.0017 32.6 8.5 35 329-374 186-220 (369)
435 TIGR03315 Se_ygfK putative sel 50.0 18 0.00039 43.7 4.3 34 330-375 536-569 (1012)
436 PRK06841 short chain dehydroge 49.9 27 0.00059 33.4 4.8 36 328-375 12-48 (255)
437 PRK11101 glpA sn-glycerol-3-ph 49.9 20 0.00042 39.9 4.3 33 331-375 6-38 (546)
438 TIGR03364 HpnW_proposed FAD de 49.9 19 0.00041 36.8 4.0 31 333-375 2-32 (365)
439 cd04951 GT1_WbdM_like This fam 49.8 1.4E+02 0.003 29.3 9.8 37 402-443 255-291 (360)
440 PF00743 FMO-like: Flavin-bind 49.6 14 0.0003 41.4 3.1 21 332-352 2-22 (531)
441 PRK06834 hypothetical protein; 49.5 21 0.00045 39.2 4.4 35 330-376 2-36 (488)
442 PRK11559 garR tartronate semia 49.5 64 0.0014 32.4 7.6 32 332-375 3-34 (296)
443 PF06690 DUF1188: Protein of u 49.5 31 0.00066 35.6 5.2 90 326-450 39-129 (252)
444 PRK13369 glycerol-3-phosphate 49.5 18 0.0004 39.5 4.0 32 332-375 7-38 (502)
445 PRK11154 fadJ multifunctional 49.3 1.7E+02 0.0036 34.1 11.7 88 408-503 413-508 (708)
446 TIGR00658 orni_carb_tr ornithi 49.2 1.4E+02 0.0031 31.1 10.2 113 289-419 107-224 (304)
447 PRK13394 3-hydroxybutyrate deh 48.9 55 0.0012 31.3 6.7 36 328-375 4-40 (262)
448 PLN02852 ferredoxin-NADP+ redu 48.8 12 0.00026 41.7 2.4 42 324-375 19-60 (491)
449 PRK08132 FAD-dependent oxidore 48.7 20 0.00042 39.5 4.1 22 331-352 23-44 (547)
450 COG4017 Uncharacterized protei 48.5 46 0.001 33.7 6.2 92 327-450 41-132 (254)
451 TIGR01317 GOGAT_sm_gam glutama 48.5 22 0.00049 38.9 4.5 34 330-375 142-175 (485)
452 TIGR01408 Ube1 ubiquitin-activ 48.3 16 0.00034 44.2 3.5 39 327-376 20-58 (1008)
453 PRK06138 short chain dehydroge 48.3 33 0.00071 32.6 5.1 36 328-375 2-38 (252)
454 TIGR02360 pbenz_hydroxyl 4-hyd 48.3 22 0.00047 37.4 4.2 21 332-352 3-23 (390)
455 PRK00048 dihydrodipicolinate r 48.3 1E+02 0.0023 31.0 8.8 88 332-444 2-90 (257)
456 PRK05868 hypothetical protein; 48.2 22 0.00048 37.2 4.2 21 332-352 2-22 (372)
457 COG0562 Glf UDP-galactopyranos 48.1 21 0.00045 38.5 3.9 34 333-378 3-36 (374)
458 COG0665 DadA Glycine/D-amino a 48.0 26 0.00057 35.7 4.6 37 330-378 3-39 (387)
459 PRK05249 soluble pyridine nucl 47.8 24 0.00053 37.6 4.5 34 331-376 5-38 (461)
460 PRK00141 murD UDP-N-acetylmura 47.8 24 0.00053 38.4 4.6 26 328-353 12-37 (473)
461 COG1252 Ndh NADH dehydrogenase 47.6 19 0.0004 39.4 3.6 35 331-375 3-37 (405)
462 PF04320 DUF469: Protein with 47.6 16 0.00035 32.8 2.6 33 253-285 27-62 (101)
463 PRK06126 hypothetical protein; 47.3 23 0.00051 38.8 4.4 35 329-375 5-39 (545)
464 COG1086 Predicted nucleoside-d 47.3 30 0.00066 39.5 5.3 77 327-421 246-335 (588)
465 PRK09897 hypothetical protein; 47.3 26 0.00056 39.4 4.8 33 333-375 3-35 (534)
466 PF03486 HI0933_like: HI0933-l 47.1 20 0.00043 38.9 3.7 31 333-375 2-32 (409)
467 PRK06182 short chain dehydroge 47.0 31 0.00067 33.7 4.8 77 330-422 2-85 (273)
468 TIGR00562 proto_IX_ox protopor 46.9 12 0.00026 39.6 2.0 37 332-368 3-40 (462)
469 PRK00683 murD UDP-N-acetylmura 46.9 92 0.002 33.3 8.6 113 331-485 3-115 (418)
470 COG1893 ApbA Ketopantoate redu 46.7 58 0.0013 33.9 6.9 100 332-453 1-108 (307)
471 PRK07190 hypothetical protein; 46.6 27 0.00058 38.4 4.7 33 331-375 5-37 (487)
472 PRK11730 fadB multifunctional 46.5 22 0.00047 41.2 4.2 85 408-500 416-508 (715)
473 PRK13748 putative mercuric red 46.3 22 0.00048 39.1 4.0 34 330-375 97-130 (561)
474 cd01974 Nitrogenase_MoFe_beta 46.1 21 0.00045 38.6 3.7 104 319-449 291-405 (435)
475 PRK04284 ornithine carbamoyltr 46.0 1.3E+02 0.0029 31.9 9.6 110 292-419 116-232 (332)
476 PRK12562 ornithine carbamoyltr 46.0 1.3E+02 0.0028 32.0 9.5 138 262-419 90-233 (334)
477 PRK06183 mhpA 3-(3-hydroxyphen 45.9 23 0.0005 38.9 4.1 23 330-352 9-31 (538)
478 PRK06617 2-octaprenyl-6-methox 45.8 22 0.00048 36.9 3.8 20 333-352 3-22 (374)
479 cd05188 MDR Medium chain reduc 45.8 54 0.0012 30.9 6.1 47 317-375 121-167 (271)
480 PRK09186 flagellin modificatio 45.7 21 0.00046 34.0 3.4 35 329-375 2-37 (256)
481 PRK06545 prephenate dehydrogen 45.6 58 0.0013 34.3 6.8 22 332-353 1-22 (359)
482 PF02558 ApbA: Ketopantoate re 45.5 30 0.00066 30.9 4.1 99 334-449 1-104 (151)
483 COG1064 AdhP Zn-dependent alco 45.5 1.6E+02 0.0034 31.7 10.0 133 306-471 141-284 (339)
484 TIGR01082 murC UDP-N-acetylmur 45.4 39 0.00085 36.3 5.6 110 333-485 1-112 (448)
485 COG0771 MurD UDP-N-acetylmuram 45.2 1.2E+02 0.0026 33.8 9.3 116 328-485 4-123 (448)
486 PRK12570 N-acetylmuramic acid- 45.1 57 0.0012 33.9 6.5 37 411-449 127-165 (296)
487 PRK04663 murD UDP-N-acetylmura 45.1 80 0.0017 33.9 7.9 117 329-485 4-121 (438)
488 PLN02927 antheraxanthin epoxid 45.0 20 0.00042 41.6 3.4 26 328-353 78-103 (668)
489 COG3380 Predicted NAD/FAD-depe 45.0 24 0.00053 37.3 3.8 31 333-375 3-33 (331)
490 PRK08219 short chain dehydroge 44.9 79 0.0017 29.4 7.0 71 332-422 4-82 (227)
491 PLN02172 flavin-containing mon 44.8 26 0.00055 38.5 4.2 36 329-376 202-237 (461)
492 CHL00076 chlB photochlorophyll 44.8 30 0.00064 38.6 4.7 80 326-419 300-382 (513)
493 PRK06115 dihydrolipoamide dehy 44.7 28 0.00061 37.7 4.4 32 332-375 4-35 (466)
494 cd05279 Zn_ADH1 Liver alcohol 44.5 1.9E+02 0.0042 29.8 10.4 43 321-374 174-216 (365)
495 PLN02576 protoporphyrinogen ox 44.3 14 0.00031 39.6 2.2 35 331-367 12-46 (496)
496 TIGR01692 HIBADH 3-hydroxyisob 44.3 68 0.0015 32.5 6.9 28 336-375 1-28 (288)
497 PTZ00367 squalene epoxidase; P 44.2 58 0.0012 36.9 6.9 30 323-352 22-54 (567)
498 cd08231 MDR_TM0436_like Hypoth 44.0 56 0.0012 33.3 6.3 49 315-374 162-210 (361)
499 PRK12809 putative oxidoreducta 44.0 30 0.00066 39.2 4.8 35 330-376 309-343 (639)
500 PRK05441 murQ N-acetylmuramic 44.0 51 0.0011 34.3 6.0 37 411-449 131-169 (299)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.1e-196 Score=1530.87 Aligned_cols=467 Identities=64% Similarity=1.031 Sum_probs=459.8
Q ss_pred ccccc-cccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhccCCCchhHHHHhhhhhhhh
Q 010154 41 LVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERN 119 (516)
Q Consensus 41 ~~~~~-~~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~N 119 (516)
...+| ..++.+|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++|++.+++++++||+||+||++||+||
T Consensus 19 ~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rN 98 (582)
T KOG1257|consen 19 RITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRN 98 (582)
T ss_pred cccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh
Confidence 33444 66789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhccccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCC
Q 010154 120 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDL 199 (516)
Q Consensus 120 e~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDl 199 (516)
|+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++|||||||||||||||
T Consensus 99 erLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDl 178 (582)
T KOG1257|consen 99 ERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDL 178 (582)
T ss_pred hHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeee
Q 010154 200 GCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLI 279 (516)
Q Consensus 200 G~~GmgI~~GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lI 279 (516)
|++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+||+|++|++||+|+||||+||+++|||+++|
T Consensus 179 G~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lI 258 (582)
T KOG1257|consen 179 GVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLI 258 (582)
T ss_pred ccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcC
Q 010154 280 QFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 359 (516)
Q Consensus 280 q~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G 359 (516)
|||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |
T Consensus 259 qFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-G 337 (582)
T KOG1257|consen 259 QFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-G 337 (582)
T ss_pred EehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCC
Q 010154 360 APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 439 (516)
Q Consensus 360 ~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er 439 (516)
+|+|||+|||||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|+++|+|||||||+|+++|||
T Consensus 338 l~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~er 417 (582)
T KOG1257|consen 338 LSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNER 417 (582)
T ss_pred CCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCC
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHHH
Q 010154 440 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFLL 508 (516)
Q Consensus 440 PIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~~ 508 (516)
||||||||||+++||||||||+||+|||||||||||+||+++||+++|||+||+|+|||||||+||+..
T Consensus 418 PiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 418 PIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred ceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.8e-188 Score=1497.33 Aligned_cols=460 Identities=73% Similarity=1.140 Sum_probs=453.7
Q ss_pred ccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhccCCCchhHHHHhhhhhhhhhhhhHhhhh
Q 010154 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (516)
Q Consensus 49 ~~~G~~ll~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (516)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCCccccch
Q 010154 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (516)
Q Consensus 129 ~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~~ 208 (516)
+|++|+||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCch
Q 010154 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (516)
Q Consensus 209 GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 288 (516)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 289 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
||+||+|||++||||||||||||+|+|||++||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987679999999999
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
|||||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHHH
Q 010154 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFLL 508 (516)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~~ 508 (516)
|++|||||||||+||+|+|||||||||+||+|+||+++|||+||+|||||||||++++..
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a 498 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGA 498 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999998753
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1e-187 Score=1491.78 Aligned_cols=459 Identities=48% Similarity=0.836 Sum_probs=450.4
Q ss_pred ccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhccCCCchhHHHHhhhhhhhhhhhhHhh
Q 010154 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (516)
Q Consensus 47 ~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (516)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCCcccc
Q 010154 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (516)
Q Consensus 127 l~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (516)
+++|+||+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCC
Q 010154 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (516)
Q Consensus 207 ~~GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (516)
|+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhccc
Q 010154 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (516)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (516)
+|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 010154 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (516)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~---------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (516)
+||||||++|||+++|.+ |+++|++||++.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999965 999999999975543 6899999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHHH
Q 010154 438 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFLL 508 (516)
Q Consensus 438 erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~~ 508 (516)
+|||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++.
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a 479 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGA 479 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2e-187 Score=1488.61 Aligned_cols=461 Identities=50% Similarity=0.817 Sum_probs=451.7
Q ss_pred cccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhccCCCchhHHHHhhhhhhhhhhhhHh
Q 010154 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (516)
Q Consensus 46 ~~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (516)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCCccc
Q 010154 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (516)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (516)
++++|+|||||||||||||+||++||++||+|||||+|++|||+|+++|+|||.++|++||||||||||||||+|++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCC
Q 010154 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (516)
Q Consensus 206 I~~GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~ 285 (516)
||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcc
Q 010154 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (516)
Q Consensus 286 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 365 (516)
++|||++|+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCeEEEEcCCCcccCCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCc
Q 010154 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 440 (516)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (516)
++||||||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999963 33 57999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHHH
Q 010154 441 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFLL 508 (516)
Q Consensus 441 IIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~~ 508 (516)
|||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||++++..
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a 478 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQP 478 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998753
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.6e-104 Score=821.10 Aligned_cols=344 Identities=36% Similarity=0.534 Sum_probs=313.6
Q ss_pred cccHHHHHHHHHHHhccCCC-chhHHHHhhhhhhhhhhhhHhhhhhccccccCcccchhHHHHHHHHhhhhcCCCccccc
Q 010154 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (516)
Q Consensus 85 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis 163 (516)
++|+| |.+|.+.++....+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999888 99999999 899999999999999999999999999999999998777764
Q ss_pred ccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCC-CccccchhhHHHHHHhcCCCCCCeeeEEeecCCCchhcccC
Q 010154 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (516)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~GmgI~~GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~D 242 (516)
.++.++++|+|||||||||||||||+ .||||||||++|||+||||| ++||+||+||+||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 56777889999999999999999995 68999999999999999999 9999999999876
Q ss_pred ccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHH--cCCCceeccCCcchHHHHHHHHHH
Q 010154 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY--GTTHLVFNDDIQGTASVVLAGVVA 320 (516)
Q Consensus 243 p~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ry--r~~~~~FnDDiQGTaaV~LAgll~ 320 (516)
+++||++++++||. |++||++.|+||.+++++ +.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999988 999999999999887755 569999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCcc-CCchhchhhcc-ccC
Q 010154 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 398 (516)
Q Consensus 321 Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~-~l~~~k~~~A~-~~~ 398 (516)
|+|++|++|+|+||||+|||+||+|||++|..+|++ ++|||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987544 3899999999999999975 36777777775 444
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCce
Q 010154 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF 478 (516)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv 478 (516)
...+ .+++. +||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+||||
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----- 325 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----- 325 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC-----
Confidence 4443 44555 59999999998 899999999999 469999999999 9999999999999999999996
Q ss_pred eeCCEEeccccccceeecccchHHHHHHHH
Q 010154 479 EYNGKVFVPGQVYNHNHFAFAKIPIIIFLL 508 (516)
Q Consensus 479 ~~~Grt~~p~Q~NN~yiFPGiglg~il~~~ 508 (516)
+++|||+||+|+|||||+|++.++-
T Consensus 326 -----sd~PnQvNNvL~FPgIfrGaLd~rA 350 (432)
T COG0281 326 -----SDYPNQVNNVLIFPGIFRGALDVRA 350 (432)
T ss_pred -----CCCcccccceeEcchhhhhhHhhcc
Confidence 6777799999999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-98 Score=831.62 Aligned_cols=300 Identities=29% Similarity=0.487 Sum_probs=278.6
Q ss_pred ccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCCc-cccchhh
Q 010154 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (516)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~~GK 210 (516)
.++|+++|||||+++|++ |+++|+++| .|+.|.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 355999999999999999 789999987 6777888899999999999999999997 9999999
Q ss_pred HHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHH
Q 010154 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (516)
Q Consensus 211 l~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 290 (516)
++|||+||||| ++| +|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~~d----i~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---VFD----IEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---ccc----cccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 555 45555 577 6888 999999999988 999999999999
Q ss_pred HHHHHHcC--CCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 291 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 799999999999999999999999999999999999999999999999999976 488754 9
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
||||||+|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8899999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
| ||||||||++ |+|++||||| |+++|||+||+|+|||||+|++..+
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~ 336 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVG 336 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcC
Confidence 9 8999999987 9999999997 7999999999999999999999765
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1e-97 Score=827.15 Aligned_cols=299 Identities=28% Similarity=0.440 Sum_probs=278.1
Q ss_pred ccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCCc-cccchhh
Q 010154 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (516)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~~GK 210 (516)
.++|+++|||||+++|++ |+++|+++| .|+.++|.|+|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 355999999999999999 679998888 7788999999999999999999999997 9999999
Q ss_pred HHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCC-eeeEeeeCCCchH
Q 010154 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (516)
Q Consensus 211 l~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 289 (516)
++|||+||||| ++|||+| |+ || ||||++|+..| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 6666555 44 54 88888888888 77 7899999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 38873 7
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 8999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 448 Pt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
|| ||||||||++||+| |||||| |+++|||+||+|+|||||+|++..+
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~ 340 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVG 340 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcC
Confidence 99 89999999999998 999999 7999999999999999999999765
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7e-97 Score=817.39 Aligned_cols=299 Identities=30% Similarity=0.497 Sum_probs=277.0
Q ss_pred ccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceecCCCCCCC-ccccchhh
Q 010154 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (516)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~~GK 210 (516)
.++|+++|||||+++|++ |+++|+++| .++.+++.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY--------------KYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc--------------ccccCCcEEEEEccchhhccccccccccCccHHHHH
Confidence 355999999999999996 789999999 455666779999999999999999999 79999999
Q ss_pred HHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCe-eeEeeeCCCchH
Q 010154 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 289 (516)
Q Consensus 211 l~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIq~EDf~~~~a 289 (516)
++|||+||||| ++|||+| |+ | +||||++|+..| |.. .||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 6666555 44 2 799999999999 664 999999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||.. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999975 89999999999999999999999999999999999999999999999999986 3887 68
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
||||||++|||+++|.++|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 445799999998 999999999 8899999999998 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 448 Pt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
|| ||||||||++||+| +||||| |+++|||+||+|+|||||+|++..+
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~ 332 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVG 332 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcC
Confidence 99 89999999999999 999999 7999999999999999999999765
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.9e-83 Score=607.62 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred hhhhhhhhHhhhhhccccccCcccchhHHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCcceec
Q 010154 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (516)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (516)
|++||+|||+++.+|+||+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhhHHHHHHhcCCCCCCeeeEEeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCC
Q 010154 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (516)
Q Consensus 196 LGDlG~~GmgI~~GKl~LY~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp 275 (516)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++||||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeeCCCchHHHHHHHHc
Q 010154 276 KVLIQFEDFANHNAFELLAKYG 297 (516)
Q Consensus 276 ~~lIq~EDf~~~~af~iL~ryr 297 (516)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.9e-79 Score=607.12 Aligned_cols=199 Identities=50% Similarity=0.823 Sum_probs=179.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 307 iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
|||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+|||++||||+|++|||+.+|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 387 ~~~k~~~A~~~~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
+++|++|||+.++. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 464 KGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~ 202 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSR 202 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCT
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecC
Confidence 99999999999999999999999999999999999999999875
No 11
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.6e-77 Score=598.40 Aligned_cols=199 Identities=57% Similarity=0.904 Sum_probs=193.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 307 iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
|||||+|+|||++||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||++||||+|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 010154 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 464 (516)
Q Consensus 387 ~~~k~~~A~~~~--~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~ 464 (516)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 465 GRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 465 G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
|+|||||||||+||+|+||+++||||||+|+|||||||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~ 201 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSG 201 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcC
Confidence 9999999999999999999999999999999999999999875
No 12
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=3.7e-77 Score=590.31 Aligned_cols=199 Identities=50% Similarity=0.706 Sum_probs=193.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 307 iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999965 9
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 387 ~~~k~~---~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
+++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 464 KGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
+|||||||||||+||+|+||+++|+|+||+|||||||||+++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~ 202 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCR 202 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhc
Confidence 99999999999999999999999999999999999999999875
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=7.4e-44 Score=346.69 Aligned_cols=172 Identities=38% Similarity=0.486 Sum_probs=157.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 307 iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
|||||+|++||+++|++..|++++|+||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3876 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 387 ~~~k~~~A~~~--~~~-~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 378899986 999999999 7899999999997 799999999999 89999999999
Q ss_pred CCcEEEecCCCCCceeeCCEEeccccccceeecccchHHHHHHH
Q 010154 464 KGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKIPIIIFL 507 (516)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGiglg~il~~ 507 (516)
|..||||| +++.|+|+||+|||||||||++++.
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~ 175 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVR 175 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcC
Confidence 55599999 6899999999999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.90 E-value=2e-08 Score=83.99 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998764 2 267999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
|++|++++.++.|+++ .|+..+++|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999989888 445556899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.96 E-value=0.00057 Score=73.67 Aligned_cols=159 Identities=18% Similarity=0.252 Sum_probs=105.9
Q ss_pred CCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHHH---------------------HHHHc-------CCCcee
Q 010154 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (516)
Q Consensus 252 R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~i---------------------L~ryr-------~~~~~F 303 (516)
..+-|||...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777766 345565555 4444433333 13443 379999
Q ss_pred c----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEc
Q 010154 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (516)
Q Consensus 304 n----------DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (516)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6778898777666654 346678999999999999999999888542 52 688888
Q ss_pred CCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 374 SKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 374 s~GLi~~~R~~~l~~~k~~~A~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.+ ..|. ..|. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~d----p~ra--------~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VD----PICA--------LQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CC----chhh--------HHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 63 1121 1111 11123468888885 99999988877789999999986 344666555554
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.54 E-value=0.00039 Score=74.15 Aligned_cols=126 Identities=24% Similarity=0.365 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 308 QGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
.+..+|+.+++--|.+..| ++.+.+++|+|+|..|..+++.+.. .|+ .+++++|+.. .|. .
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~ra---~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ERA---E 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HHH---H
Confidence 5666777777766666665 4889999999999999999998854 254 5788888731 221 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCCCCHH
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPTSQSECTAE 457 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt~~~Ectpe 457 (516)
...+.+....-...++.+++.. .|++|-+++.+ ..+++++++.+.....+| +|+-+++|- ++.|+
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~~ 285 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDPA 285 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCChh
Confidence 1111111111112467788876 99999987544 578999999875433356 889999996 66664
No 17
>PLN02477 glutamate dehydrogenase
Probab=97.52 E-value=0.0048 Score=66.38 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=128.4
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHH--HHHHHHcC----CCcee----------ccCCcchHHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLA 316 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 316 (516)
.+..|-..+...|++++.+.-||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45667788999999999999998655556677653221 15567753 11111 2333458888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEE-EEcCCCcccCCCccCCchhch-hhc
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~-~~A 394 (516)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. +++ +.|++|-|+.... |+..+. .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8899999999999999999999999999999998653 53 566 8999999998763 543221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010154 395 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (516)
Q Consensus 395 ~~~------~~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (516)
+.. +. .-+-.+.+. .+.||||=+.. ++.+|++.+..+ .-.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233333 47999996664 669999999987 5889999999 65 344 455554
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.37 E-value=0.0059 Score=65.64 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=89.4
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 789987 777899977776654 456777999999999999999999998753 252 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
++++|.+- .| ...|+ ..-...++.|+++. .|++|-+++..++++.+.++.|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887631 11 11111 11122357888875 89999888877888888888886 4567776776
Q ss_pred CCCCCCCCHHHH
Q 010154 448 PTSQSECTAEEA 459 (516)
Q Consensus 448 Pt~~~Ectpe~A 459 (516)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 65 56665544
No 19
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.35 E-value=0.0099 Score=64.69 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=130.7
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHH--HHHHHHcCC---C-------cee----ccCCcchHHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-------LVF----NDDIQGTASVVLA 316 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~iL~ryr~~---~-------~~F----nDDiQGTaaV~LA 316 (516)
.+..|-..|...|+.++.+.+||..=|-=+|++..-.- -+.+.|+.- . |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45568888999999999999999887778888743222 266777631 1 211 1233467777888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEE-cCCCcccCCCccCCchh-----c
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 390 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~-----k 390 (516)
++..+++..|.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+...+ |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 889999999999999999999999999999999964 353 45555 99999998753 4432 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010154 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (516)
Q Consensus 391 ~-------~~A~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (516)
. .|... ....-+- +.+..++.||||=++. .+..|++-...+-. +.-.||.=-+| |+ -+| +++.+.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001112 2244567999997766 67999999999843 35679999998 76 244 455554
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.30 E-value=0.0031 Score=62.15 Aligned_cols=133 Identities=21% Similarity=0.257 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +.+-+.|++|-++.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999988887 4 4332
Q ss_pred c-hhhccccCCCCC-------HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 010154 390 K-KPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (516)
Q Consensus 390 k-~~~A~~~~~~~~-------L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~ 460 (516)
+ ..++++...... =.+.+-.++.||||=++. .+..|++..+.+. -++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~----a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKLK----AKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhcC----ccEEEeCCCCCCC-H--HHHHHH
Confidence 1 222221111100 013344568999997777 5599999999984 789998888 874 2 466666
Q ss_pred cccCC
Q 010154 461 TWSKG 465 (516)
Q Consensus 461 ~wt~G 465 (516)
+ ..|
T Consensus 140 ~-~~G 143 (217)
T cd05211 140 H-ERG 143 (217)
T ss_pred H-HCC
Confidence 5 346
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.26 E-value=0.0016 Score=66.82 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=87.0
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhccc
Q 010154 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (516)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (516)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 46677777777654444 34456666666666665555 8999999999999999999888652 4 2
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 010154 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 444 (516)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 444 (516)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 222 111112221111112357788876 8999999887654 67666654322 2347788
Q ss_pred cCCCC
Q 010154 445 LSNPT 449 (516)
Q Consensus 445 LSNPt 449 (516)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.22 E-value=0.0018 Score=69.18 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
+..+|+.+++--|.+..| ++.+.+++|+|||..|..++..+.. .|. ++++++|+. ..|. ..
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~ra---~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LERA---EE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHHH---HH
Confidence 355666666655544444 6889999999999999999988754 253 678988874 2221 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcC--CCCcEEEEcCCCCCCCCCCHH
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEKPLILALSNPTSQSECTAE 457 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~--~erPIIFaLSNPt~~~Ectpe 457 (516)
..+.+........++.+++.. +|++|-+++.+ ..+++++++.+.+. ....+|+=||+|- ++.|+
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr---did~~ 288 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR---DIEPE 288 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC---CCccc
Confidence 111221111112456777775 89999988654 47899999997532 2346888999996 55553
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.22 E-value=0.0045 Score=66.66 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=94.1
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
.+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 6779999988777665 56778999999999999999999988754 352 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
++++|.+ . .+...|+.. -...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~--------~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----P--------ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----h--------hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 2 222233321 112346788875 89999999888889999898886 4567766777
Q ss_pred CCCCCCCCHHHHhc
Q 010154 448 PTSQSECTAEEAYT 461 (516)
Q Consensus 448 Pt~~~Ectpe~A~~ 461 (516)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7898887654
No 24
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.14 E-value=0.029 Score=61.20 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=130.6
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHH---HHHHHcC----CCceecc---CC-------cchHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 315 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr~----~~~~FnD---Di-------QGTaaV~L 315 (516)
.+..|-..+.-.||+.+.+..||+.=|-=.|++. ++.+ +.+.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4555788899999999998889988777778774 3322 5667753 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchh---
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP--- 392 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~--- 392 (516)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .++..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88899999999999999999999999999999998653 63 5577889999998865 35544311
Q ss_pred ------------hccccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 010154 393 ------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (516)
Q Consensus 393 ------------~A~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe 457 (516)
+....+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11110110 01122 23467999997766 46999999999953 24678998998 653 33 45
Q ss_pred HHhc
Q 010154 458 EAYT 461 (516)
Q Consensus 458 ~A~~ 461 (516)
+.+.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 25
>PLN02494 adenosylhomocysteinase
Probab=97.06 E-value=0.0069 Score=66.38 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|+.+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678776 557899888888777 557778999999999999999999999843 253 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
++++|.+.. | ...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~----r--------~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI----C--------ALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch----h--------hHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 787776311 1 111111 0112368888876 99999877777788999999997 5778888888
Q ss_pred CCCCCCCCHHHHhcc
Q 010154 448 PTSQSECTAEEAYTW 462 (516)
Q Consensus 448 Pt~~~Ectpe~A~~w 462 (516)
+. .|+.-++..++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 76 68877665554
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.01 E-value=0.0049 Score=58.62 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=69.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A 394 (516)
.+.+-.++....+|++.+++++|+|. +|..+|+.|... | .++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECC-------------------
Confidence 33344555566789999999999998 599999988652 4 258888864
Q ss_pred cccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 395 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 395 ~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
..+|.+.++. +|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357888887 99999999988899999764 356889999986
No 27
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.98 E-value=0.00056 Score=61.91 Aligned_cols=101 Identities=26% Similarity=0.432 Sum_probs=67.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~---~~~~~~L 403 (516)
.++++.|++|+|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999999998888663 64 789999973 333 22222333110 1123456
Q ss_pred HHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 404 LDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 404 ~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.+.++. .|++|-+++.+ -.++++.++..... ..+||=||+|-
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr 112 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPR 112 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCC
Confidence 677776 99999998766 37889888754311 24999999996
No 28
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.94 E-value=0.034 Score=60.61 Aligned_cols=181 Identities=16% Similarity=0.106 Sum_probs=125.5
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchH--HHHHHHHcC---C-Ccee----------ccCCcchHHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~---~-~~~F----------nDDiQGTaaV~LA 316 (516)
.+-.|...+.-.||..+.+.+||+.-|-=+|++..-. --+.+.|+. . .-++ .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4566778899999999999999998888888876332 226667753 1 1233 2333558888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~ 396 (516)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8999999999999999999999999999999999764 53 3455699999988764 365544332111
Q ss_pred -----cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 010154 397 -----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (516)
Q Consensus 397 -----~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (516)
.. .. -+-.+ +-.++.||||=+.. .+.+|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 00 00 01112 21246899996666 5699999999985310 137777887 64
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.88 E-value=0.0083 Score=61.33 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 307 iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
+..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+... |. +++++|++. .+ +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~~---~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----AD---L 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---H
Confidence 34555666667778888888999999999999999999999998642 52 588888741 11 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 010154 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKG 465 (516)
Q Consensus 387 ~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~wt~G 465 (516)
...+ .+....-...+|.+.++. .|++|=+. ..+.++++.++.|. +..+|+=+|. | -++..+.|.+ -.-
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P---g~tdf~~Ak~-~G~ 256 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP---GGTDFEYAKK-RGI 256 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC---CCCCHHHHHH-CCC
Confidence 1110 000011122457788875 99999755 34588999998886 4667886664 5 4667765544 345
Q ss_pred cEEEecCCC
Q 010154 466 RAIFASGSP 474 (516)
Q Consensus 466 ~aifAsGSP 474 (516)
+++.+-|-|
T Consensus 257 ~a~~~~glP 265 (287)
T TIGR02853 257 KALLAPGLP 265 (287)
T ss_pred EEEEeCCCC
Confidence 778888865
No 30
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.83 E-value=0.0041 Score=67.08 Aligned_cols=134 Identities=25% Similarity=0.410 Sum_probs=90.5
Q ss_pred chHHHHHHHHcCCCceeccCC-cchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcc
Q 010154 287 HNAFELLAKYGTTHLVFNDDI-QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (516)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDi-QGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 365 (516)
..||..=+|.|.+- +| .|-.+|.-|++--|-++.|. |++.+++|+|||..|-.+|+.|... |+
T Consensus 139 qkAi~~gKrvRseT-----~I~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~----- 202 (414)
T COG0373 139 QKAISVGKRVRSET-----GIGKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV----- 202 (414)
T ss_pred HHHHHHHHHhhccc-----CCCCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC-----
Confidence 45666667777521 11 23345555555566666655 9999999999999999999988764 64
Q ss_pred cCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHHHhcccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCc
Q 010154 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKP 440 (516)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~eav~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erP 440 (516)
++|+++++ |..|.. .+|+. .-....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+..++=
T Consensus 203 -~~i~IaNR----T~erA~-------~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~ 268 (414)
T COG0373 203 -KKITIANR----TLERAE-------ELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRL 268 (414)
T ss_pred -CEEEEEcC----CHHHHH-------HHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCe
Confidence 78998887 344322 23332 1223567778876 89988654 444689999998765444444
Q ss_pred EEEEcCCCCC
Q 010154 441 LILALSNPTS 450 (516)
Q Consensus 441 IIFaLSNPt~ 450 (516)
+||=++||-.
T Consensus 269 livDiavPRd 278 (414)
T COG0373 269 LIVDIAVPRD 278 (414)
T ss_pred EEEEecCCCC
Confidence 9999999963
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.82 E-value=0.0073 Score=59.89 Aligned_cols=132 Identities=25% Similarity=0.295 Sum_probs=93.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 308 QGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ ++
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577778888889999999999999999999999999999998663 53 34559999999998763 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 010154 388 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (516)
Q Consensus 388 ~~k~-~~A~~~~~------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe 457 (516)
.... .+.+.... . -+-.+ +-..+.||||=++. ++..|++.+..+. -++|.--+| |.+ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l~----a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRIK----AKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhce----eeEEEeCCCCCCC-HH--HH
Confidence 3221 11111100 0 12223 33458999998874 6799999999984 889999999 653 33 44
Q ss_pred HHhc
Q 010154 458 EAYT 461 (516)
Q Consensus 458 ~A~~ 461 (516)
+.++
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5544
No 32
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.72 E-value=0.13 Score=56.33 Aligned_cols=188 Identities=17% Similarity=0.185 Sum_probs=130.4
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHH---HHHHHcC---CC-ceecc----------CCcchHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFND----------DIQGTASVVL 315 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr~---~~-~~FnD----------DiQGTaaV~L 315 (516)
.+..|-..|...||..+.+..||+.-|-=.|++. ++.+ +.+.|+. .. .|+-. --..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 3556677899999999999999999999999984 3333 4555642 11 22211 1224888788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEE-EEcCCCcccCCCccCCchhch---
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~--- 391 (516)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88899999999999999999999999999999998763 53 455 999999999875 3554332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCH
Q 010154 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTA 456 (516)
Q Consensus 392 ------------~~A~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectp 456 (516)
.|+...+..+ +-.+ +-.++.||++=+.. .+.+|++-.+.+-++ .-.+|.=-+| |++ +| +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~~-~ak~V~EgAN~p~t-~e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIKN-GCKLVAEGANMPTT-IE--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHHc-CCeEEEecCCCCCC-HH--H
Confidence 1211000000 1111 22367999998777 469999999988532 4668888888 764 23 4
Q ss_pred HHHhc
Q 010154 457 EEAYT 461 (516)
Q Consensus 457 e~A~~ 461 (516)
++.++
T Consensus 362 ~~~L~ 366 (454)
T PTZ00079 362 THLFK 366 (454)
T ss_pred HHHHH
Confidence 55554
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.69 E-value=0.014 Score=59.80 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchh
Q 010154 313 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 392 (516)
Q Consensus 313 V~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~ 392 (516)
++-+++..|++..+.++...|++|+|+|.+|..++..+.. .| -+++++|++ .. +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~----~~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARK----SA--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECC----HH--------HHH
Confidence 3334566778888889999999999999999999988854 25 268888885 11 111
Q ss_pred hccc----cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-cE
Q 010154 393 WAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RA 467 (516)
Q Consensus 393 ~A~~----~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G-~a 467 (516)
+++. .-...++.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788875 999998754 4578999999997 466777555432 2455544433 34 45
Q ss_pred EEecCCC
Q 010154 468 IFASGSP 474 (516)
Q Consensus 468 ifAsGSP 474 (516)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5567754
No 34
>PLN00203 glutamyl-tRNA reductase
Probab=96.67 E-value=0.0057 Score=67.58 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~-~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445555666666666664 6999999999999999999887754 353 679998874 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 010154 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPT 449 (516)
Q Consensus 388 ~~k~~~A~---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt 449 (516)
.....|-. ...+..++.++++. +|++|.+++.+ .++++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 01123567888876 99999886543 489999999985321 244 566799996
No 35
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.54 E-value=0.015 Score=61.27 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
|+++..+++--|.+..|..|++.+++|.|| |+.|..++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 788888899999999999999999999999 89999999999652 232 678988864 222 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCC-C-CCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-R-TFTKEVIEAMASFNEKP-LILALSNPT 449 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~-g-~Ft~evv~~Ma~~~erP-IIFaLSNPt 449 (516)
.+.++.. ....++.+++.. +|+++-+++.+ . .++++.+ ++| +|+=+|.|-
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPR 249 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPK 249 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCC
Confidence 3333321 223468888886 99999887764 3 2677766 344 556689996
No 36
>PLN00106 malate dehydrogenase
Probab=96.48 E-value=0.023 Score=59.40 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A 394 (516)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887665 59999999 9999999998764 244 35899999865 1111112332211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHH
Q 010154 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAE 457 (516)
Q Consensus 395 ~~~--~~~~~L~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~Ectpe 457 (516)
+-. ...+++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 123567889998 9998866665421 34678888899999999999999982 1225555
Q ss_pred HHhcccCC--cEEEecC
Q 010154 458 EAYTWSKG--RAIFASG 472 (516)
Q Consensus 458 ~A~~wt~G--~aifAsG 472 (516)
.+.+++.= .-+|++|
T Consensus 148 ~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVT 164 (323)
T ss_pred HHHHcCCCCcceEEEEe
Confidence 55554321 3455554
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.47 E-value=0.03 Score=54.29 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC
Q 010154 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~--g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l 386 (516)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -++++.|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35666667777788875 8899999999999999999999988653 5 3688888641 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010154 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (516)
Q Consensus 387 ~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (516)
..++..|.. ... +..+... .+.|+++=++. ++.+|++.++.|. -++|..-+| |++ +..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~--~~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLA--DPRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccC--CHhHHHHHH
Confidence 333333211 111 2233333 36999996555 5799999999994 679999988 763 234555554
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.43 E-value=0.064 Score=59.00 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCCceeccCCcchHHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEE
Q 010154 298 TTHLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (516)
Q Consensus 298 ~~~~~FnDDiQGTaaV~-------LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~ 370 (516)
..+||+|-+---|-++. ++.+=+.+|.++..|++.+++|+|.|..|.++|+.+.. .|. +++
T Consensus 214 L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~Vi 281 (476)
T PTZ00075 214 LLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVV 281 (476)
T ss_pred CCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEE
Confidence 37999986665554433 44445557778899999999999999999999999854 253 577
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 371 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 371 lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
++|++- .+. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 282 V~e~dp----~~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 282 VTEIDP----ICA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EEeCCc----hhH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 776631 110 11000 11112468898886 99999988888899999999997 456766666553
No 39
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.35 E-value=0.073 Score=54.16 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEE-EEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvDs~GLi~~~R~~~l~ 387 (516)
.||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 467667788888899999999999999999999999999998653 53 455 999999999875 354
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 010154 388 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (516)
Q Consensus 388 ~~k~---------------~~A~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (516)
..+. .|....+.. -+-.|. -..+.||||=+.. .+.+|++.+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~-~~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKP-WEVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcch-hcCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 010000000 122232 2457999997765 56999999999843 34789999999 77
Q ss_pred CCCCCCHHHHhc
Q 010154 450 SQSECTAEEAYT 461 (516)
Q Consensus 450 ~~~Ectpe~A~~ 461 (516)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 3455554
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.25 E-value=0.014 Score=62.88 Aligned_cols=131 Identities=17% Similarity=0.305 Sum_probs=79.2
Q ss_pred hHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 288 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 288 ~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
.||+.=+|-|.+.-+ + .|.-+|+-+|+=-|.+.. .++++.|++|+|||.+|-.+|+.|.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 455555555543211 1 122244444444444443 35889999999999999999888754 354 6
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhc-cccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcE-EEE
Q 010154 368 KICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPL-ILA 444 (516)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~~A-~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPI-IFa 444 (516)
+|+++++. .+|...+ ...|. ....+..+|.+++.. .|++|-+++.+ -++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra~~L---a~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKAQKI---TSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHHHHH---HHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 89998883 3332112 12221 111223567777876 99999988765 467877652 4665 467
Q ss_pred cCCCC
Q 010154 445 LSNPT 449 (516)
Q Consensus 445 LSNPt 449 (516)
||+|-
T Consensus 272 LavPR 276 (414)
T PRK13940 272 ISIPQ 276 (414)
T ss_pred eCCCC
Confidence 99995
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.028 Score=57.73 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
..+-.|-.|++..++..+.+++.++++++|+|- +|.++|.+|... | | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 999999998642 4 2 67888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHhc
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 461 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~~Ectpe~A~~ 461 (516)
..+|.+.++. +|++|-+++.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246677775 99999999999999998874 45566654 3663 112566666643
No 42
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.20 E-value=0.09 Score=50.32 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 308 QGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 477777777776 5688999999999999999999999998553 5 367766652
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010154 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (516)
Q Consensus 388 ~~k~~~A~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~ 461 (516)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..-= .-|+.-+...+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeeccccc
Confidence 22211121 22223579999986 99999999988899999999997 55666544432 36888776544
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.017 Score=59.59 Aligned_cols=96 Identities=17% Similarity=0.334 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
+=.-+|-+|++..++..+.+|++.+++++|+|. .|..+|.+|... | ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc-----------
Confidence 345678889999999999999999999999988 999999998642 4 3577787641
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 258888887 99999999999999999874 45677777664
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.98 E-value=0.036 Score=52.43 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
||+.+++.+..+++..|..+++.+++++|+ |..|..+++.+... | .++++++++ ..+ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----HHH---HHH
Confidence 777888888888888899999999999997 99999898887652 3 478888764 111 111
Q ss_pred hchhhcc---------ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 010154 389 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALSNPT 449 (516)
Q Consensus 389 ~k~~~A~---------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er--PIIFaLSNPt 449 (516)
....+.. +.....++.+++++ .|++|-++..+ ..+..... ...+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~----~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLA----WAPKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhh----cccCceeEEEEccCCC
Confidence 1111110 01112345677775 89999877654 44322221 1123 3666666654
No 45
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.96 E-value=0.014 Score=59.52 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch-hchhh
Q 010154 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPW 393 (516)
Q Consensus 315 LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~-~k~~~ 393 (516)
-.|++.+++..+..++.++++++|||.||.+++..|... |+ ++|+++|+. ..|.+.+.. .+..+
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 356778887666678889999999999999999888753 64 679999984 333222211 11111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEccCCC
Q 010154 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (516)
Q Consensus 394 A~-~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (516)
.. ......++.+.++. +|++|.++..|
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 10 01112455666665 89999988655
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.86 E-value=0.028 Score=50.49 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~ 395 (516)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | ..+++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58999999999889999999999999988888887542 3 2578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEEccCCCC------CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 010154 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 449 (516)
Q Consensus 396 ~--~~~~~~L~eav~~vkptvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (516)
. .....++.++++. +|++|-+...+- .|.+. .+ .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~---~~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPS---LL---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHH---Hc---CCCCEEEEcCcCCC
Confidence 1 0123467776665 999998776442 12222 12 3567787775 454
No 47
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.60 E-value=0.027 Score=60.84 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=77.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhc-CCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~-G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~-----~~~L~ 404 (516)
.||+|+||||+ -...|+..+.+.. .++ .+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999995 4444444444322 343 4789999964 44422122222233322 112 25899
Q ss_pred HHhcccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 405 DAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 405 eav~~vkptvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+|+++ +|.+|-. .|.||.|. .++++.|.++++..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 8888822 23344443 38899999999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 010154 451 QSECTAEEAYTWSKGRAIFASG 472 (516)
Q Consensus 451 ~~Ectpe~A~~wt~G~aifAsG 472 (516)
-+.-+-+++++...-++++|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 44555555666333455554
No 48
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.57 E-value=0.023 Score=56.64 Aligned_cols=129 Identities=22% Similarity=0.345 Sum_probs=84.6
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc--cCCCCCHHHHhccc
Q 010154 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (516)
Q Consensus 334 iv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~--~~~~~~L~eav~~v 410 (516)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-.......++.+...++ .. -...+++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99999999987653 41 123689999986411111111132222222 11 1113568899987
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 010154 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (516)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGSP 474 (516)
+|++|=+.+.++. .-+++.+.|.+++.+.+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~- 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT- 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-
Confidence 9999865554322 3578889999999999999999996 77777777774 3455888885
Q ss_pred CCc
Q 010154 475 FDP 477 (516)
Q Consensus 475 f~p 477 (516)
.++
T Consensus 146 ld~ 148 (263)
T cd00650 146 LDP 148 (263)
T ss_pred chH
Confidence 443
No 49
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.54 E-value=0.057 Score=57.03 Aligned_cols=123 Identities=11% Similarity=0.171 Sum_probs=73.3
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHH--HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhc
Q 010154 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (516)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAg--ll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee 364 (516)
..||..=+|-|.+. .| |.++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT-----~I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKG-----GA-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhc-----CC-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 34555555666422 11 334444433 3333 333 56999999999999998888887765 364
Q ss_pred ccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEEc----cCCCCCCCHHHHHHHHcCCC
Q 010154 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 438 (516)
Q Consensus 365 A~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~-eav~-~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~e 438 (516)
++|+++++.-. + .+|.. +. +++. ..+.||+|-. +++.-.++.+.++..- +
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---D 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---C
Confidence 68999888541 1 22221 10 1111 1258999964 3334467777765421 2
Q ss_pred CcEEEEcCCCCCC
Q 010154 439 KPLILALSNPTSQ 451 (516)
Q Consensus 439 rPIIFaLSNPt~~ 451 (516)
| ++|=||+|-.-
T Consensus 255 r-~~iDLAvPRdI 266 (338)
T PRK00676 255 R-IVFDFNVPRTF 266 (338)
T ss_pred c-EEEEecCCCCC
Confidence 4 99999999853
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.48 E-value=0.031 Score=56.81 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=64.2
Q ss_pred CceeccCCcchHHHHHHHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 300 HLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 300 ~~~FnDDiQGTaaV~LAgll~Al~~~g~--~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
..=+|-|- .|++.+++..+. ++++.+++++|||.||-+|+..|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 44456664 467778877663 6889999999999999998887765 364 689999873
Q ss_pred ccCCCccCCchhchhhcccc--CCC---CCHHHHhcccCCcEEEEccCCCCCCCHHHH
Q 010154 378 IVSSRKDSLQHFKKPWAHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVI 430 (516)
Q Consensus 378 i~~~R~~~l~~~k~~~A~~~--~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv 430 (516)
.+|.+.|.+ .|.... ... .++.+++. ++|++|.++..+-.++.+.+
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 333222221 111100 011 12334444 48999999887755555444
No 51
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.42 E-value=0.043 Score=56.14 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=79.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 410 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~~~~L~eav~~v 410 (516)
||.|+|||.+|..+|..++. .|+ ..+|.++|.+-=...+-..+|.+.. .+.... -...+.. .+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhCC-
Confidence 89999999999999998765 254 3579999985222111111122111 111100 0112343 4664
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecCCC
Q 010154 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 474 (516)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAsGSP 474 (516)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||. .+...-+++++.= +-+|++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999977776411 1257788888899999999999997 6777777776421 458888765
No 52
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.41 E-value=0.054 Score=57.25 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=66.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~ 404 (516)
+...+++|+|+|.+|.++|+.+... |. ++.++|++ ..| +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988642 52 58888873 111 11111222111 11123578
Q ss_pred HHhcccCCcEEEEccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCC
Q 010154 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN-PTSQSE 453 (516)
Q Consensus 405 eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E 453 (516)
++++. .|++|.+... +.++|+++++.|. ++.+|+-+|- |....|
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAIDQGGCVE 275 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEecCCCCCcc
Confidence 88875 9999987532 4468999999996 5688888874 333344
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.23 Score=51.43 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++..++..+.+|+..+++++|-|. .|..+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4668889999999999999999999999998 99999999864 24 356777663
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.++|.+.++. +|++|-+.+.++.|+.++|+ +.-+|.=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888987 99999999999999999886 566776665
No 54
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.85 E-value=0.06 Score=55.76 Aligned_cols=127 Identities=14% Similarity=0.257 Sum_probs=80.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhcc
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 409 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~~~~~L~eav~~ 409 (516)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+.. -..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 3679999984211111111122222 221110 011344 45776
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 473 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGS 473 (516)
+|++|=+.+.+ |- +=+++++.|.+++...+|+-.|||. ++....+++++ .-+-+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 99999666553 21 1256788888889999999999996 77777777776 3344777764
Q ss_pred C
Q 010154 474 P 474 (516)
Q Consensus 474 P 474 (516)
-
T Consensus 149 ~ 149 (315)
T PRK00066 149 S 149 (315)
T ss_pred h
Confidence 4
No 55
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.76 E-value=0.045 Score=45.66 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=62.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEE-cCCCcccCCCccCCchhchhhccccCCCC-CHHHHhccc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NLLDAVKVI 410 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~k~~~A~~~~~~~-~L~eav~~v 410 (516)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+..+..++.|... -.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999988764 54 34677755 552 11223333333211 112 79999996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
+|++| ++..+ ..-+++++.+....+..+|..++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66655 5666788888666788999988886
No 56
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.63 E-value=0.066 Score=53.96 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc-------hhhccc--------
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 396 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-------~~~A~~-------- 396 (516)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 5 3688998641 1 111111 111000
Q ss_pred ----cC---CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-CcEE
Q 010154 397 ----HE---PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAI 468 (516)
Q Consensus 397 ----~~---~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~-G~ai 468 (516)
.. ...++.++++. +|++|=+-...-.+.+++++.+.+......|+ .||.+++ .+.++.+..+ ...
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r- 137 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEK- 137 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCccc-
Confidence 01 12578888886 88888543322236677777777665555565 3565544 4444433322 122
Q ss_pred EecCCCCCcee
Q 010154 469 FASGSPFDPFE 479 (516)
Q Consensus 469 fAsGSPf~pv~ 479 (516)
|....||.|+.
T Consensus 138 ~vg~Hf~~p~~ 148 (287)
T PRK08293 138 FLALHFANEIW 148 (287)
T ss_pred EEEEcCCCCCC
Confidence 33357888864
No 57
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.60 E-value=0.071 Score=57.55 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=76.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~-~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~-----~~~L~ 404 (516)
.||+|+||||+ -...++ ..+.+ ...+ ..+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333443 44433 2233 247899999852 22211111111222221 112 25899
Q ss_pred HHhcccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 405 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+|+++ +|.+|-.-.++|. .=.|+++.|.+++...+|+=.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~- 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA- 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH-
Confidence 99998 8888854444431 2237888899999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 010154 451 QSECTAEEAYTWSKGRAIFASG 472 (516)
Q Consensus 451 ~~Ectpe~A~~wt~G~aifAsG 472 (516)
-+..+-+++++ ..-+|++|
T Consensus 148 --~ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 148 --GIVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred --HHHHHHHHHhc-cCCEEeeC
Confidence 46666677777 44466654
No 58
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.38 E-value=0.23 Score=55.17 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=62.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCcc---CC------------chhchh
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL------------QHFKKP 392 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~---~l------------~~~k~~ 392 (516)
.....|++|+|||.+|++.+..... .| | +++.+|.+ ..|.+ .+ ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccc
Confidence 3458999999999999998766543 35 2 47777764 11110 00 001112
Q ss_pred hccccCC-C-----CCHHHHhcccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCH
Q 010154 393 WAHEHEP-V-----NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 456 (516)
Q Consensus 393 ~A~~~~~-~-----~~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectp 456 (516)
|++...+ . ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-.|.=++.+. ...|++.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 3332111 0 01222223 4999999999866 67999999997 445555566642 3335543
No 59
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.15 Score=52.75 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..+-+++..+++++|.| ..|.-+|.++.. .|. .+.+|+++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 356778888889999999999999999999 999999999865 253 35566442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.+|.+.++. +|++|...+.++.+++|+|+ +.-+|.=..
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 247788887 99999999999999999994 455665433
No 60
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.32 E-value=0.1 Score=52.89 Aligned_cols=120 Identities=21% Similarity=0.360 Sum_probs=75.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc----cc-----CCCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH-----EPVNN 402 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~----~~-----~~~~~ 402 (516)
.||.|+|||..|.++|..++.. |+ . .++++|.+ .++ +......+.+ .. ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 5899999999999999987652 54 2 79999982 211 1111111111 00 01235
Q ss_pred HHHHhcccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC---
Q 010154 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 465 (516)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G--- 465 (516)
. +++++ +|++|=+.+.+ | -.-+++++.|.+.+...+++-.|||. .....-+++.+ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 45766 89988333222 2 23456777888888999888889996 56666666665 4
Q ss_pred cEEEecCCCCC
Q 010154 466 RAIFASGSPFD 476 (516)
Q Consensus 466 ~aifAsGSPf~ 476 (516)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56899985443
No 61
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.30 E-value=0.15 Score=52.96 Aligned_cols=124 Identities=18% Similarity=0.300 Sum_probs=77.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHhc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~eav~ 408 (516)
.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...++.-++.+. ..+.... ...+++ ++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l~ 73 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDIA 73 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHhC
Confidence 699999999999999998654 365 23999997432222111011111 1111111 112456 5677
Q ss_pred ccCCcEEEEccCCCCC-------------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcE
Q 010154 409 VIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRA 467 (516)
Q Consensus 409 ~vkptvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~a 467 (516)
+ +|++|=+.+.++. +-.++++.|.+++..-+++--|||. ......+.+.+. -+-
T Consensus 74 ~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~~r 148 (321)
T PTZ00082 74 G--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPKNK 148 (321)
T ss_pred C--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCChhh
Confidence 6 9999965544321 1357788888889887899999996 555666666653 246
Q ss_pred EEecCC
Q 010154 468 IFASGS 473 (516)
Q Consensus 468 ifAsGS 473 (516)
+|++|.
T Consensus 149 viGlgt 154 (321)
T PTZ00082 149 VCGMAG 154 (321)
T ss_pred EEEecC
Confidence 888884
No 62
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.28 E-value=0.069 Score=51.70 Aligned_cols=104 Identities=24% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCC--------ccCCchhchhhcc---
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--------KDSLQHFKKPWAH--- 395 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R--------~~~l~~~k~~~A~--- 395 (516)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ..+. .+++-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 578999999999999999999999775 65 78999998622 1110 0011111111110
Q ss_pred -c----------cCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 396 -E----------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 396 -~----------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
. .... .++.+.++. .|++|.+... .=++.++..++.....|.|++-+
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0111 235555654 7888887642 33556677777777889888654
No 63
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.24 E-value=0.37 Score=44.85 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc
Q 010154 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (516)
Q Consensus 312 aV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (516)
-.+..|++..++..|.+++.++++++|.+. .|.-+|.+|. + .| ..+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC--------------
Confidence 357788999999999999999999999864 4555555554 2 35 3566777631
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 391 ~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
.+|.++++. +|++|-..+..+.|+.|+|+ +.-+|..
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 268889997 99999999999999999986 4556653
No 64
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.23 E-value=0.2 Score=51.85 Aligned_cols=127 Identities=20% Similarity=0.338 Sum_probs=79.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~ea 406 (516)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+--...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999988765 254 25999997421111111012211 1111111 1124566 6
Q ss_pred hcccCCcEEEEccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010154 407 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (516)
+++ +|++|=+.+.+. -+-+++.+.|.+++..-+++-.|||. ......+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 776 899986665442 23458899999999999788789997 555666766653 145888
Q ss_pred cCCC
Q 010154 471 SGSP 474 (516)
Q Consensus 471 sGSP 474 (516)
+|+-
T Consensus 146 ~gt~ 149 (319)
T PTZ00117 146 MAGV 149 (319)
T ss_pred ecch
Confidence 7743
No 65
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.21 E-value=0.11 Score=52.34 Aligned_cols=131 Identities=22% Similarity=0.299 Sum_probs=89.8
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCc
Q 010154 305 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (516)
Q Consensus 305 DDiQGTaaV~LAgll~Al~~~g~~-L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~ 383 (516)
|--+-||-=|..++-.+++..+.. +++.|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|+...+
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC
Confidence 334568888888899999997776 9999999999999999999999774 52 44567799999987543
Q ss_pred cCCchhchhhccccCCCCCHH-----------H--HhcccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-C
Q 010154 384 DSLQHFKKPWAHEHEPVNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-P 448 (516)
Q Consensus 384 ~~l~~~k~~~A~~~~~~~~L~-----------e--av~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-P 448 (516)
-+.+...+...+....+..+. + .+-.++.||||=+ +.++.+|++.+. .+.+ .-+||.--+| |
T Consensus 74 ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p 150 (244)
T PF00208_consen 74 LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGP 150 (244)
T ss_dssp EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSS
T ss_pred chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchh
Confidence 111111111111111011111 1 3445689999988 557799999998 7742 4789999999 5
Q ss_pred C
Q 010154 449 T 449 (516)
Q Consensus 449 t 449 (516)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 66
>PRK05086 malate dehydrogenase; Provisional
Probab=94.12 E-value=0.25 Score=51.17 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=67.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 409 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~~~L~eav~~ 409 (516)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887442 122 257889997522 11110012211 000000 0012467788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.|++|=+.+.. |. ..++++++|.+++.+.+|+--|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888666653 21 5678999999999999999999997
No 67
>PRK08328 hypothetical protein; Provisional
Probab=93.90 E-value=0.034 Score=54.99 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=43.2
Q ss_pred HHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEE
Q 010154 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (516)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (516)
++||...+..|..+. -.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877766665432 3567899999999999999999999875 75 789999
Q ss_pred cCC
Q 010154 373 DSK 375 (516)
Q Consensus 373 Ds~ 375 (516)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 975
No 68
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.90 E-value=0.35 Score=50.60 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=68.9
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc-cccCCCCCHHHH
Q 010154 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDA 406 (516)
Q Consensus 329 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A-~~~~~~~~L~ea 406 (516)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+....+- +......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999987753 243 3689999982 21 111112322111100 011111334788
Q ss_pred hcccCCcEEEEccCCC---C--------C---CCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 407 VKVIKPTILIGSSGVG---R--------T---FTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 407 v~~vkptvLIG~S~~~---g--------~---Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
+++ .|++|=+.+.+ | . ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 987 99888555543 3 1 4568899999999999999999997
No 69
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.77 E-value=0.11 Score=53.45 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=75.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHhc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~eav~ 408 (516)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+..++.-++.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999987652 54 2 599999832222211000110 00110000 11246766 66
Q ss_pred ccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecC
Q 010154 409 VIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 472 (516)
Q Consensus 409 ~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAsG 472 (516)
. .|++|=+.+.+ | .+=+++++.|.+++.+.+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88887444432 2 12245666788888999999999996 777778877742 23478887
Q ss_pred C
Q 010154 473 S 473 (516)
Q Consensus 473 S 473 (516)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 70
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.67 E-value=0.045 Score=50.24 Aligned_cols=115 Identities=21% Similarity=0.361 Sum_probs=71.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC-CcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~ 409 (516)
.||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ .. ..+..-+|.+..-+.-++..-..+..+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~-~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDK-AEGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHH-HHHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCccc-ceeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 3569999986 21 1111111222211111111111356677876
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 462 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w 462 (516)
+|++|=+.+.+ |- +-+++.+.+++++.+.+++-.|||. ....+-+++.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv---d~~t~~~~~~ 131 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV---DVMTYVAQKY 131 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH---HHHHHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH---HHHHHHHHHh
Confidence 99999555443 21 3346777888899999999999996 4555555543
No 71
>PRK08223 hypothetical protein; Validated
Probab=93.58 E-value=0.14 Score=53.11 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeE
Q 010154 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (516)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i 369 (516)
|..-++|..++..|..+- -.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~------------------Q~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTE------------------QQRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHH------------------HHHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 667778876666654443 2678999999999999999999999876 75 789
Q ss_pred EEEcCCCcccCCCc-------cCCchhchhhccc-----c---------CCC--CCHHHHhcccCCcEEEEccCCCCCCC
Q 010154 370 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE-----H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFT 426 (516)
Q Consensus 370 ~lvDs~GLi~~~R~-------~~l~~~k~~~A~~-----~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft 426 (516)
.++|.+=+=.++-. +++-..|..-|.+ . ..+ .++.+.+++ .|++|=.+--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998743222110 1122223222211 0 111 356777775 898883332110125
Q ss_pred HHHHHHHHcCCCCcEEEEcCCC
Q 010154 427 KEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNP 448 (516)
.-.|-..+.....|.|.+-+.-
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred HHHHHHHHHHcCCCEEEEeccC
Confidence 6777778888889999975443
No 72
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.39 E-value=0.48 Score=46.83 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCC
Q 010154 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (516)
Q Consensus 312 aV~LAgll~Al~~~g---------~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~ 381 (516)
-+|-.|++.=|+..+ .+++.++++++|-+ ..|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 344555555556554 48999999999986 467778888754 24 468899999988876
Q ss_pred CccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHH
Q 010154 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 431 (516)
Q Consensus 382 R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~ 431 (516)
+...+.+.+.+ ..+.-.+|.|.++. +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 64322111100 00111248899987 9999999999998 8999997
No 73
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.27 E-value=0.18 Score=49.40 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|++.||+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999999764 75 789999986
No 74
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.27 E-value=0.48 Score=49.42 Aligned_cols=94 Identities=11% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
|..|.+++|.|+|.|..|..+|+.+..+ .|+ ++|..|+.. . ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHH
Confidence 4568999999999999999999998533 243 688888642 1 001 1111 12357999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
+++. .|+++=..- ..++++++.++.|. +..++.=.|.=
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG 238 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARG 238 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCC
Confidence 9987 899885421 23577888888886 57788877764
No 75
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.26 E-value=0.15 Score=51.35 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999998763 4 358888874
No 76
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.16 E-value=0.13 Score=49.98 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc-CC-CCCHH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-VNNLL 404 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~~-~~~L~ 404 (516)
.+|++.||+|+|+|..|..||..|+.+ |+ +++.++|.+=+ ..+ +|+.. ..+..+- .. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---ccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999775 65 68999998632 221 24432 1111110 00 12355
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCCCCCC
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSE 453 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~~E 453 (516)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 66666667654432 223456655554332 223444 4456554443
No 77
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.08 E-value=0.74 Score=49.36 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=80.8
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3555555422 2234457899999999999999999999999999999999998643 65 5778886
Q ss_pred CCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEE---cc-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 375 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SS-----GVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 375 ~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG---~S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.. .. .. ......+|.|+++. .|+++= ++ ...++|+++.+..|. +..++.=.|
T Consensus 148 ~~------~~-~~--------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR------QE-AE--------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc------cc-cc--------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 21 10 00 01123478888876 787761 11 123689999998886 567777666
Q ss_pred C
Q 010154 447 N 447 (516)
Q Consensus 447 N 447 (516)
.
T Consensus 208 R 208 (381)
T PRK00257 208 R 208 (381)
T ss_pred C
Confidence 5
No 78
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.06 E-value=0.13 Score=53.97 Aligned_cols=99 Identities=24% Similarity=0.271 Sum_probs=63.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch-------------hchhh
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-------------FKKPW 393 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~-------------~k~~~ 393 (516)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+. |+. .|..-
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~sN---L~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWSN---LQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-cccc---cCccccccHHHccCCccHHHH
Confidence 578999999999999999999999875 65 78999999742 1111 110 01100
Q ss_pred c----cc----------cCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 394 A----HE----------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 394 A----~~----------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
| +. .... .++.+.++. .|++|-++. ..-+..++..++.....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 0 00 0011 246666665 788887764 2335566666776677888875
No 79
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.05 E-value=0.55 Score=48.95 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=78.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCHHHHhcc
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~--~~~~L~eav~~ 409 (516)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + ..+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3689999998 2 232221244332 1111111 11346677887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC----HHHHhcccCC--cEEE
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECT----AEEAYTWSKG--RAIF 469 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ect----pe~A~~wt~G--~aif 469 (516)
.|++|=+++.+ |- .-+++++.+.+++...+|+-.|||. .+. .+-++++++= +-+|
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---Dv~~~i~t~~~~~~s~~p~~rvi 143 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV---NSTVPIAAEVLKKAGVYDPKRLF 143 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---hhHHHHHHHHHHHhcCCCHHHEE
Confidence 99888555543 31 2356777888899999999999996 443 4555555421 1367
Q ss_pred ecCC
Q 010154 470 ASGS 473 (516)
Q Consensus 470 AsGS 473 (516)
++|.
T Consensus 144 G~~~ 147 (310)
T cd01337 144 GVTT 147 (310)
T ss_pred eeec
Confidence 7764
No 80
>PLN02928 oxidoreductase family protein
Probab=93.04 E-value=1.3 Score=46.55 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEE
Q 010154 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (516)
Q Consensus 308 QGTaaV~LAgll~Al~~----------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (516)
+.+|--+++.+++.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998542 64 6777
Q ss_pred EcCCCcccCCCccCCchhc----hhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 372 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 372 vDs~GLi~~~R~~~l~~~k----~~~A~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...++|+++.++.|. +..++.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 000000000 00 0111111134689999997 99998652 224799999999996 567887
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEecCCCCC--ceeeCCEEeccccccceeecccchHH
Q 010154 444 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFEYNGKVFVPGQVYNHNHFAFAKIP 502 (516)
Q Consensus 444 aLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~--pv~~~Grt~~p~Q~NN~yiFPGiglg 502 (516)
=.|.-.---|-.--+|++ .|+.-.|.=-=|. |..-+. .--+..|+.+-|=+|-.
T Consensus 260 NvaRG~lVde~AL~~AL~--~g~i~gAaLDV~~~EP~~~~~---pL~~~~nviiTPHia~~ 315 (347)
T PLN02928 260 NIARGGLLDYDAVLAALE--SGHLGGLAIDVAWSEPFDPDD---PILKHPNVIITPHVAGV 315 (347)
T ss_pred ECCCccccCHHHHHHHHH--cCCeeEEEEccCCCCCCCCCC---hhhcCCCEEECCcCCCC
Confidence 766543222222223333 4655433211111 100010 01235688888877743
No 81
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.01 E-value=0.21 Score=51.23 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 315 LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.|++.+++..+..+++.+++++|||-|+.+|+-.+.. .|+ ++|+++|+.
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35678888888888999999999999998888776654 364 689999984
No 82
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.98 E-value=0.18 Score=53.14 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=63.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCC--------ccCCchhchhhcc---
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--------KDSLQHFKKPWAH--- 395 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R--------~~~l~~~k~~~A~--- 395 (516)
++|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+= |..+. .+++-..|..-+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 467899999999999999999999775 75 7899999862 11110 0011111111111
Q ss_pred --ccC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 396 --EHE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 396 --~~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
-.+ .. .++.+.++. .|++|-++... =+...+..++.....|+|++-.
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 001 11 134455654 78888776532 2455677777777888888643
No 83
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.96 E-value=0.16 Score=52.35 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=55.3
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc
Q 010154 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (516)
Q Consensus 317 gll~Al~~~g--~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A 394 (516)
|++.+|+..+ ...+.+++|++|||-|+.+|+-.|.++ |. ++|+++++ +.+|...| .+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHHHH---HHHhh
Confidence 5778888766 456689999999999999999888764 64 78999998 45553222 22232
Q ss_pred ccc-----CCCCCHHHHhcccCCcEEEEccCCC
Q 010154 395 HEH-----EPVNNLLDAVKVIKPTILIGSSGVG 422 (516)
Q Consensus 395 ~~~-----~~~~~L~eav~~vkptvLIG~S~~~ 422 (516)
+.. ....++.. .+ ..|++|=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 489999776655
No 84
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.88 E-value=0.37 Score=49.94 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAGsA-g~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.-++..+-++++.+++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45677888999999999999999999999988 9999999864 243 45555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
..+|.+.++. +|++|-..+.++.|++++++ +.-+|+=.+
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVG 230 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVG 230 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEcc
Confidence 1357788887 99999999999999998886 444555443
No 85
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.79 E-value=0.25 Score=53.12 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=73.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc------CCCCCHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLD 405 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~------~~~~~L~e 405 (516)
.||.|+|||+.|.+.+- +..+..... .+-.+++|+|.+- ++.+.....-+.+.... ....++.+
T Consensus 1 ~KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e 70 (423)
T cd05297 1 IKIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRRE 70 (423)
T ss_pred CeEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH
Confidence 37999999999888663 111111011 1235899999742 22111111111111111 11357899
Q ss_pred HhcccCCcEEEEccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 406 AVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 406 av~~vkptvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIFaLSNPt 449 (516)
++++ +|++|=.-..+ |+| -.++.+.|.+++++.+++=.|||.
T Consensus 71 al~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv 148 (423)
T cd05297 71 ALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM 148 (423)
T ss_pred HhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH
Confidence 9987 89887444321 122 127777777888899999999997
Q ss_pred CCCCCCHHHHhcccCCcEEEecC
Q 010154 450 SQSECTAEEAYTWSKGRAIFASG 472 (516)
Q Consensus 450 ~~~Ectpe~A~~wt~G~aifAsG 472 (516)
-+..+-+++.++ .-++.+|
T Consensus 149 ---~i~t~~~~k~~~-~rviG~c 167 (423)
T cd05297 149 ---AELTWALNRYTP-IKTVGLC 167 (423)
T ss_pred ---HHHHHHHHHhCC-CCEEEEC
Confidence 445555567665 5577777
No 86
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.71 E-value=0.34 Score=47.61 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999775 75 789999986
No 87
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.45 E-value=0.68 Score=48.35 Aligned_cols=121 Identities=21% Similarity=0.144 Sum_probs=77.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc--ccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~ 409 (516)
||.|.|| |..|..+|..|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999987764 35532223347999998741 11111112333322332221111467788988
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
.|++|=+.+.+ |- +-+++++.|+++ ++.-||+--|||. .+..--+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 89888555443 31 236778888889 4999999999995 67776777765
No 88
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.44 E-value=0.22 Score=50.88 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 53 58888874
No 89
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.34 E-value=1.2 Score=47.79 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 455567889999889889999999999999999999999998643 65 67778852 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEE---ccC-----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|+.=.|.
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 208 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR 208 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC
Confidence 00123468888765 787761 111 23578888888886 5667775554
No 90
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.33 E-value=0.37 Score=49.83 Aligned_cols=93 Identities=18% Similarity=0.331 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
=.-+|-.|++.=++..+-+++..+++++|.+ .-|.-+|.++... | ..+..++|+
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3466778888999999999999999999998 8888888887542 3 346666653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
..+|.+.++. +|++|++-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 0368999987 99999999988999999983 566776554
No 91
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.33 E-value=0.51 Score=49.31 Aligned_cols=92 Identities=14% Similarity=0.279 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|... | ..+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778888889999999999999999996 9999999999763 5 356777653 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.++.|+++. +|++|=..+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989899998843 566777776
No 92
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.29 E-value=0.29 Score=50.17 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4677788765557888999999999999999887765 364 689999983
No 93
>PRK15076 alpha-galactosidase; Provisional
Probab=92.19 E-value=0.36 Score=52.31 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC-chhchhhccccCC-----CCCHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-QHFKKPWAHEHEP-----VNNLLD 405 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l-~~~k~~~A~~~~~-----~~~L~e 405 (516)
.||.|+|||+.|...+ ++..+....++ +-..++|+|.+- +|.+.. ...+...+..... .+++.+
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999854443 33333221233 235899999742 221100 0011111111111 257889
Q ss_pred HhcccCCcEEEEccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 406 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 406 av~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
++++ +|++|=..+++|. .=.|+++.|.+++...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9987 8888755554421 124778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 010154 449 TSQSECTAEEAYTWSKGRAIFASG-SPFD 476 (516)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsG-SPf~ 476 (516)
. .+-.+-++.+. ..-+|++| +|+.
T Consensus 150 ~---divt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 M---AMNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred H---HHHHHHHhcCC-CCCEEEECCCHHH
Confidence 6 45555555664 34588888 6643
No 94
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.15 E-value=0.57 Score=48.63 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++..++..+-+|+..+++++|.+. .|.-+|.+|... | ..+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~-------------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF-------------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc--------------
Confidence 4678889999999999999999999999998 999999998642 4 246666642
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 198 ----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257888887 99999999999999999886
No 95
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.13 E-value=0.17 Score=46.82 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=51.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhch--hhccc---cCC---CCCHH
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--~~A~~---~~~---~~~L~ 404 (516)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 799999999999999998763 4 56777766531111 1111111 11110 111 25899
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (516)
+++++ +|++| +..+. .+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99987 88776 33332 56689999998744
No 96
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.95 E-value=1.3 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..||.|+|+|..|.++|..+..+ | .++.+.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45899999999999999999764 4 356777764
No 97
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.83 E-value=0.78 Score=47.62 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~ 396 (516)
|.+++...... ...+++|+|+|..|..+++.+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999999998877543 243 678888772 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010154 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (516)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~ 458 (516)
.....++.++++. .|++|-++.. ...|+.++++. .-.|.++.-.+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1123679999986 9999987643 24678887753 22455554322 246887765
No 98
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.78 E-value=0.38 Score=49.13 Aligned_cols=57 Identities=30% Similarity=0.314 Sum_probs=42.9
Q ss_pred CceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 300 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 300 ~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..=+|-| -.|++.+++..+..+++.+++|+|||-||.+||..+.. .|. ++|.++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4456666 45678888877778889999999999777777766644 364 679999874
No 99
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.70 E-value=0.57 Score=44.50 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999774 65 689999986
No 100
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.68 E-value=5.3 Score=43.62 Aligned_cols=186 Identities=24% Similarity=0.241 Sum_probs=126.0
Q ss_pred CChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCch-H-HHHHHHHcCC-----Ccee----------ccCCcchHHHHH
Q 010154 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN-A-FELLAKYGTT-----HLVF----------NDDIQGTASVVL 315 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~-a-f~iL~ryr~~-----~~~F----------nDDiQGTaaV~L 315 (516)
.+-.|-.+|...|++++.+.-||+.-|-=+|+...- . --+.+.|+.- .+|| .+----||-=+.
T Consensus 112 ~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~ 191 (411)
T COG0334 112 LSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVF 191 (411)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehH
Confidence 566778889999999999999999999999998632 2 2256666531 2222 122223443333
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~ 395 (516)
-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|.|+... .|+..+....+
T Consensus 192 ~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~~ 258 (411)
T COG0334 192 YAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLELK 258 (411)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHHh
Confidence 34448888899889999999999999999999998653 52 5677789999888874 35533322111
Q ss_pred c----------cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010154 396 E----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (516)
Q Consensus 396 ~----------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (516)
+ .+.+.+ |.+-.+..|||+=+.. .+.+|++-.+.+.+ + +|.=-+| |+ +-.+++.+.
T Consensus 259 ~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~---t~eA~~i~~ 325 (411)
T COG0334 259 ERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPT---TPEADEILL 325 (411)
T ss_pred hhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCC---CHHHHHHHH
Confidence 1 011112 3344467899997766 46999999998863 2 8888888 77 344455554
No 101
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.52 E-value=1.4 Score=45.96 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=80.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~~A~~~~~~~~L~eav~ 408 (516)
-||+|.|| |..|..+|..|+.. |+--.+....+.++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 99999999987652 43100112379999985421 111100122111122111111257888898
Q ss_pred ccCCcEEEEccCCCC--CCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEec
Q 010154 409 VIKPTILIGSSGVGR--TFT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 471 (516)
Q Consensus 409 ~vkptvLIG~S~~~g--~Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAs 471 (516)
+ +|++|=+.+.+. --| +++++.|.+++ ..-||+-.|||. .+..--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 7 999885555432 123 56778888885 689999999996 7777777776532 122666
Q ss_pred CCCCC
Q 010154 472 GSPFD 476 (516)
Q Consensus 472 GSPf~ 476 (516)
|.-.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 65433
No 102
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.43 E-value=0.46 Score=48.02 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=55.7
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhh
Q 010154 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (516)
Q Consensus 315 LAgll~Al~~-~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~ 393 (516)
-.|++++++. .+..+++.+++++|||.+|-+++..+.. .|+ ++++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3567777774 5778999999999999999998888864 354 679999884 222 11122222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEEccCCC
Q 010154 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (516)
Q Consensus 394 A~~~-~~~-~~L~eav~~vkptvLIG~S~~~ 422 (516)
.... -.. .++.+++.. .|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999888765
No 103
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.38 E-value=1.2 Score=46.68 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=82.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~ 409 (516)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. ..+..-+|.+...++...-....+..+++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999987652 44100000168999974321 1111112433332332111111255777887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecC
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 472 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAsG 472 (516)
.|++|=+.+.+ |- +=+++++.|+++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 89988555543 21 124677888888 4899999999996 7887778777632 2388888
Q ss_pred CCCC
Q 010154 473 SPFD 476 (516)
Q Consensus 473 SPf~ 476 (516)
.-.+
T Consensus 151 t~LD 154 (324)
T TIGR01758 151 TRLD 154 (324)
T ss_pred eehH
Confidence 6544
No 104
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.38 E-value=1.5 Score=48.86 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=87.4
Q ss_pred hhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceec--cCCcchHHHH
Q 010154 237 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVV 314 (516)
Q Consensus 237 e~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~ 314 (516)
+.|.++-.++++-|+-.. .|.++++.++ .-++|-+|.+-. + .|- .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n--------~~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN--------PELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC--------HHHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566777777775332 2333333332 234566775531 0 111 1222232 4556666665
Q ss_pred HHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch-
Q 010154 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH- 388 (516)
Q Consensus 315 LAgll~Al~~~g-----~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~- 388 (516)
.|+-.-.-...| ......|++|+|+|.+|+..+..+... |. ++.++|.+.-... +...+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle-~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE-QVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH-HHHHcCCe
Confidence 554332222222 134568999999999999988776542 52 3777777543110 0000100
Q ss_pred -----------hchhhccccCC------CCCHHHHhcccCCcEEEEccCCC-----CCCCHHHHHHHHc
Q 010154 389 -----------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMAS 435 (516)
Q Consensus 389 -----------~k~~~A~~~~~------~~~L~eav~~vkptvLIG~S~~~-----g~Ft~evv~~Ma~ 435 (516)
...-||+...+ ..-+.+.++. .|++|++.-.+ -+.|+|+++.|..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00112221100 0125556665 99999998333 3599999999974
No 105
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.31 E-value=0.6 Score=44.06 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=67.8
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCC
Q 010154 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (516)
Q Consensus 322 l~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~ 401 (516)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 45667889999999999999999999998643 54 6888887421 100 1111111235
Q ss_pred CHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 402 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 402 ~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
+|.|.++. .|+++=.- ...+.|+++.++.|. +..++.-.|.-.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aRG~ 130 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVARGE 130 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSSGG
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccchh
Confidence 89999997 89988432 224799999999997 566777666543
No 106
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.27 E-value=0.27 Score=51.60 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 578999999999999999999999775 75 6899999963
No 107
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.10 E-value=0.39 Score=43.07 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999886 65 79999998633
No 108
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.10 E-value=0.44 Score=51.91 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=76.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-cCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~-~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~-----~~~L~ 404 (516)
.||+|+||||+ -+..|+..+.+. ..++ .+.|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444555555442 2342 4789999975 33322122222233222 112 25899
Q ss_pred HHhcccCCcEEEEcc--------------------------CCCCC--------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 405 DAVKVIKPTILIGSS--------------------------GVGRT--------FTKEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 405 eav~~vkptvLIG~S--------------------------~~~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
||+++ +|.+|=.- +.||. .-.++++.|.+.+.+.+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99998 88877221 22332 2358888999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEecCCCC
Q 010154 451 QSECTAEEAYTWSKGRAIFASGSPF 475 (516)
Q Consensus 451 ~~Ectpe~A~~wt~G~aifAsGSPf 475 (516)
..+|-.--..++.-|+|=-+-+|+
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~ 170 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPI 170 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHH
Confidence 444433221233445544344444
No 109
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.09 E-value=0.55 Score=48.80 Aligned_cols=125 Identities=19% Similarity=0.284 Sum_probs=78.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~~~~L~eav~~ 409 (516)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999988754 255 4789999974211111111133222 232211 11135555 776
Q ss_pred cCCcEEEEccCC---CCCCC------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecC
Q 010154 410 IKPTILIGSSGV---GRTFT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (516)
Q Consensus 410 vkptvLIG~S~~---~g~Ft------------~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsG 472 (516)
+|++|=+.+. +| -| +++++.|.+++.+-+|+-.|||. .....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecC
Confidence 8998754443 33 33 36778888999999999999996 57777777663 123578776
Q ss_pred CC
Q 010154 473 SP 474 (516)
Q Consensus 473 SP 474 (516)
.-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 53
No 110
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.98 E-value=0.61 Score=46.70 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 578999999999999999999999875 75 789999987
No 111
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.96 E-value=0.73 Score=49.07 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=65.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCc-------cCCchhchhhccc---
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~-------~~l~~~k~~~A~~--- 396 (516)
++|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+=+=.++-. +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~ 105 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLK 105 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHH
Confidence 678999999999999999999999875 65 78999998733111100 0111122211110
Q ss_pred --cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 397 --HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 397 --~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
.+ .+ .++.+.+++ .|++|.++.. .=++-.|..++.....|.|++
T Consensus 106 ~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 106 EIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 245566765 8888877653 235666777777778899886
No 112
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.82 E-value=0.72 Score=47.88 Aligned_cols=96 Identities=16% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..+-+++.+++|++|.+ ..|.-+|.||... |. .+ ...+..++++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc-------------
Confidence 466778889999999999999999999986 5688888887541 10 00 13455565431
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.+|.+.++. +|++|+..+.++.+++|+|+ +.-+|.-.+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVG 233 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVG 233 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 358899997 99999999999999999993 455665443
No 113
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.78 E-value=0.84 Score=46.29 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999998653 53 5888886
No 114
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.71 E-value=0.89 Score=47.16 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.-++..|.+++..+++++|.+ ..|.-+|.||... | ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNE-----N-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEEeCC--------------
Confidence 456778889999999999999999999985 5788888888542 4 345666541
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
..+|.+.++. +|++|...+.++.|++|+|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999995
No 115
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.39 E-value=2.1 Score=45.04 Aligned_cols=111 Identities=23% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCceeccCCc---chHHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhh
Q 010154 299 THLVFNDDIQ---GTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (516)
Q Consensus 299 ~~~~FnDDiQ---GTaaV~LAgll~Al~------------------~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~ 357 (516)
.+.|+|-.-- ..|=-++|.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 3555555442 334446777787777 567789999999999999999999998553
Q ss_pred cCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHH
Q 010154 358 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 433 (516)
Q Consensus 358 ~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~M 433 (516)
|+ ++..+|.. ..+. .. -........+|.+.++. .|++.-.- ..-|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 57777772 2211 00 00112234679999987 89988542 22378999999999
Q ss_pred H
Q 010154 434 A 434 (516)
Q Consensus 434 a 434 (516)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 116
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.32 E-value=1 Score=46.61 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
=.-+|-+|++.=++..+-+++.+++|++|.+ ..|.-+|.+|... |. .+.+|+|+ .
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-------C-----
Confidence 3456778889999999999999999999998 8899999998642 42 34455442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
++|.+.++. +|++|-..+.++.+++|+|+
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 247788887 99999999999999999997
No 117
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.29 E-value=1.9 Score=45.02 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=79.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~~~~L~eav~~ 409 (516)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+... ..+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 26899999876 2222112443221 01101 011246788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHHHhcccC--CcEEEecC
Q 010154 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 472 (516)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~Ectpe~A~~wt~--G~aifAsG 472 (516)
.|++|=+.+.+ |- .=+++.+.+.+++...||+-.|||.. ++.+..+-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 99888555543 21 22467777888999999999999972 12225566666442 12478877
Q ss_pred CCCC
Q 010154 473 SPFD 476 (516)
Q Consensus 473 SPf~ 476 (516)
. .+
T Consensus 146 ~-LD 148 (312)
T TIGR01772 146 T-LD 148 (312)
T ss_pred c-ch
Confidence 5 44
No 118
>PRK05442 malate dehydrogenase; Provisional
Probab=90.12 E-value=1.1 Score=47.11 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=73.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~~A~~~~~~~~L~eav~ 408 (516)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. ..+..-+|.+...++-+...-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 39999998 99999998877653 33100001389999985321 111111243333233222111135667788
Q ss_pred ccCCcEEEEccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 409 VIKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 409 ~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
+ +|++|=+.+. +| .+=+++.+.+.+++ ...||+-.|||. .+..--+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 7 9988844443 33 12345667777866 699999999996 77777777765
No 119
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.10 E-value=0.68 Score=48.05 Aligned_cols=124 Identities=15% Similarity=0.277 Sum_probs=78.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc-ccCC--CCCHHHHhcc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP--VNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~-~~~~--~~~L~eav~~ 409 (516)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ..-. .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998865 255 3689999973111111111233211 2221 0001 134 456776
Q ss_pred cCCcEEEEccCC---CCCCC--------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010154 410 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (516)
Q Consensus 410 vkptvLIG~S~~---~g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (516)
.|++|=+.+. +| -| +++++.+.+++...|++-.|||. .+...-+++++. -+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 8998855554 33 23 57788888999999999999995 677777777652 234677
Q ss_pred cCCC
Q 010154 471 SGSP 474 (516)
Q Consensus 471 sGSP 474 (516)
||.-
T Consensus 143 ~gt~ 146 (307)
T cd05290 143 TGTM 146 (307)
T ss_pred ccch
Confidence 7643
No 120
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.78 E-value=0.52 Score=47.12 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|++.||+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 367889999999999999999999875 75 799999986
No 121
>PRK14851 hypothetical protein; Provisional
Probab=89.66 E-value=1.4 Score=50.58 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCc-------cCCchhchhhccc---
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~-------~~l~~~k~~~A~~--- 396 (516)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 678999999999999999999999875 75 78999997633222110 1122222222211
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC----------CCCCCCC
Q 010154 397 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS----------NPTSQSE 453 (516)
Q Consensus 397 --~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS----------NPt~~~E 453 (516)
. ..+ .++.+.+++ .|++|-...-...-++..|...+..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 0 111 246677775 89998554321111345677778788899998754 675 5
Q ss_pred CCHHHHhcccCC
Q 010154 454 CTAEEAYTWSKG 465 (516)
Q Consensus 454 ctpe~A~~wt~G 465 (516)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 778888888776
No 122
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.61 E-value=0.61 Score=47.54 Aligned_cols=119 Identities=18% Similarity=0.365 Sum_probs=72.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~----~l~~~k~~~A~~~---~~~~~L~ea 406 (516)
|.|+|||..|.++|..++. .|+ . .++++|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l-----~-eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL-----G-DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC-----c-EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999988764 254 1 79999986 22210 011110 000000 011354 45
Q ss_pred hcccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010154 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (516)
Q Consensus 407 v~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (516)
+++ +|++|=+.+.+ | .+-+++++.|.+++...+|+-.|||. ......+.++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 776 89988433322 2 12347888899999999999999996 566666666652 125888
Q ss_pred cCCC
Q 010154 471 SGSP 474 (516)
Q Consensus 471 sGSP 474 (516)
+|.-
T Consensus 139 lgt~ 142 (300)
T cd01339 139 MAGV 142 (300)
T ss_pred ecch
Confidence 8843
No 123
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.53 E-value=1.4 Score=42.80 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc---cc-c----CCCCCH
Q 010154 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (516)
Q Consensus 333 riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A---~~-~----~~~~~L 403 (516)
||.|+| +|..|..+|..+.+. | .++++.|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998653 4 467777653 111 211111111 10 0 011366
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010154 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (516)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (516)
.++++. +|++| ++... ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 88777 44433 3457788888654344799999999854
No 124
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.41 E-value=1.5 Score=45.62 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc
Q 010154 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (516)
Q Consensus 312 aV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (516)
-+|-.|++.=++..+-+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 44667778888889999999999999985 578888888854 24 246666653
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 391 ~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.+++ +|++|...+.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 125
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.36 E-value=1.2 Score=46.08 Aligned_cols=92 Identities=23% Similarity=0.381 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..|-+++..+++|+|. |..|.-+|.+|..+ |. .+.++.+ +.
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC------
Confidence 45677788888999999999999999999 99999999999763 53 3444422 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.+|.++++. +|++|-..+.++.+++++++ +..+|.=.+
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268899987 99999999999999998854 556666555
No 126
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.98 E-value=0.82 Score=47.10 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=76.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~-~~~~L~eav~~vk 411 (516)
||.|+|+|..|..+|..++.. |+ ...++++|.+-=...+...++.+. .++..... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 799999999999999987652 54 368999997411011100012211 11211100 01344 55776
Q ss_pred CcEEEEccCCCCC----C----------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecCCCC
Q 010154 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 475 (516)
Q Consensus 412 ptvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAsGSPf 475 (516)
.|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 8887744443311 1 246777888888899999999995 777777777651 24478887554
No 127
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.84 E-value=2.4 Score=44.53 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=64.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc---hhchhhccc---c---C-
Q 010154 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHE---H---E- 398 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~---~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~---~~k~~~A~~---~---~- 398 (516)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-++|++|-+...+.-++. .+++.+... . .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 3333345421 224467999988776531121 122222210 0 0
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888777899999999643 33333344444 3678885
No 128
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.83 E-value=1.9 Score=38.56 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~v 410 (516)
.||+++|+ |-.|..|++.+.+. .|+ +=...+|++.=-..+. + +-+.-......-+-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d-~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-D-VGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-B-CHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-h-hhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999998763 343 3356778875111111 1 111000000000112567777776
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
+||+|=.|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88888777432 334455554444 4555554
No 129
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.72 E-value=1.8 Score=44.81 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..+-+|+.++++++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888999999999999999999975 578888888854 242 46666652
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
..+|.+.++. +|++|-..+.++.|++|+|+ +..+|+=
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVID 228 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVID 228 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEE
Confidence 1357888887 99999999999999999997 4556653
No 130
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.65 E-value=1.4 Score=45.88 Aligned_cols=95 Identities=15% Similarity=0.280 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc
Q 010154 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (516)
Q Consensus 312 aV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (516)
-+|-+|++.=++..+.+++.++++|+|.+ -.|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 45666788889999999999999999986 5788888888653211 12 244455432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 391 ~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
..+|.+.++. +|++|+..+.++.|++++|+ +.-+|.-.+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1358899987 99999999999999999993 555665443
No 131
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.60 E-value=1.1 Score=43.62 Aligned_cols=100 Identities=13% Similarity=0.247 Sum_probs=55.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~ 409 (516)
++.||.|+|+|..|.++|..+... |.. -.++++++++. + .+.+...+++|- .....++.++++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999988653 310 12346666542 0 011222222221 1112467777764
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.|++| ++..+. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 77766 444343 3477787777543344666666554
No 132
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.49 E-value=1.9 Score=41.08 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
---+|-.|++.-++..+-+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------- 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------- 69 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-------------
Confidence 34567788889999999999999999999984 888888888652 32 34445542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.++. +|++|-..+.++.++.|+|+
T Consensus 70 -----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 -----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred -----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999986
No 133
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.46 E-value=2.6 Score=44.12 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=74.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~~A~~~~~~~~L~eav~ 408 (516)
.||.|+|| |..|..+|-.|+.. |+-.-.-...+.|+|.+.-. ..+..-+|.+...++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 48999999 99999998877652 44100011379999985432 111111233333233221111134567788
Q ss_pred ccCCcEEEEccCC---CCCCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 409 VIKPTILIGSSGV---GRTFT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 409 ~vkptvLIG~S~~---~g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
+ .|++|=+.+. +| .| +++.+.+.+++ +.-||+-.|||. .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 9999855544 33 23 45677788888 499999999996 66666676665
No 134
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.42 E-value=1.5 Score=45.78 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.=++..+.+++.++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4566778888889999999999999999 999999999999753 53 45566432 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
+|.|+++. +|++|-+-+.++.+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 47888886 99999888888888887743 445665554
No 135
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=88.24 E-value=1.9 Score=45.11 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
-.-+|-+|++.=++..|-+++.+++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456677788889999999999999999986 568888888754 24 356677653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.++. +|++|-..+.++.++.|+|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 136
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.15 E-value=2.9 Score=43.80 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=75.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~~A~~~~~~~~L~eav~ 408 (516)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. ..+..-+|.+..-++.+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999998764 254110111279999986311 111111233322222221111135667788
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 010154 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 463 (516)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~~Ectpe~A~~wt 463 (516)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||. .+..--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 89988554443 31 22457778888887 99999999996 77777777776
No 137
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.12 E-value=1.9 Score=44.82 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.-++..|-+++.++++++|.+ ..|.-+|.||... ..| ..+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 456778888899999999999999999985 5788888888531 013 235555552
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
..+|.+.++. +|++|-..+.++.+++|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999997
No 138
>PRK07411 hypothetical protein; Validated
Probab=88.07 E-value=1.2 Score=47.53 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 3678899999999999999999999886 75 789999986
No 139
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.05 E-value=2 Score=44.71 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
+=.-+|-+|++.=++..+-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|+|+ .
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T---- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T---- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567778899999999999999999999975 578888888854 242 35566552 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.+|.+.++. +|++|-..+.++.+++|+|+
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 358888887 99999999999999999997
No 140
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.92 E-value=6.4 Score=41.23 Aligned_cols=143 Identities=12% Similarity=0.061 Sum_probs=85.0
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998643 54 577788731 1 1 10 01111 12347999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCC--Ccee
Q 010154 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFE 479 (516)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf--~pv~ 479 (516)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=| +|..
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~ 273 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYY 273 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCC
Confidence 9987 898884421 13689999999996 57787766654322222223333 3465443321111 1111
Q ss_pred eCCEEeccccccceeecccchHHH
Q 010154 480 YNGKVFVPGQVYNHNHFAFAKIPI 503 (516)
Q Consensus 480 ~~Grt~~p~Q~NN~yiFPGiglg~ 503 (516)
+ . .--+..|+++-|=+|-..
T Consensus 274 -~-~--pL~~~~nvilTPHia~~t 293 (333)
T PRK13243 274 -N-E--ELFSLKNVVLAPHIGSAT 293 (333)
T ss_pred -C-c--hhhcCCCEEECCcCCcCH
Confidence 1 1 112456899999887544
No 141
>PLN02306 hydroxypyruvate reductase
Probab=87.87 E-value=4.6 Score=43.46 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=101.7
Q ss_pred cCCCceeccCC---cchHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHH
Q 010154 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Al~~~---------------------g~~L~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34677777532 223444566666665432 346889999999999999999999865
Q ss_pred HHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEEc----
Q 010154 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (516)
Q Consensus 353 ~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~--------~--~~~~~~L~eav~~vkptvLIG~---- 418 (516)
+| |+ +++.+|+..- . ........+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 53 54 6888887421 0 01110001100 0 0112489999987 9998863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCC-CC--CceeeCCEEeccccccceee
Q 010154 419 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS-PF--DPFEYNGKVFVPGQVYNHNH 495 (516)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGS-Pf--~pv~~~Grt~~p~Q~NN~yi 495 (516)
....|.|+++.++.|. +..++.=.|.=.---|..--+|++ .|+. .+.|. =| +|. .+. .--+..|+.+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aRG~lVDe~AL~~AL~--sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNVil 317 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASRGPVIDEVALVEHLK--ANPM-FRVGLDVFEDEPY-MKP---GLADMKNAVV 317 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCEEE
Confidence 2234799999999997 566766555422222222333433 3553 33221 00 111 010 1124679999
Q ss_pred cccchHHHH
Q 010154 496 FAFAKIPII 504 (516)
Q Consensus 496 FPGiglg~i 504 (516)
-|=+|-...
T Consensus 318 TPHiag~T~ 326 (386)
T PLN02306 318 VPHIASASK 326 (386)
T ss_pred CCccccCcH
Confidence 998875543
No 142
>PRK08291 ectoine utilization protein EutC; Validated
Probab=87.85 E-value=2 Score=44.67 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~ 396 (516)
|.+++..... -..++++|+|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455544432 2347999999999988887776542 233 678888762 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010154 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (516)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (516)
-....++.++++. +|++|-++.. .-+|+.++++. .--|.++ |+-..+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123688999986 8999876543 34677777653 1123333 3322346888765
No 143
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.84 E-value=1.2 Score=45.55 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|++.+++..|.+. +.+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 46777887766653 4699999999999999887754 364 679999984
No 144
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.78 E-value=0.28 Score=54.31 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=29.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
.+.-+|+|+|||.||+..|++|.+... .+..=|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 344589999999999999999988743 2567788875
No 145
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.78 E-value=2.2 Score=44.50 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.-++..+.+++.+++|++|.+ -.|.-+|.||.. .| ..+.+|+|+ .
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------T------ 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------T------ 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-------C------
Confidence 456778888999999999999999999986 578888888754 23 345666653 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
++|.+.++. +|++|-..+.++.+++|+|+ +.-||+=
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVID 230 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVID 230 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 357888887 99999999999999999997 4556543
No 146
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.66 E-value=2.2 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
...||.|+|||+-|+++|..+...
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 457999999999999999999763
No 147
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.62 E-value=2.6 Score=43.58 Aligned_cols=121 Identities=24% Similarity=0.363 Sum_probs=75.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc----cc--CCC---C
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EPV---N 401 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~----~~--~~~---~ 401 (516)
.||.|+|| |..|..+|..++.. |+ ...++++|++--+ +.+...+.++.+ .. ..+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-----g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-----DV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 38999998 99999999987653 54 2479999984211 112222222111 00 111 2
Q ss_pred CHHHHhcccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--C
Q 010154 402 NLLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--G 465 (516)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G 465 (516)
+ .+.+++ .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||. .+....+++++. .
T Consensus 66 d-~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~ 139 (309)
T cd05294 66 D-LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDK 139 (309)
T ss_pred C-HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCH
Confidence 4 445776 89888555432 2 24567888888889999999999996 555555655431 2
Q ss_pred cEEEecCC
Q 010154 466 RAIFASGS 473 (516)
Q Consensus 466 ~aifAsGS 473 (516)
+-+|++|.
T Consensus 140 ~~viG~gt 147 (309)
T cd05294 140 NRVFGLGT 147 (309)
T ss_pred HHEeeccc
Confidence 34777764
No 148
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.60 E-value=2.2 Score=44.28 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..|-+++.++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~-------------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR-------------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456778888888999999999999999986 578888888754 24 245556542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
..+|.+.++. +|++|-..+.++.|++|+|+
T Consensus 191 ----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 149
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.60 E-value=2.2 Score=44.53 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
+-.-+|-+|++.=|+..|.+++.++++++|.+ ..|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 33456778888888999999999999999985 578888888754 2221 01345555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.++|.+.++. +|++|-..+.++.+++|+|+ +..+|+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1358888987 99999999999999999997 555666443
No 150
>PLN02602 lactate dehydrogenase
Probab=87.55 E-value=1.3 Score=47.06 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=80.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCC---CCHHHHhc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~---~~L~eav~ 408 (516)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+..+ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 365 3689999974211111111233222 22211 111 34544 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEec
Q 010154 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 471 (516)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAs 471 (516)
+ +|++|=+.+.+ | -|. ++++.|.+++.+-+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 99998555443 3 233 6788888899999999999996 777777777763 1457777
Q ss_pred CCC
Q 010154 472 GSP 474 (516)
Q Consensus 472 GSP 474 (516)
|.-
T Consensus 179 gt~ 181 (350)
T PLN02602 179 GTN 181 (350)
T ss_pred cch
Confidence 743
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.49 E-value=5.9 Score=41.15 Aligned_cols=135 Identities=11% Similarity=0.055 Sum_probs=81.8
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998653 32 54 6888887511 0101 0 01247899
Q ss_pred HhcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCC--cee
Q 010154 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFE 479 (516)
Q Consensus 406 av~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~--pv~ 479 (516)
+++. .|+++=.- ..-++|+++.++.|. +..++.=.|.-..--|-.-.+|++ +|+...|.=-=|+ |..
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a~lDV~~~EP~~ 242 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARADVVDKNDMLNFLR--NHNDKYYLSDVWWNEPII 242 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCccccCHHHHHHHHH--cCCceEEEEccCCCCCCC
Confidence 8876 89887332 123688999999997 577888777644223333334443 4544332111111 110
Q ss_pred eCCEEeccccccceeecccch
Q 010154 480 YNGKVFVPGQVYNHNHFAFAK 500 (516)
Q Consensus 480 ~~Grt~~p~Q~NN~yiFPGig 500 (516)
-+ ....|+++=|=++
T Consensus 243 ~~------~~~~nviiTPHi~ 257 (303)
T PRK06436 243 TE------TNPDNVILSPHVA 257 (303)
T ss_pred cc------CCCCCEEECCccc
Confidence 01 1457889888764
No 152
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.43 E-value=1.8 Score=44.20 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=62.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc-C
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~v-k 411 (516)
||-|+|.|..|..+|..+.+. | .++.+.|+. ..+ .+..++. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 799999999999999998653 4 356666652 111 1111111 111224566655432 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 457 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe 457 (516)
+|++|= +...+ ..+++++.++.. .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 888999888764 3568999999875 444444
No 153
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.43 E-value=0.27 Score=45.94 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=50.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC-------------CcccCCCccCCchhchhhcc
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 395 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~-------------GLi~~~R~~~l~~~k~~~A~ 395 (516)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5668999999999999999998653 53 34444442 0111 00000100 00222
Q ss_pred c----cCC--CCCHHHHhcccCCcEEEEcc-----CCCCCCCHHHHHHHH
Q 010154 396 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 434 (516)
Q Consensus 396 ~----~~~--~~~L~eav~~vkptvLIG~S-----~~~g~Ft~evv~~Ma 434 (516)
. .+. ...|.+.++. .|++|+.. ..+-+||+|+++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 111 1368888887 89999753 344699999999997
No 154
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.32 E-value=1.4 Score=48.46 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=64.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh------------chhhccc--c
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 397 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~------------k~~~A~~--~ 397 (516)
.||.|+|+|..|.+||..++.+ |. ++.+.|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998764 54 57778863 1110001000 0001100 0
Q ss_pred CCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEEEecCCC
Q 010154 398 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 474 (516)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w--t~G~aifAsGSP 474 (516)
....++.|++++ .|++| .+..... +.+++.+.+.+..+.-.|++.|--. .+ +.+.-+. ..++++++ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 122578888876 78777 4443332 4555655555544444555444222 22 2222121 24455544 57
Q ss_pred CCcee
Q 010154 475 FDPFE 479 (516)
Q Consensus 475 f~pv~ 479 (516)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 77764
No 155
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.30 E-value=0.6 Score=46.71 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 578899999999999999999999775 75 789999986
No 156
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.28 E-value=2.4 Score=44.03 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
+=.-+|-+|++.=++..|-+++.++++++|.+ ..|--+|.||.. .|. .+.+|+|+ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 44567788889999999999999999999986 578888888854 242 35555553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
++|.+.++. +|++|-..+.++.|++++|+ +.-||.=-.
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 358888887 99999999999999999997 455665433
No 157
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.00 E-value=0.6 Score=45.22 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 578899999999999999999999875 76 7899999874
No 158
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.89 E-value=0.95 Score=46.40 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=53.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhch--------hhccccCCCCCH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--------PWAHEHEPVNNL 403 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--------~~A~~~~~~~~L 403 (516)
.||.|+|+|+.|.++|..+... | .++.++|+.. ++.+.+....+ ..........++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~----~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRP----EFAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCH----HHHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4899999999999999998764 4 3477777631 11011111100 000000122478
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.|+++. .|++|=+-. . ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v~-~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAVP-S-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEECc-h-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888765 677663322 2 23577776665 334666678864
No 159
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.87 E-value=3.8 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998663 53 68888874
No 160
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.75 E-value=1.2 Score=44.93 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCC-CccCCch--hc-hhhccccCCCCCHHHHhc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 408 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~-R~~~l~~--~k-~~~A~~~~~~~~L~eav~ 408 (516)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 357777774211100 0000000 00 000000011246777877
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010154 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (516)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (516)
. +|++| ++... ...+++++.+.+. .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 5 78777 33323 3678888887754 34568888887543
No 161
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.48 E-value=2.3 Score=43.62 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc-cc---CCCCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EH---EPVNN 402 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~-~~---~~~~~ 402 (516)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-..+ ++. | .++. +. ....-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sN----lnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTN----TNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccc----ccc-c-cccChhhcChHHHHH
Confidence 468899999999999999999999875 75 789999987443332 432 1 1221 10 01124
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010154 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (516)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (516)
+.+.+..+.|++-|-.- ...+++|-+...-...-.=||-+.-|+..+
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 66667777777765433 224565555444322223466666666533
No 162
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.38 E-value=6.4 Score=40.83 Aligned_cols=135 Identities=13% Similarity=0.207 Sum_probs=86.7
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 010154 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (516)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Al~~~------------------------g~~L~d~riv~~GAGsAg~GIA~ll 350 (516)
..|.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666321 235556677777766532 2468999999999999999999988
Q ss_pred HHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCC
Q 010154 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 426 (516)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~----S~~~g~Ft 426 (516)
. ++ |+ +|+.+|+.+- .. + ..+ ...+|.|+++. .|+++=. ....+.|+
T Consensus 165 ~-~f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred h-hc----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 4 33 54 6888888421 10 0 011 12479999987 8988732 22347999
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEE
Q 010154 427 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAI 468 (516)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~--wt~G~ai 468 (516)
++.++.|. +..++.=.|. .++-=|+|+. ...|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999997 6777776554 3444443331 1356654
No 163
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.14 E-value=2.8 Score=41.48 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=59.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 42 125678887631 1122222211 01112466777764
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+|++| ++..+ ...+++++.+.... ..+|..++|-++
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 77776 44433 45778888887544 358888888763
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.12 E-value=1.2 Score=48.86 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=63.3
Q ss_pred eEeeeCCCchHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHhCC--------CcccceEEEeCcchHHHHHH
Q 010154 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (516)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Al~~~g~--------~L~d~riv~~GAGsAg~GIA 347 (516)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... ...+..+||+|||+||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777788889999973 455 45777778888888888888875322 24456899999999999999
Q ss_pred HHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 98865 364 55666654
No 165
>PRK07574 formate dehydrogenase; Provisional
Probab=86.10 E-value=7.7 Score=41.81 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=84.9
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 3458999999999999999999998643 54 5777887431 00 0 0 0011 1111357999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceee-
Q 010154 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY- 480 (516)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~- 480 (516)
+++. .|+++=.-- ..++|+++.+..|. +..++.=.|.=.---|..-.+|++ .|+.-.|..-=|.+--.
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~EPlp 317 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFPQPAP 317 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCCCCCC
Confidence 9987 898874321 13689999999997 567888766543223333334443 46655454322211100
Q ss_pred CCEEeccccccceeecccchH
Q 010154 481 NGKVFVPGQVYNHNHFAFAKI 501 (516)
Q Consensus 481 ~Grt~~p~Q~NN~yiFPGigl 501 (516)
....+ -+..|+.+-|=+|-
T Consensus 318 ~d~pL--~~~pNvilTPHiag 336 (385)
T PRK07574 318 ADHPW--RTMPRNGMTPHISG 336 (385)
T ss_pred CCChH--HhCCCeEECCcccc
Confidence 00000 23458888886663
No 166
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.09 E-value=1.2 Score=48.80 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHh--------CCCccc
Q 010154 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAE 331 (516)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Al~~~--------g~~L~d 331 (516)
.+.+..+.... |+ |..|=+....-.++.++|.- .+| ++||+..+.+....+-+++.++.. ...-.+
T Consensus 136 v~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 212 (515)
T TIGR03140 136 VQALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP 212 (515)
T ss_pred HHHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC
Confidence 34444444444 43 55565777788889999974 455 358887788888888888877654 122445
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
.+++|+|||+||+..|..+..
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999988765
No 167
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.98 E-value=0.69 Score=44.85 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=53.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc---cCC-CC
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEP-VN 401 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~---~~~-~~ 401 (516)
-++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|+. +.|... ..+ ..
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~ 78 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAE 78 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHH
Confidence 3678999999999999999999999875 76 7999999873 2221 2332 122221 111 13
Q ss_pred CHHHHhcccCCcEEEEccC
Q 010154 402 NLLDAVKVIKPTILIGSSG 420 (516)
Q Consensus 402 ~L~eav~~vkptvLIG~S~ 420 (516)
.+.+.++.+.|++-|=...
T Consensus 79 a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 79 ASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHHCCCCEEEEEe
Confidence 5778888889998775443
No 168
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.97 E-value=1.8 Score=43.23 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCC-CccCCch--hchhhccccCCCCCHHHHhcc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FKKPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~-R~~~l~~--~k~~~A~~~~~~~~L~eav~~ 409 (516)
||.|+|+|+.|..+|..|.+. | .+++++++ +--... +...+.- .....-.......+..++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999998653 4 45778877 210000 0000100 000000000112456665554
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010154 410 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (516)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (516)
+|++|=+... ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 7866633332 3578899988763 34567888999863
No 169
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=85.83 E-value=0.43 Score=57.03 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++|++.||+++|||..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 578899999999999999999999886 55211 13689999986
No 170
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.74 E-value=2.6 Score=44.81 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=64.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCH-H
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNL-L 404 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~--~~~L-~ 404 (516)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|++.- +.+......+...... ..+. .
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~------~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEE------DQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCch------HHHHHHHHHHHhcCCEEEeCCcch
Confidence 36788999999999999999998763 5 47899988530 0111111111100000 0111 1
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEE
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 484 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt 484 (516)
+.+. ++|++|-.++.. .-.+++..+=. ..-||+ + .+|+.... ...+.|--||| +|||
T Consensus 64 ~~~~--~~d~vv~~~g~~-~~~~~~~~a~~--~~i~~~---~----~~~~~~~~----~~~~vI~ITGS-------~GKT 120 (450)
T PRK14106 64 EFLE--GVDLVVVSPGVP-LDSPPVVQAHK--KGIEVI---G----EVELAYRF----SKAPIVAITGT-------NGKT 120 (450)
T ss_pred hHhh--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE---e----HHHHHHhh----cCCCEEEEeCC-------CchH
Confidence 2233 489888766643 45665555432 245664 2 23333332 22678888998 6765
Q ss_pred e
Q 010154 485 F 485 (516)
Q Consensus 485 ~ 485 (516)
-
T Consensus 121 T 121 (450)
T PRK14106 121 T 121 (450)
T ss_pred H
Confidence 4
No 171
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=85.67 E-value=1.2 Score=43.46 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=68.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 406 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~-----~~~L~ea 406 (516)
||+|+||||+-.. .++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998554 34444444434443 4689999985 23311111222333332 122 2589999
Q ss_pred hcccCCcEEE---------------------EccC-------CCCCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 407 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 407 v~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+++ +|.+| |+-+ .+|.|. .|+.+.|.+.+++--|+=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 99888 3222 223332 58899999999999999999998
Q ss_pred CCCCCH
Q 010154 451 QSECTA 456 (516)
Q Consensus 451 ~~Ectp 456 (516)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 56654
No 172
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.65 E-value=2.5 Score=42.04 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=55.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~-R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
||.|+|+|+.|..+|..+.+. | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988653 4 468888874211000 0000100000000000112345554 4 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (516)
+|++| ++... .-++++++.++..- ++-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 88877 44433 34689999998643 334666799975
No 173
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.44 E-value=2 Score=44.99 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.||.|+|||..|.|||..++.+ |. ++.+.|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998764 54 5667775
No 174
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=85.42 E-value=0.62 Score=51.05 Aligned_cols=124 Identities=18% Similarity=0.341 Sum_probs=81.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCCC-----CCH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPV-----NNL 403 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~-----~~L 403 (516)
+..||+|+||||.. -++++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+. .|+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 4667777666656665 3789999973 44432111122233332 2222 589
Q ss_pred HHHhcccCCcEEE---------------------Ec-----cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 010154 404 LDAVKVIKPTILI---------------------GS-----SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 404 ~eav~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.+|+++ +|-+| |+ .++||.|. -|+++.|-+.++.--++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 88776 11 23334332 47899999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 010154 450 SQSECTAEEAYTWSKG-RAI 468 (516)
Q Consensus 450 ~~~Ectpe~A~~wt~G-~ai 468 (516)
+++|- -+++|+.. +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77764 44555554 444
No 175
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.39 E-value=8.4 Score=40.38 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=75.0
Q ss_pred CCCceecc-CC--cchHHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 010154 298 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (516)
Q Consensus 298 ~~~~~FnD-Di--QGTaaV~LAgll~Al~~-------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (516)
..+.+.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~--- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG--- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh---
Confidence 35555553 22 23444566666666553 2346889999999999999999998854
Q ss_pred hhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc-CC---CCCCCHHHHH
Q 010154 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS-GV---GRTFTKEVIE 431 (516)
Q Consensus 356 ~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S-~~---~g~Ft~evv~ 431 (516)
.|. +++.+|+.- +. .. .+.+ ...+|.++++. .|+++=.- .. -+.|.++++.
T Consensus 168 --~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 168 --FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred --CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 253 678888641 10 00 1111 23479999987 88777332 11 1567888888
Q ss_pred HHHcCCCCcEEEEcCCC
Q 010154 432 AMASFNEKPLILALSNP 448 (516)
Q Consensus 432 ~Ma~~~erPIIFaLSNP 448 (516)
.|. +..++.-.|.-
T Consensus 223 ~mk---~gavlIN~aRG 236 (330)
T PRK12480 223 HVK---KGAILVNAARG 236 (330)
T ss_pred cCC---CCcEEEEcCCc
Confidence 886 56677765553
No 176
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.37 E-value=0.47 Score=52.41 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
+...+.||||+|||.||++.|+.|++..- .-++.-||..|
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle~gf--~~~~IlEa~dR 56 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLENGF--IDVLILEASDR 56 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHHhCC--ceEEEEEeccc
Confidence 44566699999999999999999984311 12345555554
No 177
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.21 E-value=3.7 Score=42.89 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 356778888888999999999999999986 578888888754 23210 0124444442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
.++|.+.++. +|++|-..+.++.+++|+|+ +..+|.=
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVID 231 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVID 231 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1368888886 99999999999999999997 4556543
No 178
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.16 E-value=1.4 Score=40.65 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999973 23 5788886643
No 179
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.94 E-value=3.9 Score=42.53 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
=.-+|-.|++.=++..|.+++.++++++|.+ ..|.-+|.||.. .|. .+.+|.|+ .
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~-------T----- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK-------T----- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------C-----
Confidence 3466778888889999999999999999975 578888888754 242 34555442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.+|.+.++. +|++|-..+.++.|+.|+|+
T Consensus 191 ------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 ------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 258888887 99999999999999999997
No 180
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.84 E-value=1.5 Score=45.22 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=76.5
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 010154 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (516)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvL 415 (516)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=...+-.-+|.+..-.+.++..-..+-.+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 255 36899999842211211112332221111110001223466776 9999
Q ss_pred EEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecCCC
Q 010154 416 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSP 474 (516)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAsGSP 474 (516)
|=+.+.+ |- +=+++++.+.+++..-+|+-.|||. ++...-+.+++.= +-+|++|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccch
Confidence 8665553 21 1246778888899999999999996 6777777776521 347887643
No 181
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.49 E-value=7.5 Score=40.45 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=98.3
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 010154 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (516)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Al~~~------------------------g~~L~d~riv~~GAGsAg~GIA~ll 350 (516)
..+.+.|--- +.+|=-+++-+|+..|.. +..|.++++.|+|.|..|..+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 3566666322 345555677777765532 2358899999999999999999998
Q ss_pred HHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEc----cCCCCCCC
Q 010154 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 426 (516)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~----S~~~g~Ft 426 (516)
. ++ |+ +++.+|+.+ ... . + ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~-~f----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 E-AF----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred h-hC----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 5 32 64 566677642 110 0 0 12379999987 8998832 22347999
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCC--ceeeCCEEeccccccceeecccchHH
Q 010154 427 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFEYNGKVFVPGQVYNHNHFAFAKIP 502 (516)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~--pv~~~Grt~~p~Q~NN~yiFPGiglg 502 (516)
++.+..|. +..++.=.|.-.---|-.--+|++ +|+.--|.=-=|. |..-+. ...--+..|+++-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~-pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGN-PLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCC-chhhcCCCCEEECCccccC
Confidence 99999997 567777666533222222223433 5665433211111 111111 1110035689999987743
No 182
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.47 E-value=4.5 Score=41.82 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=69.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLD 405 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~---~~~~~~L~e 405 (516)
....+++|+|+|..|..+++.+... .+ .++|+++|+. .++ ...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999999876553 13 2678888763 222 22233333221 112368899
Q ss_pred HhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHHhcccCCcEEEe
Q 010154 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEAYTWSKGRAIFA 470 (516)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~A~~wt~G~aifA 470 (516)
++++ .|++|-+++.. .+|+.++++. .-.|-+. |++..+-|+.++-. + .++.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~~-~--~a~~~vD 241 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEAI-R--RASVYVD 241 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHHH-h--cCcEEEc
Confidence 9986 99998776543 3467666532 2244444 55666789998643 2 3455543
No 183
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.14 E-value=4.2 Score=42.28 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc
Q 010154 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (516)
+=.-+|-.|++.=++..|-+|++.++|++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 33567788889999999999999999999986 578888888854 242 35555542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 388 ~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.++. +|++|-..+.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1257777776 99999999999999999996
No 184
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.08 E-value=4.2 Score=42.33 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.=++..|-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888889999999999999999975 678888888854 242 35555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
..+|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1258888887 99999999999999999996
No 185
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=84.06 E-value=7.9 Score=40.32 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEE
Q 010154 309 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~----------------g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (516)
..|--+++-+|+..|.. +..++++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666655432 3468899999999999999999998743 64 56777
Q ss_pred cCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010154 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 448 (516)
Q Consensus 373 Ds~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (516)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR- 227 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR- 227 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC-
Confidence 7621 11 11111 11 123579999987 898873221 12578888888886 4567665554
Q ss_pred CCCCCCCHHHHh--cccCCcEEEecCCCCCceeeCCEEeccccccceeecccchH
Q 010154 449 TSQSECTAEEAY--TWSKGRAIFASGSPFDPFEYNGKVFVPGQVYNHNHFAFAKI 501 (516)
Q Consensus 449 t~~~Ectpe~A~--~wt~G~aifAsGSPf~pv~~~Grt~~p~Q~NN~yiFPGigl 501 (516)
.++--|+|+ ....|+.--|.--=|++--.... ..--+..|+++-|=+|-
T Consensus 228 ---G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHiag 278 (312)
T PRK15469 228 ---GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVAA 278 (312)
T ss_pred ---ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCCC
Confidence 455544444 22356544332222221111000 00124568888887664
No 186
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.00 E-value=11 Score=38.33 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~ 395 (516)
+..+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+. .+| ++-.++-=|.
T Consensus 156 ~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~----~~~---~~~a~~lGa~ 216 (343)
T PRK09880 156 AVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS----PRS---LSLAREMGAD 216 (343)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC----HHH---HHHHHHcCCc
Confidence 333555655443 36889999999988877665443 2 353 577777753 111 1111110011
Q ss_pred c--cCCCCCHHHHhccc-CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 010154 396 E--HEPVNNLLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 460 (516)
Q Consensus 396 ~--~~~~~~L~eav~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~ 460 (516)
. .....++.+.++.- ++|++|=+++.+ ..-++.++.|+. .-.|.-+..+...++..+.+.+
T Consensus 217 ~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~~---~G~iv~~G~~~~~~~~~~~~~~ 280 (343)
T PRK09880 217 KLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTRA---KGVMVQVGMGGAPPEFPMMTLI 280 (343)
T ss_pred EEecCCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhhc---CCEEEEEccCCCCCccCHHHHH
Confidence 0 00112344444322 378888777643 223456666652 2233333333333556655543
No 187
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.64 E-value=6.2 Score=42.62 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=63.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccC---CCCCHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNLLD 405 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~---~~~~L~e 405 (516)
+...||+|+|.|-.|+++|++|... |. .+.++|.+- . ....+.-..+....- ......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~~----~--~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKKS----E--EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--ccchHHHHHHHhCCCEEEeCCCChH
Confidence 5567999999999999999998653 63 577888642 0 001110011111000 0011234
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEe
Q 010154 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (516)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~ 485 (516)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ | |+ |-++++.+.+.|--||| +|||-
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s------~~--e~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S------EM--EEFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE---e------ch--HHhhhhcCCCEEEEECC-------CCHHH
Confidence 344 378776443433 23455555554 346775 2 22 23344445578888998 77653
No 188
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.52 E-value=2.6 Score=42.34 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.|++.+++..+...+..+++|+|+|.+|.+++..+.+. | .+++++|+
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R 148 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeC
Confidence 45666666545556678999999998888888777542 4 36888886
No 189
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.50 E-value=1.6 Score=39.38 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
||+++|+|..|..+|+.|+.. |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999775 65 7899999863
No 190
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=83.07 E-value=4.4 Score=43.59 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.-|+..+.+++.+++||+|-+ -.|.-+|.||... |. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~-----~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQRE-----DA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHC-----CC-------eEEEeCCC--------------
Confidence 355667788889999999999999999975 5677888887542 32 35555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.++. +|++|-..+.++.++.|+|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1368888887 99999999999999999997
No 191
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.96 E-value=5.4 Score=41.52 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..+-+++.++++++|-+ ..|.-+|.||... | ..+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER-----H-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHC-----C-------CEEEEeCCC--------------
Confidence 456778888889999999999999999986 5688888887542 3 235555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
.++|.+.++. +|++|-..+.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 192
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.91 E-value=10 Score=40.89 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=102.4
Q ss_pred cCCCceeccCCc---chHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 010154 297 GTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (516)
Q Consensus 297 r~~~~~FnDDiQ---GTaaV~LAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (516)
+..++|+|---- .+|=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 468999995422 3455568888887763 24568999999999999999999988542
Q ss_pred hhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHH
Q 010154 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIE 431 (516)
Q Consensus 356 ~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~ 431 (516)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.- ...++|+++.++
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 64 677788631 1 0000 01 123479999987 88877321 123689999999
Q ss_pred HHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCC-C--CceeeCCEEe-ccccccceeecccchHHH
Q 010154 432 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-F--DPFEYNGKVF-VPGQVYNHNHFAFAKIPI 503 (516)
Q Consensus 432 ~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSP-f--~pv~~~Grt~-~p~Q~NN~yiFPGiglg~ 503 (516)
.|. +..++.-.|.-.---|-.--+|++ .|+ |.+.|.- | +|..-+.... .--+..|+++-|=+|-..
T Consensus 228 ~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t 297 (409)
T PRK11790 228 LMK---PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGST 297 (409)
T ss_pred cCC---CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCH
Confidence 996 566777666543222222233443 455 4333321 1 1221110000 112456899999887543
No 193
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=82.84 E-value=4.2 Score=42.88 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=65.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC-CcccCCCccCCchhchhhccccCCC---CCHHHHh
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAV 407 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~~A~~~~~~---~~L~eav 407 (516)
.||.++|||..|...|-+|+. .++. +.+.|+|-. +...-... +|.+.. .+......+ .+ -+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 3542 479999987 11111111 233221 111110111 23 4557
Q ss_pred cccCCcEEEEc---cCCCC-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 408 KVIKPTILIGS---SGVGR-----------TFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 408 ~~vkptvLIG~---S~~~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
++ +|+.|=+ ...+| ..-+++.+++++.+.+.||+-.|||.
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 76 8888733 33445 24467888999999999999999997
No 194
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=82.80 E-value=6.2 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhcccCeEEEEcC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDS 374 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvDs 374 (516)
.||.|+|+|..|-+|+.-|... | ++ .++|+++|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCC
Confidence 5899999999999998888764 4 32 467887776
No 195
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.66 E-value=1.3 Score=46.68 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCC-c-------cCCchhchhhccc--
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 396 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R-~-------~~l~~~k~~~A~~-- 396 (516)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDTV-DLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE-cccccccCcccChhHCCChHHHHHHHHH
Confidence 578899999999999999999999765 76 78999998732 2211 0 0011112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010154 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (516)
Q Consensus 397 ---~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (516)
.+ .+ .+..+.++. .|++|-++.. .=++.++..++.....|.|++-+.
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~~ 152 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASIL 152 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 00 11 134455554 7777766542 335556777777777888887553
No 196
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=82.54 E-value=2.7 Score=43.13 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=75.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC-CcccCCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~~A~~~-~~~~~L~eav~~vk 411 (516)
|.|+|||..|..+|-.++. .|+ ...+.++|.+ .++..-. .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5799999999999976654 365 3689999973 2211111 12443332221110 01134 456776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 010154 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 473 (516)
Q Consensus 412 ptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGS 473 (516)
.|++|=+.+.+ |- +=+++.+.+.+++..-+|+-.|||. ++...-+.+++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88888554432 21 1245777888899999999999996 77777776663 2244777764
No 197
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.31 E-value=6.3 Score=41.10 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch
Q 010154 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (516)
Q Consensus 310 TaaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (516)
=.-+|-.|++.=++..|.+|+.+++|++|-+ ..|.-+|.||... |... ...+.+|.|+
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~---~AtVtvchs~------------- 190 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK-----HPDT---NATVTLLHSQ------------- 190 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhC-----cCCC---CCEEEEeCCC-------------
Confidence 3466778888889999999999999999986 5688888887542 2111 1234444331
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010154 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (516)
Q Consensus 389 ~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (516)
.++|.+.++. +|++|-..+.++.+++|+|+ +.-||+=-
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDv 228 (287)
T PRK14181 191 -----------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDV 228 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1358888887 99999999999999999997 45566543
No 198
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.28 E-value=2.7 Score=46.20 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.+ .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4788888888889999999999999888888877754 252 5777775
No 199
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.25 E-value=12 Score=41.80 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=84.5
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 010154 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (516)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (516)
..+++.|-.- +.+|=-+++-+|+..|. .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 12455567777777654 24568899999999999999999998643
Q ss_pred hcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHH
Q 010154 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (516)
Q Consensus 357 ~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (516)
|+ +++.+|+.. .+.. .. .+ .-...+|.|+++. .|+++=.- ...++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~~~-~~----~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SPER-AA----QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----ChhH-HH----hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 54 688888732 1100 00 00 0011268888876 78776332 1236888888888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEE
Q 010154 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAI 468 (516)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~ai 468 (516)
|. +..++.-.|.-..--|..--+|++ .|+.-
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~ 250 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVA 250 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCee
Confidence 86 567777666644333333334443 45543
No 200
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=81.98 E-value=7.1 Score=39.79 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=56.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhccc-
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI- 410 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~~~~~L~eav~~v- 410 (516)
||.|+|.|..|..+|+.|... | .+++++|+. ..+ . +.++... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~----~~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRN----PEA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECC----HHH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 4 357777774 111 1 1222211 1235677777765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (516)
++|++|=+-. .....++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3676653322 23455666655543 34567888887643
No 201
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.96 E-value=1.4 Score=50.48 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||..-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 568899999999999999999999876 75 79999998643
No 202
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=81.85 E-value=2.9 Score=45.36 Aligned_cols=84 Identities=12% Similarity=-0.004 Sum_probs=48.2
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccC
Q 010154 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 398 (516)
Q Consensus 319 l~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~ 398 (516)
+.++.-....|...|++++|-+.-..++++.+.+ .|+... .+ .++++.= ....+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~-~~~~~~~----~~~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AA-VTTTGSP----LLQKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EE-EeCCCCH----HHHhCCcC-cEEe---C
Confidence 4444455556778999999988888999999754 476321 11 1222100 00001110 0011 1
Q ss_pred CCCCHHHHhcccCCcEEEEccC
Q 010154 399 PVNNLLDAVKVIKPTILIGSSG 420 (516)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~ 420 (516)
+...|.+.++..+||++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2246788888889999998664
No 203
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.66 E-value=3.4 Score=42.25 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998764 4 456677764
No 204
>PRK07680 late competence protein ComER; Validated
Probab=81.65 E-value=3.4 Score=41.35 Aligned_cols=98 Identities=12% Similarity=0.257 Sum_probs=55.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkp 412 (516)
+|.|+|+|..|..+|..+... |.- ...+++++|++ ..+ .......|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~~---~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PAK---AYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HHH---HHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999988653 420 12467777763 111 111111110 00112456676664 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010154 413 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (516)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (516)
|++| ++..+ ...+++++.++.+ .++.+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7665 22233 3456777777643 24567778887663
No 205
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.64 E-value=11 Score=41.85 Aligned_cols=142 Identities=19% Similarity=0.152 Sum_probs=82.1
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 010154 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (516)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Al~~------------------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (516)
..++|.|--- +.+|=-++|.+|+..|. .|..|.++++.|+|-|..|..+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666321 23455566777766543 25578999999999999999999998542
Q ss_pred hcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHH
Q 010154 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (516)
Q Consensus 357 ~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (516)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=.- ...+.|+++.++.
T Consensus 161 --G~-------~V~~~d~~~--~~~~------~-~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER------A-EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH------H-Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 54 578888631 1100 0 000 00112468888775 77766221 2235778888887
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 010154 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (516)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aif 469 (516)
|. +..++.=.|.-.---|..--+|++ .|+.-.
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~g 250 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRA 250 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeE
Confidence 75 456766666544323333334443 455433
No 206
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.64 E-value=6.4 Score=41.23 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-.|++.=++..+.+++.++++++|.+ .-|.-+|.||... +.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 346778888889999999999999999986 5688888887542 110 00234444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
..+|.+.+++ +|++|-+.|.++.++.|+|+ +.-||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999997 555665443
No 207
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=81.31 E-value=9 Score=40.09 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 45689999999999999999999875232 54 455555421 0 00 00011 112347999
Q ss_pred HhcccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-c-ccCCcEEEecCCCCC--c
Q 010154 406 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-T-WSKGRAIFASGSPFD--P 477 (516)
Q Consensus 406 av~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~-wt~G~aifAsGSPf~--p 477 (516)
+++. .|+++=. ....|.|+++.++.|. +..++.=.|. .++--|+|+ + ..+|+.--|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9987 8987732 1123789999999997 5667775554 344333332 1 134655433211111 1
Q ss_pred eeeCCEEeccccccceeecccchHHH
Q 010154 478 FEYNGKVFVPGQVYNHNHFAFAKIPI 503 (516)
Q Consensus 478 v~~~Grt~~p~Q~NN~yiFPGiglg~ 503 (516)
...+. .--...|+.+-|=+|-..
T Consensus 268 ~~~~~---pL~~~~nvilTPHia~~t 290 (323)
T PRK15409 268 LSVDS---PLLSLPNVVAVPHIGSAT 290 (323)
T ss_pred CCCCc---hhhcCCCEEEcCcCCCCc
Confidence 10010 011346888888776443
No 208
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=81.25 E-value=2 Score=45.01 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHH
Q 010154 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (516)
Q Consensus 308 QGTaaV~LAgll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~ 352 (516)
-+||-++.-+++.+....|..|++..+-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47899999999999999999999999999998 9999999999865
No 209
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.90 E-value=2.5 Score=44.14 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=54.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc--ccCCC--ccCCchhchhhccccCCCCCHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSR--KDSLQHFKKPWAHEHEPVNNLLDA 406 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL--i~~~R--~~~l~~~k~~~A~~~~~~~~L~ea 406 (516)
..||.|+|||+-|..+|..+.+. | . -.+|..|..-. |...+ .+.+.. ...+.....-..++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHH
Confidence 37899999999999999998753 3 1 23554332211 00000 001110 00000000112467777
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 010154 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (516)
++. +|++| ++... -+.+++++.++.+ .++.+|..++|--
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 765 66555 33322 4788888888753 3344566778754
No 210
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.63 E-value=2 Score=45.70 Aligned_cols=106 Identities=23% Similarity=0.393 Sum_probs=71.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~ 404 (516)
...-|++++|.|-+|+--|++.+ |+. .++.+.|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999998764 442 467777763 333 43333344432 12234699
Q ss_pred HHhcccCCcEEEEc-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHHH
Q 010154 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 458 (516)
Q Consensus 405 eav~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~Ectpe~ 458 (516)
|++++ +|++||. +..+.+.|+|+++.|.+ ..+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp---GsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP---GSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCC---CcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9999987 45566899999999973 3343 4455677666666543
No 211
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=80.49 E-value=6.3 Score=43.37 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=80.8
Q ss_pred cceEEEeCc-chHHHHHHHHHHHH-HHh-hcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 010154 331 EHRFLFLGA-GEAGTGIAELIALE-ISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (516)
Q Consensus 331 d~riv~~GA-GsAg~GIA~ll~~~-~~~-~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav 407 (516)
=.||.|+|| |..|..+|-.|+.. +.. .+|+ -..+.++|.+-=...+-.-+|.+..-++-++-.-..+-.+.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh
Confidence 379999999 99999999988653 100 0133 257889987422222111113322222222111012335667
Q ss_pred cccCCcEEEEccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 010154 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (516)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (516)
++ .|++|=+.+.+ |- +=+++.+.+.+ .+..-||+-.|||. .+..--+++++. -.-+|.
T Consensus 175 kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViG 249 (444)
T PLN00112 175 QD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFH 249 (444)
T ss_pred Cc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEE
Confidence 76 89988665553 21 22467777888 58999999999995 677777777652 134677
Q ss_pred cCCCCC
Q 010154 471 SGSPFD 476 (516)
Q Consensus 471 sGSPf~ 476 (516)
||.-.+
T Consensus 250 tgT~LD 255 (444)
T PLN00112 250 ALTRLD 255 (444)
T ss_pred eeccHH
Confidence 775433
No 212
>PRK06153 hypothetical protein; Provisional
Probab=80.15 E-value=2.2 Score=46.30 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999875 65 789999987
No 213
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.97 E-value=15 Score=36.37 Aligned_cols=47 Identities=34% Similarity=0.437 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 316 Agll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
+..+.|++..+. ..+.+++|+|+|+.|...+.+. ++ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 344556665554 3788999999998777665543 32 364 56887764
No 214
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.86 E-value=7.7 Score=40.63 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc
Q 010154 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (516)
Q Consensus 312 aV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (516)
-+|-.|++.=++..|.+++.++++++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 139 PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~--------------- 191 (297)
T PRK14186 139 SCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR--------------- 191 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 56778888889999999999999999975 578888888854 243 34455432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010154 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (516)
Q Consensus 391 ~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (516)
..+|.+.++. +|++|-..+.++.|++++|+ +.-||.=-
T Consensus 192 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (297)
T PRK14186 192 ---------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDV 229 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1357888887 99999999999999999997 45566533
No 215
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=79.84 E-value=1.7 Score=46.47 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=62.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCC-c-------cCCchhchhhccc--
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 396 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R-~-------~~l~~~k~~~A~~-- 396 (516)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-|++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDVV-DESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCEe-cCcccccccccChhcCCChHHHHHHHHH
Confidence 678899999999999999999999875 75 68999997622 1111 0 0111112111110
Q ss_pred ---c---------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 397 ---H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 397 ---~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
. ..+ .++.+.++. .|++|-++.. .=++-++-.++..+..|.|++-+
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 011 134455554 7888766542 22444566666666788887544
No 216
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.82 E-value=3.9 Score=41.79 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=57.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCc-----hhchhhccc-cCCCCCHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~-----~~k~~~A~~-~~~~~~L~e 405 (516)
.||.|+|+|..|..+|..+.++ | .+++++|+..-...-+...+. ..+..+... -....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998764 4 368888874211000000000 000000000 0001234 4
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCC
Q 010154 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQ 451 (516)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 451 (516)
+++ ++|++|=+.... ..+++++.+.+. .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 555 388888544322 357888888764 455678888897643
No 217
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.50 E-value=6.9 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh
Q 010154 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (516)
Q Consensus 311 aaV~LAgll~Al~~~g~~L~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (516)
.-+|-+|++.=++..|.+++.+++||+|-+ -.|.-+|.||.. .|. .+.+|.|+ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 456777888888999999999999999975 567888887754 242 34455442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 010154 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (516)
Q Consensus 390 k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (516)
++|.+.++. +|++|-..+.++.++.|+|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357888887 99999999999999999997
No 218
>PLN02527 aspartate carbamoyltransferase
Probab=79.08 E-value=61 Score=33.90 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceec--cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 010154 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (516)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAG 340 (516)
.+.+..+ .+| .++ |-.-.+......+ +.+| .++||.| |+...=-.=+||=++.-.+..| ++++.||+++|.+
T Consensus 87 ~Dta~vl-s~y-~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~ 160 (306)
T PLN02527 87 EDTIRTV-EGY-SDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDL 160 (306)
T ss_pred HHHHHHH-HHh-CcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 3334333 445 333 3344554444333 3444 4799999 4333334456777777666666 5999999999987
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc-CC---CCCHHHHhcccCCcEEE
Q 010154 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTILI 416 (516)
Q Consensus 341 sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~~---~~~L~eav~~vkptvLI 416 (516)
.=+ -+++-++.++.+-.|+ ++.++-.+|+- +++....++++. .. ..++.+++++ +||+.
T Consensus 161 ~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 223 (306)
T PLN02527 161 ANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLY 223 (306)
T ss_pred CCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEE
Confidence 421 2455555554332243 57777777661 122222233321 11 2689999998 99999
Q ss_pred EccCC
Q 010154 417 GSSGV 421 (516)
Q Consensus 417 G~S~~ 421 (516)
-.+.+
T Consensus 224 t~~~q 228 (306)
T PLN02527 224 QTRIQ 228 (306)
T ss_pred ECCcc
Confidence 87654
No 219
>PLN03139 formate dehydrogenase; Provisional
Probab=79.07 E-value=20 Score=38.69 Aligned_cols=145 Identities=15% Similarity=0.050 Sum_probs=84.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... ..+ ..+. . ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~~---~~~~-~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DPE---LEKE-T--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----chh---hHhh-c--CceecCCHHH
Confidence 4569999999999999999999999642 54 5777887431 000 0110 0 0112347999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCCcee
Q 010154 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 479 (516)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSPf~pv~ 479 (516)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++--|+|+ ++ ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9987 898873321 12689999999997 5667776554 333333332 22 24665555443332111
Q ss_pred eCCEEeccccccceeecccchHH
Q 010154 480 YNGKVFVPGQVYNHNHFAFAKIP 502 (516)
Q Consensus 480 ~~Grt~~p~Q~NN~yiFPGiglg 502 (516)
... ...--+..|+.+-|=+|-.
T Consensus 323 lp~-d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred CCC-CChhhcCCCeEEccccccc
Confidence 100 0001234688888877643
No 220
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.65 E-value=11 Score=45.60 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCC---------cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhccc------------Ce---EEE
Q 010154 316 AGVVAALKLIGGT---------LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL 371 (516)
Q Consensus 316 Agll~Al~~~g~~---------L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~------------~~---i~l 371 (516)
+.+.+|++..|.. +.-.+|||.|+|-.|.|.++++...-.+ . ++.++-+ ++ +|-
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeee
Confidence 4456666555432 3358999999999999999988643111 0 1211110 11 221
Q ss_pred --EcCCCcccCCCccCCchhchhhccccCCC-CCHH-HHhcccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 010154 372 --VDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (516)
Q Consensus 372 --vDs~GLi~~~R~~~l~~~k~~~A~~~~~~-~~L~-eav~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (516)
+.+.-.+.+...+.-=+.+..|+++ +.. ..+. +++.. .|+|||.- ..+.++|+| +++.|.+
T Consensus 257 ~~~~~~~~~~~~~~~~~f~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDPSKQFDKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCCccccchhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 1111111111000000112233332 333 4454 68877 99999984 334689999 8888874
No 221
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.47 E-value=11 Score=38.07 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=26.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
..||.|+|+|..|.+||+.+... |.- ...+++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECC
Confidence 46899999999999999988653 410 1245777765
No 222
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=78.31 E-value=2.4 Score=39.28 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+|+|||.||+..|..|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999988755 365 348889986
No 223
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=78.12 E-value=2.9 Score=41.22 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
-+|+|+|||.||+..|..|.+. |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999998764 65 47888886543
No 224
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=78.06 E-value=2.1 Score=44.31 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++|++.||+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999876 75 789999987
No 225
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.05 E-value=48 Score=34.03 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
..++++|+|||..|+..+.++...+ |- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 4789999999988877766654321 31 46777776
No 226
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=78.04 E-value=10 Score=40.98 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 010154 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 341 (516)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGs 341 (516)
.++|++++.+.+|-. .+.+-+.+++.| +-+..++....+.|+..|++|+|.+.
T Consensus 248 T~~~L~~la~~~g~~---------~~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGID---------PDGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCcC---------HhHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 688888888888631 111222233332 33455666667778899999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEE
Q 010154 342 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILI 416 (516)
Q Consensus 342 Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~-----~~~~~~~L~eav~~vkptvLI 416 (516)
-.+++++.|.+. .|+.. ..+-+. +.++ +.....-+.+.. +..+...+.+.|+..|||.+|
T Consensus 301 ~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 899999998764 37632 111110 0111 101111111111 112223468899999999999
Q ss_pred Ecc
Q 010154 417 GSS 419 (516)
Q Consensus 417 G~S 419 (516)
|-|
T Consensus 366 g~~ 368 (427)
T PRK02842 366 CGL 368 (427)
T ss_pred ccC
Confidence 987
No 227
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.86 E-value=11 Score=38.33 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~~~L~eav~~vk 411 (516)
||.|+|.|..|..+|+.+... | -++++.|++ .++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g-------~~v~v~dr~----~~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----G-------HEVVGYDVN----QEA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----C-------CEEEEEECC----HHH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998653 4 357777763 111 111 2111 122357788877643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 010154 412 -PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (516)
Q Consensus 412 -ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (516)
+|++|=+ .......+++++.+... .+..+|.=+|+-.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 22333666666665432 4567888887643
No 228
>PRK06932 glycerate dehydrogenase; Provisional
Probab=76.93 E-value=28 Score=36.29 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=84.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~ea 406 (516)
..|.++++.|+|-|..|-.+|+++. ++ |+ +++.+|+.. .... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~-~f----g~-------~V~~~~~~~------~~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQ-AL----GM-------KVLYAEHKG------ASVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCc------cccc---c-------cccCCHHHH
Confidence 4688999999999999999999874 32 64 466666521 0000 0 113479999
Q ss_pred hcccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCC--ceee
Q 010154 407 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFEY 480 (516)
Q Consensus 407 v~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~--pv~~ 480 (516)
++. .|+++=. ....|.|+++.+..|. +..++.=.|.-.---|..--+|++ +|+.--|.--=|+ |...
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~~EP~~~ 267 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLVKEPPEK 267 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCCCCCCCC
Confidence 987 9998832 2234799999999996 577777666543222333334443 4665434322221 1111
Q ss_pred CCEEec-cccccceeecccchHHH
Q 010154 481 NGKVFV-PGQVYNHNHFAFAKIPI 503 (516)
Q Consensus 481 ~Grt~~-p~Q~NN~yiFPGiglg~ 503 (516)
+.--.. --+..|+++-|=+|-..
T Consensus 268 ~~pl~~~~~~~pnvilTPHia~~t 291 (314)
T PRK06932 268 DNPLIQAAKRLPNLLITPHIAWAS 291 (314)
T ss_pred CChhhHhhcCCCCEEECCccccCc
Confidence 110000 01467999999887443
No 229
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.81 E-value=5 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCccc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~ 379 (516)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998552 4 6889999887766
No 230
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.70 E-value=7.1 Score=41.48 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=28.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++.+++|.|+|..|.++|+.+.+. | .++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~-----G-------~~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKL-----G-------ANVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 5678999999999999999888653 6 368888864
No 231
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.21 E-value=18 Score=36.59 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999998653 5 368888864
No 232
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=76.19 E-value=17 Score=37.91 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=66.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~ea 406 (516)
.-.++.|+|+|.-|-.-++.+... . . -++++++|+. .++ .+.+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999877766555331 1 1 3788888873 222 222222222211 224689999
Q ss_pred hcccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010154 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (516)
Q Consensus 407 v~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~ 458 (516)
++. .||+|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99999665 333478888774 455788887543 368999864
No 233
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.06 E-value=5.8 Score=37.60 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=25.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999998 5566666766653 252 58888875
No 234
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=75.75 E-value=3.9 Score=42.95 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998763 32 2367777764
No 235
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.50 E-value=19 Score=38.51 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 309 GTaaV~LAgll~Al~~~--------------------g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
-||-++++-+|.++|-. |..++++||.|+|.|+.|..||+.|..+ | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 47778888888888753 3468899999999999999999998663 2 12
Q ss_pred EEEEcCCCcccCCCccC-CchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEE
Q 010154 369 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~-l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
|. +.+|... ....+..++. .-++.|...+ .|+++=..- ..++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 3444221 2233334443 3467777775 888874431 12689999999997 566776
Q ss_pred EcCCCCCCCCCCHHHHhccc-CCcEEEecCCCCCceeeCC-EEe-ccccccceeecccchHHHH
Q 010154 444 ALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNG-KVF-VPGQVYNHNHFAFAKIPII 504 (516)
Q Consensus 444 aLSNPt~~~Ectpe~A~~wt-~G~aifAsGSPf~pv~~~G-rt~-~p~Q~NN~yiFPGiglg~i 504 (516)
-.+.=. =|.-++.++.- .|+ |+..|- +|.-+. .+. .-.-.-|+-+-|=||-...
T Consensus 251 N~aRG~---iide~~l~eaL~sG~-i~~aGl---DVf~~EP~~~~~l~~~dnvv~~PHigs~t~ 307 (336)
T KOG0069|consen 251 NTARGA---IIDEEALVEALKSGK-IAGAGL---DVFEPEPPVDHPLLTLDNVVILPHIGSATL 307 (336)
T ss_pred eccccc---cccHHHHHHHHhcCC-cccccc---cccCCCCCCCcchhcccceeEecccccCcH
Confidence 665533 34444333322 243 455552 221110 111 1122456777777765543
No 236
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=75.34 E-value=13 Score=38.60 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=67.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~e 405 (516)
.-.++.|+|+|.-|..-++.++.. + . -++|.+.|+. .++ ...+.+.+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV--Y--N------PKRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988887776653 2 3 3678877763 222 33333333322 122468999
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHH
Q 010154 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 459 (516)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~A 459 (516)
+++. .||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 9999976533 34788888863 2335554 33234689988743
No 237
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=75.33 E-value=5.7 Score=42.02 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (516)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999976
No 238
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.01 E-value=22 Score=36.78 Aligned_cols=105 Identities=9% Similarity=0.093 Sum_probs=65.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCHHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~--~~~L~ea 406 (516)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+...... ..++.++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999999988887653 243 578888873 222 22222222211111 3578999
Q ss_pred hcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCC-CCCCCCCHHHH
Q 010154 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNP-TSQSECTAEEA 459 (516)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNP-t~~~Ectpe~A 459 (516)
+++ .|++|-++... .+|.. .++ +.--|-++.-. ..+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876543 46665 332 45567776542 24689887643
No 239
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.92 E-value=6.4 Score=43.90 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=34.4
Q ss_pred HHHHHHHHH----------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 316 AGVVAALKL----------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 316 Agll~Al~~----------~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|++.+++. .+..+++.+++|+|||.||.+|+..+.+ .| . +++++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G------~-~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG------A-RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC------C-EEEEEcCC
Confidence 456666653 1446888999999999888888777754 25 2 68888873
No 240
>PRK06270 homoserine dehydrogenase; Provisional
Probab=74.77 E-value=24 Score=37.13 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=64.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc-hhhccccC---------
Q 010154 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE--------- 398 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-~~~A~~~~--------- 398 (516)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+...+. ++..+ ..++....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22223431 122447899999888763 32211 22322211
Q ss_pred CCCCHHHHhcccCCcEEEEccCCC---CCCCHHHH-HHHHcCCCCcEEEE
Q 010154 399 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVI-EAMASFNEKPLILA 444 (516)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~---g~Ft~evv-~~Ma~~~erPIIFa 444 (516)
...++.|+++...+||+|=++... +-...+++ +++. +.++||.+
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVta 124 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTS 124 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcC
Confidence 123789999887899999876531 22335554 4454 35788873
No 241
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=74.64 E-value=4 Score=37.89 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=56.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~~~L~eav~~v 410 (516)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ . +++... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~----~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---A----EALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---H----HHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---h----hhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 67777752 111 1 222222 2234689999987
Q ss_pred CCcEEEEccCCCCCCCHHHHHH---HHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010154 411 KPTILIGSSGVGRTFTKEVIEA---MASFNEKPLILALSNPTSQSECTAEEAYT 461 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~---Ma~~~erPIIFaLSNPt~~~Ectpe~A~~ 461 (516)
.|++|=+-..+ .=.++++.. .+...+..||.=+|+-. ||.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 68777432211 223445444 23345666777777655 6655554433
No 242
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.43 E-value=4 Score=41.00 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+=
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE
Confidence 689999999999999999775 75 7899999873
No 243
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=74.40 E-value=2.3 Score=44.44 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
.+|+|+|||-||+..|..|.+.... .-++.=||+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~-~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPD-ADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCC-CCEEEEEcCC
Confidence 4799999999999999999775200 0145555554
No 244
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=74.13 E-value=3.5 Score=42.73 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=56.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc---ccCCCCCHHHHh
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~---~~~~~~~L~eav 407 (516)
-.++.|+|+|.-+..-++.+... .++ ++|++.|+. ..+ ...+...+.+ +-....+.++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877654 233 788888873 222 2233333333 111236899999
Q ss_pred cccCCcEEEEccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010154 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~ 458 (516)
+. +||++.++.... +|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 999998765443 68888886 345677776422 346887753
No 245
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=73.98 E-value=15 Score=36.09 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=52.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhc-ccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav 407 (516)
..++||.|+|.|..+. +|..+...+.+ ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4578999999997765 77777665542 110000 111222323322222211 112234445542 33222
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEE
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLIL 443 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIF 443 (516)
+ +-|++|+.|..|. |+++++.+. +...-|+|-
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 2 4799999999774 788988764 334444443
No 246
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=73.42 E-value=6.4 Score=43.45 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=62.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc---ccCCCCCHHHHhc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~---~~~~~~~L~eav~ 408 (516)
.+|-|+|.|..|.++|..|... |. ++++.|++ .++ .++..+.-.. ......++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999999763 53 57788762 222 1111111000 0113468999997
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010154 409 VI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (516)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (516)
.. +|+++| +.-.++...+++++.+.. ..+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 64 588555 333345677888877664 34577888888843
No 247
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=73.18 E-value=1.1e+02 Score=30.85 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEe
Q 010154 425 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 470 (516)
Q Consensus 425 Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifA 470 (516)
-++|.+++.++..+.|+++-++.... +.++++.-++ |-.++.
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~ 224 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVS 224 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEE
Confidence 38899999998888999987554432 6899999887 544443
No 248
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.10 E-value=9.6 Score=38.98 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=59.2
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh-chhhcc-ccCCCCCHHH
Q 010154 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAH-EHEPVNNLLD 405 (516)
Q Consensus 329 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~-k~~~A~-~~~~~~~L~e 405 (516)
++..+|+|.|| |-.|..+++.|++. | .+++.+|++---.....+.+... +..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 88888888888753 5 35777776521000000000000 001111 1122246778
Q ss_pred HhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 010154 406 AVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (516)
Q Consensus 406 av~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (516)
+++..+||++|=+.+.... .+..+++++.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888889999977764311 1345566666544 457888644
No 249
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.06 E-value=5.1 Score=38.19 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=53.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc--------------cC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------HE 398 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~--------------~~ 398 (516)
||.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999874 5 478889884221100000011100001000 01
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
-..+|.+++ + .|.+|=.-.-.--.++++.+.+.+.+..=.||
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~il 110 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTIL 110 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceE
Confidence 124777777 3 78888765544457788888888877555555
No 250
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.76 E-value=19 Score=36.35 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998764 5 367888863
No 251
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=72.66 E-value=4.6 Score=42.54 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999876 75 789999975
No 252
>PRK07877 hypothetical protein; Provisional
Probab=72.38 E-value=9.7 Score=44.39 Aligned_cols=101 Identities=21% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch----------hchhhccc
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 396 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~----------~k~~~A~~ 396 (516)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+=.+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~s----NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELS----NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEccc----ccccccCChhhcccHHHHHHHH
Confidence 57899999999999 899999888775 53 268999998743221 2333 22111110
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010154 397 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 397 -----~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (516)
.+. + .++.+.+++ .|++|-++- +.=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 246666665 788877665 234666777777777888888775
No 253
>PRK06823 ornithine cyclodeaminase; Validated
Probab=72.38 E-value=26 Score=36.68 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=67.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~ea 406 (516)
.-.++.++|+|.-+...++.+... + . -++|++.|+. .++ ...+...+.+.. ....+..++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--D------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988888776653 1 2 3788888773 222 222222221111 123689999
Q ss_pred hcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 010154 407 VKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (516)
Q Consensus 407 v~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~A 459 (516)
++. +||++-+++. ..+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 9999976433 3478888886 455677775322 3689998754
No 254
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=72.14 E-value=97 Score=34.99 Aligned_cols=185 Identities=22% Similarity=0.278 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCeeeEeeeCCCchHHH---HHHHHcCCC-----c-----e----eccCCcchHHHHHHHHH
Q 010154 257 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGTTH-----L-----V----FNDDIQGTASVVLAGVV 319 (516)
Q Consensus 257 ~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr~~~-----~-----~----FnDDiQGTaaV~LAgll 319 (516)
|-..+.-.||..+.+--||..=+==+|++ -..++ ++..|+..+ | . -|+-.--|+-=|..++=
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 34455567777777777887767777876 33333 777776311 1 1 14444446555555554
Q ss_pred HHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc-hhhccc
Q 010154 320 AALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHE 396 (516)
Q Consensus 320 ~Al~~~g--~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-~~~A~~ 396 (516)
+=++-.+ +++++.|+++-|-|--|.-.|+.|.+. | -+-|-+-|++|.|.... .++..+ ..++..
T Consensus 238 ~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~~~~ 304 (514)
T KOG2250|consen 238 AILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDLADE 304 (514)
T ss_pred HHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHHHHh
Confidence 4455555 789999999999999999999988764 4 25677899999998874 344433 233332
Q ss_pred cCCCCCHHHH--------------hcccCCcEEEEccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 010154 397 HEPVNNLLDA--------------VKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEAY 460 (516)
Q Consensus 397 ~~~~~~L~ea--------------v~~vkptvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSN-Pt~~~Ectpe~A~ 460 (516)
...++++.++ .-.-+.|+++=+.++ +.+|.|=.+.+ ++.+ |+|.==|| ||+ || +++++
T Consensus 305 k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vl 378 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVL 378 (514)
T ss_pred hccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHH
Confidence 2222222211 111258999999998 68877766665 5544 89999999 653 33 34666
Q ss_pred c
Q 010154 461 T 461 (516)
Q Consensus 461 ~ 461 (516)
+
T Consensus 379 e 379 (514)
T KOG2250|consen 379 E 379 (514)
T ss_pred H
Confidence 5
No 255
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.81 E-value=4.8 Score=41.89 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 699999986
No 256
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.64 E-value=23 Score=36.06 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 36899999999999999988653 43 2468888874
No 257
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=71.61 E-value=4.6 Score=39.39 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++|+|||.||+..|..+.+ .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999998754 25 358888864
No 258
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=70.76 E-value=12 Score=39.16 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=84.6
Q ss_pred eeeEeeeCCCchHHHHHHHHc--CCCceecc--------CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHH
Q 010154 277 VLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTG 345 (516)
Q Consensus 277 ~lIq~EDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGs-Ag~G 345 (516)
.+|||==.+.-++-.+|+.-. +++==||- ...+--.+|-+|++.-++..+.+|.+.++|++|.+. -|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 456665444445555555542 22211111 133445778899999999999999999999999974 5777
Q ss_pred HHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCC
Q 010154 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF 425 (516)
Q Consensus 346 IA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG~S~~~g~F 425 (516)
+|.+|..+ +. .+-+|+|+ .++|.+.++. +|++|-.-+.++.|
T Consensus 172 la~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 88887662 32 34455442 1357888887 99999999999999
Q ss_pred CHHHHHHHHcCCCCcEEE
Q 010154 426 TKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 426 t~evv~~Ma~~~erPIIF 443 (516)
+.|+|+ +..+|+
T Consensus 214 ~~d~vk------~gavVI 225 (283)
T COG0190 214 KADMVK------PGAVVI 225 (283)
T ss_pred cccccc------CCCEEE
Confidence 999996 455655
No 259
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=70.71 E-value=4.8 Score=42.61 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.7
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (516)
+|+|+|||.||...|..+...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 799999999999999888653
No 260
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.10 E-value=18 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvDs~ 375 (516)
+||.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999998653 3 21 2467777763
No 261
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=69.77 E-value=5.8 Score=41.64 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 589999986544
No 262
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=69.56 E-value=5.4 Score=41.66 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (516)
.|+|+|||.||+..|..+.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~ 22 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA 22 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 589999999999999888653
No 263
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=69.46 E-value=30 Score=36.63 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 010154 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (516)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAG 340 (516)
+.+.+..+. +| .++++ +-.++. .+.+.+.+| .++||+|- |-.-=-.=+||=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 344444443 45 44433 334432 333344444 47899993 22222344677777777777778999999999987
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEEE
Q 010154 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILI 416 (516)
Q Consensus 341 sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~---~~~~L~eav~~vkptvLI 416 (516)
.- ++++-++.++.+ .|+ ++.++-.+++.-.+ + .-+.-+.+++. .. ...++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 43 378877777665 474 68888887773321 1 11111233332 11 23689999998 99998
Q ss_pred Ecc
Q 010154 417 GSS 419 (516)
Q Consensus 417 G~S 419 (516)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 264
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=69.06 E-value=24 Score=37.45 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc
Q 010154 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (516)
Q Consensus 315 LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A 394 (516)
.|+.++|=.+..+. -.++.|+|+|.-+-..+ +++.+..++ ++|++.|+. . +....+...+.
T Consensus 116 AasavAa~~LA~~d--a~~laiIGaG~qA~~ql----~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l~ 176 (330)
T COG2423 116 AASAVAAKYLARKD--ASTLAIIGAGAQARTQL----EALKAVRDI------REIRVYSRD----P---EAAEAFAARLR 176 (330)
T ss_pred HHHHHHHHHhccCC--CcEEEEECCcHHHHHHH----HHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHHH
Confidence 44556665555552 24788999998755544 444333343 567776663 1 11222222222
Q ss_pred cc----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCCCCHHHHhc
Q 010154 395 HE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKP-LILALSNPTSQSECTAEEAYT 461 (516)
Q Consensus 395 ~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erP-IIFaLSNPt~~~Ectpe~A~~ 461 (516)
+. -....++++||++ +|+++.++.. .-+|+.++|+ +.- |.-.=||+-.+-|+.+|-..+
T Consensus 177 ~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 177 KRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred hhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 22 2345799999998 9999998632 3488999987 222 333345777789999986654
No 265
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=68.99 E-value=8.1 Score=33.63 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEE
Q 010154 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (516)
Q Consensus 338 GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vkptvLIG 417 (516)
|.|..|.+++++|...-.. .+ -+=..++|+++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 2346677887443333 1111122233468999999788999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 418 SSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
+++. ...++-+.+.+.+ ...+|-
T Consensus 66 ~t~~-~~~~~~~~~~L~~--G~~VVt 88 (117)
T PF03447_consen 66 CTSS-EAVAEYYEKALER--GKHVVT 88 (117)
T ss_dssp -SSC-HHHHHHHHHHHHT--TCEEEE
T ss_pred CCCc-hHHHHHHHHHHHC--CCeEEE
Confidence 9554 4566666666652 456664
No 266
>PLN02688 pyrroline-5-carboxylate reductase
Probab=68.91 E-value=14 Score=36.57 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEE-cC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DS 374 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-Ds 374 (516)
||.|+|.|..|.++|+-|.+. |.- -..+|+++ |+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r 36 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDS 36 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCC
Confidence 689999999999999998753 420 12467777 54
No 267
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.86 E-value=6.6 Score=41.25 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999875 75 789999986
No 268
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=68.48 E-value=34 Score=36.12 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=83.0
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCC
Q 010154 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (516)
Q Consensus 324 ~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~-A~~~~~~~~ 402 (516)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 3456788999999999999999999986 43 54 4555555322 1111111 22 123
Q ss_pred HHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCC---C
Q 010154 403 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP---F 475 (516)
Q Consensus 403 L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSP---f 475 (516)
|.|.++. .|+++-..- ..++|+++.++.|. +.-++.=.|.=.--=|----+|++ +| -|.+-|.- +
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaRG~~VDe~ALi~AL~--~g-~i~gaglDV~e~ 265 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTARGGLVDEQALIDALK--SG-KIAGAGLDVFEN 265 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hC-CcceEEeeecCC
Confidence 8898987 999885431 12699999999997 455665444432222222234443 23 34444421 0
Q ss_pred CceeeCCEEe-ccccccceeecccchHHHH
Q 010154 476 DPFEYNGKVF-VPGQVYNHNHFAFAKIPII 504 (516)
Q Consensus 476 ~pv~~~Grt~-~p~Q~NN~yiFPGiglg~i 504 (516)
+|...+-.-. .++. .|+.+-|=+|.+..
T Consensus 266 Ep~~~d~~l~~l~~~-~~vvltPHia~at~ 294 (324)
T COG1052 266 EPALFDHPLLRLDNF-PNVVLTPHIASATE 294 (324)
T ss_pred CCCCCChhHhhccCC-CCEEEccccccccH
Confidence 1111111111 1333 56888887777653
No 269
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=68.40 E-value=5.6 Score=39.51 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-++|++-|++++|+|.-|..+++.++.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 4678999999999999999999999875 65 569999986
No 270
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.33 E-value=14 Score=37.77 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=55.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc--hhhccccCCCCCHHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAHEHEPVNNLLDA 406 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k--~~~A~~~~~~~~L~ea 406 (516)
-...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-.. ..+........+-.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999888664 4 34555555321 111101110000 0000000011112223
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010154 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (516)
+. .+|++| ++... .-++++++.+... .++.+|..|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 368777 44433 3468888887653 35667888998764
No 271
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=68.16 E-value=6.5 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.+|+|+|||.+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998763 4 4688898864
No 272
>PRK08618 ornithine cyclodeaminase; Validated
Probab=68.14 E-value=13 Score=38.55 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=61.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~e 405 (516)
...++.|+|+|..|-.++..+... .++ +++.++|+. .+| ...+.+.+... .....++.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999998877665442 243 788888874 222 22222222211 112467899
Q ss_pred HhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHH
Q 010154 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAE 457 (516)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe 457 (516)
+++. .|++|-++... ..|+ ++++ +..-|.++ |+--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9976 99999766433 2444 4442 34456666 332246788884
No 273
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=67.84 E-value=14 Score=40.80 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=60.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc--cCCCCCHHHHhccc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~--~~~~~~L~eav~~v 410 (516)
.|-|+|.|..|..+|..|... |. ++++.|+. ..+ .+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999663 53 57777763 221 22222221110 11235778877653
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 010154 411 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (516)
Q Consensus 411 -kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (516)
+|+++| ++-.++...+++++.+..+ .+..||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 3444556778888887654 56778988987
No 274
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=67.72 E-value=19 Score=38.01 Aligned_cols=134 Identities=18% Similarity=0.302 Sum_probs=76.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCHH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLL 404 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~--~~~L~ 404 (516)
++.+..||.++|+|..|+++|-.|+.- |++ +++.++|-+==-.++-.=+|+ |-.+|-+...- .++..
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~~~Dy~ 84 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVASKDYS 84 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEecCccc
Confidence 455678999999999999999988763 663 678899964211111111133 33455543211 12332
Q ss_pred HHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 010154 405 DAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAI 468 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~ai 468 (516)
.. + ..++.|=+.+..+. +=+.+|.++.++.++-|++--|||. ++.-=-+++.|. -..+
T Consensus 85 ~s-a--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV---DilTYv~wKLSgfP~nRV 158 (332)
T KOG1495|consen 85 VS-A--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV---DILTYVTWKLSGFPKNRV 158 (332)
T ss_pred cc-C--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch---HHHHHHHHHHcCCcccce
Confidence 21 2 24555544433321 2246777788899999999999997 443333333321 1234
Q ss_pred EecCCCCCc
Q 010154 469 FASGSPFDP 477 (516)
Q Consensus 469 fAsGSPf~p 477 (516)
|.||.-.+.
T Consensus 159 iGsGcnLDs 167 (332)
T KOG1495|consen 159 IGSGCNLDS 167 (332)
T ss_pred eccCcCccH
Confidence 555544433
No 275
>PLN02268 probable polyamine oxidase
Probab=67.72 E-value=2.4 Score=44.70 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
+|+|+|||-||+..|..|.+.-. -+..=||+.|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASF---KVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCC
Confidence 79999999999999999976311 1345566553
No 276
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.61 E-value=3.8 Score=42.03 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=27.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999998875421 0 1357999997654
No 277
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=67.05 E-value=7.5 Score=41.13 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=28.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988553 21 1378889887543
No 278
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.80 E-value=9.8 Score=37.71 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
||.|+|+|..|..+++-|... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 799999999999999998653 432 245666665
No 279
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.67 E-value=8.1 Score=37.69 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=61.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccC---CCCCHH
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNLL 404 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~---~~~~L~ 404 (516)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.+ ..+.-..++.... ....+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~ 64 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISPE----------LTENLVKLVEEGKIRWKQKEFE 64 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCC
Confidence 57899999999999999998888764 3 478888642 1111111111100 001121
Q ss_pred -HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEe
Q 010154 405 -DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 470 (516)
Q Consensus 405 -eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifA 470 (516)
+-+. ++|++|.++..+ ..++.+- ..|+ ++-++=.-.+| .+|++---.....|...+|
T Consensus 65 ~~~l~--~adlViaaT~d~-elN~~i~-~~a~--~~~lvn~~d~~---~~~~f~~Pa~~~~g~l~ia 122 (202)
T PRK06718 65 PSDIV--DAFLVIAATNDP-RVNEQVK-EDLP--ENALFNVITDA---ESGNVVFPSALHRGKLTIS 122 (202)
T ss_pred hhhcC--CceEEEEcCCCH-HHHHHHH-HHHH--hCCcEEECCCC---ccCeEEEeeEEEcCCeEEE
Confidence 2233 389999887755 5555553 3343 22233334445 3666543333456666665
No 280
>PRK06184 hypothetical protein; Provisional
Probab=66.58 E-value=7 Score=42.41 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=26.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++..|+|+|||.||+..|-+|.+. |+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-----Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-----GV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeCC
Confidence 467899999999999999888663 65 35666664
No 281
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.39 E-value=23 Score=34.58 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=41.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
||+|.|| |-.|..+++.+.+. | .+++.+++. ..| +. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6899997 99999998887652 4 357777763 111 21 1235788888889
Q ss_pred CcEEEEccCC
Q 010154 412 PTILIGSSGV 421 (516)
Q Consensus 412 ptvLIG~S~~ 421 (516)
||++|=+.+.
T Consensus 51 ~d~vi~~a~~ 60 (287)
T TIGR01214 51 PDAVVNTAAY 60 (287)
T ss_pred CCEEEECCcc
Confidence 9999987764
No 282
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=66.34 E-value=6.9 Score=36.03 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.3
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1123568999999655
No 283
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=66.09 E-value=21 Score=37.42 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
|++.||.|+|+|..|-++|..|...
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5788999999999999999998763
No 284
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=66.07 E-value=5.1 Score=45.14 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=31.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++..|.+++|||+-|++||+-|+.. |+ ++|-+||.-
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~ 373 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNG 373 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecC
Confidence 4568999999999999999999887 54 789999974
No 285
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=65.83 E-value=28 Score=40.15 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHhhCCCeeeEeeeCCCc----hHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCccc
Q 010154 256 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAE 331 (516)
Q Consensus 256 ~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d 331 (516)
+.|.+.|-|.++++.+ +-+ .||.+.. =--.+++||..+|--|+-... .++.|- ...++
T Consensus 68 ~~y~~~V~Eli~~L~~----nGF--VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~ 129 (637)
T TIGR03693 68 APYQKRVFEIGEILYK----NGF--VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKF--ELSRN 129 (637)
T ss_pred HHHHHHHHHHHHHHHh----CCc--eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhc
Confidence 3444444455544443 222 4665422 123478999876654443321 111121 12389
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-c----------CCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H----------EPV 400 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~----------~~~ 400 (516)
.||+++|.|.-|..+.-.|+. .|+ .+|..+|.+=.. ++.. .+.+. ..-|++ . ...
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~-SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEE-HALD-RIHEL-AEIAEETDDALLVQEIDFAED 195 (637)
T ss_pred ccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccc-hhhh-HHHHH-HHHHHHhCCCCceEeccCCcc
Confidence 999999999988888777655 476 688888665442 2111 01122 333332 1 122
Q ss_pred CCHHHHhcccCCcEEEEccCCCC
Q 010154 401 NNLLDAVKVIKPTILIGSSGVGR 423 (516)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g 423 (516)
.++.++++. .|++|=+|..+-
T Consensus 196 ~dl~ev~~~--~DiVi~vsDdy~ 216 (637)
T TIGR03693 196 QHLHEAFEP--ADWVLYVSDNGD 216 (637)
T ss_pred hhHHHhhcC--CcEEEEECCCCC
Confidence 478888887 799998887663
No 286
>PRK06847 hypothetical protein; Provisional
Probab=65.72 E-value=7.9 Score=39.60 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (516)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 287
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=65.58 E-value=6.3 Score=42.20 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998652 11 2368888875
No 288
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=65.56 E-value=29 Score=37.66 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=76.4
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccC--eEEEE--cCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 010154 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (516)
Q Consensus 331 d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~--~i~lv--Ds~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~e 405 (516)
-.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=...+-.-+|.+..-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 479999999 99999999987653 54110 01 34455 442111111000122222122211000123456
Q ss_pred HhcccCCcEEEEccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 010154 406 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSK--GRAI 468 (516)
Q Consensus 406 av~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt~--G~ai 468 (516)
.+++ .|++|=+.+.+ |- +=+++.+.|.++. +.-||+--|||. .+..--+++++. .+-+
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rv 191 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKN 191 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccE
Confidence 6776 89998665553 31 1245677777755 899999999995 666666666652 2457
Q ss_pred EecCCCCC
Q 010154 469 FASGSPFD 476 (516)
Q Consensus 469 fAsGSPf~ 476 (516)
|.||.-.+
T Consensus 192 iG~gT~LD 199 (387)
T TIGR01757 192 FHALTRLD 199 (387)
T ss_pred EEecchhH
Confidence 77776544
No 289
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.48 E-value=9.1 Score=35.94 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=28.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
+|++.|+||+|+|..|.-.++.|+++ | .++.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcC
Confidence 57899999999999999999988764 4 46777754
No 290
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=65.38 E-value=13 Score=39.57 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=54.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc--ccCCCccCCchhchhhccc---cCC---CCCH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HEP---VNNL 403 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~~A~~---~~~---~~~L 403 (516)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |-.+|. ..+|-.. ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999774 41 236777664311 111121 1122221 121 2578
Q ss_pred HHHhcccCCcE-EEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcC
Q 010154 404 LDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 446 (516)
Q Consensus 404 ~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLS 446 (516)
.++++. .|+ ++++++ -+-+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEe
Confidence 998886 554 455555 367778887752 23445555444
No 291
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=65.04 E-value=25 Score=35.23 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=56.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCcc--CCchhchhhcc-c-----cCCCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKPWAH-E-----HEPVN 401 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~--~l~~~k~~~A~-~-----~~~~~ 401 (516)
++.||.|+|+|..|..++..|.+. |.- ..++++.+|++- .+.. ..++.+..... + .++ .
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp-~ 68 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKP-D 68 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCH-H
Confidence 457899999999999999998753 321 134688888632 1100 01111100100 0 011 1
Q ss_pred CHHHHhcccC----CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 402 NLLDAVKVIK----PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 402 ~L~eav~~vk----ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
.+.++++.++ ++.+ +|-..| ++.+.++.+-. ..++++-.+.|..
T Consensus 69 ~~~~vl~~i~~~l~~~~i--IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p 116 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLL--ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHHhhccCCEE--EEEeCC-ccHHHHHHHcC-CCCeEEEECCCch
Confidence 2344444433 3333 555554 77888888742 3456888888865
No 292
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=64.98 E-value=5.5 Score=40.99 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..|-|+|||-.|.|||+..+.+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 65 79999984
No 293
>PRK07236 hypothetical protein; Provisional
Probab=64.80 E-value=8.6 Score=39.96 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
.+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4568999999999999999998763
No 294
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=64.65 E-value=8.3 Score=40.64 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 34689999999999999999775 54 45666665444
No 295
>PRK07233 hypothetical protein; Provisional
Probab=64.51 E-value=7.1 Score=40.44 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888663 5 356677665
No 296
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.40 E-value=8.2 Score=39.88 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (516)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 297
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=64.28 E-value=8.1 Score=38.91 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5679999999999999988754 253 688888764
No 298
>PRK06046 alanine dehydrogenase; Validated
Probab=64.18 E-value=41 Score=35.00 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~~L~e 405 (516)
.-.++.|+|+|..|...++.+... .+ -++++++|++ .++ .+...+.+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988877766442 23 3788888884 222 22223333211 112357888
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010154 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (516)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (516)
+++ .|+++-++.. ..+|..++++ +.-.|-++ |+...+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 8998877542 3478888885 23346666 4444578999874
No 299
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=64.00 E-value=31 Score=38.42 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 346899999999999999998764 53 57777754
No 300
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=63.88 E-value=11 Score=37.28 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeecc
Confidence 48999999999999999877 35 4899999983
No 301
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=63.81 E-value=25 Score=38.37 Aligned_cols=120 Identities=24% Similarity=0.269 Sum_probs=84.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCc
Q 010154 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (516)
Q Consensus 304 nDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~ 383 (516)
.|.-.||+--++-|++.| |..-+....+|+.|=|--|-|||..+.. .| .++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEec---------
Confidence 377799999999998765 5567888999999999999999988743 24 24544332
Q ss_pred cCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010154 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (516)
Q Consensus 384 ~~l~~~k~~~A~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~ 458 (516)
+|.+.-=|. +.=...++.||.+. .|++|=+++.-++++.|.++.|. +-.|.+ |-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~ 306 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAG 306 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHH
Confidence 122211122 22233579999998 99999999999999999999996 444443 322 235776654
No 302
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=63.53 E-value=21 Score=39.78 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc-C---CCCCHHHHhc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 408 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~-~---~~~~L~eav~ 408 (516)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .++....++... . ...|+.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999999763 64 57777762 322 222222222211 1 3468999987
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 010154 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (516)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (516)
.+ +|+++| ++-..+.-.++|+..+.+. .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 54 588888 4444556667776554433 4677999999855
No 303
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=63.38 E-value=30 Score=35.59 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh----------chhh
Q 010154 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (516)
Q Consensus 325 ~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~----------k~~~ 393 (516)
++..++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345577789999997 99999999888752 4 257777753 11110111110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 010154 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 394 A~-~~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (516)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11112356777775 9999988765421 2457888887765568998653
No 304
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.25 E-value=7.8 Score=40.28 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
+.+|+|+|||.||+..|-.|.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC
Confidence 46899999999999999998653
No 305
>PRK09126 hypothetical protein; Provisional
Probab=63.11 E-value=8.7 Score=39.63 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
+..|+|+|||.||+..|..|.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC
Confidence 45799999999999999998763
No 306
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=62.97 E-value=10 Score=41.56 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
+....+|+|+|||+||+..|+.+.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~ 32 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE 32 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc
Confidence 34567999999999999999988653
No 307
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=62.89 E-value=5.1 Score=32.20 Aligned_cols=21 Identities=24% Similarity=0.285 Sum_probs=18.1
Q ss_pred ceeecccchHHHHHHHHHhhh
Q 010154 492 NHNHFAFAKIPIIIFLLYFLI 512 (516)
Q Consensus 492 N~yiFPGiglg~il~~~~~~~ 512 (516)
-..+|||+|+|+.+|.+|..+
T Consensus 24 ~~~~fpG~~~G~aaf~~~v~~ 44 (57)
T PF08122_consen 24 FKNMFPGFGIGFAAFAVYVAV 44 (57)
T ss_pred HHHhcCCcHHHHHHHHHHHHH
Confidence 357899999999999998765
No 308
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=62.83 E-value=8.5 Score=39.70 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
|+|+|||.||+.+|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999987653 253 688888764
No 309
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=62.51 E-value=29 Score=36.88 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999865
No 310
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.24 E-value=11 Score=36.89 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+|++.|+||+|+|..|..-++.|+.+ | .++.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999988774 4 368888763
No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.17 E-value=15 Score=40.90 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999988754 353 47788864
No 312
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=62.10 E-value=34 Score=33.46 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=44.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh----chhhcc-ccCCCCCHHHH
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 406 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~----k~~~A~-~~~~~~~L~ea 406 (516)
||+|.|| |..|..+++.|+.. |- ..+++.+|+... ..+.+.+... ...+.. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888887 88888888887653 31 136777775211 0111111111 011111 22223467888
Q ss_pred hcccCCcEEEEccCC
Q 010154 407 VKVIKPTILIGSSGV 421 (516)
Q Consensus 407 v~~vkptvLIG~S~~ 421 (516)
++..+||++|=+++.
T Consensus 69 ~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 69 FTEHQPDAVVHFAAE 83 (317)
T ss_pred HhhcCCCEEEEcccc
Confidence 888889999988875
No 313
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.07 E-value=6.9 Score=40.37 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=65.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch------------hchhhcc
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAH 395 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~------------~k~~~A~ 395 (516)
+|++++|+++|.|-.|.-+++.|+.. |+ .+|.++|-+-+=.++-...+.. .++.+..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~ 95 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQ 95 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHh
Confidence 58899999999999999998888764 76 7899999886644332111111 1111111
Q ss_pred ccCCC-----------CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-----CCCC
Q 010154 396 EHEPV-----------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-----SNPT 449 (516)
Q Consensus 396 ~~~~~-----------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-----SNPt 449 (516)
-.+.+ .++.+-+.. .||-+|=+.-. +=++--+-+-+.+++.|+|=.+ +|||
T Consensus 96 InP~c~V~~~~~f~t~en~~~~~~~-~~DyvIDaiD~--v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPT 162 (263)
T COG1179 96 INPECEVTAINDFITEENLEDLLSK-GFDYVIDAIDS--VRAKVALIAYCRRNKIPVISSMGAGGKLDPT 162 (263)
T ss_pred hCCCceEeehHhhhCHhHHHHHhcC-CCCEEEEchhh--hHHHHHHHHHHHHcCCCEEeeccccCCCCCc
Confidence 01111 245554444 67777766542 2233333344567788999877 6787
No 314
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=62.02 E-value=11 Score=30.35 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.4
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
|+|||.+|+..|..|.+. | .++.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999998663 3 48889988643
No 315
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.21 E-value=13 Score=41.13 Aligned_cols=104 Identities=16% Similarity=0.278 Sum_probs=64.4
Q ss_pred CCCCccccchhhHHHHHHhcCCCCCCeeeEEe-ecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCe
Q 010154 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (516)
Q Consensus 199 lG~~GmgI~~GKl~LY~a~gGI~P~~~lPI~L-DvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~ 277 (516)
.||-|- ||+++-.|.|+-==-...-+.| .|+.| . |.=.-+..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~--------------------------dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-S--------------------------DLRHLLLATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-H--------------------------HHHHHHHhCC-CCc
Confidence 466663 7999999999865223555566 56633 2 2222233333 788
Q ss_pred eeEeeeCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010154 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (516)
Q Consensus 278 lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GA 339 (516)
+|-+|||... |.+=++-..+-.-+++ .-.-|+|.||||++--.-..=.|.||+|+=.
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 9999999643 4443443333333332 4667999999999865555555677777644
No 316
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=61.19 E-value=17 Score=37.63 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=66.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
+||.++|.|+.|-.|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.+.+. .+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987542 11 0123344555521 11 1223333345578888643 36
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE---EcCCCCCCCCCCHHHHhcccCCcEEEecC
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL---ALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF---aLSNPt~~~Ectpe~A~~wt~G~aifAsG 472 (516)
||+++=+.++. ++.+-..+.+.+ ..+=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999998865 555555555542 2222332 244443 122233344445678888887
No 317
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.18 E-value=9.1 Score=40.07 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988755
No 318
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=60.91 E-value=4.6 Score=42.26 Aligned_cols=118 Identities=21% Similarity=0.223 Sum_probs=60.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC----chhchhhcc-ccCCCCCHHHHhc
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAH-EHEPVNNLLDAVK 408 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l----~~~k~~~A~-~~~~~~~L~eav~ 408 (516)
|+|+|+|..|..+++.|++.. . ..++.+.|++ ..+.+.+ ...+-.+.. +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~------~~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----P------FEEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----C------E-EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCC----C------CCcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 789999999999999886631 1 1278888874 2111101 001111111 1122235888998
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecC
Q 010154 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (516)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsG 472 (516)
+ .|++|-+++.. +...++++-.+. ..+.|= .|..+...+---++|.+ .+-.+|.++|
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD-~~~~~~~~~~l~~~a~~-~g~~~l~~~G 123 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD-TSYVTEEMLALDEEAKE-AGVTALPGCG 123 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE-SS-HHHHHHHCHHHHHH-TTSEEE-S-B
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec-cchhHHHHHHHHHHHHh-hCCEEEeCcc
Confidence 7 79999988854 788888876543 345554 33212112222334432 2334566666
No 319
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=60.88 E-value=20 Score=39.05 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=48.1
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhc---
Q 010154 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA--- 394 (516)
Q Consensus 318 ll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A--- 394 (516)
+..++......|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 313 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~ 376 (456)
T TIGR01283 313 IRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGT 376 (456)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCe
Confidence 34445555567889999999888888999988754 4763 2223211 1111 10001101110
Q ss_pred --cccCCCCCHHHHhcccCCcEEEEc
Q 010154 395 --HEHEPVNNLLDAVKVIKPTILIGS 418 (516)
Q Consensus 395 --~~~~~~~~L~eav~~vkptvLIG~ 418 (516)
.+..+...+.+.++..+||++||-
T Consensus 377 ~v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 377 VMLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122457888899999999985
No 320
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=60.74 E-value=11 Score=40.98 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998775 653 377788764
No 321
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=60.50 E-value=13 Score=36.92 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc--ccCCCCCHHHH-hc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLDA-VK 408 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~--~~~~~~~L~ea-v~ 408 (516)
.+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+.+..--.+. +....+.|.+| +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 3799999999999999998763 4 578888875221111 01100000111 12222457777 65
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEE-EcCCCC
Q 010154 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLIL-ALSNPT 449 (516)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF-aLSNPt 449 (516)
. .|++|-+++.. -..-++-.|+.. ..-|-|. =..||.
T Consensus 66 ~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 D--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred c--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 5 99999888864 344455555532 2344444 355553
No 322
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=60.47 E-value=9.9 Score=41.34 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCccc--ceEEEeCcchHHHHHHHHHHHH
Q 010154 327 GTLAE--HRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 327 ~~L~d--~riv~~GAGsAg~GIA~ll~~~ 353 (516)
+++++ -.|+|+|||.||...|..+.+.
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhC
Confidence 33444 4789999999999999887653
No 323
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=60.11 E-value=11 Score=36.46 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999988754 354 577777664
No 324
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.07 E-value=12 Score=40.32 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+.+..+|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~-----G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA-----G-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 45678999999999999999988652 5 357778764
No 325
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=60.01 E-value=8.4 Score=42.08 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+.|++-+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 468899999999999999999999875 76 789999986
No 326
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.99 E-value=42 Score=33.70 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
+||.|+|+|..|.+||..++.. |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988653 53 6788885
No 327
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=59.83 E-value=12 Score=38.44 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+|+|+|||.||+..|-+|.+.- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999999886630 0154 57777773
No 328
>PRK07045 putative monooxygenase; Reviewed
Probab=59.80 E-value=11 Score=38.98 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (516)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 4799999999999999888764
No 329
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=59.79 E-value=8.9 Score=39.88 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.+|||+|+|.||+..|+.|.+. + ..-+|.+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988552 1 123677776544
No 330
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=59.55 E-value=11 Score=42.62 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=27.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-++.||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 3578999999999999999988753 53 47777764
No 331
>PRK12828 short chain dehydrogenase; Provisional
Probab=59.52 E-value=16 Score=34.08 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=25.1
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 467789999997 6666666666644 253 58888874
No 332
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.45 E-value=45 Score=35.54 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.6
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999998763 53 47788864
No 333
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.42 E-value=14 Score=39.84 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.2
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHH
Q 010154 324 LIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 324 ~~g~~L~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
..|..++.++++|+|+|.+|+.+|+.|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556778899999999999999988864
No 334
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=59.41 E-value=5.5 Score=44.38 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=32.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeE-----EEEcCCCcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI-----CLVDSKGLIVS 380 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i-----~lvDs~GLi~~ 380 (516)
+||+|+|||-||++.|..|+++.. -++.=||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999988631 23455666542 12566666654
No 335
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=59.41 E-value=15 Score=39.08 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHH
Q 010154 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 318 ll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
+..++......|...|++++|-+.-..++++.+.+
T Consensus 263 ~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 263 AWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 34445555566778899999999889999999876
No 336
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=59.40 E-value=12 Score=40.48 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-----G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-----G-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEecC
Confidence 457999999999999999888652 5 358888865
No 337
>PRK06753 hypothetical protein; Provisional
Probab=59.10 E-value=11 Score=38.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (516)
+|+|+|||.||+..|..|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999988653
No 338
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=58.49 E-value=14 Score=37.52 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 356789999999999999988775 54 67788876333
No 339
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=58.37 E-value=11 Score=38.71 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999988764 253 57777765
No 340
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.12 E-value=14 Score=39.42 Aligned_cols=86 Identities=9% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc---
Q 010154 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--- 395 (516)
Q Consensus 319 l~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~--- 395 (516)
..++......|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+..
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 4444445556789999999988888999987643 4873 2223111 1111 111111111100
Q ss_pred --ccCCCCCHHHHhcccCCcEEEEccC
Q 010154 396 --EHEPVNNLLDAVKVIKPTILIGSSG 420 (516)
Q Consensus 396 --~~~~~~~L~eav~~vkptvLIG~S~ 420 (516)
...+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 0111124668888899999999754
No 341
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=58.11 E-value=12 Score=37.84 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=28.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
.+-.++|+|||.||+..|..+.+. | .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-----G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-----G-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecCCCC
Confidence 467899999999999999887542 5 468888887543
No 342
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.04 E-value=12 Score=39.71 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999888652 5 5799999864
No 343
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.03 E-value=12 Score=40.15 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999987663 5 4788999764
No 344
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=57.96 E-value=10 Score=39.56 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
++|..-+|+++|+|..|.-+|+-|+.+ |+ ++|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 578999999999999999999999876 75 7899999863
No 345
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=57.74 E-value=12 Score=40.20 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
-.|+|+|||.||+..|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988865
No 346
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=57.72 E-value=8.4 Score=41.07 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=26.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 3556799999999999998876621 1 1358888764
No 347
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=57.60 E-value=49 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 319 l~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
+.|+.....--.+++++|+|+|+.|...+.+. ++ .|. ++++.+|+
T Consensus 174 ~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~A-k~----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 174 IGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGA-RM----AKA------SRIIAIDI 218 (368)
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEcC
Confidence 33443333334578999999998777665543 32 353 46777765
No 348
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.43 E-value=12 Score=40.15 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
.+|++|=||++|||..|.-++++|+.. |+ .+|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 478899999999999999999999874 65 67888886644
No 349
>PRK00536 speE spermidine synthase; Provisional
Probab=57.40 E-value=18 Score=37.24 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=49.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCHHHHhccc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~-~~L~eav~~v 410 (516)
.||+|+|+|-.| +++-+++. .+++.|||-++-|++--+..++.....|..+.-.+ ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh------------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY------------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc------------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999874 44554443 13899999999777554344665555443221111 1222211 13
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMA 434 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma 434 (516)
+-||+|-=|. |+++-.+.+.
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~ 158 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK 158 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH
Confidence 6899986553 6666655543
No 350
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=57.38 E-value=73 Score=29.44 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (516)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 6888888764 344456665444444
No 351
>PLN02240 UDP-glucose 4-epimerase
Probab=57.23 E-value=22 Score=35.92 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=59.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCch------hchhhcc-ccCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~------~k~~~A~-~~~~ 399 (516)
.|+..||+|.|| |-.|..+++.|++. | .+++++|+..--...+...+.. .+..+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888888887652 4 3678887542100000000000 0011111 1112
Q ss_pred CCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEc
Q 010154 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILAL 445 (516)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaL 445 (516)
..++.++++..++|++|=+.+.... -+..++++|.+.+-+.+||.=
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2356777776789999977664321 123566777665556788743
No 352
>PLN02676 polyamine oxidase
Probab=57.18 E-value=28 Score=38.33 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=20.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
...+++|+|||.+|++.|..|.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 355799999999999999998763
No 353
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.11 E-value=19 Score=34.29 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=25.2
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++.+++|.|+ |..|..+|+.+++ .| .++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46689999996 7777777777754 25 367887764
No 354
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=56.54 E-value=44 Score=34.01 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.||.|+|+|..|-.+|.-|.+. |.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999988652 531 2357888886
No 355
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=56.43 E-value=8.1 Score=41.20 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=30.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh---cCCChhcccC----eEEEEcCCCc
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGL 377 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~---~G~s~eeA~~----~i~lvDs~GL 377 (516)
++|+|+|||-||+..|..|.++.-+. .-++.=||+. +++-....|.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~ 54 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDF 54 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCE
Confidence 37999999999999999997642100 1256666665 4554444454
No 356
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=56.32 E-value=36 Score=34.31 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||.|+|+|..|.++|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777764
No 357
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=56.06 E-value=14 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999988754 24 367888875
No 358
>PLN02463 lycopene beta cyclase
Probab=56.05 E-value=13 Score=40.63 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988754 364 46677764
No 359
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.99 E-value=15 Score=37.53 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (516)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 3899999999999999988764
No 360
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=55.89 E-value=12 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999988754 364 577888753
No 361
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=55.78 E-value=12 Score=38.42 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 010154 334 FLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~ 353 (516)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999998764
No 362
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=55.64 E-value=81 Score=31.96 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566665 89999887654 58889999999 5789987
No 363
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=55.49 E-value=18 Score=37.82 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999988763 242 47889988643
No 364
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=55.26 E-value=15 Score=37.60 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
.|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-----g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-----G-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccCC
Confidence 589999999999999887652 5 35788888654
No 365
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=55.22 E-value=15 Score=37.48 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
...|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999887663 5 4688888764
No 366
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=55.21 E-value=13 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
|+|+|||.||+..|..|.+. |+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-----G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-----GL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-----CC-------EEEEEeCCC
Confidence 89999999999999887653 54 466666653
No 367
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=55.16 E-value=39 Score=36.09 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||.|+|+|..|..+|..+... | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 799999999999999998763 5 357888864
No 368
>PRK07588 hypothetical protein; Provisional
Probab=55.13 E-value=15 Score=38.21 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988865
No 369
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=55.08 E-value=15 Score=38.19 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999987755 365 45666654
No 370
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=55.01 E-value=79 Score=33.66 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 010154 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (516)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Al~~~g-~~L~d~riv~~GA 339 (516)
+.+.+..+. +| .++++ +-... +.+.+.+.+| .++||+|- |-..=-.=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvls-~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVLG-RM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHHH-Hh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 344444333 45 44333 33333 2333444444 47999993 222233456777777777776 4799999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEE
Q 010154 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTIL 415 (516)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~---~~~~L~eav~~vkptvL 415 (516)
+.- .+++-++.++.+ .|+ ++.++--+|+.-.+ + +-..-+.+++. .. -..++.|++++ +||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 632 477777776655 464 67888777763221 1 11111233332 11 12689999997 9999
Q ss_pred EEcc
Q 010154 416 IGSS 419 (516)
Q Consensus 416 IG~S 419 (516)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9764
No 371
>PRK10262 thioredoxin reductase; Provisional
Probab=54.96 E-value=11 Score=38.26 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
-+..+|+|+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999998765
No 372
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.96 E-value=26 Score=34.53 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=21.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+++|.|| |..|..+|+.+.+ .| -++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G-------~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DG-------WRVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 57999998 5566666666543 35 368888764
No 373
>PRK08013 oxidoreductase; Provisional
Probab=54.95 E-value=15 Score=38.64 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.8
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (516)
+-.|+|+|||.||+..|-.|.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~ 24 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG 24 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh
Confidence 3579999999999999977755
No 374
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=54.94 E-value=42 Score=35.27 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCHHHHhcccCCcE-EEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 401 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 401 ~~L~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
+.|.+.... .|+ ++|-|-..+ |..-++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 356666766 888 777664332 4555899999 5899997
No 375
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=54.74 E-value=14 Score=38.29 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999987754 354 57778775
No 376
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=54.70 E-value=15 Score=39.41 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++|+|||.||+.+|..+.+. | .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----N-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999887642 4 367777764
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=54.62 E-value=15 Score=38.44 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=29.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC--CcccCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSR 382 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~--GLi~~~R 382 (516)
...|+|+|||.||+..|-.|.+. |+ ++-++++. .+...+|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-----GL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccCccccccCce
Confidence 45799999999999999888663 64 57778876 4444444
No 378
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=54.52 E-value=14 Score=40.57 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888653 65 578888763
No 379
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=54.49 E-value=16 Score=40.19 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
||+++|||..|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999886 552211 2689999986
No 380
>PRK06185 hypothetical protein; Provisional
Probab=54.32 E-value=15 Score=38.28 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=26.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 34679999999999999987754 364 466777653
No 381
>PLN02568 polyamine oxidase
Probab=54.27 E-value=9 Score=42.83 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 382
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.07 E-value=26 Score=35.21 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 326 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 326 g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+.++++.+++|.|| |-.|..+|+.++ + .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La----~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA----R-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 45677889999998 445555555553 3 35 368888875
No 383
>PRK08244 hypothetical protein; Provisional
Probab=54.07 E-value=15 Score=39.80 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (516)
..|+|+|||.+|+..|-.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 4699999999999999888653
No 384
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.04 E-value=18 Score=39.25 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=55.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh---chhhcc-ccCCCCCHHHHh
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 407 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~---k~~~A~-~~~~~~~L~eav 407 (516)
.+||++|||-.|..+|..|++- |- .+|.+.|+. .+..+.+... +..... +..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998763 31 589988873 2211111111 111221 334456799999
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHc
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (516)
++ .|+.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 599887655 4588888877654
No 385
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=53.77 E-value=20 Score=37.85 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCccc
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~ 379 (516)
|+|+|||.||+.+|..|.+. + .| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CC-------CeEEEEeCCCCCC
Confidence 79999999999999877653 1 24 3577777754433
No 386
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=53.76 E-value=83 Score=29.39 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSN 447 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 447 (516)
+-|++|++|..| -|+++++.+. +...-|+|. ++|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 479999999876 7999999985 333345554 444
No 387
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=53.75 E-value=43 Score=35.06 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=57.2
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh--chhhcc-ccCCCCCHHH
Q 010154 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (516)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~~A~-~~~~~~~L~e 405 (516)
+++||+|.|| |-.|..+++.|.+. | -+++.+|+..- ..+... ...+-. +.....++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----G-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----C-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 99999999888662 5 36888886431 001110 111111 1111223555
Q ss_pred HhcccCCcEEEEccCCCC---C--------------CCHHHHHHHHcCCCCcEEEEcC
Q 010154 406 AVKVIKPTILIGSSGVGR---T--------------FTKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 406 av~~vkptvLIG~S~~~g---~--------------Ft~evv~~Ma~~~erPIIFaLS 446 (516)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899997765321 0 2355777777666678988644
No 388
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.57 E-value=17 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-----G-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEeCC
Confidence 457999999999999999888642 4 467888875
No 389
>PRK14694 putative mercuric reductase; Provisional
Probab=53.55 E-value=17 Score=39.32 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999988763 4 478889874
No 390
>PRK06392 homoserine dehydrogenase; Provisional
Probab=53.49 E-value=55 Score=34.59 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-hhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCC--CHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 405 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~-~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~----~~~~~--~L~e 405 (516)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.... .+... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKII-SYKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHH-HHHhcCccccCCCCcCCHHH
Confidence 79999999999999999866210 112331 1235567999988886531222211 11110 01112 5666
Q ss_pred HhcccCCcEEEEccC
Q 010154 406 AVKVIKPTILIGSSG 420 (516)
Q Consensus 406 av~~vkptvLIG~S~ 420 (516)
.++ .++||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999998874
No 391
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.43 E-value=15 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999988763 4 468899975
No 392
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=53.41 E-value=23 Score=37.89 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 405 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~~~~L~e 405 (516)
..|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.+ .+ .+ .+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357899999999999999999998653 65 466665431 11 11 1111 111247999
Q ss_pred HhcccCCcEEE
Q 010154 406 AVKVIKPTILI 416 (516)
Q Consensus 406 av~~vkptvLI 416 (516)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 88887
No 393
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=53.40 E-value=13 Score=42.20 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC-cccCCCc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRK 383 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G-Li~~~R~ 383 (516)
++..|+|+|||.||+..|-.|.+. .|+ ++.++|++. ....+|.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA 74 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQA 74 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCee
Confidence 456899999999999999888652 265 466777663 3333443
No 394
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=53.34 E-value=54 Score=33.04 Aligned_cols=86 Identities=12% Similarity=0.256 Sum_probs=51.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
||+|.|| |-.|..+++.|.+. | +++.+|+..- .+.-+......+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7999997 99999988877531 2 3566665311 00011112235777888888
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 010154 412 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 412 ptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 446 (516)
||++|=+.+....- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999766543211 334555555544 46887544
No 395
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.29 E-value=47 Score=35.59 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=63.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchh--chhhccccCCCCCHHHHh
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~~A~~~~~~~~L~eav 407 (516)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++.. ...+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~---~~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRC---GGFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEe---CCCC-hHHh
Confidence 57789999999999998888765 363 5778886420 0000112110 001100 0011 2334
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEe
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~ 485 (516)
+ ++|++|=.++.+ .-.+++.++.. ...||+ +.+|.-+ +....+.|--||| +|||-
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~~----~~~~~~~I~VTGT-------~GKTT 121 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELFA----REAKAPVIAITGS-------NGKST 121 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHHH----HhcCCCEEEEECC-------CcHHH
Confidence 4 378887555554 34677777665 356776 1233322 2224577888897 77653
No 396
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=53.25 E-value=15 Score=38.31 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887631 13 478888876
No 397
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=53.03 E-value=16 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+||+|||+||+..|..+.+. | +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999999888663 5 478899975
No 398
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=52.78 E-value=14 Score=38.62 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 69999999999999988754 364 56677764
No 399
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=52.78 E-value=22 Score=36.17 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GL 377 (516)
+..||+++|+|.-|.-+++.|+...+.-.++... .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCEE
Confidence 5679999999999999999998752100011100 0028999998643
No 400
>PRK12831 putative oxidoreductase; Provisional
Probab=52.74 E-value=17 Score=39.51 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 467999999999999999988763 5 357777763
No 401
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=52.64 E-value=19 Score=41.49 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 4678999999999999999998663 5 367888864
No 402
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=52.57 E-value=57 Score=32.00 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=51.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 010154 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (516)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k----~~~A~-~~~~~~~L~ea 406 (516)
||+|.|| |..|..+++.|.+. | .++.++|+. .......+.... -.+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-----g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-----G-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-----C-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 88888888777652 4 356667642 111001111110 01111 22222457777
Q ss_pred hcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEE
Q 010154 407 VKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFa 444 (516)
++..++|++|=+.+.... .+..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 876789999855543211 12355677776555678773
No 403
>PRK11445 putative oxidoreductase; Provisional
Probab=52.56 E-value=17 Score=37.63 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (516)
.|+|+|||.||...|..|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988765
No 404
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=52.48 E-value=18 Score=37.83 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
..+|+|+|||.||+..|-.|.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~ 24 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA 24 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc
Confidence 46799999999999999888653
No 405
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=52.47 E-value=16 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 899999999999999988663 5 468999975
No 406
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=52.39 E-value=18 Score=37.73 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+|+|+|||-+|+.+|..+.+. | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887652 4 368888875
No 407
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=52.27 E-value=17 Score=39.26 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999999888653 5 578999974
No 408
>PRK07538 hypothetical protein; Provisional
Probab=52.18 E-value=17 Score=38.29 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (516)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999988765
No 409
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=52.06 E-value=17 Score=38.69 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.++|+|||.||+..|..+.+. | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888653 5 47889997
No 410
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=52.04 E-value=50 Score=35.62 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=79.1
Q ss_pred HHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCC
Q 010154 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 402 (516)
Q Consensus 323 ~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~ 402 (516)
|.|..-+.....|+.|=|-.|-|+|..|.-. | .++++ |+- |.+..-|.. -+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~-----g-------~~Viv-------TEi--DPI~ALQAa--MeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKGF-----G-------ARVIV-------TEI--DPICALQAA--MEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhhc-----C-------cEEEE-------ecc--CchHHHHHH--hhccEeee
Confidence 4566667888999999999999998776332 3 34443 221 223333321 13334578
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCC---------------CHH-HHhcccCCc
Q 010154 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC---------------TAE-EAYTWSKGR 466 (516)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ec---------------tpe-~A~~wt~G~ 466 (516)
|.||++. .|+++-+++...+++.+..+.|. +.-||--+---. .|+ .|+ |=|.|.+||
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd--~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr 335 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFD--TEIDVKWLNTPALTWENVKPQVDRYILPNGK 335 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEecccccc--ceeehhhccCCcceeeecccccceeeccCCc
Confidence 9999998 99999999999999999999997 566665432211 232 222 668889998
Q ss_pred EEE
Q 010154 467 AIF 469 (516)
Q Consensus 467 aif 469 (516)
.|+
T Consensus 336 ~iI 338 (434)
T KOG1370|consen 336 HII 338 (434)
T ss_pred EEE
Confidence 876
No 411
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.94 E-value=16 Score=40.68 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999887652 4 4688888753
No 412
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=51.84 E-value=51 Score=31.38 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=90.9
Q ss_pred hhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecC--cceecCCCCCCC--ccccchhhHHHHHHhcCCCCCCeeeE
Q 010154 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (516)
Q Consensus 153 i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~~GKl~LY~a~gGI~P~~~lPI 228 (516)
+-+++.|+-++.-|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+.++-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45779999999999988888998888889988887555 211222223333 46666777777666654 445
Q ss_pred EeecCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhhCCCeeeE---eeeCCCchHHHHHHHHcCCCceecc
Q 010154 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTHLVFND 305 (516)
Q Consensus 229 ~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq---~EDf~~~~af~iL~ryr~~~~~FnD 305 (516)
++=.|..+ .....+.++-|.+++++ ++.-.++. ..+.....+.+..+++-...+ -|
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 54444211 12233457778888887 64322222 235666777765555532221 11
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010154 306 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (516)
Q Consensus 306 DiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GA 339 (516)
=|=.+....+-|++.|++..|+ -.+..++-+|.
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~-~~~~~v~g~d~ 217 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR-AGKVIVVGFDG 217 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC-TTTSEEEEEEC
T ss_pred EEEeCCChHHHHHHHHHHHcCC-cccceeecCCC
Confidence 1112223344477888888887 22333444443
No 413
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=51.81 E-value=27 Score=36.58 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=52.5
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCcc
Q 010154 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (516)
Q Consensus 305 DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~ 384 (516)
|++.+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH--
Confidence 444454444455554442333322333399999999999987433322 363 789988872 332
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEEccCC
Q 010154 385 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSGV 421 (516)
Q Consensus 385 ~l~~~k~~~A~~--~~~~~-~L~eav----~~vkptvLIG~S~~ 421 (516)
|+..++.++-+ ..... ...+.+ .+..+|+.|=+|+.
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 33333333322 11111 222222 23368999999883
No 414
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=51.77 E-value=18 Score=37.87 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977754 365 46667764
No 415
>PRK14852 hypothetical protein; Provisional
Probab=51.74 E-value=13 Score=44.74 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++|+..||+|+|+|..|..||+.|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 579999999999999999999998875 76 789999986
No 416
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=51.65 E-value=18 Score=40.97 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
..|+|+|||.+|+.+|-.|.+. |. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 5899999999999999998653 53 688999874
No 417
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=51.63 E-value=21 Score=38.72 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.4
Q ss_pred HHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEc
Q 010154 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (516)
Q Consensus 295 ryr~~~~~FnDDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (516)
+|......+.|=..||+ .++++++++|.|| |..|..+|+.+.+ .|. ++.++|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEe
Confidence 55667788999888888 2567789999998 5556666666543 352 566776
Q ss_pred CC
Q 010154 374 SK 375 (516)
Q Consensus 374 s~ 375 (516)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 418
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=51.39 E-value=18 Score=41.22 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...||+|+|||.||+..|..+... | .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----G-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 457999999999999999988653 5 357777764
No 419
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.39 E-value=18 Score=43.90 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-+..||+|+|||.||+..|..|... |. ++.++|++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4568999999999999999998663 53 57777764
No 420
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=51.36 E-value=18 Score=37.38 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999977654 364 577888764
No 421
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.34 E-value=19 Score=38.71 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=23.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
|||+|+|.||+..|-..+.. | .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~-----G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA-----G-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT-----T-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHHC-----C-------CEEEEEECCccC
Confidence 79999999999998876553 6 478899988765
No 422
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.26 E-value=10 Score=44.86 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc--CCC--CC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPV--NN 402 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~~--~~ 402 (516)
++|.++++.++|||+.|+-.-+-+++. |+.--+- ..|.+.|-+ .|.++ +|+. |--| |+. ... ..
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDmD-~IEkS---NLnR-QFLF-R~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDMD-HIEKS---NLNR-QFLF-RPWDVGKPKSEV 493 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEeccc-hhhhc---cccc-eeec-cccccCchHHHH
Confidence 689999999999999999888776553 5532111 245555543 22222 2432 1112 221 111 24
Q ss_pred HHHHhcccCCcEEE-------EccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 010154 403 LLDAVKVIKPTILI-------GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (516)
Q Consensus 403 L~eav~~vkptvLI-------G~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aif 469 (516)
-.+|+...+|++-| |-.+- ++|+.+--+.+. =++=||=|= ||..|-|.||+|
T Consensus 494 AA~A~~~mNp~l~I~a~~~rvgpeTE-~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 494 AAAAARGMNPDLNIIALQNRVGPETE-HIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHHhcCCCceeeehhhccCcccc-cccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 67889999999987 33342 478888777663 233345554 577888999987
No 423
>PRK07589 ornithine cyclodeaminase; Validated
Probab=51.21 E-value=82 Score=33.62 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=64.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~---~~~~~L~ea 406 (516)
.-.++.|+|+|.-+..-++.++... . -++|++.|+. ..+ .+.+.+.+.+.. ....+++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998877777666531 2 3678877662 222 222322332211 113689999
Q ss_pred hcccCCcEEEEccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010154 407 VKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (516)
Q Consensus 407 v~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (516)
++. +||++.++... -+|..++++. .--|-++ |+--.+-|+.++-
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 998 99999877432 3688888853 2234444 4544568998775
No 424
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=51.11 E-value=37 Score=34.71 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=56.7
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 010154 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (516)
Q Consensus 329 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~-~~~~~~~L~ea 406 (516)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..+.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 78888888887653 31 136888876421000000001000111111 21222457777
Q ss_pred hcccCCcEEEEccCCCC----CC------------CHHHHHHHHcCCCCcEEEEcC
Q 010154 407 VKVIKPTILIGSSGVGR----TF------------TKEVIEAMASFNEKPLILALS 446 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g----~F------------t~evv~~Ma~~~erPIIFaLS 446 (516)
++. +|++|=+.+... .+ +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 875 899997765431 11 234566666655567888543
No 425
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=51.08 E-value=19 Score=38.43 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999887653 4 578889973
No 426
>PRK10015 oxidoreductase; Provisional
Probab=51.07 E-value=17 Score=39.04 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
-.|+|+|||.||+..|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988765 364 466777653
No 427
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=50.87 E-value=19 Score=43.14 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=30.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC----Cccc
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIV 379 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~----GLi~ 379 (516)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEE
Confidence 4579999999999999999998763 53 57777875 5554
No 428
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=50.76 E-value=15 Score=37.91 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (516)
+|+|+|||.||+..|-.|.++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999888653
No 429
>PRK12829 short chain dehydrogenase; Provisional
Probab=50.66 E-value=33 Score=32.88 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=24.7
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+++.+++|.|| |..|..+|+++++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 5556666666643 353 58888753
No 430
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=50.61 E-value=16 Score=35.19 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.8
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++++.+++|.|| |.-|..||+.+++ .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 477889999997 5556666666654 353 57788764
No 431
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=50.58 E-value=40 Score=38.66 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=51.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
.||.|+|+|..|..+|+.+... |. ..+++.+|++ .++ ++..++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999998653 53 2468888873 111 111110 00000122356666664
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEEcC
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 446 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 446 (516)
+|++| ++... ...+++++.|++.. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 67666 44333 35567777766432 233444343
No 432
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.22 E-value=23 Score=30.20 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=51.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
.||.|+|+|..|......+.... .+. +=..++|.+ . +......+.|-- +..+|+.|.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~----~---~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPD----P---ERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSS----H---HHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCC----H---HHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 38999999999777755554320 111 223456653 1 112222222221 24478999999878
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
+|+++ +++.. ....++++...+.. .+|+.
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~~g-~~v~~ 91 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALEAG-KHVLV 91 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHHTT-SEEEE
T ss_pred CCEEE-EecCC-cchHHHHHHHHHcC-CEEEE
Confidence 99988 44434 45666666655433 25543
No 433
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=50.22 E-value=62 Score=35.11 Aligned_cols=96 Identities=18% Similarity=0.377 Sum_probs=62.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCC------chhchhhcc--ccCC----
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL------QHFKKPWAH--EHEP---- 399 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l------~~~k~~~A~--~~~~---- 399 (516)
.||.++|+|.=|..||+++-.-.. +.+.-+..=++|..+.. ..++..+| +++.-+|-. +.++
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 799999999999999999976532 33445556689998764 22211112 112223332 1122
Q ss_pred CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 010154 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (516)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (516)
..+|.|+++. +|+||= ..|--|++.+++.+..+-
T Consensus 96 v~dl~ea~~d--ADilvf--~vPhQf~~~ic~~l~g~v 129 (372)
T KOG2711|consen 96 VPDLVEAAKD--ADILVF--VVPHQFIPRICEQLKGYV 129 (372)
T ss_pred cchHHHHhcc--CCEEEE--eCChhhHHHHHHHHhccc
Confidence 2689999998 999983 234479999999987543
No 434
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.14 E-value=77 Score=32.62 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=24.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
-.+++|+|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~a-k~----~G~------~~vi~~~~ 220 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGA-RI----RGA------SRIIGVDL 220 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEcC
Confidence 4678999999998887765544 32 363 46777765
No 435
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=49.97 E-value=18 Score=43.75 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...+|+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-----G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-----GH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecc
Confidence 347999999999999999998653 53 57777765
No 436
>PRK06841 short chain dehydrogenase; Provisional
Probab=49.94 E-value=27 Score=33.40 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=25.3
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
++++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 477889999997 6666666666644 353 57777764
No 437
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=49.92 E-value=20 Score=39.95 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+-.|+|+|+|..|++||..|... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999998763 64 57888875
No 438
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=49.86 E-value=19 Score=36.82 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888653 5 357788875
No 439
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.77 E-value=1.4e+02 Score=29.34 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.2
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010154 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (516)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (516)
++.+.++. +|++|..|... .|.--++++|+. ..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a~--G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMAC--ELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHHc--CCCEEE
Confidence 46677776 89999888764 478889999995 789985
No 440
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=49.58 E-value=14 Score=41.36 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
.||+|+|||.+|+..|+.+.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
No 441
>PRK06834 hypothetical protein; Provisional
Probab=49.51 E-value=21 Score=39.17 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
.+..|+|+|||.+|+..|-.|.+. |+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 457899999999999999988663 65 466777653
No 442
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=49.49 E-value=64 Score=32.45 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.||.|+|.|..|..+|+.+... | .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----G-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4799999999999999998652 4 256777764
No 443
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=49.49 E-value=31 Score=35.57 Aligned_cols=90 Identities=20% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCHH
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 404 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~-~~L~ 404 (516)
|..++ +++|+||=--|.+||+.|... .+|+++|-+ +|-+.+-.+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-------------~eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-------------CEVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-------------ceEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 44555 999999999999999887442 279999973 2222232111011 1111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+ + .++||++|=++|-||+ +++.++.. .|=+|=.=||.+
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~~ 129 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPKG 129 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCCc
Confidence 1 1 2379999999999986 99998776 366777788883
No 444
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.45 E-value=18 Score=39.53 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..|||+|+|.+|+++|..+... |+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 4799999999999999998663 64 58888876
No 445
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.25 E-value=1.7e+02 Score=34.13 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=47.0
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCCcee
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 479 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------~Ectpe~A~~wt~G~aifAsGSPf~pv~ 479 (516)
+.++|+.+|..++.+ +.-.-+.+...+-+|=|.+=.-||... .+-|-+++.++.. + |+..-=..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~-~--~~~~~gk~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTV-A--LAKKQGKTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHH-H--HHHHcCCceEE
Confidence 446799999877743 555555444455566688888898742 2333333333211 0 11111134554
Q ss_pred eCCEEeccccccceeecccchHHH
Q 010154 480 YNGKVFVPGQVYNHNHFAFAKIPI 503 (516)
Q Consensus 480 ~~Grt~~p~Q~NN~yiFPGiglg~ 503 (516)
. .+.||.+=|-..+|-+--++
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~ 508 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAA 508 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHH
Confidence 4 24666666666666544443
No 446
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=49.21 E-value=1.4e+02 Score=31.14 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCceeccC-CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 289 AFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 289 af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
+.+.+.+| .++||+|-+ -..=-.=+|+=++.-.+..| ++++.||+++|-.. .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 44444554 478999942 22223445777776666666 49999999999863 478888777766 464
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEEcc
Q 010154 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (516)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~---~~~~~L~eav~~vkptvLIG~S 419 (516)
++.++-.+++.-... ....-+.+++. . ....++.+++++ +||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~~---~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDAD---IVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCHH---HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 688888777633211 11111233332 1 123689999997 99998764
No 447
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.90 E-value=55 Score=31.27 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.9
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++..+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356778999998 6667777776654 353 57777764
No 448
>PLN02852 ferredoxin-NADP+ reductase
Probab=48.75 E-value=12 Score=41.67 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.0
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 324 ~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
....+-...||+|+|||.||+..|..|.+.. .| -++.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3344455679999999999999999987531 23 367788876
No 449
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=48.68 E-value=20 Score=39.52 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010154 331 EHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (516)
..+|+|+|||.+|+..|..|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999988765
No 450
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.53 E-value=46 Score=33.70 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=59.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~ea 406 (516)
...+-.+++|+|+=--|..+|++|..+ .+++++|-+ ++.+.|-...-....+.--
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~------------p~~r~~lp~~v~Fr~~~~~ 95 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIH------------PFMRGFLPNNVKFRNLLKF 95 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCC------------HHHHhcCCCCccHhhhcCC
Confidence 345568999999999999999887542 578888863 2222222211111111111
Q ss_pred hcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010154 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (516)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (516)
+++ .-|++|-+++-|| .++|.++.. .|=+|-.-||++
T Consensus 96 ~~G-~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g 132 (254)
T COG4017 96 IRG-EVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG 132 (254)
T ss_pred CCC-ceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC
Confidence 222 3488999999886 788888766 466787888885
No 451
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=48.52 E-value=22 Score=38.89 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=26.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...+++|+|||.||+..|..|... |. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-----g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-----GH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 357999999999999999888652 53 57788764
No 452
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=48.33 E-value=16 Score=44.23 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 327 ~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
++|++.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 578899999999999999999999886 75 7899999864
No 453
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.32 E-value=33 Score=32.63 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=24.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 328 ~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|++.+++|.|| |.-|..+|+.+++ .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CC-------CeEEEecCC
Confidence 467789999998 4556666666543 25 367877764
No 454
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=48.32 E-value=22 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977755
No 455
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.26 E-value=1e+02 Score=30.96 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~v 410 (516)
.||.++|+ |-.|-.+++.+... .++ +=..++|++. ++.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99999988777542 122 3455677652 111111 111 1112367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (516)
++|++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888643 336666665543 5788865
No 456
>PRK05868 hypothetical protein; Validated
Probab=48.17 E-value=22 Score=37.18 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (516)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999988765
No 457
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=48.14 E-value=21 Score=38.49 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
+++|+|||-+|.-||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994433 24 678788775443
No 458
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=47.99 E-value=26 Score=35.72 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcc
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi 378 (516)
...+|+|+|+|-+|+.+|-.|.+. |. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999999888764 52 77888876653
No 459
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=47.85 E-value=24 Score=37.63 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
+-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 35699999999999999988663 5 5788999853
No 460
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.83 E-value=24 Score=38.44 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
.+...||+|+|+|-+|.++|+.+...
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC
Confidence 35667999999999999999998653
No 461
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=47.62 E-value=19 Score=39.38 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+||||+|+|-+|+..|+.+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999986642 1 2368888875
No 462
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=47.57 E-value=16 Score=32.77 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=25.9
Q ss_pred CChhhhHHHHHHHHHHHHH---hhCCCeeeEeeeCC
Q 010154 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFA 285 (516)
Q Consensus 253 ~~g~~Y~~~idefv~av~~---~fGp~~lIq~EDf~ 285 (516)
++.++||.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 4678999999999998888 57666666676663
No 463
>PRK06126 hypothetical protein; Provisional
Probab=47.29 E-value=23 Score=38.79 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.+.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 345789999999999999988765 365 46677765
No 464
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=47.27 E-value=30 Score=39.49 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc----------
Q 010154 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---------- 395 (516)
Q Consensus 327 ~~L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~---------- 395 (516)
.-+.+++|+|-|| ||.|-.+.+++++. + .++|.++|+.= .++....+++.+
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E-------~~~~~i~~el~~~~~~~~~~~~ 307 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDE-------YKLYLIDMELREKFPELKLRFY 307 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCch-------HHHHHHHHHHHhhCCCcceEEE
Confidence 3477899999998 68999999998774 3 48899998741 112222233322
Q ss_pred --ccCCCCCHHHHhcccCCcEEEEccCC
Q 010154 396 --EHEPVNNLLDAVKVIKPTILIGSSGV 421 (516)
Q Consensus 396 --~~~~~~~L~eav~~vkptvLIG~S~~ 421 (516)
+-.+...+.+++++.|||+++=+.+-
T Consensus 308 igdVrD~~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 308 IGDVRDRDRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred ecccccHHHHHHHHhcCCCceEEEhhhh
Confidence 11222468999999999999977653
No 465
>PRK09897 hypothetical protein; Provisional
Probab=47.27 E-value=26 Score=39.41 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+|+|+|||++|+.+|..|+.. + ..-+|.++|..
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12479999984
No 466
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=47.07 E-value=20 Score=38.91 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999988754 25 467788776
No 467
>PRK06182 short chain dehydrogenase; Validated
Probab=47.03 E-value=31 Score=33.71 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=39.2
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCHHHHh
Q 010154 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAV 407 (516)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~-A~~~~~~~~L~eav 407 (516)
+..+++|.|| |-.|..+|+.+.+ .| -++++++++- ++-+.+......+ .-+-....++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 3568999997 4556666666543 35 3677776631 1100011111111 11222223455556
Q ss_pred ccc-----CCcEEEEccCCC
Q 010154 408 KVI-----KPTILIGSSGVG 422 (516)
Q Consensus 408 ~~v-----kptvLIG~S~~~ 422 (516)
+.+ ++|++|=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 544 799999777643
No 468
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=46.91 E-value=12 Score=39.59 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhcccCe
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKK 368 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~-~~G~s~eeA~~~ 368 (516)
.+|+|+|||-||+..|..|.+...+ -..++.=||+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 5899999999999999988764100 012455566554
No 469
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.90 E-value=92 Score=33.27 Aligned_cols=113 Identities=25% Similarity=0.329 Sum_probs=62.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~v 410 (516)
.+||+|+|.|-.|.++|+.+.+ .|. +++..|.+- . .+.. ..+..+. ...+.....+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999998888754 352 588888641 1 1111 1111110 0111222233
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEe
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~ 485 (516)
++|++|-..+.. .-.+.+-++..+. -||| +++ |. +-++..+.+.+.|--||| +|||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 379999887776 4566777766643 3432 332 11 112222224567888998 88864
No 470
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=46.70 E-value=58 Score=33.92 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC-------CCcccCCCccCCchhchhhccccCCCCCHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS-------KGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs-------~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~ 404 (516)
.||.|+|||+.|.-.|-.|.++ | . .=.+|.-++ +||...+... +....... .+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g-~----~V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~~~--~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----G-H----DVTLLVRSRRLEALKKKGLRIEDEGG------NFTTPVVA--ATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----C-C----eEEEEecHHHHHHHHhCCeEEecCCC------cccccccc--ccCh
Confidence 4899999999999998888775 4 1 012333333 3666555321 01111000 1111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCC-cEEEEcCCCCCCCC
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK-PLILALSNPTSQSE 453 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er-PIIFaLSNPt~~~E 453 (516)
+... ++|++| ++... -.++++++.+...... .+|..|-|=-..-|
T Consensus 63 ~~~~--~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EALG--PADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhcC--CCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 1111 467666 33332 5788888888765443 35666778665555
No 471
>PRK07190 hypothetical protein; Provisional
Probab=46.60 E-value=27 Score=38.37 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=24.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
...|+|+|||.+|+..|-.+.. .|+ ++.++|+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~ 37 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKS 37 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCC
Confidence 3579999999999998876644 364 36667765
No 472
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.51 E-value=22 Score=41.22 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=47.9
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEecCCCCCcee
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFDPFE 479 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~Ectpe~A~~wt~G~aifAsGSPf~pv~ 479 (516)
+.++|+++|..++.. ++-.-+.+..++-+|=|.+=..||.. ..+-|.++.+++... |+..-=..||.
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~pv~ 490 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKTPIV 490 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCceEE
Confidence 456799999877743 55444544444555668888999863 233444444433211 12211234555
Q ss_pred eCCEEeccccccceeecccch
Q 010154 480 YNGKVFVPGQVYNHNHFAFAK 500 (516)
Q Consensus 480 ~~Grt~~p~Q~NN~yiFPGig 500 (516)
.+ +.||-.=|-..+|-+.
T Consensus 491 v~---d~pGfv~nRi~~~~~~ 508 (715)
T PRK11730 491 VN---DCPGFFVNRVLFPYFA 508 (715)
T ss_pred ec---CcCchhHHHHHHHHHH
Confidence 52 6777777766666443
No 473
>PRK13748 putative mercuric reductase; Provisional
Probab=46.29 E-value=22 Score=39.06 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=28.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.+-.++|+|||+||+..|..+.+. | +++.++|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 356899999999999999988763 5 578899975
No 474
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.10 E-value=21 Score=38.63 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcc---
Q 010154 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--- 395 (516)
Q Consensus 319 l~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~--- 395 (516)
..++.-....|...|+.|+|-..-.+++++.|.+ .|+.... ... ........+.-+.+..
T Consensus 291 ~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-----~~~-------~~~~~~~~~~~~~~l~~~~ 353 (435)
T cd01974 291 VDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-----VLT-------GNGGKRFEKEMQALLDASP 353 (435)
T ss_pred HHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE-----EEe-------CCCCHHHHHHHHHHHhhcC
Confidence 3444444457788999999988899999999874 3773211 111 1111111111111111
Q ss_pred --------ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010154 396 --------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (516)
Q Consensus 396 --------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (516)
...+...+.+.++..+||++||-|.. +.+++...-|.| ..+.|.
T Consensus 354 ~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 354 YGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 11222457888899999999997741 333333346754 456665
No 475
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=46.04 E-value=1.3e+02 Score=31.85 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=68.3
Q ss_pred HHHHHcCCCceec---cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCe
Q 010154 292 LLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (516)
Q Consensus 292 iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (516)
.+.+| .++||+| |..|=| =+|+=++.-.+...+++++.||+++|-+. + .+++-++.++.+ .|+ +
T Consensus 116 ~~a~~-s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~~g~l~g~kia~vGD~~-~-~v~~Sl~~~~~~-~g~-------~ 182 (332)
T PRK04284 116 TLAEY-SGVPVWNGLTDEDHPT--QVLADFLTAKEHLKKPYKDIKFTYVGDGR-N-NVANALMQGAAI-MGM-------D 182 (332)
T ss_pred HHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhcCCcCCcEEEEecCCC-c-chHHHHHHHHHH-cCC-------E
Confidence 33444 4799999 333333 45666666655523479999999999873 2 477777776665 475 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEEEEcc
Q 010154 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILIGSS 419 (516)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~---~~~~L~eav~~vkptvLIG~S 419 (516)
+.++=.+|+.-.+ +.++.. +.+++. .. ...++.|++++ +||+.-.+
T Consensus 183 v~~~~P~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 183 FHLVCPKELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred EEEECCccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 7888777763321 112111 233332 11 23689999997 99998764
No 476
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=46.02 E-value=1.3e+02 Score=32.04 Aligned_cols=138 Identities=12% Similarity=0.156 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhCCCeeeEeeeCCCchHHHHHHHHcCCCceeccC-CcchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 010154 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (516)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Al~~~g-~~L~d~riv~~GA 339 (516)
+.+.+..+.. | .++++ +-.. .+.+.+.+.+| .++||.|-. -..=-.=+||=++.-.+..| +++++.+|+++|-
T Consensus 90 l~Dtarvls~-y-~D~iv-iR~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLGR-M-YDGIQ-YRGH-GQEVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHHH-h-CCEEE-EECC-chHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 4444544444 4 33332 3333 23344444555 479999931 11223345677777767766 4699999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc-cCC---CCCHHHHhcccCCcEE
Q 010154 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTIL 415 (516)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~-~~~---~~~L~eav~~vkptvL 415 (516)
+.- .+++-++.++.+ .|+ ++.++-.+|+.-.. + .-+.-+.+++. ... ..++.||+++ +||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 742 367777666655 474 68888887763221 1 11111233332 111 2689999998 9999
Q ss_pred EEcc
Q 010154 416 IGSS 419 (516)
Q Consensus 416 IG~S 419 (516)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9865
No 477
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=45.92 E-value=23 Score=38.92 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 010154 330 AEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
.+.+|+|+|||.+|+..|..|.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988865
No 478
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=45.80 E-value=22 Score=36.91 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010154 333 RFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (516)
+|+|+|||.+|+..|-.|.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 68999999999999988754
No 479
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=45.75 E-value=54 Score=30.90 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 317 gll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
..+.++...+.-..++++++.|+|+.|..++++... .| .+++.++++
T Consensus 121 ~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 121 TAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 334455555554578899999999866666654432 34 357777664
No 480
>PRK09186 flagellin modification protein A; Provisional
Probab=45.75 E-value=21 Score=34.04 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 329 L~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
+++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 45789999998 4455556666643 353 56767653
No 481
>PRK06545 prephenate dehydrogenase; Validated
Probab=45.60 E-value=58 Score=34.30 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010154 332 HRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (516)
.||.|+|+|..|.++|..+...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998653
No 482
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=45.50 E-value=30 Score=30.89 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=51.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCc-cCCchhc---hhhccccCCCCCHHHHhcc
Q 010154 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-DSLQHFK---KPWAHEHEPVNNLLDAVKV 409 (516)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~-~~l~~~k---~~~A~~~~~~~~L~eav~~ 409 (516)
|+|+|||+.|.-+|-.|.++ | .++.++++... .+... +.+.-.. ....+......+..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSPR-LEAIKEQGLTITGPDGDETVQPPIVISAPSADA-- 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHHH-HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH--
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEcccc-HHhhhheeEEEEecccceecccccccCcchhcc--
Confidence 78999999999999888663 4 46888888651 11110 0110000 00000000111121223
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 010154 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNPT 449 (516)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNPt 449 (516)
-++|++| ++... .=++++++.++.+...- .|+.+-|=.
T Consensus 66 ~~~D~vi-v~vKa-~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 66 GPYDLVI-VAVKA-YQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp STESEEE-E-SSG-GGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred CCCcEEE-EEecc-cchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 3588888 44433 34677888887654442 445566643
No 483
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=45.46 E-value=1.6e+02 Score=31.72 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCcchHHHHHHHH--HHHHHHhCCCcccceEEEeCcchHHHH-HHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCC
Q 010154 306 DIQGTASVVLAGV--VAALKLIGGTLAEHRFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 382 (516)
Q Consensus 306 DiQGTaaV~LAgl--l~Al~~~g~~L~d~riv~~GAGsAg~G-IA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R 382 (516)
|...-|-+..||+ ++|+|..+.+ ..++++|+|+| |+| +|=|++.+| | -+++.+|+.
T Consensus 141 d~~~aApllCaGiT~y~alk~~~~~-pG~~V~I~G~G--GlGh~avQ~Aka~----g-------a~Via~~~~------- 199 (339)
T COG1064 141 DLAEAAPLLCAGITTYRALKKANVK-PGKWVAVVGAG--GLGHMAVQYAKAM----G-------AEVIAITRS------- 199 (339)
T ss_pred ChhhhhhhhcCeeeEeeehhhcCCC-CCCEEEEECCc--HHHHHHHHHHHHc----C-------CeEEEEeCC-------
Confidence 3344444444554 5677773322 37899999999 666 455555553 4 367877762
Q ss_pred ccCCchhchhhcccc-------CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC
Q 010154 383 KDSLQHFKKPWAHEH-------EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT 455 (516)
Q Consensus 383 ~~~l~~~k~~~A~~~-------~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ect 455 (516)
+.|+++|++. ....+..++++. +.|+.|=+.+ +-.| +..++.+. ..=.+.-..||...+..+
T Consensus 200 -----~~K~e~a~~lGAd~~i~~~~~~~~~~~~~-~~d~ii~tv~-~~~~-~~~l~~l~---~~G~~v~vG~~~~~~~~~ 268 (339)
T COG1064 200 -----EEKLELAKKLGADHVINSSDSDALEAVKE-IADAIIDTVG-PATL-EPSLKALR---RGGTLVLVGLPGGGPIPL 268 (339)
T ss_pred -----hHHHHHHHHhCCcEEEEcCCchhhHHhHh-hCcEEEECCC-hhhH-HHHHHHHh---cCCEEEEECCCCCcccCC
Confidence 2344455431 012345555555 3999997777 4222 33444444 555666678885223332
Q ss_pred H-HHHhcccCCcEEEec
Q 010154 456 A-EEAYTWSKGRAIFAS 471 (516)
Q Consensus 456 p-e~A~~wt~G~aifAs 471 (516)
. ...+-| +++.|..|
T Consensus 269 ~~~~~li~-~~~~i~GS 284 (339)
T COG1064 269 LPAFLLIL-KEISIVGS 284 (339)
T ss_pred CCHHHhhh-cCeEEEEE
Confidence 2 222322 56777654
No 484
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=45.36 E-value=39 Score=36.33 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred eEEEeCcchHHHH-HHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010154 333 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (516)
Q Consensus 333 riv~~GAGsAg~G-IA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav~~vk 411 (516)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|....-.+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5889999999998 9998865 363 57778864210 1011211100110 01 11 12344 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEecCCCCCceeeCCEEe
Q 010154 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGKVF 485 (516)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt-~G~aifAsGSPf~pv~~~Grt~ 485 (516)
+|.+|=-++.+ --.+++.++... .-||+ +.+|. +++.. +.+.|--||| +|||-
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~~--~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTT 112 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKER--GIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTT 112 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHHc--CCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHH
Confidence 88888655655 456778777653 56775 22333 22222 3467778887 77654
No 485
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=45.18 E-value=1.2e+02 Score=33.77 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=63.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHH-
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLL- 404 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~--~~~~~L~- 404 (516)
.+.++||+++|-|-.|+++|+.|.+. | -++.+.|.+=.- .....++...+. -..+...
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~~~~-------~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDRPAP-------EGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCCCCc-------cchhhhhhhccCceeecCccch
Confidence 34589999999999999999998763 5 367788864111 111112111111 0111111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEecCCCCCceeeCCE
Q 010154 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGK 483 (516)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt-~G~aifAsGSPf~pv~~~Gr 483 (516)
+-.+ .+|++|=--+.+ .-++.+.++-+. .-||| +.-|-++... ....|-.||| |||
T Consensus 65 ~~~~--~~d~vV~SPGi~-~~~p~v~~A~~~--gi~i~-----------~dieL~~r~~~~~p~vaITGT-------NGK 121 (448)
T COG0771 65 EDLA--EFDLVVKSPGIP-PTHPLVEAAKAA--GIEII-----------GDIELFYRLSGEAPIVAITGT-------NGK 121 (448)
T ss_pred hccc--cCCEEEECCCCC-CCCHHHHHHHHc--CCcEE-----------eHHHHHHHhcCCCCEEEEECC-------Cch
Confidence 2233 378888444554 345655555553 34444 2334444433 3456667887 888
Q ss_pred Ee
Q 010154 484 VF 485 (516)
Q Consensus 484 t~ 485 (516)
|-
T Consensus 122 TT 123 (448)
T COG0771 122 TT 123 (448)
T ss_pred HH
Confidence 64
No 486
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.09 E-value=57 Score=33.95 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCC--CcEEEEcCCCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMASFNE--KPLILALSNPT 449 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~e--rPIIFaLSNPt 449 (516)
+-|++||+|..| =|+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASG--RTPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 469999999977 48888888753333 35544334555
No 487
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.06 E-value=80 Score=33.94 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=63.2
Q ss_pred ccc-ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 010154 329 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (516)
Q Consensus 329 L~d-~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~~~~~~~L~eav 407 (516)
++. +||.|+|.|-.|++.+++|... .| .-++...|.+=. ....+.|.. ...+.... -+ .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WN-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CC-hHHh
Confidence 444 6899999999999999998753 22 125677886421 000011211 11111100 01 2234
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCceeeCCEEe
Q 010154 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (516)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Grt~ 485 (516)
+. +|.+|=-++.+ .-.+++.++... .-||+ +.+|. ++++.+.+.|--||| ||||-
T Consensus 67 ~~--~d~vV~SpgI~-~~~p~~~~a~~~--gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 LE--ADLVVTNPGIA-LATPEIQQVLAA--GIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred cc--CCEEEECCCCC-CCCHHHHHHHHC--CCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 43 78777555554 346777776553 46774 22333 233345678888997 77753
No 488
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=45.03 E-value=20 Score=41.58 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010154 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (516)
Q Consensus 328 ~L~d~riv~~GAGsAg~GIA~ll~~~ 353 (516)
.-+..+|+|+|||.||+..|-.|.+.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc
Confidence 35668999999999999999888763
No 489
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=44.98 E-value=24 Score=37.32 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
.|+|+|||.||+.+|..|.++ |. .+-++|+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcC
Confidence 489999999999999998764 64 35667653
No 490
>PRK08219 short chain dehydrogenase; Provisional
Probab=44.86 E-value=79 Score=29.40 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=39.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchh-----hcc-ccCCCCCHH
Q 010154 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH-EHEPVNNLL 404 (516)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~-----~A~-~~~~~~~L~ 404 (516)
.+++|.|| |..|..+++.|++. .+++++|++. +.++...+. +-+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57899897 56666666666431 3577777641 111111111 111 111224566
Q ss_pred HHhccc-CCcEEEEccCCC
Q 010154 405 DAVKVI-KPTILIGSSGVG 422 (516)
Q Consensus 405 eav~~v-kptvLIG~S~~~ 422 (516)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777654 689999887754
No 491
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=44.84 E-value=26 Score=38.45 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 329 L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5789999999999999999888653 26788776654
No 492
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.78 E-value=30 Score=38.62 Aligned_cols=80 Identities=10% Similarity=0.262 Sum_probs=47.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCC
Q 010154 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNN 402 (516)
Q Consensus 326 g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~~A~~---~~~~~~ 402 (516)
...|...|++|+|-++-.+|+++.+.+.| |+. +..+++. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~EL----Gm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILAREM----GIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHhC----CCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 36788999999999999999999987653 873 2233321 010000011111111110 112235
Q ss_pred HHHHhcccCCcEEEEcc
Q 010154 403 LLDAVKVIKPTILIGSS 419 (516)
Q Consensus 403 L~eav~~vkptvLIG~S 419 (516)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 77888999999999966
No 493
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.66 E-value=28 Score=37.70 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
-.++|+|+|+||+..|..+.+. | +++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4689999999999999887653 5 578899964
No 494
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=44.48 E-value=1.9e+02 Score=29.79 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 321 Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
++.....--.+++++|.|+|+.|...+.+. .+ .|. +.+..+++
T Consensus 174 al~~~~~~~~g~~vlI~g~g~vG~~a~~~a-~~----~G~------~~v~~~~~ 216 (365)
T cd05279 174 AAVNTAKVTPGSTCAVFGLGGVGLSVIMGC-KA----AGA------SRIIAVDI 216 (365)
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEeC
Confidence 333333334578999999988877765553 22 364 35666664
No 495
>PLN02576 protoporphyrinogen oxidase
Probab=44.29 E-value=14 Score=39.60 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=24.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccC
Q 010154 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (516)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (516)
+.+|+|+|||-||+..|..|.++. -.-++.=||+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~--g~~v~vlEa~~ 46 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKH--GVNVLVTEARD 46 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhc--CCCEEEEecCC
Confidence 357999999999999998887641 01245555554
No 496
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=44.27 E-value=68 Score=32.46 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCC
Q 010154 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (516)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~ 375 (516)
|+|.|..|.++|+.+... | .+++++|+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G-------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G-------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C-------CeEEEEeCC
Confidence 689999999999998753 4 357777764
No 497
>PTZ00367 squalene epoxidase; Provisional
Probab=44.23 E-value=58 Score=36.91 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHhCCCc---ccceEEEeCcchHHHHHHHHHHH
Q 010154 323 KLIGGTL---AEHRFLFLGAGEAGTGIAELIAL 352 (516)
Q Consensus 323 ~~~g~~L---~d~riv~~GAGsAg~GIA~ll~~ 352 (516)
++..++. .+-+|+|+|||.||+..|..|.+
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh
Confidence 4445554 45689999999999999988865
No 498
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=44.05 E-value=56 Score=33.30 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcC
Q 010154 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (516)
Q Consensus 315 LAgll~Al~~~g~~L~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs 374 (516)
.+..+.|+...+..-..++++|.|+|+.|..++.+.. + .|. ++++.+++
T Consensus 162 ~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak-~----~G~------~~v~~~~~ 210 (361)
T cd08231 162 LATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAK-L----AGA------RRVIVIDG 210 (361)
T ss_pred HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcC
Confidence 3444556666665557899999999877777665443 2 364 46777765
No 499
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.03 E-value=30 Score=39.24 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhcccCeEEEEcCCC
Q 010154 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (516)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvDs~G 376 (516)
...||+|+|+|.||+..|..+.+. |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888763 53 466777653
No 500
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.95 E-value=51 Score=34.27 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCC
Q 010154 411 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPT 449 (516)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt 449 (516)
+-|++||.|..| =|+++++++.. ...-|+|.=-+||.
T Consensus 131 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~tI~IT~~~~ 169 (299)
T PRK05441 131 AKDVVVGIAASG--RTPYVIGALEYARERGALTIGISCNPG 169 (299)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 579999999876 58999998853 33346666555666
Done!