Query 010156
Match_columns 516
No_of_seqs 615 out of 3479
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 2.2E-50 4.8E-55 412.1 37.2 341 75-419 12-356 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 1.8E-43 3.9E-48 331.5 25.0 252 166-419 40-298 (300)
3 CHL00175 minD septum-site dete 100.0 7.5E-32 1.6E-36 268.4 23.1 237 168-415 10-255 (281)
4 PRK13232 nifH nitrogenase redu 100.0 5.5E-32 1.2E-36 268.1 21.8 232 173-415 1-247 (273)
5 TIGR01969 minD_arch cell divis 100.0 8E-32 1.7E-36 263.6 22.7 227 174-416 1-234 (251)
6 PRK13235 nifH nitrogenase redu 100.0 7.6E-31 1.6E-35 260.1 22.4 234 173-415 1-249 (274)
7 PRK13236 nitrogenase reductase 100.0 7.5E-31 1.6E-35 262.2 21.4 241 172-426 5-261 (296)
8 COG2894 MinD Septum formation 100.0 2.3E-31 4.9E-36 241.4 14.9 232 172-415 1-248 (272)
9 PRK13233 nifH nitrogenase redu 100.0 7.3E-31 1.6E-35 260.5 19.9 229 172-415 1-250 (275)
10 TIGR03371 cellulose_yhjQ cellu 100.0 4.1E-31 9E-36 257.9 17.6 234 173-416 1-245 (246)
11 PRK10818 cell division inhibit 100.0 4.3E-30 9.3E-35 254.3 21.4 231 172-414 1-248 (270)
12 COG0455 flhG Antiactivator of 100.0 4.5E-30 9.8E-35 249.1 20.9 232 172-416 1-242 (262)
13 CHL00072 chlL photochlorophyll 100.0 1.3E-29 2.8E-34 252.0 23.7 224 176-416 3-247 (290)
14 TIGR01968 minD_bact septum sit 100.0 5.7E-30 1.2E-34 251.9 20.7 229 173-414 1-238 (261)
15 cd02040 NifH NifH gene encodes 100.0 6.6E-30 1.4E-34 253.0 21.0 234 173-418 1-251 (270)
16 PRK13230 nitrogenase reductase 100.0 9.4E-30 2E-34 252.9 21.8 232 173-415 1-248 (279)
17 PRK13234 nifH nitrogenase redu 100.0 4.4E-30 9.5E-35 256.5 19.0 232 172-416 3-252 (295)
18 PRK13185 chlL protochlorophyll 100.0 1.7E-29 3.8E-34 249.9 21.2 229 172-417 1-250 (270)
19 COG0489 Mrp ATPases involved i 100.0 2.6E-29 5.7E-34 245.8 20.0 205 170-384 54-263 (265)
20 PRK13869 plasmid-partitioning 100.0 7.7E-30 1.7E-34 264.6 16.2 239 171-419 119-394 (405)
21 PRK13231 nitrogenase reductase 100.0 3.6E-29 7.9E-34 246.8 19.4 234 172-416 1-242 (264)
22 TIGR01287 nifH nitrogenase iro 100.0 6.9E-29 1.5E-33 246.3 21.3 230 174-416 1-248 (275)
23 PRK10037 cell division protein 100.0 2.5E-29 5.5E-34 245.8 17.1 228 173-420 1-243 (250)
24 TIGR01281 DPOR_bchL light-inde 100.0 5.8E-29 1.3E-33 246.0 19.4 226 175-417 2-248 (268)
25 cd02032 Bchl_like This family 100.0 2.4E-28 5.2E-33 241.4 20.8 224 175-415 2-246 (267)
26 cd02037 MRP-like MRP (Multiple 100.0 7.7E-28 1.7E-32 221.3 19.1 167 175-380 1-169 (169)
27 TIGR03453 partition_RepA plasm 100.0 5.1E-28 1.1E-32 251.0 18.6 239 171-419 102-377 (387)
28 PHA02518 ParA-like protein; Pr 100.0 8.8E-28 1.9E-32 228.8 18.1 204 174-417 1-210 (211)
29 COG1192 Soj ATPases involved i 100.0 3.7E-28 7.9E-33 239.0 15.9 238 172-419 1-257 (259)
30 PF06564 YhjQ: YhjQ protein; 100.0 6.2E-28 1.3E-32 229.6 16.7 229 173-418 1-241 (243)
31 PRK13705 plasmid-partitioning 99.9 2.7E-27 5.9E-32 244.0 17.4 237 171-416 104-380 (388)
32 cd02036 MinD Bacterial cell di 99.9 1.5E-26 3.1E-31 214.4 17.9 179 175-405 1-179 (179)
33 PHA02519 plasmid partition pro 99.9 7.4E-27 1.6E-31 240.3 17.3 235 171-414 104-378 (387)
34 TIGR03815 CpaE_hom_Actino heli 99.9 2.8E-26 6.1E-31 232.6 21.1 219 170-410 90-320 (322)
35 cd02117 NifH_like This family 99.9 3E-26 6.5E-31 218.5 18.9 193 174-379 1-212 (212)
36 cd02033 BchX Chlorophyllide re 99.9 2.7E-25 5.7E-30 222.5 23.6 227 170-417 28-277 (329)
37 TIGR02016 BchX chlorophyllide 99.9 1.8E-25 4E-30 222.8 21.2 229 174-418 1-254 (296)
38 PF06155 DUF971: Protein of un 99.9 4.7E-26 1E-30 185.5 7.3 87 426-513 2-89 (89)
39 COG1149 MinD superfamily P-loo 99.9 2.8E-24 6E-29 202.7 20.2 225 173-414 1-282 (284)
40 TIGR01007 eps_fam capsular exo 99.9 4.5E-24 9.7E-29 202.4 16.0 170 173-348 17-194 (204)
41 COG3640 CooC CO dehydrogenase 99.9 3.1E-23 6.8E-28 191.6 20.1 219 175-414 2-252 (255)
42 TIGR03018 pepcterm_TyrKin exop 99.9 7.3E-24 1.6E-28 201.2 16.0 164 171-342 33-207 (207)
43 cd03110 Fer4_NifH_child This p 99.9 9.2E-24 2E-28 196.0 16.2 179 175-377 1-179 (179)
44 TIGR03029 EpsG chain length de 99.9 2.1E-23 4.5E-28 207.0 16.5 166 172-343 102-274 (274)
45 PRK13849 putative crown gall t 99.9 1.7E-23 3.8E-28 201.0 15.3 205 173-412 1-215 (231)
46 COG1348 NifH Nitrogenase subun 99.9 2.9E-22 6.2E-27 183.8 18.5 233 173-416 1-250 (278)
47 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 1.8E-22 3.9E-27 191.4 15.1 231 174-416 1-249 (273)
48 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 3.6E-22 7.9E-27 187.4 9.7 191 176-384 1-195 (195)
49 TIGR01005 eps_transp_fam exopo 99.9 1.4E-21 3E-26 219.9 14.8 172 171-348 544-722 (754)
50 PRK09841 cryptic autophosphory 99.8 2.4E-20 5.1E-25 207.8 17.4 170 171-346 529-705 (726)
51 PRK11519 tyrosine kinase; Prov 99.8 2.2E-20 4.8E-25 207.8 16.9 168 172-345 525-699 (719)
52 cd00550 ArsA_ATPase Oxyanion-t 99.8 8.1E-21 1.8E-25 185.7 8.4 203 176-380 2-240 (254)
53 cd03111 CpaE_like This protein 99.8 1.4E-19 2.9E-24 152.9 12.9 102 175-343 1-106 (106)
54 cd02038 FleN-like FleN is a me 99.8 1.4E-19 3.1E-24 160.7 13.3 108 175-346 1-109 (139)
55 COG4963 CpaE Flp pilus assembl 99.8 1.2E-18 2.6E-23 172.9 18.8 231 170-416 101-345 (366)
56 cd02035 ArsA ArsA ATPase funct 99.8 3.5E-19 7.6E-24 170.3 8.5 166 176-347 1-183 (217)
57 PF07015 VirC1: VirC1 protein; 99.8 6E-18 1.3E-22 158.8 15.3 182 173-390 1-190 (231)
58 cd02042 ParA ParA and ParB of 99.8 8.5E-18 1.8E-22 141.5 12.6 99 175-342 1-104 (104)
59 PF09140 MipZ: ATPase MipZ; I 99.8 1.8E-19 4E-24 169.3 2.2 209 174-396 1-232 (261)
60 COG2151 PaaD Predicted metal-s 99.7 6.3E-18 1.4E-22 140.3 9.3 88 71-158 8-95 (111)
61 PF02374 ArsA_ATPase: Anion-tr 99.7 2E-17 4.3E-22 165.4 12.0 196 173-378 1-285 (305)
62 TIGR02409 carnitine_bodg gamma 99.7 3.2E-18 6.9E-23 176.3 6.3 80 436-516 2-82 (366)
63 COG3536 Uncharacterized protei 99.7 2.7E-17 5.9E-22 131.6 7.2 89 423-514 4-93 (120)
64 PF13614 AAA_31: AAA domain; P 99.7 3E-17 6.5E-22 148.7 6.8 141 174-320 1-156 (157)
65 COG0003 ArsA Predicted ATPase 99.6 2.7E-15 5.8E-20 149.6 14.7 196 173-379 2-285 (322)
66 TIGR02410 carnitine_TMLD trime 99.6 1.3E-16 2.9E-21 163.7 4.4 67 449-516 2-71 (362)
67 COG0541 Ffh Signal recognition 99.6 1.3E-15 2.9E-20 153.2 8.2 244 73-375 20-272 (451)
68 PRK10867 signal recognition pa 99.6 3.6E-15 7.8E-20 154.7 11.2 244 73-375 20-273 (433)
69 TIGR00959 ffh signal recogniti 99.6 1.1E-14 2.4E-19 151.0 10.5 244 73-375 19-272 (428)
70 KOG3888 Gamma-butyrobetaine,2- 99.5 1.9E-15 4E-20 146.5 3.3 82 433-515 25-107 (407)
71 TIGR01425 SRP54_euk signal rec 99.5 2.6E-14 5.7E-19 147.3 9.7 244 73-375 20-272 (429)
72 TIGR00064 ftsY signal recognit 99.5 4.3E-13 9.3E-18 132.1 15.7 168 172-375 71-250 (272)
73 PF01883 DUF59: Domain of unkn 99.5 1.8E-13 3.9E-18 107.0 8.4 72 77-150 1-72 (72)
74 PRK00771 signal recognition pa 99.5 1.5E-13 3.3E-18 142.9 10.4 241 73-375 16-265 (437)
75 cd03114 ArgK-like The function 99.5 1.5E-12 3.2E-17 116.7 15.0 143 176-344 2-147 (148)
76 TIGR03406 FeS_long_SufT probab 99.5 7.1E-13 1.5E-17 120.3 12.3 111 48-158 43-159 (174)
77 PF10609 ParA: ParA/MinD ATPas 99.4 3E-13 6.4E-18 105.8 7.8 77 282-358 2-80 (81)
78 KOG3889 Predicted gamma-butyro 99.4 1.2E-13 2.6E-18 129.1 4.0 68 446-514 17-84 (371)
79 cd03115 SRP The signal recogni 99.4 1.3E-11 2.8E-16 113.7 15.5 164 175-374 2-171 (173)
80 PRK10416 signal recognition pa 99.3 4.6E-11 9.9E-16 120.1 17.6 167 173-375 114-292 (318)
81 KOG2825 Putative arsenite-tran 99.3 5E-12 1.1E-16 117.9 8.9 178 169-348 14-267 (323)
82 cd02034 CooC The accessory pro 99.3 8.9E-12 1.9E-16 106.6 8.9 111 176-311 2-115 (116)
83 PRK13886 conjugal transfer pro 99.3 3.9E-11 8.6E-16 114.7 14.1 48 172-219 1-48 (241)
84 cd01983 Fer4_NifH The Fer4_Nif 99.3 4.3E-11 9.4E-16 98.4 11.5 94 176-342 2-99 (99)
85 TIGR00347 bioD dethiobiotin sy 99.2 1.6E-10 3.4E-15 105.8 12.9 154 178-342 2-166 (166)
86 PRK11889 flhF flagellar biosyn 99.2 2.5E-10 5.5E-15 115.4 15.1 164 173-375 241-410 (436)
87 PRK13768 GTPase; Provisional 99.2 1.5E-10 3.2E-15 113.3 11.8 45 172-217 1-45 (253)
88 PRK00090 bioD dithiobiotin syn 99.2 1.7E-10 3.7E-15 110.8 11.6 193 176-378 2-201 (222)
89 TIGR02945 SUF_assoc FeS assemb 99.2 2.3E-10 4.9E-15 95.2 10.0 81 77-158 3-83 (99)
90 PRK12726 flagellar biosynthesi 99.1 1.7E-09 3.7E-14 109.1 14.8 164 173-375 206-375 (407)
91 PRK14974 cell division protein 99.1 2.2E-09 4.8E-14 108.3 14.3 246 75-375 58-312 (336)
92 TIGR02159 PA_CoA_Oxy4 phenylac 99.1 6.2E-10 1.3E-14 98.3 8.6 69 87-158 1-70 (146)
93 PRK12724 flagellar biosynthesi 99.0 2.6E-09 5.6E-14 109.6 13.9 159 174-375 224-392 (432)
94 PRK01077 cobyrinic acid a,c-di 99.0 4.7E-09 1E-13 111.2 16.0 202 173-415 3-216 (451)
95 TIGR00345 arsA arsenite-activa 99.0 1.9E-09 4.1E-14 107.3 12.1 74 306-379 190-267 (284)
96 cd03109 DTBS Dethiobiotin synt 99.0 1.4E-08 3E-13 89.5 15.1 125 178-377 4-134 (134)
97 PRK12727 flagellar biosynthesi 99.0 6.8E-09 1.5E-13 109.0 13.8 161 172-375 349-517 (559)
98 PRK05703 flhF flagellar biosyn 99.0 3E-09 6.5E-14 111.3 11.2 161 173-375 221-390 (424)
99 PF00448 SRP54: SRP54-type pro 99.0 7.6E-09 1.7E-13 97.0 12.8 166 173-374 1-172 (196)
100 TIGR00750 lao LAO/AO transport 98.9 6.4E-08 1.4E-12 97.2 15.8 151 172-346 33-184 (300)
101 PRK14493 putative bifunctional 98.8 3.6E-08 7.9E-13 97.0 12.8 136 173-332 1-137 (274)
102 PRK12723 flagellar biosynthesi 98.8 7E-08 1.5E-12 99.3 15.2 161 173-375 174-345 (388)
103 PRK12374 putative dithiobiotin 98.8 1.4E-07 3E-12 91.1 16.1 189 172-380 1-204 (231)
104 KOG0780 Signal recognition par 98.8 7.3E-09 1.6E-13 102.6 6.3 226 74-350 22-256 (483)
105 PF13500 AAA_26: AAA domain; P 98.8 4E-08 8.7E-13 92.6 10.4 188 174-383 1-196 (199)
106 COG0552 FtsY Signal recognitio 98.8 2E-08 4.4E-13 98.9 8.4 168 172-375 138-317 (340)
107 PRK05632 phosphate acetyltrans 98.7 2.5E-07 5.5E-12 102.9 17.1 178 172-383 1-200 (684)
108 PRK13505 formate--tetrahydrofo 98.7 3.7E-07 8.1E-12 95.8 16.2 89 318-413 357-457 (557)
109 TIGR00313 cobQ cobyric acid sy 98.7 2.2E-07 4.7E-12 98.9 14.9 197 176-380 1-225 (475)
110 PRK14723 flhF flagellar biosyn 98.7 1.6E-07 3.5E-12 103.2 12.4 167 173-379 185-365 (767)
111 PRK06731 flhF flagellar biosyn 98.7 2.3E-07 5.1E-12 91.0 12.3 164 173-375 75-244 (270)
112 COG1703 ArgK Putative periplas 98.6 6.2E-07 1.3E-11 86.9 14.1 152 169-345 47-200 (323)
113 PRK09435 membrane ATPase/prote 98.6 6.9E-07 1.5E-11 90.1 14.8 152 171-347 54-207 (332)
114 COG0132 BioD Dethiobiotin synt 98.6 1.2E-06 2.6E-11 82.9 15.5 200 172-382 1-207 (223)
115 PRK14722 flhF flagellar biosyn 98.6 7.6E-07 1.7E-11 91.0 14.4 163 173-375 137-314 (374)
116 PRK00784 cobyric acid synthase 98.6 1.9E-06 4.1E-11 92.3 18.0 200 172-381 1-229 (488)
117 TIGR00379 cobB cobyrinic acid 98.5 2E-06 4.3E-11 91.1 15.7 197 176-414 2-212 (449)
118 PRK06995 flhF flagellar biosyn 98.5 1.1E-06 2.4E-11 92.5 12.8 161 173-375 256-424 (484)
119 TIGR03499 FlhF flagellar biosy 98.5 1.3E-07 2.7E-12 94.1 5.4 42 173-215 194-237 (282)
120 COG1797 CobB Cobyrinic acid a, 98.5 2.9E-06 6.3E-11 86.4 14.8 168 175-383 2-183 (451)
121 PF03308 ArgK: ArgK protein; 98.4 1.9E-06 4E-11 82.6 9.3 149 172-345 28-178 (266)
122 COG1419 FlhF Flagellar GTP-bin 98.2 1.7E-05 3.6E-10 80.8 12.2 161 173-375 203-371 (407)
123 KOG0781 Signal recognition par 98.1 1E-05 2.3E-10 82.6 8.6 156 170-345 375-541 (587)
124 PRK06278 cobyrinic acid a,c-di 98.0 0.00017 3.6E-09 76.4 16.2 169 169-377 234-418 (476)
125 PRK13896 cobyrinic acid a,c-di 98.0 6.4E-05 1.4E-09 78.7 11.8 169 173-382 1-178 (433)
126 PRK14721 flhF flagellar biosyn 97.7 0.00052 1.1E-08 71.5 14.3 160 173-375 191-359 (420)
127 cd04170 EF-G_bact Elongation f 97.7 0.00037 7.9E-09 68.9 11.2 97 277-380 60-157 (268)
128 KOG1532 GTPase XAB1, interacts 97.7 0.0014 3.1E-08 63.0 14.4 159 173-347 19-194 (366)
129 cd04168 TetM_like Tet(M)-like 97.6 0.0012 2.5E-08 64.1 13.4 93 278-377 61-154 (237)
130 cd01886 EF-G Elongation factor 97.5 0.0061 1.3E-07 60.2 17.2 96 278-380 61-157 (270)
131 cd00477 FTHFS Formyltetrahydro 97.5 0.00019 4E-09 74.9 6.6 51 172-225 37-90 (524)
132 PF03029 ATP_bind_1: Conserved 97.4 5E-05 1.1E-09 73.5 1.5 39 181-219 3-41 (238)
133 COG1763 MobB Molybdopterin-gua 97.4 0.0012 2.6E-08 59.5 10.2 42 172-214 1-42 (161)
134 cd04169 RF3 RF3 subfamily. Pe 97.4 0.0021 4.5E-08 63.4 12.7 95 278-379 68-163 (267)
135 COG1341 Predicted GTPase or GT 97.4 0.00058 1.2E-08 69.5 8.6 42 175-217 75-116 (398)
136 PRK13506 formate--tetrahydrofo 97.4 0.0003 6.6E-09 74.0 6.5 50 172-224 53-105 (578)
137 TIGR00176 mobB molybdopterin-g 97.3 0.00068 1.5E-08 61.1 7.6 39 175-214 1-39 (155)
138 COG0529 CysC Adenylylsulfate k 97.3 0.00022 4.9E-09 64.2 4.3 52 171-223 21-72 (197)
139 PRK14494 putative molybdopteri 97.3 0.00087 1.9E-08 64.2 8.0 38 173-211 1-38 (229)
140 KOG1533 Predicted GTPase [Gene 97.2 0.00058 1.3E-08 64.1 5.7 41 181-221 9-49 (290)
141 cd04167 Snu114p Snu114p subfam 97.2 0.0024 5.2E-08 60.8 10.1 67 279-346 69-135 (213)
142 COG1492 CobQ Cobyric acid synt 97.1 0.0016 3.5E-08 67.9 8.5 198 175-382 3-230 (486)
143 PRK14495 putative molybdopteri 97.1 0.0026 5.7E-08 65.9 9.8 39 173-212 1-39 (452)
144 cd01884 EF_Tu EF-Tu subfamily. 97.1 0.0039 8.4E-08 58.5 10.2 68 279-346 63-130 (195)
145 PF03205 MobB: Molybdopterin g 97.1 0.0015 3.3E-08 57.7 6.7 42 174-216 1-43 (140)
146 cd00881 GTP_translation_factor 96.9 0.0063 1.4E-07 55.9 10.0 67 279-346 60-126 (189)
147 cd01120 RecA-like_NTPases RecA 96.9 0.0021 4.5E-08 57.5 6.6 38 178-215 3-40 (165)
148 PRK04296 thymidine kinase; Pro 96.8 0.01 2.2E-07 55.4 10.6 33 176-208 4-36 (190)
149 PRK00889 adenylylsulfate kinas 96.8 0.002 4.4E-08 59.1 5.8 41 173-214 4-44 (175)
150 PRK10751 molybdopterin-guanine 96.8 0.0079 1.7E-07 55.0 9.4 42 172-214 5-46 (173)
151 COG1618 Predicted nucleotide k 96.8 0.011 2.3E-07 52.8 9.7 39 171-210 3-41 (179)
152 COG0857 Pta BioD-like N-termin 96.8 0.0094 2E-07 60.7 10.5 38 172-209 1-38 (354)
153 cd04166 CysN_ATPS CysN_ATPS su 96.7 0.011 2.5E-07 55.9 10.4 69 279-347 75-143 (208)
154 PRK08233 hypothetical protein; 96.7 0.0042 9.2E-08 57.1 7.2 37 174-213 4-40 (182)
155 PF01583 APS_kinase: Adenylyls 96.7 0.0025 5.5E-08 57.2 5.4 42 174-216 3-44 (156)
156 cd04163 Era Era subfamily. Er 96.7 0.019 4.2E-07 51.0 11.3 67 279-346 49-123 (168)
157 PF00009 GTP_EFTU: Elongation 96.7 0.013 2.7E-07 54.5 10.2 67 279-346 68-134 (188)
158 PRK07667 uridine kinase; Provi 96.7 0.0033 7.1E-08 58.9 6.2 39 174-213 18-56 (193)
159 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0072 1.6E-07 54.5 8.0 35 175-210 4-38 (159)
160 PRK12740 elongation factor G; 96.6 0.012 2.5E-07 66.0 11.1 94 278-378 57-151 (668)
161 TIGR02012 tigrfam_recA protein 96.6 0.0037 8E-08 62.9 6.3 38 174-212 56-93 (321)
162 PRK00089 era GTPase Era; Revie 96.6 0.024 5.2E-07 56.6 12.2 68 279-347 51-126 (292)
163 TIGR00490 aEF-2 translation el 96.6 0.006 1.3E-07 68.7 8.6 68 278-346 83-150 (720)
164 cd01394 radB RadB. The archaea 96.6 0.0031 6.7E-08 60.1 5.5 39 175-213 20-58 (218)
165 PRK00741 prfC peptide chain re 96.6 0.031 6.6E-07 60.5 13.6 94 278-378 76-170 (526)
166 TIGR01618 phage_P_loop phage n 96.5 0.0075 1.6E-07 57.5 7.4 36 170-213 9-44 (220)
167 cd03116 MobB Molybdenum is an 96.5 0.0055 1.2E-07 55.4 6.1 41 173-214 1-41 (159)
168 cd01125 repA Hexameric Replica 96.5 0.0033 7.1E-08 61.0 4.9 40 175-214 2-53 (239)
169 PRK00007 elongation factor G; 96.4 0.034 7.4E-07 62.5 13.2 95 278-379 72-167 (693)
170 PRK03846 adenylylsulfate kinas 96.4 0.0052 1.1E-07 57.8 5.7 43 171-214 22-64 (198)
171 PRK00093 GTP-binding protein D 96.4 0.035 7.6E-07 58.8 12.7 67 279-346 47-121 (435)
172 cd01894 EngA1 EngA1 subfamily. 96.4 0.035 7.7E-07 49.1 10.8 67 279-346 43-117 (157)
173 TIGR00503 prfC peptide chain r 96.4 0.031 6.8E-07 60.5 12.1 94 278-378 77-171 (527)
174 PRK09361 radB DNA repair and r 96.4 0.0064 1.4E-07 58.3 6.1 37 174-211 24-60 (225)
175 cd03112 CobW_like The function 96.4 0.058 1.3E-06 48.7 12.0 35 177-213 3-37 (158)
176 PLN02974 adenosylmethionine-8- 96.4 0.18 3.9E-06 57.4 18.3 64 279-343 183-252 (817)
177 cd01887 IF2_eIF5B IF2/eIF5B (i 96.4 0.042 9.1E-07 49.4 11.2 67 279-346 48-114 (168)
178 PRK00652 lpxK tetraacyldisacch 96.4 0.017 3.7E-07 58.4 9.2 41 174-214 50-91 (325)
179 cd01891 TypA_BipA TypA (tyrosi 96.3 0.16 3.5E-06 47.3 15.2 67 279-346 63-129 (194)
180 PRK00049 elongation factor Tu; 96.3 0.03 6.4E-07 58.6 11.2 68 279-346 73-140 (396)
181 cd00983 recA RecA is a bacter 96.3 0.0078 1.7E-07 60.7 6.3 38 174-212 56-93 (325)
182 TIGR00708 cobA cob(I)alamin ad 96.3 0.016 3.4E-07 53.0 7.6 36 175-211 7-42 (173)
183 cd04165 GTPBP1_like GTPBP1-lik 96.3 0.059 1.3E-06 51.7 12.1 67 279-346 82-150 (224)
184 PRK07952 DNA replication prote 96.3 0.0057 1.2E-07 59.4 5.0 34 177-210 102-135 (244)
185 PRK06696 uridine kinase; Valid 96.3 0.0075 1.6E-07 57.8 5.8 40 174-214 23-62 (223)
186 PRK05973 replicative DNA helic 96.2 0.0064 1.4E-07 58.6 5.2 39 175-213 65-103 (237)
187 PF13479 AAA_24: AAA domain 96.2 0.016 3.4E-07 55.2 7.9 30 175-213 5-34 (213)
188 COG0050 TufB GTPases - transla 96.2 0.018 3.9E-07 56.0 8.0 70 279-348 73-142 (394)
189 COG1066 Sms Predicted ATP-depe 96.2 0.0058 1.3E-07 62.3 4.8 36 176-212 95-130 (456)
190 smart00382 AAA ATPases associa 96.2 0.0095 2.1E-07 51.2 5.6 40 174-214 3-42 (148)
191 cd01124 KaiC KaiC is a circadi 96.2 0.007 1.5E-07 55.9 5.0 38 177-214 2-39 (187)
192 TIGR02237 recomb_radB DNA repa 96.2 0.0099 2.2E-07 56.2 6.1 38 174-212 13-50 (209)
193 PRK12739 elongation factor G; 96.2 0.055 1.2E-06 60.8 12.9 95 278-379 70-165 (691)
194 cd01393 recA_like RecA is a b 96.1 0.013 2.7E-07 56.2 6.5 38 174-212 20-63 (226)
195 cd02028 UMPK_like Uridine mono 96.1 0.0081 1.8E-07 55.5 4.9 38 176-214 2-39 (179)
196 PRK15453 phosphoribulokinase; 96.0 0.013 2.9E-07 57.5 6.0 42 173-215 5-46 (290)
197 TIGR00682 lpxK tetraacyldisacc 96.0 0.032 6.9E-07 56.1 8.8 39 174-212 29-68 (311)
198 cd03113 CTGs CTP synthetase (C 96.0 0.15 3.2E-06 48.9 12.7 174 182-378 10-237 (255)
199 PHA02542 41 41 helicase; Provi 96.0 0.0095 2.1E-07 63.5 5.3 41 175-215 191-231 (473)
200 cd01121 Sms Sms (bacterial rad 96.0 0.011 2.5E-07 60.9 5.7 37 176-212 84-120 (372)
201 TIGR00484 EF-G translation elo 95.9 0.24 5.2E-06 55.8 16.6 95 278-379 72-167 (689)
202 COG3367 Uncharacterized conser 95.9 0.18 3.9E-06 50.0 13.5 167 173-380 148-328 (339)
203 PLN03127 Elongation factor Tu; 95.9 0.097 2.1E-06 55.6 12.7 68 279-346 122-189 (447)
204 PRK14489 putative bifunctional 95.9 0.022 4.8E-07 58.9 7.7 42 172-214 204-245 (366)
205 KOG1534 Putative transcription 95.9 0.01 2.2E-07 55.1 4.5 45 172-216 1-45 (273)
206 PRK05986 cob(I)alamin adenolsy 95.9 0.034 7.5E-07 51.5 8.0 36 175-211 24-59 (191)
207 cd01885 EF2 EF2 (for archaea a 95.9 0.07 1.5E-06 51.1 10.4 66 279-345 71-136 (222)
208 PRK06762 hypothetical protein; 95.9 0.011 2.4E-07 53.6 4.7 39 172-214 1-39 (166)
209 PF06155 DUF971: Protein of un 95.9 0.0058 1.3E-07 49.5 2.5 29 487-515 3-32 (89)
210 PRK10218 GTP-binding protein; 95.8 0.14 3E-06 56.3 13.8 69 278-347 65-133 (607)
211 TIGR01394 TypA_BipA GTP-bindin 95.8 0.048 1E-06 59.9 10.2 68 278-346 61-128 (594)
212 cd04171 SelB SelB subfamily. 95.8 0.044 9.5E-07 48.9 8.4 67 280-346 50-116 (164)
213 cd02029 PRK_like Phosphoribulo 95.8 0.014 3.1E-07 56.9 5.3 40 175-215 1-40 (277)
214 PF13207 AAA_17: AAA domain; P 95.8 0.011 2.3E-07 50.5 4.1 32 175-210 1-32 (121)
215 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.013 2.8E-07 56.4 5.1 39 174-213 20-64 (235)
216 cd04139 RalA_RalB RalA/RalB su 95.8 0.19 4.1E-06 44.7 12.5 67 279-346 46-117 (164)
217 PF13481 AAA_25: AAA domain; P 95.8 0.012 2.7E-07 54.7 4.7 39 176-214 34-82 (193)
218 PRK14491 putative bifunctional 95.7 0.043 9.4E-07 60.3 9.4 42 172-214 9-50 (597)
219 PRK13351 elongation factor G; 95.7 0.12 2.5E-06 58.2 13.1 95 278-379 70-165 (687)
220 KOG0635 Adenosine 5'-phosphosu 95.7 0.022 4.7E-07 50.0 5.5 50 167-217 25-74 (207)
221 PRK05480 uridine/cytidine kina 95.7 0.021 4.6E-07 54.0 6.0 39 173-214 6-44 (209)
222 cd04127 Rab27A Rab27a subfamil 95.7 0.36 7.7E-06 44.0 14.1 87 280-371 62-153 (180)
223 cd02027 APSK Adenosine 5'-phos 95.7 0.014 3E-07 52.2 4.4 37 178-214 3-39 (149)
224 PRK09354 recA recombinase A; P 95.7 0.024 5.1E-07 57.7 6.5 38 174-212 61-98 (349)
225 PF13245 AAA_19: Part of AAA d 95.7 0.022 4.7E-07 44.7 4.9 35 176-210 12-50 (76)
226 cd04125 RabA_like RabA-like su 95.6 0.6 1.3E-05 43.0 15.5 67 280-346 48-117 (188)
227 TIGR00436 era GTP-binding prot 95.6 0.17 3.8E-06 49.9 12.5 66 279-346 46-119 (270)
228 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.02 4.4E-07 56.2 5.4 38 175-212 37-74 (259)
229 cd04137 RheB Rheb (Ras Homolog 95.5 0.25 5.4E-06 45.1 12.4 67 280-347 48-119 (180)
230 cd01122 GP4d_helicase GP4d_hel 95.5 0.019 4.2E-07 56.6 5.2 37 176-212 32-69 (271)
231 TIGR02655 circ_KaiC circadian 95.5 0.023 5.1E-07 61.0 6.1 39 175-213 264-302 (484)
232 TIGR03574 selen_PSTK L-seryl-t 95.5 0.016 3.4E-07 56.6 4.4 36 178-213 3-38 (249)
233 cd04124 RabL2 RabL2 subfamily. 95.5 0.4 8.6E-06 43.0 13.3 67 279-346 47-116 (161)
234 cd01889 SelB_euk SelB subfamil 95.4 0.069 1.5E-06 49.6 8.4 67 279-346 66-132 (192)
235 PHA00729 NTP-binding motif con 95.4 0.025 5.5E-07 53.9 5.4 24 175-199 19-42 (226)
236 cd01883 EF1_alpha Eukaryotic e 95.4 0.039 8.5E-07 52.7 6.7 70 278-347 74-150 (219)
237 PF07755 DUF1611: Protein of u 95.4 0.12 2.6E-06 51.3 10.2 164 172-375 111-292 (301)
238 TIGR00485 EF-Tu translation el 95.4 0.14 3E-06 53.6 11.2 68 279-346 73-140 (394)
239 PRK05439 pantothenate kinase; 95.3 0.034 7.4E-07 55.8 6.2 42 172-214 85-128 (311)
240 TIGR00455 apsK adenylylsulfate 95.3 0.031 6.8E-07 51.7 5.6 43 171-214 16-58 (184)
241 smart00173 RAS Ras subfamily o 95.3 0.36 7.8E-06 43.1 12.5 67 280-347 47-118 (164)
242 PTZ00141 elongation factor 1- 95.3 0.037 8E-07 58.7 6.8 68 278-345 82-156 (446)
243 PRK12736 elongation factor Tu; 95.3 0.13 2.9E-06 53.7 10.8 68 279-346 73-140 (394)
244 cd00984 DnaB_C DnaB helicase C 95.3 0.026 5.7E-07 54.5 5.2 38 176-213 15-53 (242)
245 PRK01906 tetraacyldisaccharide 95.2 0.095 2.1E-06 53.3 9.2 41 174-214 57-98 (338)
246 TIGR03575 selen_PSTK_euk L-ser 95.2 0.021 4.5E-07 58.0 4.4 39 177-215 2-41 (340)
247 PLN03126 Elongation factor Tu; 95.2 0.12 2.6E-06 55.3 10.4 68 279-346 142-209 (478)
248 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.1 0.64 1.4E-05 42.3 13.8 66 280-346 49-119 (172)
249 PRK15494 era GTPase Era; Provi 95.1 0.24 5.1E-06 50.7 11.9 66 279-346 98-172 (339)
250 cd00880 Era_like Era (E. coli 95.1 0.14 3.1E-06 44.7 9.1 66 280-346 44-116 (163)
251 PF00485 PRK: Phosphoribulokin 95.1 0.028 6.1E-07 52.5 4.6 38 175-213 1-42 (194)
252 PRK05541 adenylylsulfate kinas 95.1 0.043 9.3E-07 50.4 5.7 39 173-212 7-45 (176)
253 COG1484 DnaC DNA replication p 95.1 0.032 7E-07 54.6 5.1 37 173-210 105-141 (254)
254 cd04122 Rab14 Rab14 subfamily. 95.0 0.9 2E-05 40.7 14.4 67 280-346 50-119 (166)
255 CHL00071 tufA elongation facto 95.0 0.22 4.8E-06 52.3 11.5 68 279-346 73-140 (409)
256 COG4088 Predicted nucleotide k 95.0 0.024 5.3E-07 52.6 3.6 37 178-214 5-41 (261)
257 PRK07414 cob(I)yrinic acid a,c 95.0 0.18 3.9E-06 46.2 9.2 39 171-211 20-58 (178)
258 cd02019 NK Nucleoside/nucleoti 95.0 0.046 9.9E-07 41.9 4.7 32 176-210 2-33 (69)
259 cd01890 LepA LepA subfamily. 95.0 0.21 4.5E-06 45.4 10.0 66 279-346 65-131 (179)
260 cd00154 Rab Rab family. Rab G 94.9 0.36 7.9E-06 42.2 11.3 67 279-346 47-117 (159)
261 COG3598 RepA RecA-family ATPas 94.9 0.028 6.1E-07 55.5 4.2 42 175-216 90-141 (402)
262 PF01695 IstB_IS21: IstB-like 94.9 0.037 8.1E-07 51.0 4.8 37 174-211 48-84 (178)
263 PF03796 DnaB_C: DnaB-like hel 94.9 0.042 9.1E-07 53.9 5.4 40 175-214 20-60 (259)
264 PF02606 LpxK: Tetraacyldisacc 94.9 0.087 1.9E-06 53.4 7.7 39 174-212 36-75 (326)
265 PF01926 MMR_HSR1: 50S ribosom 94.8 0.35 7.6E-06 40.7 10.4 62 280-343 46-116 (116)
266 PTZ00416 elongation factor 2; 94.8 0.12 2.7E-06 59.2 9.6 68 279-347 90-157 (836)
267 PRK08533 flagellar accessory p 94.8 0.056 1.2E-06 52.1 5.9 39 174-213 25-63 (230)
268 PRK09302 circadian clock prote 94.8 0.075 1.6E-06 57.6 7.5 40 174-214 32-72 (509)
269 cd04160 Arfrp1 Arfrp1 subfamil 94.8 0.4 8.6E-06 43.0 11.2 67 279-346 48-119 (167)
270 cd01867 Rab8_Rab10_Rab13_like 94.7 0.51 1.1E-05 42.4 11.9 66 280-346 51-120 (167)
271 COG1159 Era GTPase [General fu 94.7 0.25 5.3E-06 48.7 10.1 111 175-346 8-126 (298)
272 cd04112 Rab26 Rab26 subfamily. 94.7 0.44 9.6E-06 44.1 11.7 66 280-346 49-118 (191)
273 PRK06526 transposase; Provisio 94.7 0.023 5E-07 55.6 3.0 35 175-210 100-134 (254)
274 cd01882 BMS1 Bms1. Bms1 is an 94.7 0.42 9.1E-06 45.8 11.7 64 280-346 82-145 (225)
275 PRK12735 elongation factor Tu; 94.7 0.22 4.8E-06 52.1 10.5 68 279-346 73-140 (396)
276 PRK03003 GTP-binding protein D 94.7 0.26 5.7E-06 52.8 11.2 67 279-346 84-158 (472)
277 cd04110 Rab35 Rab35 subfamily. 94.6 0.44 9.6E-06 44.5 11.5 65 281-346 55-122 (199)
278 PRK06067 flagellar accessory p 94.6 0.062 1.4E-06 51.8 5.8 38 174-212 26-63 (234)
279 cd02025 PanK Pantothenate kina 94.6 0.048 1E-06 52.1 4.9 39 175-214 1-41 (220)
280 COG0467 RAD55 RecA-superfamily 94.6 0.062 1.3E-06 52.7 5.8 42 173-215 23-64 (260)
281 cd01888 eIF2_gamma eIF2-gamma 94.6 0.32 6.9E-06 45.7 10.4 66 281-346 83-149 (203)
282 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.07 1.5E-06 51.2 5.9 39 174-213 21-59 (229)
283 cd01864 Rab19 Rab19 subfamily. 94.5 0.39 8.5E-06 43.1 10.4 65 281-346 52-120 (165)
284 TIGR03600 phage_DnaB phage rep 94.4 0.055 1.2E-06 57.1 5.3 38 176-213 196-234 (421)
285 smart00175 RAB Rab subfamily o 94.4 0.66 1.4E-05 41.2 11.6 66 280-346 48-117 (164)
286 cd04148 RGK RGK subfamily. Th 94.4 1.2 2.6E-05 42.4 14.0 64 280-346 49-118 (221)
287 TIGR03594 GTPase_EngA ribosome 94.4 0.31 6.7E-06 51.5 10.8 68 279-347 45-120 (429)
288 cd04106 Rab23_lke Rab23-like s 94.3 0.56 1.2E-05 41.7 11.1 88 279-371 49-139 (162)
289 cd02023 UMPK Uridine monophosp 94.3 0.06 1.3E-06 50.4 4.7 37 175-214 1-37 (198)
290 TIGR02238 recomb_DMC1 meiotic 94.3 0.086 1.9E-06 53.2 6.0 39 175-213 97-141 (313)
291 PLN00043 elongation factor 1-a 94.2 0.22 4.9E-06 52.8 9.4 69 278-346 82-157 (447)
292 PRK09183 transposase/IS protei 94.2 0.072 1.6E-06 52.3 5.2 36 174-210 103-138 (259)
293 cd04161 Arl2l1_Arl13_like Arl2 94.2 0.94 2E-05 40.9 12.3 67 279-346 41-112 (167)
294 COG4108 PrfC Peptide chain rel 94.2 0.23 4.9E-06 51.3 8.7 86 279-371 79-164 (528)
295 cd04175 Rap1 Rap1 subgroup. T 94.1 0.75 1.6E-05 41.1 11.5 67 280-347 48-119 (164)
296 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.099 2.1E-06 50.0 6.0 38 174-212 17-54 (224)
297 PRK05595 replicative DNA helic 94.1 0.07 1.5E-06 56.7 5.3 39 175-213 202-241 (444)
298 PF08433 KTI12: Chromatin asso 94.1 0.066 1.4E-06 52.8 4.6 37 175-212 3-39 (270)
299 PRK06217 hypothetical protein; 94.1 0.07 1.5E-06 49.3 4.6 33 174-212 2-34 (183)
300 PRK12377 putative replication 94.0 0.083 1.8E-06 51.4 5.1 36 175-211 103-138 (248)
301 cd04118 Rab24 Rab24 subfamily. 94.0 0.75 1.6E-05 42.5 11.4 65 281-346 50-117 (193)
302 cd04109 Rab28 Rab28 subfamily. 93.9 0.71 1.5E-05 43.7 11.4 87 280-370 49-141 (215)
303 TIGR00041 DTMP_kinase thymidyl 93.9 0.1 2.2E-06 48.6 5.4 36 174-210 4-39 (195)
304 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.9 1.2 2.5E-05 39.9 12.3 66 280-346 50-119 (166)
305 cd01672 TMPK Thymidine monopho 93.9 0.092 2E-06 48.7 5.2 35 175-210 2-36 (200)
306 cd04136 Rap_like Rap-like subf 93.9 0.95 2.1E-05 40.2 11.7 65 281-346 49-118 (163)
307 COG2874 FlaH Predicted ATPases 93.9 0.22 4.9E-06 46.7 7.4 101 175-288 30-131 (235)
308 PRK08118 topology modulation p 93.9 0.07 1.5E-06 48.7 4.2 25 173-198 1-25 (167)
309 PRK10463 hydrogenase nickel in 93.9 0.37 8E-06 47.8 9.4 39 174-214 105-143 (290)
310 cd04101 RabL4 RabL4 (Rab-like4 93.9 0.79 1.7E-05 40.8 11.1 67 279-346 50-119 (164)
311 cd04115 Rab33B_Rab33A Rab33B/R 93.8 0.85 1.8E-05 41.2 11.3 67 279-346 49-121 (170)
312 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.12 2.6E-06 50.0 5.9 39 174-213 22-60 (237)
313 TIGR03420 DnaA_homol_Hda DnaA 93.8 0.097 2.1E-06 49.9 5.2 38 175-213 40-77 (226)
314 PRK05306 infB translation init 93.8 0.54 1.2E-05 53.2 11.7 67 279-346 335-401 (787)
315 cd01860 Rab5_related Rab5-rela 93.8 0.75 1.6E-05 40.9 10.8 66 280-346 49-118 (163)
316 cd04120 Rab12 Rab12 subfamily. 93.8 2.4 5.3E-05 39.8 14.6 67 280-347 48-118 (202)
317 PRK08506 replicative DNA helic 93.8 0.089 1.9E-06 56.3 5.3 39 176-214 194-232 (472)
318 COG4240 Predicted kinase [Gene 93.7 0.095 2.1E-06 49.4 4.6 38 175-212 51-89 (300)
319 cd04111 Rab39 Rab39 subfamily. 93.7 3.3 7E-05 39.1 15.4 87 280-370 51-141 (211)
320 cd01868 Rab11_like Rab11-like. 93.7 0.71 1.5E-05 41.3 10.4 66 280-346 51-120 (165)
321 COG1663 LpxK Tetraacyldisaccha 93.7 0.21 4.6E-06 50.1 7.4 41 174-214 48-89 (336)
322 PRK09270 nucleoside triphospha 93.7 0.12 2.6E-06 49.7 5.5 40 173-213 33-73 (229)
323 cd01866 Rab2 Rab2 subfamily. 93.6 0.73 1.6E-05 41.5 10.5 65 281-346 53-121 (168)
324 cd00009 AAA The AAA+ (ATPases 93.6 0.12 2.7E-06 44.6 5.2 39 175-214 21-59 (151)
325 cd01895 EngA2 EngA2 subfamily. 93.6 1.3 2.8E-05 39.4 12.2 67 279-346 48-125 (174)
326 COG1160 Predicted GTPases [Gen 93.6 0.63 1.4E-05 48.5 10.9 69 278-347 48-125 (444)
327 cd01898 Obg Obg subfamily. Th 93.6 1 2.2E-05 40.4 11.4 64 282-346 49-126 (170)
328 cd04107 Rab32_Rab38 Rab38/Rab3 93.6 3.8 8.2E-05 38.2 15.6 86 279-369 48-141 (201)
329 TIGR00416 sms DNA repair prote 93.5 0.11 2.3E-06 55.3 5.4 37 176-212 96-132 (454)
330 PRK08760 replicative DNA helic 93.5 0.092 2E-06 56.2 4.9 40 175-214 230-270 (476)
331 COG0480 FusA Translation elong 93.5 0.38 8.2E-06 53.6 9.7 96 278-380 72-169 (697)
332 PRK11823 DNA repair protein Ra 93.5 0.11 2.4E-06 55.1 5.5 37 176-212 82-118 (446)
333 PLN00116 translation elongatio 93.5 0.29 6.2E-06 56.3 9.1 66 280-346 97-162 (843)
334 PLN03110 Rab GTPase; Provision 93.5 2.9 6.2E-05 39.7 14.7 65 281-346 61-129 (216)
335 PRK06749 replicative DNA helic 93.4 0.1 2.2E-06 55.1 5.0 39 176-214 188-226 (428)
336 TIGR00554 panK_bact pantothena 93.4 0.15 3.2E-06 50.8 5.9 41 173-214 62-104 (290)
337 PF01935 DUF87: Domain of unkn 93.4 0.12 2.7E-06 49.5 5.1 38 174-212 24-62 (229)
338 PRK09554 feoB ferrous iron tra 93.4 0.73 1.6E-05 52.3 11.9 89 279-375 48-148 (772)
339 PLN02924 thymidylate kinase 93.3 0.15 3.3E-06 48.7 5.6 40 169-209 12-51 (220)
340 cd04126 Rab20 Rab20 subfamily. 93.3 5.6 0.00012 37.9 16.4 68 279-347 42-113 (220)
341 cd04119 RJL RJL (RabJ-Like) su 93.3 1.5 3.3E-05 38.8 12.1 68 279-346 47-122 (168)
342 PRK06835 DNA replication prote 93.3 0.1 2.3E-06 52.9 4.7 38 174-212 184-221 (329)
343 PRK00131 aroK shikimate kinase 93.3 0.093 2E-06 47.6 4.0 33 174-212 5-37 (175)
344 cd04102 RabL3 RabL3 (Rab-like3 93.3 3.6 7.9E-05 38.7 14.8 96 279-375 52-170 (202)
345 cd01861 Rab6 Rab6 subfamily. 93.3 1.4 2.9E-05 39.1 11.6 65 281-346 49-117 (161)
346 PTZ00035 Rad51 protein; Provis 93.3 0.17 3.8E-06 51.6 6.3 39 173-212 118-162 (337)
347 PRK09519 recA DNA recombinatio 93.3 0.19 4.1E-06 56.4 7.0 40 175-214 61-100 (790)
348 PF00154 RecA: recA bacterial 93.3 0.15 3.4E-06 51.3 5.7 40 173-213 53-92 (322)
349 PRK00093 GTP-binding protein D 93.3 2 4.3E-05 45.5 14.6 67 279-346 219-296 (435)
350 PF13173 AAA_14: AAA domain 93.2 0.13 2.7E-06 44.6 4.5 39 174-214 3-41 (128)
351 cd04108 Rab36_Rab34 Rab34/Rab3 93.2 0.82 1.8E-05 41.5 10.1 67 280-346 48-118 (170)
352 COG2403 Predicted GTPase [Gene 93.2 0.12 2.7E-06 52.0 4.9 37 174-210 127-163 (449)
353 cd04113 Rab4 Rab4 subfamily. 93.2 1.5 3.3E-05 38.9 11.8 66 280-346 48-117 (161)
354 PF06745 KaiC: KaiC; InterPro 93.2 0.12 2.5E-06 49.6 4.6 38 175-213 21-59 (226)
355 cd04140 ARHI_like ARHI subfami 93.2 2.1 4.5E-05 38.4 12.7 66 280-346 48-120 (165)
356 PRK08939 primosomal protein Dn 93.2 0.13 2.9E-06 51.7 5.1 37 174-211 157-193 (306)
357 PRK10512 selenocysteinyl-tRNA- 93.1 0.37 8.1E-06 53.3 8.9 66 281-346 51-116 (614)
358 cd01878 HflX HflX subfamily. 93.0 1.4 3.1E-05 41.0 11.8 66 280-346 88-165 (204)
359 PTZ00133 ADP-ribosylation fact 93.0 6.6 0.00014 36.0 16.0 67 279-346 59-130 (182)
360 TIGR00235 udk uridine kinase. 93.0 0.13 2.8E-06 48.6 4.5 38 173-213 6-43 (207)
361 TIGR00665 DnaB replicative DNA 93.0 0.14 3E-06 54.3 5.3 39 176-214 197-236 (434)
362 PRK08006 replicative DNA helic 92.9 0.14 3E-06 54.7 5.2 39 175-213 225-264 (471)
363 PF05729 NACHT: NACHT domain 92.9 0.12 2.5E-06 46.3 4.0 26 177-202 3-28 (166)
364 PRK07560 elongation factor EF- 92.9 0.33 7.1E-06 55.0 8.3 67 279-346 85-151 (731)
365 PF02572 CobA_CobO_BtuR: ATP:c 92.9 0.17 3.6E-06 46.3 4.9 34 176-210 6-39 (172)
366 PRK08727 hypothetical protein; 92.8 0.15 3.2E-06 49.3 4.8 36 175-211 43-78 (233)
367 PRK09866 hypothetical protein; 92.8 0.45 9.7E-06 52.0 8.7 66 279-346 228-301 (741)
368 TIGR02655 circ_KaiC circadian 92.8 0.26 5.6E-06 53.0 7.1 38 174-212 22-60 (484)
369 PLN03187 meiotic recombination 92.8 0.21 4.6E-06 50.9 6.1 38 175-212 127-170 (344)
370 PRK05433 GTP-binding protein L 92.8 0.57 1.2E-05 51.7 9.8 67 279-346 72-138 (600)
371 PRK12317 elongation factor 1-a 92.8 0.8 1.7E-05 48.4 10.7 68 279-346 82-151 (425)
372 PRK08903 DnaA regulatory inact 92.8 0.16 3.6E-06 48.5 5.0 37 175-212 44-80 (227)
373 PRK05642 DNA replication initi 92.8 0.15 3.2E-06 49.3 4.7 36 176-212 48-83 (234)
374 PRK04328 hypothetical protein; 92.8 0.21 4.5E-06 48.7 5.7 39 174-213 24-62 (249)
375 PF12846 AAA_10: AAA-like doma 92.7 0.15 3.2E-06 50.6 4.8 33 179-211 6-38 (304)
376 cd04128 Spg1 Spg1p. Spg1p (se 92.7 2.2 4.7E-05 39.3 12.3 65 280-346 48-116 (182)
377 cd00878 Arf_Arl Arf (ADP-ribos 92.7 0.91 2E-05 40.2 9.5 66 280-346 42-112 (158)
378 TIGR00475 selB selenocysteine- 92.7 0.3 6.6E-06 53.7 7.5 67 280-346 49-115 (581)
379 TIGR00487 IF-2 translation ini 92.6 1.2 2.7E-05 48.9 12.1 64 282-346 136-199 (587)
380 PLN03108 Rab family protein; P 92.6 5.3 0.00011 37.6 15.0 112 281-417 55-172 (210)
381 PLN03046 D-glycerate 3-kinase; 92.6 0.2 4.4E-06 52.0 5.5 41 173-214 212-252 (460)
382 cd00876 Ras Ras family. The R 92.5 1.5 3.2E-05 38.6 10.6 67 280-347 46-117 (160)
383 PLN03118 Rab family protein; P 92.5 1.5 3.2E-05 41.3 11.2 66 280-346 61-132 (211)
384 PRK11537 putative GTP-binding 92.5 0.86 1.9E-05 46.1 9.9 37 176-214 6-42 (318)
385 PRK06904 replicative DNA helic 92.5 0.16 3.6E-06 54.2 5.0 38 176-213 223-261 (472)
386 PRK04040 adenylate kinase; Pro 92.5 0.17 3.6E-06 47.2 4.4 31 173-205 2-32 (188)
387 PRK07933 thymidylate kinase; V 92.4 0.28 6.1E-06 46.6 6.1 37 175-212 2-38 (213)
388 cd04145 M_R_Ras_like M-Ras/R-R 92.4 1.8 3.9E-05 38.4 11.2 66 281-347 50-120 (164)
389 PRK08840 replicative DNA helic 92.4 0.18 3.9E-06 53.8 5.2 39 175-213 218-257 (464)
390 PLN00223 ADP-ribosylation fact 92.4 7.5 0.00016 35.6 15.5 83 279-371 59-146 (181)
391 cd04123 Rab21 Rab21 subfamily. 92.4 2.4 5.2E-05 37.3 11.9 66 281-347 49-118 (162)
392 PRK05748 replicative DNA helic 92.4 0.17 3.7E-06 53.9 5.0 39 176-214 205-244 (448)
393 cd04138 H_N_K_Ras_like H-Ras/N 92.4 2.8 6.2E-05 36.8 12.3 65 281-346 49-118 (162)
394 PRK08181 transposase; Validate 92.3 0.17 3.7E-06 49.9 4.5 36 174-210 107-142 (269)
395 TIGR03172 probable selenium-de 92.3 0.16 3.5E-06 48.7 4.2 31 175-208 1-31 (232)
396 COG1102 Cmk Cytidylate kinase 92.3 0.12 2.6E-06 46.3 3.0 23 175-198 2-24 (179)
397 cd01865 Rab3 Rab3 subfamily. 92.3 2.2 4.7E-05 38.2 11.6 67 281-347 50-119 (165)
398 cd04144 Ras2 Ras2 subfamily. 92.3 2.7 5.9E-05 38.7 12.5 65 281-346 47-118 (190)
399 PRK06547 hypothetical protein; 92.3 0.17 3.6E-06 46.5 4.1 35 173-213 15-49 (172)
400 PLN03186 DNA repair protein RA 92.3 0.28 6E-06 50.1 6.1 39 175-213 124-168 (342)
401 PRK07261 topology modulation p 92.3 0.17 3.6E-06 46.4 4.1 23 175-198 2-24 (171)
402 cd04142 RRP22 RRP22 subfamily. 92.2 2.9 6.4E-05 39.0 12.7 66 280-346 48-128 (198)
403 PLN02796 D-glycerate 3-kinase 92.2 0.22 4.8E-06 50.6 5.2 39 174-213 101-139 (347)
404 PRK06893 DNA replication initi 92.2 0.19 4.2E-06 48.3 4.7 36 175-211 41-76 (229)
405 PRK06761 hypothetical protein; 92.2 0.18 3.8E-06 50.0 4.4 38 174-212 4-42 (282)
406 CHL00189 infB translation init 92.2 0.59 1.3E-05 52.5 9.0 66 280-346 294-359 (742)
407 smart00178 SAR Sar1p-like memb 92.1 4.1 8.9E-05 37.4 13.4 83 279-371 59-146 (184)
408 cd04121 Rab40 Rab40 subfamily. 92.1 4.4 9.6E-05 37.6 13.6 86 280-370 54-142 (189)
409 cd04154 Arl2 Arl2 subfamily. 92.1 2 4.3E-05 38.9 11.1 66 280-346 57-127 (173)
410 cd01892 Miro2 Miro2 subfamily. 92.1 8.7 0.00019 34.6 15.3 84 282-370 55-140 (169)
411 PRK06321 replicative DNA helic 92.1 0.21 4.5E-06 53.4 5.1 39 176-214 228-267 (472)
412 cd01131 PilT Pilus retraction 92.0 2.6 5.6E-05 39.4 12.0 35 175-210 3-38 (198)
413 PF13086 AAA_11: AAA domain; P 92.0 0.16 3.4E-06 48.2 3.7 34 176-209 19-60 (236)
414 PRK08116 hypothetical protein; 91.9 0.24 5.3E-06 48.8 5.1 35 176-211 117-151 (268)
415 KOG2749 mRNA cleavage and poly 91.9 0.3 6.5E-06 49.1 5.6 44 173-217 103-146 (415)
416 PF13604 AAA_30: AAA domain; P 91.9 0.26 5.5E-06 46.2 5.0 35 176-210 20-54 (196)
417 PF02421 FeoB_N: Ferrous iron 91.8 0.64 1.4E-05 41.8 7.2 92 279-378 45-144 (156)
418 PF02492 cobW: CobW/HypB/UreG, 91.8 0.32 6.9E-06 44.8 5.4 141 177-346 3-153 (178)
419 PF13671 AAA_33: AAA domain; P 91.8 0.14 3.1E-06 44.8 2.9 31 177-212 2-32 (143)
420 cd04153 Arl5_Arl8 Arl5/Arl8 su 91.7 4.8 0.0001 36.4 13.3 67 279-346 57-128 (174)
421 cd04117 Rab15 Rab15 subfamily. 91.7 3.1 6.7E-05 37.1 11.8 66 281-346 49-117 (161)
422 PRK09165 replicative DNA helic 91.7 0.23 5E-06 53.5 5.0 39 176-214 219-272 (497)
423 TIGR02475 CobW cobalamin biosy 91.7 4.1 8.8E-05 41.7 13.9 38 176-215 6-43 (341)
424 PTZ00301 uridine kinase; Provi 91.7 0.34 7.3E-06 46.0 5.5 40 174-214 4-45 (210)
425 PRK09518 bifunctional cytidyla 91.7 1.5 3.2E-05 49.6 11.6 67 279-346 321-395 (712)
426 COG1072 CoaA Panthothenate kin 91.6 0.34 7.3E-06 47.2 5.5 41 173-214 82-124 (283)
427 cd02024 NRK1 Nicotinamide ribo 91.6 0.17 3.7E-06 47.0 3.4 34 175-213 1-34 (187)
428 cd01863 Rab18 Rab18 subfamily. 91.6 3.2 6.9E-05 36.7 11.7 66 280-346 48-118 (161)
429 KOG3381 Uncharacterized conser 91.6 0.55 1.2E-05 41.0 6.2 59 73-131 32-97 (161)
430 PRK06921 hypothetical protein; 91.6 0.26 5.6E-06 48.6 4.8 37 173-210 117-154 (266)
431 PRK13947 shikimate kinase; Pro 91.6 0.27 5.8E-06 44.6 4.7 32 175-212 3-34 (171)
432 PRK06851 hypothetical protein; 91.5 0.4 8.7E-06 49.3 6.3 42 170-212 211-252 (367)
433 TIGR03594 GTPase_EngA ribosome 91.5 1.7 3.8E-05 45.8 11.5 66 280-346 219-295 (429)
434 PRK05506 bifunctional sulfate 91.5 0.25 5.4E-06 55.0 5.2 43 172-215 459-501 (632)
435 PRK03731 aroL shikimate kinase 91.5 0.23 5E-06 45.2 4.1 36 172-213 1-36 (171)
436 COG0237 CoaE Dephospho-CoA kin 91.5 0.25 5.4E-06 46.4 4.4 34 172-212 1-34 (201)
437 PRK05636 replicative DNA helic 91.5 0.26 5.7E-06 53.0 5.1 40 175-214 266-306 (505)
438 cd04114 Rab30 Rab30 subfamily. 91.4 3.6 7.9E-05 36.7 12.0 65 281-346 56-124 (169)
439 COG0572 Udk Uridine kinase [Nu 91.4 0.25 5.4E-06 46.7 4.3 39 174-215 9-47 (218)
440 PRK08084 DNA replication initi 91.4 0.28 6E-06 47.4 4.7 37 175-212 47-83 (235)
441 smart00174 RHO Rho (Ras homolo 91.3 1.3 2.8E-05 40.0 8.9 67 279-346 44-114 (174)
442 PF13401 AAA_22: AAA domain; P 91.3 0.22 4.8E-06 42.8 3.6 39 176-214 6-49 (131)
443 TIGR02239 recomb_RAD51 DNA rep 91.2 0.45 9.8E-06 48.1 6.3 39 174-213 97-141 (316)
444 cd01862 Rab7 Rab7 subfamily. 91.0 2.3 5.1E-05 38.0 10.4 65 282-347 50-122 (172)
445 TIGR01393 lepA GTP-binding pro 91.0 1.5 3.3E-05 48.4 10.6 84 280-370 69-152 (595)
446 PF00004 AAA: ATPase family as 91.0 0.35 7.6E-06 41.4 4.6 31 179-212 3-33 (132)
447 cd04155 Arl3 Arl3 subfamily. 91.0 3.4 7.3E-05 37.1 11.4 21 174-195 15-35 (173)
448 KOG2743 Cobalamin synthesis pr 91.0 1.9 4.2E-05 42.5 9.9 34 176-212 59-93 (391)
449 TIGR02729 Obg_CgtA Obg family 90.9 4.1 8.8E-05 41.5 12.9 65 281-346 205-285 (329)
450 cd04162 Arl9_Arfrp2_like Arl9/ 90.9 2.7 5.9E-05 37.8 10.6 67 279-346 42-111 (164)
451 COG1936 Predicted nucleotide k 90.9 0.27 5.8E-06 44.6 3.7 27 175-206 2-28 (180)
452 PRK12339 2-phosphoglycerate ki 90.9 0.27 5.9E-06 46.1 4.0 33 176-212 5-37 (197)
453 PRK12297 obgE GTPase CgtA; Rev 90.9 13 0.00029 39.1 17.0 66 280-346 205-286 (424)
454 PRK07004 replicative DNA helic 90.8 0.3 6.5E-06 52.1 4.8 39 176-214 215-254 (460)
455 PRK00698 tmk thymidylate kinas 90.8 0.43 9.4E-06 44.6 5.5 35 173-208 3-37 (205)
456 PRK00081 coaE dephospho-CoA ki 90.8 0.29 6.3E-06 45.8 4.2 35 172-213 1-35 (194)
457 cd02021 GntK Gluconate kinase 90.8 0.23 5E-06 44.0 3.4 32 178-214 3-34 (150)
458 PRK14490 putative bifunctional 90.8 0.49 1.1E-05 49.0 6.2 39 173-213 5-43 (369)
459 PF09848 DUF2075: Uncharacteri 90.8 0.3 6.5E-06 50.2 4.6 38 175-212 2-41 (352)
460 smart00177 ARF ARF-like small 90.7 8.1 0.00018 35.0 13.7 83 279-370 55-141 (175)
461 PRK05537 bifunctional sulfate 90.7 0.35 7.5E-06 53.0 5.2 40 173-213 392-432 (568)
462 PTZ00369 Ras-like protein; Pro 90.7 7.4 0.00016 35.8 13.6 65 281-346 53-122 (189)
463 KOG0460 Mitochondrial translat 90.7 0.6 1.3E-05 46.7 6.2 66 282-347 118-183 (449)
464 cd04151 Arl1 Arl1 subfamily. 90.5 3.7 8E-05 36.3 11.0 66 280-346 42-112 (158)
465 PRK13946 shikimate kinase; Pro 90.4 0.32 7E-06 45.0 4.1 33 174-212 11-43 (184)
466 TIGR02236 recomb_radA DNA repa 90.4 0.35 7.6E-06 48.7 4.6 39 174-213 96-140 (310)
467 PF13238 AAA_18: AAA domain; P 90.3 0.27 5.8E-06 41.9 3.2 20 179-198 3-22 (129)
468 PRK03003 GTP-binding protein D 90.3 2.3 4.9E-05 45.7 11.0 43 302-346 291-334 (472)
469 PLN02348 phosphoribulokinase 90.3 0.53 1.1E-05 48.6 5.8 41 173-214 49-104 (395)
470 PRK05380 pyrG CTP synthetase; 90.3 0.96 2.1E-05 48.5 7.9 47 172-218 1-48 (533)
471 PTZ00451 dephospho-CoA kinase; 90.2 0.37 8.1E-06 46.7 4.4 35 173-213 1-35 (244)
472 COG0523 Putative GTPases (G3E 90.2 5.1 0.00011 40.6 12.7 144 176-347 3-158 (323)
473 PF00931 NB-ARC: NB-ARC domain 90.2 0.3 6.5E-06 48.3 3.9 42 172-214 18-61 (287)
474 cd04146 RERG_RasL11_like RERG/ 90.1 3.4 7.4E-05 36.8 10.5 65 281-346 47-118 (165)
475 PHA02530 pseT polynucleotide k 90.1 0.29 6.2E-06 49.0 3.7 36 173-213 2-37 (300)
476 cd04177 RSR1 RSR1 subgroup. R 90.1 5.6 0.00012 35.6 11.9 65 281-346 49-118 (168)
477 TIGR00073 hypB hydrogenase acc 89.9 0.61 1.3E-05 44.0 5.6 39 173-213 22-60 (207)
478 PF03266 NTPase_1: NTPase; In 89.9 0.48 1E-05 43.2 4.6 30 179-208 4-33 (168)
479 cd04147 Ras_dva Ras-dva subfam 89.8 3 6.5E-05 38.8 10.2 65 281-346 47-116 (198)
480 PRK14730 coaE dephospho-CoA ki 89.7 0.48 1E-05 44.4 4.6 34 174-213 2-35 (195)
481 PF13191 AAA_16: AAA ATPase do 89.6 0.45 9.8E-06 43.4 4.4 39 174-213 25-63 (185)
482 COG0468 RecA RecA/RadA recombi 89.6 0.56 1.2E-05 46.3 5.2 39 173-212 60-98 (279)
483 PRK04220 2-phosphoglycerate ki 89.6 0.58 1.3E-05 46.7 5.3 37 173-214 92-128 (301)
484 PF06414 Zeta_toxin: Zeta toxi 89.6 0.37 8E-06 45.2 3.8 40 174-215 15-54 (199)
485 PLN02422 dephospho-CoA kinase 89.6 0.46 1E-05 45.7 4.4 34 173-213 1-34 (232)
486 PRK13973 thymidylate kinase; P 89.5 0.65 1.4E-05 44.1 5.4 35 174-209 4-38 (213)
487 cd01893 Miro1 Miro1 subfamily. 89.4 4.9 0.00011 36.0 11.0 68 279-347 45-116 (166)
488 PRK14734 coaE dephospho-CoA ki 89.4 0.54 1.2E-05 44.2 4.7 33 173-212 1-33 (200)
489 PRK04301 radA DNA repair and r 89.2 0.48 1E-05 47.9 4.6 39 175-213 103-147 (317)
490 PRK13695 putative NTPase; Prov 89.1 0.73 1.6E-05 42.1 5.3 31 175-206 2-32 (174)
491 TIGR02034 CysN sulfate adenyly 89.1 0.51 1.1E-05 49.6 4.8 68 279-346 78-145 (406)
492 cd04156 ARLTS1 ARLTS1 subfamil 89.0 5.3 0.00012 35.2 10.8 66 280-346 43-113 (160)
493 PRK03839 putative kinase; Prov 88.9 0.47 1E-05 43.5 4.0 31 175-211 2-32 (180)
494 PF00025 Arf: ADP-ribosylation 88.9 9.7 0.00021 34.7 12.7 83 279-371 56-143 (175)
495 COG1855 ATPase (PilT family) [ 88.8 0.31 6.6E-06 50.6 2.7 40 165-205 255-294 (604)
496 PRK13949 shikimate kinase; Pro 88.7 0.41 8.9E-06 43.7 3.3 34 173-212 1-34 (169)
497 PRK09302 circadian clock prote 88.6 0.68 1.5E-05 50.2 5.5 40 173-213 273-312 (509)
498 cd04116 Rab9 Rab9 subfamily. 88.5 8.6 0.00019 34.3 12.0 84 280-369 53-144 (170)
499 PRK01184 hypothetical protein; 88.5 0.56 1.2E-05 43.2 4.2 31 173-210 1-31 (184)
500 COG2895 CysN GTPases - Sulfate 88.5 1.1 2.3E-05 45.2 6.2 102 279-380 84-185 (431)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=2.2e-50 Score=412.14 Aligned_cols=341 Identities=34% Similarity=0.550 Sum_probs=282.2
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEeecc
Q 010156 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (516)
Q Consensus 75 ~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~ 154 (516)
..+++|+++|++|.||+++.|||++|+|.++.+++ +.+.|.++++.+.||..+.+++++++++..++|++++.+++..
T Consensus 12 ~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 12 ALRAMVAGTLANFQHPTLKHNLTTLKALHHVALLD--DTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred chHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 46799999999999999999999999999999998 7999999999999999999999999999999999999887765
Q ss_pred CCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCC
Q 010156 155 QPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK 234 (516)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~ 234 (516)
...... ...-...+++++++|+|+|+||||||||+|+|||.+||+.|+||++||+|+|+++++.+||.+...... ...
T Consensus 90 ~~~~~~-~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~~ 167 (369)
T PRK11670 90 NIATLK-RVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PDG 167 (369)
T ss_pred ehhhhc-cccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cCC
Confidence 322110 000123577889999999999999999999999999999999999999999999998888864321111 112
Q ss_pred CceeeeccCCceEEcCCC--CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEe
Q 010156 235 RTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVT 312 (516)
Q Consensus 235 ~~i~~~~~~~l~vl~~~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~ 312 (516)
..+.+....++...+.+. .......|++++....+.+++....|++||||||||||++++..++..++.++|.+++|+
T Consensus 168 ~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~ 247 (369)
T PRK11670 168 THMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVT 247 (369)
T ss_pred ceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEe
Confidence 334443334444333322 122345577887777888877554568999999999999998777777777899999999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCC
Q 010156 313 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (516)
Q Consensus 313 ~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (516)
+|+..++.++.+.++++.+.+++++|+|+||+.+.+. ++..+.|+++..+++++.++.++++.||++..+.++.+.|+
T Consensus 248 tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~ 327 (369)
T PRK11670 248 TPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGT 327 (369)
T ss_pred cCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCC
Confidence 9999999999999999999999999999999876643 33344577788999999999999999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 010156 391 PEVAADPCGEVANTFQDLGVCVVQQCAKI 419 (516)
Q Consensus 391 pl~~~~p~s~~~~~~~~La~~i~~~~~~~ 419 (516)
|+..+.|+++.+++|.+||++|.+++...
T Consensus 328 Pv~~~~p~s~~a~~y~~LA~el~~~~~~~ 356 (369)
T PRK11670 328 PTVVSRPESEFTAIYRQLADRVAAQLYWQ 356 (369)
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999987544
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-43 Score=331.54 Aligned_cols=252 Identities=42% Similarity=0.682 Sum_probs=228.7
Q ss_pred cccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-eccCC
Q 010156 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLG 244 (516)
Q Consensus 166 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~-~~~~~ 244 (516)
+.++.+..++|+|.|+||||||||+|+|||.+||+.|++|.++|+|..+|+++.++|.+.+..... ...+.| ....|
T Consensus 40 ~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~--~~g~~Pv~~~~~ 117 (300)
T KOG3022|consen 40 QENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQS--DNGWIPVVVNKN 117 (300)
T ss_pred cccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeec--CCCceeeeecCC
Confidence 567888999999999999999999999999999999999999999999999999999988763322 233334 56679
Q ss_pred ceEEcCCCCC---CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCC-CeEEEEeCCCcchHH
Q 010156 245 VKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFI 320 (516)
Q Consensus 245 l~vl~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~-d~viiV~~p~~~s~~ 320 (516)
+.++++++.. ++..+|+++....+|++++....|++.||+|||||||+++.++++.+.... +++++|++|+..++.
T Consensus 118 l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~ 197 (300)
T KOG3022|consen 118 LKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQ 197 (300)
T ss_pred eEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhH
Confidence 9999999754 447899999999999999999999999999999999999999988766655 889999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccC--CCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCC
Q 010156 321 DVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 398 (516)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~ 398 (516)
++.+.++++++.+++++|+|.||..|.+ +++..+.|+.+..+.+++++|+++++.||.|+.+.++.+.|.|+++..|+
T Consensus 198 Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~ 277 (300)
T KOG3022|consen 198 DVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPD 277 (300)
T ss_pred HHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCC
Confidence 9999999999999999999999999987 36777789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 010156 399 GEVANTFQDLGVCVVQQCAKI 419 (516)
Q Consensus 399 s~~~~~~~~La~~i~~~~~~~ 419 (516)
++++++|.+++.+|.+.+...
T Consensus 278 s~~~~af~~i~~~i~~~~~~~ 298 (300)
T KOG3022|consen 278 SPASEAFEDIAEKLVEQLSSK 298 (300)
T ss_pred chHHHHHHHHHHHHHHhhccc
Confidence 999999999999999887654
No 3
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=7.5e-32 Score=268.38 Aligned_cols=237 Identities=24% Similarity=0.315 Sum_probs=184.6
Q ss_pred cccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------cccCCCCCceee
Q 010156 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP 239 (516)
Q Consensus 168 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~--------~~~~~~~~~i~~ 239 (516)
..++++++|+|+|+||||||||+|+|||.+|++.|+||++||+|++.++++.++|.+... .+.....+.+..
T Consensus 10 ~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 10 KSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred hcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 456678999999999999999999999999999999999999999988888888875321 111112233333
Q ss_pred -eccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 010156 240 -TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (516)
Q Consensus 240 -~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s 318 (516)
..++|++++|++...... .+. ...+.++++.+.+..||||||||||+++...... +.++|.+++|++|+..+
T Consensus 90 ~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~s 162 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEITA 162 (281)
T ss_pred cCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChHH
Confidence 346899999977543221 111 2235556555542389999999999987654433 45789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCC
Q 010156 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 398 (516)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~ 398 (516)
+.++.++++.+++.+....++|+|++..+..... .....+++.+.++.++++.||++..+.+|...|+|+.++.|+
T Consensus 163 i~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~ 238 (281)
T CHL00175 163 IRDADRVAGLLEANGIYNVKLLVNRVRPDMIQAN----DMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKL 238 (281)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeccChhhhhhh----ccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCC
Confidence 9999999999998887778999999764321110 011356788889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 010156 399 GEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 399 s~~~~~~~~La~~i~~~ 415 (516)
++++++|++||.+|.++
T Consensus 239 ~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 239 TLSGIAFENAARRLVGK 255 (281)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999998865
No 4
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.5e-32 Score=268.13 Aligned_cols=232 Identities=19% Similarity=0.160 Sum_probs=172.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccc--------cCCCCCceeeecc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 242 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~--~~~~--------~~~~~~~i~~~~~ 242 (516)
||+|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++..++|... .+.+ .....+.+.+. .
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~-~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG-F 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC-C
Confidence 4899999 999999999999999999999999999999999999888766321 1110 01112234443 6
Q ss_pred CCceEEcCCCCCCccc-ccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHH
Q 010156 243 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~-~~~~~~~~~~d~viiV~~p~~~s~~ 320 (516)
+|++++|++....... ..++......+.+.+..+. ++||||||||+++.... ......+.++|.+++|++|+..++.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 7999999765322111 1122222223555555443 78999999998765311 1111112378999999999999999
Q ss_pred HHHHHHHHHHc---CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCC
Q 010156 321 DVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 321 ~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
++.++++.++. .+.++.|+|+|+... . ..++..+++.+.++..+++.||++..+.+|...|+|+..+.|
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~~--~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRNV--D------GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDP 229 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCCC--C------ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCC
Confidence 98888777765 356788999998531 1 123457888899998889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 010156 398 CGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 398 ~s~~~~~~~~La~~i~~~ 415 (516)
+++++++|.+|+++|.++
T Consensus 230 ~s~~a~~y~~La~el~~~ 247 (273)
T PRK13232 230 ESNQAKEYLTLAHNVQNN 247 (273)
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 999999999999999865
No 5
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=8e-32 Score=263.64 Aligned_cols=227 Identities=25% Similarity=0.348 Sum_probs=176.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeeeccCCce
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLGVK 246 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~---~~----~~~~~~~~i~~~~~~~l~ 246 (516)
|+|+|+|+||||||||+|+|||.+|+++|+||++||+|+|++++..++|.+.. +. ......+.+.. ...|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYE-GPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEe-CCCCEE
Confidence 48999999999999999999999999999999999999998888888887542 11 11112223333 346899
Q ss_pred EEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 247 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 247 vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
++|++.......... ...+.+++..+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.+.+
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775432221111 223455555544 789999999999998765544 5578999999999999999988888
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHHHH
Q 010156 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 406 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~ 406 (516)
+.++..+.+.+++|+|++..... ....+++.+.++.++++.||++..+.+|...|+|+.++.|.++++++|+
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~--------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 224 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKT--------ELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFM 224 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhh--------hhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHH
Confidence 88888788889999999653211 1124566677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010156 407 DLGVCVVQQC 416 (516)
Q Consensus 407 ~La~~i~~~~ 416 (516)
+|+++|..+-
T Consensus 225 ~la~~i~~~~ 234 (251)
T TIGR01969 225 ELAAELAGIE 234 (251)
T ss_pred HHHHHHHhcc
Confidence 9999988654
No 6
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=7.6e-31 Score=260.12 Aligned_cols=234 Identities=20% Similarity=0.180 Sum_probs=165.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---cc---CCCCCceeeeccCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EM---NPEKRTIIPTEYLG 244 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~---~~---~~~~~~i~~~~~~~ 244 (516)
||+|+|+ +||||||||+|+|||++||++|+|||+||+|||++++..+++.... +. .. ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 5799999 7999999999999999999999999999999999888777543211 11 00 11112344445689
Q ss_pred ceEEcCCCCCCccccc-CCccHH-HHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHH
Q 010156 245 VKLVSFGFSGQGRAIM-RGPMVS-GVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 245 l~vl~~~~~~~~~~~~-~~~~~~-~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
++++|++......... +..... ..++++......++||||||||++......+ ....+.++|.+++|++|+..++.+
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g 159 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYA 159 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHH
Confidence 9999976332211100 011111 2333321110126799999999765421111 111123789999999999999999
Q ss_pred HHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCC
Q 010156 322 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 322 ~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
+.++++.+++ .++++.|+|+|+.... ..++..+++.+.++.++++.||++..+.+|...|+|++++.|
T Consensus 160 ~~~ll~~i~~~~~~~~l~i~giv~n~~~~~--------~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~p 231 (274)
T PRK13235 160 ANNICKGILKYADAGGVRLGGLICNSRKVD--------NEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYDP 231 (274)
T ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCCCC--------chHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEECC
Confidence 9888876654 3566789999963211 123567888889998888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 010156 398 CGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 398 ~s~~~~~~~~La~~i~~~ 415 (516)
+++++++|.+|+++|.++
T Consensus 232 ~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 232 THPQADEYRALARKIDEN 249 (274)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998755
No 7
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.97 E-value=7.5e-31 Score=262.17 Aligned_cols=241 Identities=19% Similarity=0.165 Sum_probs=175.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc---------CCCCCceeee
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTIIPT 240 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~~~---------~~~~~~i~~~ 240 (516)
.+++|+| +|||||||||+|+|||+.||++|+|||+||+|+|++++..+++.... +.+. ....+.+. .
T Consensus 5 ~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~ 82 (296)
T PRK13236 5 NIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-T 82 (296)
T ss_pred CceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-e
Confidence 4589999 78999999999999999999999999999999999999988775432 1111 12223333 4
Q ss_pred ccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCCCcchH
Q 010156 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~-~~~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
...|++++|++...... ...+......++.+.....|++||||+|||++.... .......+.++|.+++|++|+..++
T Consensus 83 ~~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl 161 (296)
T PRK13236 83 GFRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAM 161 (296)
T ss_pred CCCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHH
Confidence 56799999987433221 122222222345555444568999999999644321 1111111347899999999999999
Q ss_pred HHHHHHHHHH----HcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 320 IDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 320 ~~~~~~~~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
.++.++++.+ .+.+.++.|+|+||.. ... .....+++.+.++.++++.||++..+.+|...|+|+..+
T Consensus 162 ~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~--~~~------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~ 233 (296)
T PRK13236 162 YAANNIARGILKYAHTGGVRLGGLICNSRN--VDR------EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEY 233 (296)
T ss_pred HHHHHHHHHHHHHhhCCCceeEEEEecCCC--Ccc------hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhc
Confidence 8887554433 3446788999999832 111 113568888999988899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010156 396 DPCGEVANTFQDLGVCVVQQCAKIRQQVSTA 426 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~~~~~~~~~~~ 426 (516)
.|+++++++|.++++++.++... ..|++
T Consensus 234 ~p~s~~a~~y~~La~ell~~~~~---~~p~~ 261 (296)
T PRK13236 234 APDSNQGNEYRALAKKIINNDNL---TIPTP 261 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCC---CCCCC
Confidence 99999999999999999876533 34544
No 8
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.3e-31 Score=241.40 Aligned_cols=232 Identities=21% Similarity=0.287 Sum_probs=181.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc--------CCCCC-ceeeecc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM--------NPEKR-TIIPTEY 242 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~--------~~~~~-~i~~~~~ 242 (516)
|+++|.|+||||||||||+++||+.+||++|+||++||+|..--+++..+|.++++... ....+ .+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 57899999999999999999999999999999999999999888899999999874321 11222 3344557
Q ss_pred CCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 322 (516)
+||.++|+....+-. .+..+.....++++.+ .+|||||+|||.|+...... ++..+|.+++|++|+..|++++
T Consensus 81 ~nL~lLPAsQtrdKd-alt~E~v~~vv~eL~~----~~fDyIi~DsPAGIE~G~~~--A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKD-ALTPEGVKKVVNELKA----MDFDYIIIDSPAGIEQGFKN--AVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCcc-cCCHHHHHHHHHHHHh----cCCCEEEecCcchHHHHHHh--hhhccceEEEEcCCCccccccc
Confidence 899999977544332 2233344455555543 68999999999998754443 3678899999999999999999
Q ss_pred HHHHHHHHcCC----CC---EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 323 AKGVRMFSKLK----VP---CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 323 ~~~~~~l~~~~----~~---~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
.|.+..++..+ .. ...+++||+++..-.+- .--..+++.+.+.+++++.||.+..+-.|.+.|.|+...
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~G----eMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~ 229 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRG----EMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILD 229 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccC----CcccHHHHHHHhCCceEEeecCchhhheecCCCCCeEeC
Confidence 99999887643 22 36889999765431110 112578999999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~ 415 (516)
+.+.++++|+++|+.|..+
T Consensus 230 -~~~~a~~Ay~d~arRllGe 248 (272)
T COG2894 230 -DNSDAGKAYRDIARRLLGE 248 (272)
T ss_pred -CCchHHHHHHHHHHHHhCC
Confidence 4669999999999988743
No 9
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=7.3e-31 Score=260.48 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=168.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCccc--ccc---c----CCCCCceeeec
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE---M----NPEKRTIIPTE 241 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~~~~~~~l~~~~~--~~~---~----~~~~~~i~~~~ 241 (516)
|+++|+|+ +||||||||+|+|||++||+ .|+|||+||+|+|++++..++|.... +.+ . ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 57899999 89999999999999999997 59999999999999887766654321 111 0 11123345556
Q ss_pred cCCceEEcCCCCCCccccc-CCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhc------CCCeEEEEeCC
Q 010156 242 YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------PLTAAVIVTTP 314 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~------~~d~viiV~~p 314 (516)
.+|++++|++......... +.......+.+.++.+. ++||||||||++.+. .. .+. ++|.+++|+.|
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~---~~--al~~~~~~~aad~viIp~~p 153 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVV---CG--GFAMPIRDGKAQEVYIVASG 153 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCcee---ec--cccccchhccCceEEEeccc
Confidence 7899999987543221110 11111112444444444 789999999954322 11 122 68999999999
Q ss_pred CcchHHHHHHHHHHHH----cCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCC
Q 010156 315 QKLAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (516)
Q Consensus 315 ~~~s~~~~~~~~~~l~----~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (516)
+..++.++.++++.+. +.++++.|+|+|+... . ..++..+++.+.++.+++..||++..+.+|...|+
T Consensus 154 ~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~--~------~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~ 225 (275)
T PRK13233 154 EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV--D------GELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKK 225 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--C------cHHHHHHHHHHHcCCceeeecCcchHHHHHHHcCC
Confidence 9999999998876663 4567889999997321 1 11246788888999888899999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHH
Q 010156 391 PEVAADPCGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 391 pl~~~~p~s~~~~~~~~La~~i~~~ 415 (516)
|++++.|+++++++|.+++++|.++
T Consensus 226 pv~~~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 226 TVVEFDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999764
No 10
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=4.1e-31 Score=257.91 Aligned_cols=234 Identities=19% Similarity=0.247 Sum_probs=169.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc--------ccCCCCCceeeeccCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 244 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~--------~~~~~~~~i~~~~~~~ 244 (516)
|++|+|+|+||||||||+|+|||+.||++|+||++||+|+|++ ++..+|.+.... ......+.+.. ..+|
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL-LRLHFGMDWSVRDGWARALLNGEPWAAAAYR-SSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch-HHHHhCCCCccCCcHHHHHhcCCChHHhHhh-cCCC
Confidence 5799999999999999999999999999999999999999974 555555433211 00111122222 3478
Q ss_pred ceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
++++|.+.................++++++.+.+..||||||||||+.+.....+ +.++|.+++|+.|+..++..+.+
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976432211111111123456677766654457999999999988765544 56889999999999999998884
Q ss_pred -HHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCC-eEEecCCChhHhhcccCCCceEEeCCCCHH
Q 010156 325 -GVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (516)
Q Consensus 325 -~~~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~ 401 (516)
+.++++..+.+ ..++|+|++..... ..++..+.+.+.+|.+ +.+.||++..+.++...|+|+.++.|++++
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~~~------~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~ 230 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPARQ------LSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQA 230 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcchh------hHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHH
Confidence 44555533222 37899999653321 1234456677778876 457799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010156 402 ANTFQDLGVCVVQQC 416 (516)
Q Consensus 402 ~~~~~~La~~i~~~~ 416 (516)
+++|++|+++|++++
T Consensus 231 ~~~~~~la~~~l~~~ 245 (246)
T TIGR03371 231 AHDIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 11
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.97 E-value=4.3e-30 Score=254.34 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=173.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc----c----ccCCCCCceeee-cc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTIIPT-EY 242 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~----~----~~~~~~~~i~~~-~~ 242 (516)
|+|+|+|+|+||||||||+|+|||++||++|+||++||+|+++++++.++|.+... . ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 57999999999999999999999999999999999999999988888888865321 1 111112223322 35
Q ss_pred CCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 322 (516)
+|++++|.+.... ...+. ...+.++++.+++..||||||||||+++...... +..+|.+++|++|+..++..+
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7999999875332 11111 1234555555443579999999999998765544 568899999999999999999
Q ss_pred HHHHHHHHcC-------CCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEE
Q 010156 323 AKGVRMFSKL-------KVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (516)
Q Consensus 323 ~~~~~~l~~~-------~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~ 394 (516)
.++++.+... +.+ ..++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~- 228 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI- 228 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhh----cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-
Confidence 9999987632 112 2588999965432110 01124678888899999999999999999999999998
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 010156 395 ADPCGEVANTFQDLGVCVVQ 414 (516)
Q Consensus 395 ~~p~s~~~~~~~~La~~i~~ 414 (516)
+.|+++.+++|++|+++|.+
T Consensus 229 ~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 229 LDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred eCCCCHHHHHHHHHHHHHhC
Confidence 67889999999999998764
No 12
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.97 E-value=4.5e-30 Score=249.11 Aligned_cols=232 Identities=27% Similarity=0.327 Sum_probs=182.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHH-HHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc-------cccCCCCCceeeeccC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-------LEMNPEKRTIIPTEYL 243 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nL-A~~La~~G~rVllID~D~~~~~~~~~l~~~~~~-------~~~~~~~~~i~~~~~~ 243 (516)
++++|+|+|+||||||||+|+|| |..++.+|++|++||+|+..++++.++|..... .+.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 46899999999999999999999 555556788889999999999999999987642 2233445666666668
Q ss_pred CceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
|+++||++....+...+........++++. ..|||||||||+|++...+.. +..+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887766665555555555555554 678999999999998766554 4566999999999999999999
Q ss_pred HHHHHHHcCCCCEEE--EEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHH
Q 010156 324 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (516)
Q Consensus 324 ~~~~~l~~~~~~~~g--vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~ 401 (516)
.+++.+.+.+....+ +|+||+........ ......+..++ .+.+..+|+++.+.++...|.|+..+.|++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~----~~~~~~~~~~~--~~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~a 227 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVD----VAALLIQVVKQ--VPVLQVIPFDPEVRRALAEGKPIVLYSPNSKA 227 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhH----HHHHHHHHHHh--CCceeEeccChHHHHHhhcCCcEEEeCCCCHH
Confidence 999999999998888 99999863222110 00122233333 34778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010156 402 ANTFQDLGVCVVQQC 416 (516)
Q Consensus 402 ~~~~~~La~~i~~~~ 416 (516)
++++.++|..+.+..
T Consensus 228 s~ai~~lA~~l~~~~ 242 (262)
T COG0455 228 SQAIKELAAKLAGLP 242 (262)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988644
No 13
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.97 E-value=1.3e-29 Score=252.02 Aligned_cols=224 Identities=20% Similarity=0.145 Sum_probs=165.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-ccc----------ccCCCCCceeeeccCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL----------EMNPEKRTIIPTEYLG 244 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~-~~~----------~~~~~~~~i~~~~~~~ 244 (516)
|+|+ +||||||||+|+|||++||++|+|||+||+|||++.+..+.+... .+. ......+.+.+ ..+|
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~-~~~~ 80 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYK-GYGG 80 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEe-CCCC
Confidence 8888 599999999999999999999999999999999987766544321 111 01112334443 3679
Q ss_pred ceEEcCCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 010156 245 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (516)
Q Consensus 245 l~vl~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 322 (516)
++++|++........ .........++.+ ... ++||||||||+++.....+ ...+.++|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHHH
Confidence 999998865432221 1111112233333 222 4799999999887543222 122456899999999999999999
Q ss_pred HHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCC
Q 010156 323 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 398 (516)
Q Consensus 323 ~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~ 398 (516)
.++++.++.. +.+..|+|+||+.. +...+++.+.++.+++..||++..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 225 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK-----------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES 225 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc-----------hhHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCC
Confidence 9998877654 45688999999641 13466778889999999999999999999999999999999
Q ss_pred CH----HHHHHHHHHHHHHHHH
Q 010156 399 GE----VANTFQDLGVCVVQQC 416 (516)
Q Consensus 399 s~----~~~~~~~La~~i~~~~ 416 (516)
++ ++++|.+||++|.++.
T Consensus 226 s~~~~~~a~~y~~La~ell~~~ 247 (290)
T CHL00072 226 EPSLNYVCDYYLNIADQLLSQP 247 (290)
T ss_pred CcchhHHHHHHHHHHHHHHhCC
Confidence 98 6899999999997653
No 14
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.97 E-value=5.7e-30 Score=251.91 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=174.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc----cc----cCCCCCceee-eccC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE----MNPEKRTIIP-TEYL 243 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~----~~----~~~~~~~i~~-~~~~ 243 (516)
+|+|+|+|+||||||||+|+|||..|++.|+||++||+|+++++++.++|.+... .+ .....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 4799999999999999999999999999999999999999988888888765321 00 0111122222 1346
Q ss_pred CceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
|++++|.+..... .... ...+.++++.+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 9999997753221 1111 123455555554 689999999999988654433 5678999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHH
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 403 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~ 403 (516)
++++.+++.+....++|+|++........ .....+++.+.++.++++.||++..+.+|...|+|+.++.+ +++++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~ 227 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKG----DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGK 227 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccc----cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHH
Confidence 99999998876678999999754321110 11136778888999999999999999999999999998765 89999
Q ss_pred HHHHHHHHHHH
Q 010156 404 TFQDLGVCVVQ 414 (516)
Q Consensus 404 ~~~~La~~i~~ 414 (516)
+|.+|+++|..
T Consensus 228 ~~~~La~~l~~ 238 (261)
T TIGR01968 228 AFENIARRILG 238 (261)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 15
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.97 E-value=6.6e-30 Score=252.96 Aligned_cols=234 Identities=19% Similarity=0.198 Sum_probs=167.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc------C--CCCCceeeecc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------N--PEKRTIIPTEY 242 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~~~------~--~~~~~i~~~~~ 242 (516)
||+|+|. +||||||||+|+|||.+||++|+||++||+|+|++++..+++.... +... . ...+.+ ....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVI-FEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhhe-eecC
Confidence 5799999 7999999999999999999999999999999999877666542211 1000 0 122333 3446
Q ss_pred CCceEEcCCCCCCcccccCC-cc-HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchH
Q 010156 243 LGVKLVSFGFSGQGRAIMRG-PM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~-~~-~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~ 319 (516)
+|++++|++........... .. ....++.+ ..+. ++|||||||||+......+ ......++|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEEL-GAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHhc-Cccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 79999998754322211111 11 11123332 3333 6899999999775421111 1111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
.++.++++.+.+. +.++.|+|.|+... ...++..+++.+.+|.++++.||++..+.+|...|+|+.++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~--------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~ 228 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRNT--------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEY 228 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCCC--------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEe
Confidence 9988887666543 56788899887321 12234677888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQCAK 418 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~~~ 418 (516)
.|+++++++|+++++++.++...
T Consensus 229 ~p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 229 DPESKQADEYRELARKIVENKLL 251 (270)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999876433
No 16
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.97 E-value=9.4e-30 Score=252.94 Aligned_cols=232 Identities=18% Similarity=0.149 Sum_probs=163.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-c---ccc-----cCCCCCceeeeccC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-R---LLE-----MNPEKRTIIPTEYL 243 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~-~---~~~-----~~~~~~~i~~~~~~ 243 (516)
|++|+|+ +||||||||+|+|||++||++|+|||+||+|||++++.++.+... . ... .....+.+.+ .++
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYE-GFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheee-CCC
Confidence 6799999 899999999999999999999999999999999987776643211 1 000 1122344444 468
Q ss_pred CceEEcCCCCCCcccccCCcc-H-HHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPM-V-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~-~-~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~ 320 (516)
|++++|++............. . ...++. +..+.+.+||||||||+++.....+ ....+.++|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 999999875432211100000 0 111222 1122224799999999775421111 11123468999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeC
Q 010156 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (516)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~ 396 (516)
++.++++.+.. .+.++.|++.|+.. .. ...+..+++++.+|.++++.||++..+.+|...|+|+.++.
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~-------~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGRS-VI-------DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEeccC-CC-------chhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 99888776653 35566778765311 10 01246788889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 010156 397 PCGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 397 p~s~~~~~~~~La~~i~~~ 415 (516)
|.++++++|.++++++.++
T Consensus 230 p~~~~a~~y~~La~ell~~ 248 (279)
T PRK13230 230 PDSEISNIFRELAEAIYEN 248 (279)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 17
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=4.4e-30 Score=256.52 Aligned_cols=232 Identities=17% Similarity=0.155 Sum_probs=167.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccc---------cCCCCCceeee
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE---------MNPEKRTIIPT 240 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~--~~~~---------~~~~~~~i~~~ 240 (516)
.||+|+|. +||||||||+++|||.+|++.|+|||+||+|+|++++..+++... .+.. ....++.+ .+
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ 80 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVM-KI 80 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHh-ee
Confidence 46899997 999999999999999999999999999999999998876654322 1111 11122233 35
Q ss_pred ccCCceEEcCCCCCCcccccCCccHHHHHH-HHHHhcc-cCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcc
Q 010156 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKL 317 (516)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~-~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~ 317 (516)
..+|+++||++...... ........++ ..++.+. .++||||||||+++.....+ ......++|.+++|++|+..
T Consensus 81 ~~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~ 157 (295)
T PRK13234 81 GYKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMM 157 (295)
T ss_pred cCCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHH
Confidence 56899999986433221 1111112222 2333221 26899999999544321111 00001278999999999999
Q ss_pred hHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceE
Q 010156 318 AFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 393 (516)
Q Consensus 318 s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~ 393 (516)
++.++.++++.+++. ++++.|+|+|+.+.. ..++..+++.+.+|.+++..||++..+.++...|+|++
T Consensus 158 Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~--------~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~ 229 (295)
T PRK13234 158 ALYAANNIAKGILKYANSGGVRLGGLICNERQTD--------RELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVI 229 (295)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCc--------hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceE
Confidence 999999998777653 466889999964321 12345778888899888889999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHH
Q 010156 394 AADPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 394 ~~~p~s~~~~~~~~La~~i~~~~ 416 (516)
++.|+++++++|.+|+++|.++.
T Consensus 230 ~~~p~s~aa~~y~~La~ell~~~ 252 (295)
T PRK13234 230 EYAPDSKQAGEYRALAEKIHANS 252 (295)
T ss_pred EECCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998664
No 18
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=249.95 Aligned_cols=229 Identities=19% Similarity=0.162 Sum_probs=164.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC-ccccc----------ccCCCCCceeee
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLL----------EMNPEKRTIIPT 240 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~-~~~~~----------~~~~~~~~i~~~ 240 (516)
|+|+|+|. +||||||||+|+|||++||++|+|||+||+|||++.+.++.+. ...+. ......+.+. .
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~-~ 78 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY-E 78 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHhee-e
Confidence 57899998 7999999999999999999999999999999998765544221 11110 0111223333 3
Q ss_pred ccCCceEEcCCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 010156 241 EYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (516)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s 318 (516)
..+|++++|++........ .........++++ .+ +++||||||||+++.....+ ...+.++|.+++|+.|+..+
T Consensus 79 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~s 154 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFDS 154 (270)
T ss_pred CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchhh
Confidence 4689999998764332211 1111111223331 12 36899999999876542221 12245789999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEE
Q 010156 319 FIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (516)
Q Consensus 319 ~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~ 394 (516)
+.++.++++.++. .++++.|+|+||+.. ....+++.+.+|.+++..||++..+.+|...|+|+.+
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~ 223 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFE 223 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----------HHHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhh
Confidence 9999988887653 356678999999541 1346778888999999999999999999999999999
Q ss_pred eCCCC----HHHHHHHHHHHHHHHHHH
Q 010156 395 ADPCG----EVANTFQDLGVCVVQQCA 417 (516)
Q Consensus 395 ~~p~s----~~~~~~~~La~~i~~~~~ 417 (516)
+.|++ +++++|+++++++.++..
T Consensus 224 ~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 224 MEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred hCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 98864 488999999999876543
No 19
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.6e-29 Score=245.85 Aligned_cols=205 Identities=42% Similarity=0.632 Sum_probs=168.2
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccccC---CCCCceeeeccCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMN---PEKRTIIPTEYLG 244 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~~~~---~~~~~i~~~~~~~ 244 (516)
.+..++|+|+|+|||+||||+|+|||.+||+.|+||++||+|.++|+++.+|+.++. +.... .....+......+
T Consensus 54 ~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 133 (265)
T COG0489 54 KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKV 133 (265)
T ss_pred cccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccce
Confidence 356789999999999999999999999999999999999999999999999998652 11111 1222222233456
Q ss_pred ceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
+++++.+. ....|++++....+.+++..++|+.||||||||||++++......+.. .|.+++|++|+.....++++
T Consensus 134 lsi~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~-~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 134 LSILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI-PDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EEEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc-CCeEEEEeCCccchHHHHHH
Confidence 66666554 667788999999999999999998899999999999999888776543 46999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhh
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA 384 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~ 384 (516)
+++++++.+.+++|+|.||.++.+.... .+..+.+.++++ ++++.+|.+..+.+
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhh
Confidence 9999999999999999999887764221 356778888888 89999998876654
No 20
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.97 E-value=7.7e-30 Score=264.60 Aligned_cols=239 Identities=21% Similarity=0.199 Sum_probs=171.3
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------c-------ccCCCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 235 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~--------~-------~~~~~~~ 235 (516)
..+++|+|+|.||||||||+|+|||..||++|+|||+||+|||+ ++..++|..... . ......+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~ 197 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHH
Confidence 35789999999999999999999999999999999999999997 455566643211 0 0112234
Q ss_pred ceeeeccCCceEEcCCCCCCcccc----------cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCC
Q 010156 236 TIIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 305 (516)
Q Consensus 236 ~i~~~~~~~l~vl~~~~~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~ 305 (516)
.+.++.++|++++|++......+. .........|++.++.+. ++||||||||||+++.... ..+.++
T Consensus 198 ~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~--~al~aA 274 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTL--SGLCAA 274 (405)
T ss_pred heeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHH--HHHHHc
Confidence 566777899999997753222111 011112234666666665 7899999999999986554 447789
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHH-------HcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-
Q 010156 306 TAAVIVTTPQKLAFIDVAKGVRMF-------SKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 373 (516)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l-------~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l- 373 (516)
|.+++|+.|+..++.++.++++++ ++. +...+++|+||++... ..+++..+.+.+.+|..++
T Consensus 275 d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~------~~~~~~~~~l~~~~~~~vl~ 348 (405)
T PRK13869 275 TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD------APQTKVAALLRNMFEDHVLT 348 (405)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC------cHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999888887632 222 2346799999965332 1233567788888886555
Q ss_pred EecCCChhHhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 010156 374 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 419 (516)
Q Consensus 374 ~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~~La~~i~~~~~~~ 419 (516)
..||.+..+.+|...|+|++++.|....++.|....+.+.+-..++
T Consensus 349 ~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~~~~~~~~~ei 394 (405)
T PRK13869 349 NPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEI 394 (405)
T ss_pred CcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999988665566655555554444444
No 21
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.96 E-value=3.6e-29 Score=246.83 Aligned_cols=234 Identities=20% Similarity=0.191 Sum_probs=168.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-c---ccc--CCCCCceeeeccCCc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-L---LEM--NPEKRTIIPTEYLGV 245 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~-~---~~~--~~~~~~i~~~~~~~l 245 (516)
.||+|+|. +||||||||+|+|||++||+.| |||+||+|+|++.+..+++.... + ... ....+.+....++|+
T Consensus 1 ~~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (264)
T PRK13231 1 VMKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGI 78 (264)
T ss_pred CceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCe
Confidence 36899999 6999999999999999999999 99999999999777655543211 1 100 011122334457899
Q ss_pred eEEcCCCCCCcccc-cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 246 KLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 246 ~vl~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~-~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
+++|++........ .........+.+.+..+. ++||||||||++......+. .....++|.+++|++|+..++.++.
T Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~ 157 (264)
T PRK13231 79 LCVESGGPEPGVGCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAAN 157 (264)
T ss_pred EEEEcCCCCCCCCCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHH
Confidence 99997643221110 001001111222333333 78999999997754211111 0011378999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHH
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 403 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~ 403 (516)
++++.++..+.+..++|.|+.... . ..+..+++.+.++.+++..||++..+.+|...|+|+.++.|++++++
T Consensus 158 ~~~~~i~~~~~~~~~vv~~~~~~~--~------~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~ 229 (264)
T PRK13231 158 NIARGIKKLKGKLGGIICNCRGID--N------EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQAS 229 (264)
T ss_pred HHHHHHHHcCCcceEEEEcCCCCc--c------HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHHH
Confidence 999999887766778888874311 1 22467888888998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010156 404 TFQDLGVCVVQQC 416 (516)
Q Consensus 404 ~~~~La~~i~~~~ 416 (516)
+|.+|+++|.++.
T Consensus 230 ~~~~la~el~~~~ 242 (264)
T PRK13231 230 VYRKLANNIMNNT 242 (264)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999764
No 22
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.96 E-value=6.9e-29 Score=246.33 Aligned_cols=230 Identities=21% Similarity=0.230 Sum_probs=164.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------cccc----CCCCCceeeeccC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM----NPEKRTIIPTEYL 243 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~----~~~~~~i~~~~~~ 243 (516)
++|+|+ +||||||||+|+|||++||++|+||++||+|+|+++...+++.... +... ....+ +......
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELED-VIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHH-eeeeCCC
Confidence 479998 7999999999999999999999999999999999887766553222 1110 12223 3344567
Q ss_pred CceEEcCCCCCCcccccCCccH---HHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPMV---SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~ 319 (516)
|++++|++........ .+... ...++.+ ..+. ++||||||||++......+ ......++|.+++|++|+..++
T Consensus 79 ~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl 155 (275)
T TIGR01287 79 GIRCVESGGPEPGVGC-AGRGVITAINLLEEL-GAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 155 (275)
T ss_pred CEEEEeCCCCCccCCC-ccchhhhHHHHHHHh-hhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHH
Confidence 9999997643322110 11111 1233332 2333 6899999999765421111 1111236899999999999999
Q ss_pred HHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 320 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 320 ~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
.++.++++.+.+ .+.++.++|.|+... . ...+..+++.+.++.++++.||++..+.+|...|+|+.++
T Consensus 156 ~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~--~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~ 227 (275)
T TIGR01287 156 YAANNICKGILKYAKSGGVRLGGLICNSRNV--D------DEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEY 227 (275)
T ss_pred HHHHHHHHHHHHHHhcCCCeeeEEEEcCCCC--c------hHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEe
Confidence 998887765433 356678888887321 1 1224567888889988889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~ 416 (516)
.|+++++++|++++++|.++.
T Consensus 228 ~p~s~~a~~~~~la~ell~~~ 248 (275)
T TIGR01287 228 DPESEQANEYRELAKKIYENT 248 (275)
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 23
>PRK10037 cell division protein; Provisional
Probab=99.96 E-value=2.5e-29 Score=245.78 Aligned_cols=228 Identities=14% Similarity=0.162 Sum_probs=155.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--------ccccCCCCCceeeeccCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--------~~~~~~~~~~i~~~~~~~ 244 (516)
|++|+|.|.||||||||+|+|||++||++|+|||+||+|+|++ +...+|.... +.......+.+.+. .+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~-~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNL-LRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhh-HHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 5799999999999999999999999999999999999999974 4444444321 11111222333333 479
Q ss_pred ceEEcCCCCCCc-ccccCC-ccHHHHHHHHHHhccc-CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 010156 245 VKLVSFGFSGQG-RAIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~-~~~~~~l~~l~~~~~~-~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
+++||++..... ...... ......+...++.+.. +.||||||||||+.+..... .+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~--al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQ--LLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHH--HHHhCCEEEEEcCcCHHHH--
Confidence 999997521111 000000 0011234455554421 58999999999998865443 4678999999999986542
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHh---CCCeEE-ecCCChhHhhcccCCCceEEeCC
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHLF-DLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~-~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
++..+......+.+++|++.... ...+++.+.+ +.+++. .||.+..+.+|...|+|+.++.|
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~~----------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~ 220 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIGS----------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRS 220 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCccc----------HHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCC
Confidence 33333322223567889864211 2334444433 555553 69999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q 010156 398 CGEVANTFQDLGVCVVQQCAKIR 420 (516)
Q Consensus 398 ~s~~~~~~~~La~~i~~~~~~~~ 420 (516)
+++++++|+.|++++.+.+..++
T Consensus 221 ~s~aa~~~~~l~~el~~~~~~~~ 243 (250)
T PRK10037 221 DSLAAEEILTLANWCLLHYSGLK 243 (250)
T ss_pred cCHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999887764
No 24
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.96 E-value=5.8e-29 Score=245.96 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=162.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc-ccc---c-------ccCCCCCceeeeccC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRL---L-------EMNPEKRTIIPTEYL 243 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~-~~~---~-------~~~~~~~~i~~~~~~ 243 (516)
+|+|. +||||||||+|+|||++||++|+|||+||+|+|++.+..+.+.. ..+ . ......+.+ ....+
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~~ 79 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVI-YTGYG 79 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHee-EeCCC
Confidence 68888 89999999999999999999999999999999987665443321 111 1 011122333 34468
Q ss_pred CceEEcCCCCCCccc--ccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 010156 244 GVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
|+++||++....... ..........++++ .+ .++||||||||+++....... ..+.++|.+++|+.|+..++.+
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~~ 155 (268)
T TIGR01281 80 GVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALFA 155 (268)
T ss_pred CeEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHHH
Confidence 999999775432211 11111112233332 12 368999999998765422211 1245789999999999999999
Q ss_pred HHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCC
Q 010156 322 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 322 ~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
+.++++.+.+ .++++.|+|+||+... +..+++.+.++.+++..||++..+.+|...|+|++++.|
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~~ 224 (268)
T TIGR01281 156 ANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEMEE 224 (268)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhCc
Confidence 9888877664 3577889999996532 246677888999999999999999999999999999987
Q ss_pred CC----HHHHHHHHHHHHHHHHHH
Q 010156 398 CG----EVANTFQDLGVCVVQQCA 417 (516)
Q Consensus 398 ~s----~~~~~~~~La~~i~~~~~ 417 (516)
++ ..+++|++|++++.++..
T Consensus 225 ~~~~~~~~a~~~~~la~el~~~~~ 248 (268)
T TIGR01281 225 SGPELAAVTQEYLRMAEYLLAGPE 248 (268)
T ss_pred ccccchHHHHHHHHHHHHHHhcCC
Confidence 65 467899999999887543
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.96 E-value=2.4e-28 Score=241.40 Aligned_cols=224 Identities=21% Similarity=0.185 Sum_probs=160.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC-ccccc----------ccCCCCCceeeeccC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLL----------EMNPEKRTIIPTEYL 243 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~-~~~~~----------~~~~~~~~i~~~~~~ 243 (516)
+|+|. +||||||||+|+|||++||++|+|||+||+|||++....+.+. ...+. ......+.+ ...++
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~~ 79 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGYG 79 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheE-EECCC
Confidence 68888 6999999999999999999999999999999998654433221 11111 111223344 34568
Q ss_pred CceEEcCCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 010156 244 GVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
|++++|++........ .........++++ . . .++||||||||+++....... ..+.++|.+++|+.|+..++.+
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~~-~al~~aD~vlip~~p~~~~l~~ 155 (267)
T cd02032 80 GVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGFA-APLNYADYALIVTDNDFDSIFA 155 (267)
T ss_pred CcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccch-hhhhhcCEEEEEecCCcccHHH
Confidence 9999998754322111 1011111233332 1 2 268999999998876532211 1255789999999999999999
Q ss_pred HHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCC
Q 010156 322 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 322 ~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
+.++++.+++ .++++.|+|+||++.. ...+++.+.++.+++..||++..+.+|...|+|++++.|
T Consensus 156 ~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~~ 224 (267)
T cd02032 156 ANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMDE 224 (267)
T ss_pred HHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhCc
Confidence 9988877753 3567889999996521 245677788999999999999999999999999999998
Q ss_pred CCHH----HHHHHHHHHHHHHH
Q 010156 398 CGEV----ANTFQDLGVCVVQQ 415 (516)
Q Consensus 398 ~s~~----~~~~~~La~~i~~~ 415 (516)
.++. +++|.+|+++|.++
T Consensus 225 ~~~~a~e~a~~y~~La~~il~~ 246 (267)
T cd02032 225 SDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred ccccccHHHHHHHHHHHHHHhc
Confidence 8765 67899999888753
No 26
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=7.7e-28 Score=221.29 Aligned_cols=167 Identities=57% Similarity=0.993 Sum_probs=133.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
+|+|+|+|||+||||+|+|||..||+.|+||++||+|+|++++++++
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997654330
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (516)
+++.....++.+++.+.+..||||||||||+.++.......+..+|.+++|++|+..++.++.++++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01111234555555444479999999999998876554332357899999999999999999999999999999
Q ss_pred CEEEEEEecccccC--CCccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 335 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 335 ~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
++.|+|+||+.... ..+....+.....+++.+.++.++++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 99999999987532 12222234456789999999999999999874
No 27
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.96 E-value=5.1e-28 Score=250.98 Aligned_cols=239 Identities=22% Similarity=0.229 Sum_probs=168.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc-----------c----ccCCCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-----------L----EMNPEKR 235 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~-----------~----~~~~~~~ 235 (516)
..+++|+|+|.||||||||+|+|||.+||+.|+|||+||+|+|+ ++..++|..... . ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 45689999999999999999999999999999999999999997 455566643211 0 0112234
Q ss_pred ceeeeccCCceEEcCCCCCCcccc------cC----CccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCC
Q 010156 236 TIIPTEYLGVKLVSFGFSGQGRAI------MR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 305 (516)
Q Consensus 236 ~i~~~~~~~l~vl~~~~~~~~~~~------~~----~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~ 305 (516)
.+.++..+|++++|++......+. .. .......+...+..+. +.||||||||||+++.... ..+.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~--~al~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTL--SALCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHH--HHHHHc
Confidence 555666789999997643211100 00 0111234566666554 7999999999999886544 446789
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-------HHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-
Q 010156 306 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 373 (516)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~-------l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l- 373 (516)
|.+++|+.|+..++..+..+++. +++. +...+++|+|++..... ..++..+.+.+.+|..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~------~~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDG------PQAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCc------cHHHHHHHHHHHhcccccc
Confidence 99999999999888776655443 3322 24467999999653321 223556777788887666
Q ss_pred EecCCChhHhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 010156 374 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 419 (516)
Q Consensus 374 ~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~~La~~i~~~~~~~ 419 (516)
..||.+..+.+|...|.|++++.|++..+++|.+..+++.+-..++
T Consensus 332 ~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~~~~ei 377 (387)
T TIGR03453 332 NPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDAVNAEI 377 (387)
T ss_pred ccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998765666666665555544333
No 28
>PHA02518 ParA-like protein; Provisional
Probab=99.96 E-value=8.8e-28 Score=228.78 Aligned_cols=204 Identities=22% Similarity=0.261 Sum_probs=149.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (516)
++|+|+|.||||||||+|+|||.+|+++|+||++||+|+|++...++-... . +..+++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~--------~----------~~~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEARE--------E----------GEPLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcc--------c----------CCCCCchhh-
Confidence 489999999999999999999999999999999999999997655431100 0 001122100
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-
Q 010156 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 332 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~- 332 (516)
.+ ..+.+.+..+. ..||||||||||+.+...... +.++|.+++|+.|+..++..+.++++.++..
T Consensus 62 -------~~----~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MG----KSIRADLPKVA-SGYDYVVVDGAPQDSELARAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------cc----HHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 01 12233333333 789999999999987665444 5688999999999999999888888777643
Q ss_pred ----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe-cCCChhHhhcccCCCceEEeCCCCHHHHHHHH
Q 010156 333 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-LPIRPTLSASGDSGMPEVAADPCGEVANTFQD 407 (516)
Q Consensus 333 ----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~-IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~~ 407 (516)
+.+..++|.|+....... . ....+..+.++.+++.. ++.+..+.++...|+|+.++.|.++++++|.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~~------~-~~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~~~~ 200 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQL------Y-REARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQ 200 (211)
T ss_pred hhCCCCceEEEEEeccCCcchH------H-HHHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHHHHH
Confidence 466788898985322111 1 12334445567777755 55557899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010156 408 LGVCVVQQCA 417 (516)
Q Consensus 408 La~~i~~~~~ 417 (516)
|+++|.+++.
T Consensus 201 l~~ei~~~~~ 210 (211)
T PHA02518 201 LVKELFRGIS 210 (211)
T ss_pred HHHHHHHHhc
Confidence 9999987753
No 29
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.95 E-value=3.7e-28 Score=239.04 Aligned_cols=238 Identities=23% Similarity=0.337 Sum_probs=170.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCCCCCCccc----c---cccC-CCCCceeee-c
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR----L---LEMN-PEKRTIIPT-E 241 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~~~~~~~~l~~~~~----~---~~~~-~~~~~i~~~-~ 241 (516)
+|++|+|+|.||||||||+|+|||.+|| ..|+|||+||+|||++ +..+++.... . .... ...+..... .
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS-LTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVV 79 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch-hhHhcCCCcccchhHHHHHhcccccccchhcccC
Confidence 5789999999999999999999999999 5679999999999964 4455554332 1 1100 101111111 4
Q ss_pred cCCceEEcCCCCCCc-ccc-cCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 010156 242 YLGVKLVSFGFSGQG-RAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~-~~~-~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
.++++++|+...... ... .........++.++..+. ++||||||||||+.+....+ .+.++|.+++++.|+..++
T Consensus 80 ~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~l~~n--al~asd~vlIP~~~~~~~~ 156 (259)
T COG1192 80 IEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGVLTLN--ALAAADHVLIPVQPEFLDL 156 (259)
T ss_pred CCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhHHHHH--HHHHcCeeEEecCchHHHH
Confidence 578999997644321 111 001222344555554333 79999999999999755544 4678899999999999999
Q ss_pred HHHHHHHHHHHcCC------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCe-EEecCCChhHhhcccCCCce
Q 010156 320 IDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-LFDLPIRPTLSASGDSGMPE 392 (516)
Q Consensus 320 ~~~~~~~~~l~~~~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-l~~IP~~~~i~~a~~~g~pl 392 (516)
..+..+++.+.... ....++++|+...... ...+..+.+.+.++.++ ...||.+..++++...|.|+
T Consensus 157 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~~ 230 (259)
T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTK------LADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPL 230 (259)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcc------hHHHHHHHHHHHhccccccccCcccccHHhHHHcCCCc
Confidence 99888777665432 2568899999554321 22345667777776443 45699999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 010156 393 VAADPCGEVANTFQDLGVCVVQQCAKI 419 (516)
Q Consensus 393 ~~~~p~s~~~~~~~~La~~i~~~~~~~ 419 (516)
..++++++.+++|.+++.++.+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 231 YEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred eecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999887654
No 30
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.95 E-value=6.2e-28 Score=229.59 Aligned_cols=229 Identities=20% Similarity=0.211 Sum_probs=167.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc--------ccCCCCCceeeeccCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 244 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~--------~~~~~~~~i~~~~~~~ 244 (516)
|++|+|.|.||||||||+|+|||..|++.|++|++||+||++ .+...||...... ......+.. ....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~-~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAA-YRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHh-hccCCC
Confidence 789999999999999999999999999999999999999986 7777777653311 111111222 223579
Q ss_pred ceEEcCCCCCCcccc-c--CCccHHHHHHHHHHhcc-cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 010156 245 VKLVSFGFSGQGRAI-M--RGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 245 l~vl~~~~~~~~~~~-~--~~~~~~~~l~~l~~~~~-~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 320 (516)
++++|.|........ + -.... ..+.+.+..+. ...||+|||||||+.+...... +..+|.+++|+.|+..+..
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~~-~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~~ 155 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQDP-QWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASHA 155 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcCH-HHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHHH
Confidence 999998865432211 1 01111 22333333332 4789999999999987655544 5568999999999999876
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCH
Q 010156 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGE 400 (516)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~ 400 (516)
.+.+. ... .-..+|+|+++... .++++...-+.+..+..+.+.|+.|+.+.||...++|+.+|+|.|.
T Consensus 156 ~L~q~-----~l~-~~~~~liNq~~~~s------~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~ 223 (243)
T PF06564_consen 156 RLHQR-----ALP-AGHRFLINQYDPAS------QLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQ 223 (243)
T ss_pred HHHHh-----ccc-CCcEEEEeccCccc------hHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccCH
Confidence 55431 111 12578999965443 3455667777777787677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010156 401 VANTFQDLGVCVVQQCAK 418 (516)
Q Consensus 401 ~~~~~~~La~~i~~~~~~ 418 (516)
++++|..||.+++..+..
T Consensus 224 Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 224 AAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999876643
No 31
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.95 E-value=2.7e-27 Score=244.01 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=163.7
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCCCCCCccc--------c----cc-cCCCCCc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENR--------L----LE-MNPEKRT 236 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~-D~~~~~~~~~l~~~~~--------~----~~-~~~~~~~ 236 (516)
.+++||+|+|.||||||||+|+|||++||++|+|||+||+ |||++.. .++|.... + .. .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt-~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTAS-MYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchh-hhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 4578999999999999999999999999999999999996 9999654 44554221 0 00 1122345
Q ss_pred eeeeccCCceEEcCCCCCCccc--c---c-CC---ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 010156 237 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (516)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~ 307 (516)
+.++.++|+++||++......+ . . .+ ......++..++.+. ++||||||||||+++..... .+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~n--al~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTIN--VVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHH--HHHHcCE
Confidence 5666779999999764321110 0 0 00 112345666666665 78999999999999866554 4678999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCC
Q 010156 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 378 (516)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~ 378 (516)
+++|+.|+..++.++.++++++... + .+.+.+++|+++..... ..+...+.+.+.||..++ ..||.
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-----~~~~~~~~l~~~~~~~vl~~~I~~ 334 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS-----QSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch-----HHHHHHHHHHHHhccccccccCcc
Confidence 9999999999998888777666542 1 13356899995432111 011245678888886555 45899
Q ss_pred ChhHhhcccCCCceEEeCCCC-H-------HHHHHHHHHHHHHHHH
Q 010156 379 RPTLSASGDSGMPEVAADPCG-E-------VANTFQDLGVCVVQQC 416 (516)
Q Consensus 379 ~~~i~~a~~~g~pl~~~~p~s-~-------~~~~~~~La~~i~~~~ 416 (516)
+..+.+|...+++++++.+.. . +.+.|..+.++|.+++
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~ 380 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRL 380 (388)
T ss_pred cchHhhhhhcCCCceeEccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998643 1 3444555555555443
No 32
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.95 E-value=1.5e-26 Score=214.43 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=143.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
+|+|+|+|||+||||+|+|||.+|+++|+||++||+|++++++..+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999987777665433210 00 0
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (516)
+.+++ . + |||||||||+.+...... +..+|.+++|+.|+..++..+.++++.++..+.
T Consensus 57 --------------~~~~~---~-~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL---A-G--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc---c-C--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00010 0 1 999999999987654433 567899999999999999999999999998888
Q ss_pred CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHHH
Q 010156 335 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTF 405 (516)
Q Consensus 335 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~ 405 (516)
+..++|+|++...... ..+..+++.+.++.+++..||++..+.++...|+|++++.|+++++++|
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 8899999997544321 1233577888889999999999999999999999999999999887654
No 33
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.95 E-value=7.4e-27 Score=240.26 Aligned_cols=235 Identities=19% Similarity=0.213 Sum_probs=163.6
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCCCCCCcccc------------cc-cCCCCCc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL------------LE-MNPEKRT 236 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~-D~~~~~~~~~l~~~~~~------------~~-~~~~~~~ 236 (516)
+.++||+|+|.||||||||+|+|||..||++|+|||+||+ |||++. ..++|..... .. .......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nl-t~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTA-SMYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCc-ccccCcCccccccccccHHHHHhCCCcchHhh
Confidence 3468999999999999999999999999999999999996 999964 4455543211 00 0112345
Q ss_pred eeeeccCCceEEcCCCCCCccc--c---c-CC---ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 010156 237 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (516)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~ 307 (516)
+.++.++|+++||++......+ . . .+ ......++..++.+. ++||||||||||+++..... ++.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~n--AL~AAd~ 259 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTIN--VVCAADV 259 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHH--HHHHhCE
Confidence 6667789999999874321110 0 0 00 112345666666665 78999999999999965554 4778899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCC
Q 010156 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 378 (516)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~ 378 (516)
+++|+.|+..++.++.++++++.+. + .+.+.+++||++... .. ..+...+.+.+.||..++ ..||.
T Consensus 260 vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~-~~----~~~~i~~~l~~~~g~~vl~~~I~~ 334 (387)
T PHA02519 260 IVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTV-GN----QSRWMEEQIRNTWGSMVLRQVVRV 334 (387)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCC-ch----HHHHHHHHHHHHhccccccccCcC
Confidence 9999999999998877766655321 1 224568999954321 11 112345778888987655 45888
Q ss_pred ChhHhhcccCCCceEEeCCCC-H-------HHHHHHHHHHHHHH
Q 010156 379 RPTLSASGDSGMPEVAADPCG-E-------VANTFQDLGVCVVQ 414 (516)
Q Consensus 379 ~~~i~~a~~~g~pl~~~~p~s-~-------~~~~~~~La~~i~~ 414 (516)
...+.+|...+++++++.+.+ . +.+.+..+..+|.+
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~ 378 (387)
T PHA02519 335 TDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFN 378 (387)
T ss_pred cchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998665 2 34445555555544
No 34
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.95 E-value=2.8e-26 Score=232.56 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=166.9
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--c--cc----CCCC----Cce
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--L--EM----NPEK----RTI 237 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~--~--~~----~~~~----~~i 237 (516)
...+++|+|+|+||||||||+|+|||.+|+++|+||++||+|+|++++..+||.+... . .. .... ...
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDA 169 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHh
Confidence 3467999999999999999999999999999999999999999999988888765321 0 00 0000 011
Q ss_pred eeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 010156 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (516)
Q Consensus 238 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~ 317 (516)
.+. .+|+++++.+.... ... ....++++++.+. +.||||||||||+.+...... +..+|.+++|+.++..
T Consensus 170 ~~~-~~~l~vl~~~~~~~--~~~----~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~~ 239 (322)
T TIGR03815 170 LPR-RGGLSVLSWGRAVG--AAL----PPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADVR 239 (322)
T ss_pred CCC-cCCeEEEecCCCCc--CCC----CHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcHH
Confidence 222 46899999775431 111 2344566666554 789999999999988664443 5678999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCC
Q 010156 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (516)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p 397 (516)
++..+.++++.+...+. .+++|+|+... . ....+++++.+|.+++..||++..+.++.+.|+|+. ..|
T Consensus 240 sl~~a~r~l~~l~~~~~-~~~lVv~~~~~---~-------~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~ 307 (322)
T TIGR03815 240 AVAAAARVCPELGRRNP-DLRLVVRGPAP---A-------GLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASR 307 (322)
T ss_pred HHHHHHHHHHHHhhhCC-CeEEEEeCCCC---C-------CCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCC
Confidence 99999999999987654 35777776321 1 124678899999999999999999999999999988 677
Q ss_pred CCHHHHHHHHHHH
Q 010156 398 CGEVANTFQDLGV 410 (516)
Q Consensus 398 ~s~~~~~~~~La~ 410 (516)
.++.++++..+.+
T Consensus 308 ~~~~~~~~~~~l~ 320 (322)
T TIGR03815 308 RRPLGRAAAEVLD 320 (322)
T ss_pred CCHHHHHHHHHHh
Confidence 8888888777654
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.94 E-value=3e-26 Score=218.52 Aligned_cols=193 Identities=21% Similarity=0.180 Sum_probs=135.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---------ccCCCCCceeeecc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---------EMNPEKRTIIPTEY 242 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~---------~~~~~~~~i~~~~~ 242 (516)
++|+|+ +||||||||+++|||.+||+.|+|||+||+|+|++++..+++.... +. ......+ +.....
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELED-VIFEGF 78 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhH-eeEeCC
Confidence 479999 5999999999999999999999999999999999877766554321 11 1112223 334457
Q ss_pred CCceEEcCCCCCCcccccCCcc--HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhc--CCCeEEEEeCCCcch
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLA 318 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~--~~d~viiV~~p~~~s 318 (516)
+|++++|++............. ....++ .+..+. ++||||||||++......+ ...+. ++|.+++|++|+..+
T Consensus 79 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~s 155 (212)
T cd02117 79 GGVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMA 155 (212)
T ss_pred CCcEEEeCCCCCCCcccCCcchhhHHHHHH-hccccc-cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHH
Confidence 8999999886543332211111 112233 333333 7899999999665421111 11133 689999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCC
Q 010156 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
+.++.++++.++.. +.++.|+|+||+..+ ...+..+++.+.++.++++.||++
T Consensus 156 l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 156 LYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 99998888877764 556889999997643 122467899999999999999975
No 36
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.94 E-value=2.7e-25 Score=222.48 Aligned_cols=227 Identities=23% Similarity=0.335 Sum_probs=164.1
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc---CC-CC-----Ccee
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---NP-EK-----RTII 238 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~~~---~~-~~-----~~i~ 238 (516)
.+..++|+|+ +|||+||||+++|||.+||++|+||++||+|+++++++.+||.... +... .. .. +.+.
T Consensus 28 ~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~ 106 (329)
T cd02033 28 TKKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVC 106 (329)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceE
Confidence 3456899998 6999999999999999999999999999999999999998885432 1110 00 00 1111
Q ss_pred eeccCCceEEcCCCCCCcccccCCccHHHHHH--HHHHh---cccCCCCEEEEcCCCCCC--hhhhhhhhhcCCCeEEEE
Q 010156 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIV 311 (516)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~--~l~~~---~~~~~yD~VIID~pp~~~--~~~~~~~~~~~~d~viiV 311 (516)
. ...|++++..+ ....+++......+. ++++. ..| +||||||||+++.. ...+... ...++.+++|
T Consensus 107 ~-~~~gv~~~~~g----~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVV 179 (329)
T cd02033 107 F-KRDGVFAMELG----GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVV 179 (329)
T ss_pred E-EeCCEEEecCC----CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEe
Confidence 1 23578877543 234556554332222 34443 356 79999999966442 1112222 1236789999
Q ss_pred eCCCcchHHH---HHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcc
Q 010156 312 TTPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASG 386 (516)
Q Consensus 312 ~~p~~~s~~~---~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~ 386 (516)
++|+..++.+ +.+.++++++.+ .+++|+|+||+.. .+..+++++.+++++++.||+++.+.++.
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a~ 248 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRKS 248 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHHH
Confidence 9999999965 556678888774 6789999999532 23578899999999999999999999999
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHHH
Q 010156 387 DSGMPEVAADPCGEVANTFQDLGVCVVQQCA 417 (516)
Q Consensus 387 ~~g~pl~~~~p~s~~~~~~~~La~~i~~~~~ 417 (516)
.+|+++ ..|+++++++|+++|+.|.+...
T Consensus 249 ~~g~~~--~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 249 AAYQIV--GRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HcCCee--cCCCCHHHHHHHHHHHHHHHhcC
Confidence 999953 56889999999999999987433
No 37
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.94 E-value=1.8e-25 Score=222.77 Aligned_cols=229 Identities=20% Similarity=0.258 Sum_probs=147.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccccC----------CCCCceeeec
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 241 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~--~~~~~~----------~~~~~i~~~~ 241 (516)
|+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++..+++... .+.+.. ...+.+.+..
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 999999999999999999999999999999999999888866321 211100 1112222222
Q ss_pred cCCceEEcCCCCCCcccccCC---ccH---HHHHHHHHHhcccCCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeC
Q 010156 242 YLGVKLVSFGFSGQGRAIMRG---PMV---SGVINQLLTTTEWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTT 313 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~---~~~---~~~l~~l~~~~~~~~yD~VIID~pp~~--~~~~~~~~~~~~~d~viiV~~ 313 (516)
..+.................+ ... ...++.+ ..+. .+||||||||++.. +.. ........+|.+++|+.
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l-~~~~-~~yD~IliD~~~~~~~~g~-~~~~a~~~Ad~viVvt~ 156 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKL-GFHD-WDFDFVLMDFLGDVVCGGF-ATPLARSLAEEVIVIGS 156 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHh-hhhc-ccCCEEEEecCCCcccccc-ccchhhhhCCeEEEEec
Confidence 222211000000000000000 110 1222222 1122 48999999996643 111 11112346899999999
Q ss_pred CCcchHHHHHHHHH---HHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccC
Q 010156 314 PQKLAFIDVAKGVR---MFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDS 388 (516)
Q Consensus 314 p~~~s~~~~~~~~~---~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~ 388 (516)
|+..++.++.++.+ ++++.+ ++++|+|+||+.. .+..+++++++++++++.||+++.+.++. .
T Consensus 157 ~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~i~vLg~IP~d~~i~~~~-~ 224 (296)
T TIGR02016 157 NDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVGIPVLAAIPADEELRRKS-L 224 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcCCCeEEECCCCHHHHHHh-c
Confidence 99999877655544 555653 6789999999532 13567889999999999999999999844 3
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHHHH
Q 010156 389 GMPEVAADPCGEVANTFQDLGVCVVQQCAK 418 (516)
Q Consensus 389 g~pl~~~~p~s~~~~~~~~La~~i~~~~~~ 418 (516)
+.+.....+.+..++.|.++|+.|.+++..
T Consensus 225 ~~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 225 AYQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CCCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 344444455666999999999999887654
No 38
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=99.93 E-value=4.7e-26 Score=185.50 Aligned_cols=87 Identities=30% Similarity=0.510 Sum_probs=74.7
Q ss_pred ceeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCCC-c
Q 010156 426 AVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF-S 504 (516)
Q Consensus 426 ~~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dgh-~ 504 (516)
.+.+++..+.|.|+|.||.+ +.|++.|||+|||||.|+++.++||.++...+|.+|++.+++++|+|+|+|.|+||| +
T Consensus 2 ~i~l~~~~~~l~i~w~DG~~-~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~s 80 (89)
T PF06155_consen 2 EIKLDKDERHLEIEWSDGQE-SRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHDS 80 (89)
T ss_dssp EEEEECCTTEEEEEETTSEE-EEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB--
T ss_pred eEEEecCCCEEEEEECCCCE-EEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCce
Confidence 35677788999999999997 999999999999999999999999987888999999999999999999999999999 6
Q ss_pred cccchhhhh
Q 010156 505 QVVCLILFH 513 (516)
Q Consensus 505 s~y~~~~L~ 513 (516)
|+|+|+|||
T Consensus 81 giY~~~~Lr 89 (89)
T PF06155_consen 81 GIYPWEWLR 89 (89)
T ss_dssp -EEEHHHHH
T ss_pred eEecHHHhC
Confidence 799999997
No 39
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.93 E-value=2.8e-24 Score=202.75 Aligned_cols=225 Identities=25% Similarity=0.312 Sum_probs=160.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc---------cCCC----------
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE---------MNPE---------- 233 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~---------~~~~---------- 233 (516)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+..... .+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 46799999999999999999999999875 899999999999999999987643100 0000
Q ss_pred ---CCceeeeccCCceEEc--------------C----------C-----CCCCc-c----cc-cCCccHHHHHHHHHHh
Q 010156 234 ---KRTIIPTEYLGVKLVS--------------F----------G-----FSGQG-R----AI-MRGPMVSGVINQLLTT 275 (516)
Q Consensus 234 ---~~~i~~~~~~~l~vl~--------------~----------~-----~~~~~-~----~~-~~~~~~~~~l~~l~~~ 275 (516)
...+.........+.| . | ....+ . .+ ...+....++..+...
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 0112110000000000 0 0 00000 0 00 0111123345555544
Q ss_pred cccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccc
Q 010156 276 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 276 ~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.. +.-|++|||+|||++-..+.. +..+|.+++|+.|+..++.+++++++..+.++++ .++|+||.. .
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~--~------- 226 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYN--L------- 226 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCC--C-------
Confidence 43 336999999999999776654 6688999999999999999999999999999998 678999952 1
Q ss_pred cCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHHHHHHHHHHHH
Q 010156 356 FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 414 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~~La~~i~~ 414 (516)
+....+++.++.|+++++.||++..+.++...|.|+.. ++++.+..+...+..+.+
T Consensus 227 -g~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 227 -GDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred -CchHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence 11258899999999999999999999999999999998 778888887777655543
No 40
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.91 E-value=4.5e-24 Score=202.38 Aligned_cols=170 Identities=21% Similarity=0.283 Sum_probs=126.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeeeccCCc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLGV 245 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~---~~----~~~~~~~~i~~~~~~~l 245 (516)
+|+|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++.+..+++.... +. ......+.+.....+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 789999999999999999999999999999999999999999987777665431 11 11122233444445799
Q ss_pred eEEcCCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
+++|.+...... ..+... .+.++++.+. ..||||||||||...... .......+|.+++|+.|+..+...+.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~~----~l~~~l~~l~-~~yD~ViiD~pp~~~~~~-~~~~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSS----NFKTLIETLR-KYFDYIIIDTPPIGTVTD-AAIIARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCccccch-HHHHHHhCCeEEEEEECCCCCHHHHHH
Confidence 999987643322 222322 3455555554 789999999999432111 111123479999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccC
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
.++.+++.+.+++|+|+|+++...
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccccc
Confidence 999999999999999999976544
No 41
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.91 E-value=3.1e-23 Score=191.56 Aligned_cols=219 Identities=20% Similarity=0.270 Sum_probs=165.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCcccccc-------------c-CC-C-----
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLE-------------M-NP-E----- 233 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~~~~~~~l~~~~~~~~-------------~-~~-~----- 233 (516)
+|+|+ ||||+||||+|+.||..|..+ |++||+||+|+ ..+++..||.+..... . .. .
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 68887 999999999999988887766 59999999999 6688888887652000 0 00 0
Q ss_pred -----CCcee---eeccCCceEEcCCCCC---CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhh
Q 010156 234 -----KRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 302 (516)
Q Consensus 234 -----~~~i~---~~~~~~l~vl~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~ 302 (516)
...+. ....++++++.+|... .+..+. ...+++++++.+....||+||+||-.|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp----~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP----MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch----HHHHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 00000 1123567888777543 233332 23466677766665779999999999987544433 4
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhH
Q 010156 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (516)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (516)
-.+|.+++|+.|+..|+..+.+..++.++++++.+++|+|++... ...+.+.....|.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~----------e~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE----------EELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch----------hHHHHhhhhccCCeEEEEccCCHHH
Confidence 467999999999999999999999999999999999999997532 1346677788899999999999999
Q ss_pred hhcccCCCceEEeCCCCHHHHHHHHHHHHHHH
Q 010156 383 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 414 (516)
Q Consensus 383 ~~a~~~g~pl~~~~p~s~~~~~~~~La~~i~~ 414 (516)
.++-..|.|+.... .+.+++.++++.|.+
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~ 252 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIK 252 (255)
T ss_pred HhccccCCccccch---hhhHHHHHHHHHHHh
Confidence 99999999998753 677888888877664
No 42
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.91 E-value=7.3e-24 Score=201.25 Aligned_cols=164 Identities=24% Similarity=0.271 Sum_probs=122.8
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCccc--cc----ccC-CCCCceeeecc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LL----EMN-PEKRTIIPTEY 242 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~~~~~~~l~~~~~--~~----~~~-~~~~~i~~~~~ 242 (516)
+.+++|+|+|+|||+||||+|+|||++||+ .|+|||+||+|++++.++.+++.+.. +. ... ...+.+.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 457899999999999999999999999997 69999999999999888888776543 11 111 22233444446
Q ss_pred CCceEEcCCCCCCccc-ccCCccHHHHHHHHHHhcccCCC--CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 010156 243 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~y--D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
++++++|.+....... .... ..+.++++.++ .+| |||||||||+.+....... ...+|.+++|+.++..+.
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~----~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLAS----QRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCCCCH
Confidence 7999999876544321 2222 23455555444 566 9999999998864222111 336799999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVEN 342 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N 342 (516)
.++.++++.++ +.+++|+|+|
T Consensus 187 ~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999998 6788999998
No 43
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.91 E-value=9.2e-24 Score=196.02 Aligned_cols=179 Identities=27% Similarity=0.340 Sum_probs=123.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
+|+|+|+|||+||||+|+|||.+| +||++||+|+++++++.+++.+......... .......++..+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 389999999999999999999999 7999999999999999999876532110000 000000111111111110
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (516)
++......+.+.....++.||||||||||+.++..... +..+|.+++|+.|+..++.++.+.++.+++.+.
T Consensus 74 -------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~ 144 (179)
T cd03110 74 -------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFGI 144 (179)
T ss_pred -------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcCC
Confidence 11111111112111224799999999999998755443 457899999999999999999999999998887
Q ss_pred CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecC
Q 010156 335 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (516)
Q Consensus 335 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (516)
+ +++|+|+++..... .....++.+.+|.++++.||
T Consensus 145 ~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 145 P-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred C-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 7 58999997643221 13466778888999999987
No 44
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.90 E-value=2.1e-23 Score=206.95 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=125.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--c---cccCCCCCceee-eccCCc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIP-TEYLGV 245 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~---~~~~~~~~~i~~-~~~~~l 245 (516)
..|+|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++.++.+++.+.. + .......+.+.. ...+|+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 4579999999999999999999999999999999999999999988877775432 1 111112223332 235799
Q ss_pred eEEcCCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 246 ~vl~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
+++|+|..... ...+..+. +..+++.++ +.||||||||||....... ......+|.+++|++++.++..++.+
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~----~~~~l~~l~-~~yD~ViiD~pp~~~~~d~-~~~~~~~d~vilV~~~~~t~~~~~~~ 255 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPA----FTDLLNKVM-GDYDVVIVDTPSAEHSSDA-QIVATRARGTLIVSRVNETRLHELTS 255 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHH----HHHHHHHHH-hcCCEEEEeCCCcccccHH-HHHHHhCCeEEEEEECCCCCHHHHHH
Confidence 99998865433 23333333 445555443 7899999999997542111 11133579999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEec
Q 010156 325 GVRMFSKLKVPCIAVVENM 343 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~ 343 (516)
.++.+++.+.+++|+|+|+
T Consensus 256 ~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 256 LKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999996
No 45
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.90 E-value=1.7e-23 Score=201.01 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=132.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
|++|+|.|.||||||||+++|||.+|+++|+||++||+|+|++...++ +.... . ..++......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~-~~~~~--------~----~~~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWK-ENALR--------S----NTWDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHH-Hhhcc--------c----cCCCccceec---
Confidence 579999999999999999999999999999999999999999755443 11000 0 0000000000
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc-
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK- 331 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~- 331 (516)
.. .....++..++...++.||||||||||+.+.....+ +..+|.+++|+.|+..++..+.++++.+.+
T Consensus 65 --------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~ 133 (231)
T PRK13849 65 --------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIEL 133 (231)
T ss_pred --------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 00 011234454444433689999999999988665443 567899999999999999888877766543
Q ss_pred -----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCCChhHhhcccCCCceEEeCCCC---HHH
Q 010156 332 -----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCG---EVA 402 (516)
Q Consensus 332 -----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pl~~~~p~s---~~~ 402 (516)
.+++ ..+|+||+...... ...+...++.+. .+++ ..|+.+..+.++...|.+.....+.+ ...
T Consensus 134 ~~~~~~~l~-~~iv~~~~~~~~~~-----~~~~~~~~~~~~--~~vl~t~I~~r~~~~~a~~~G~~~~~~~~~~~~~~~~ 205 (231)
T PRK13849 134 LLSENLAIP-TAILRQRVPVGRLT-----TSQRAMSDMLES--LPVVDSPMHERDAFAAMKERGMLHLTLLNLSTDPTMR 205 (231)
T ss_pred HHHhCCCCC-eEEEEEecccccCC-----HHHHHHHHHHhc--CCCCCccccchHHHHHHHhcCCcccchhhccccHHHH
Confidence 2344 45999997532211 111233444443 3444 45899999999999999776533322 222
Q ss_pred HHHHHHHHHH
Q 010156 403 NTFQDLGVCV 412 (516)
Q Consensus 403 ~~~~~La~~i 412 (516)
....++...+
T Consensus 206 ~~~~~~~~~~ 215 (231)
T PRK13849 206 LLERNLRIAM 215 (231)
T ss_pred HHHHhHHHHH
Confidence 3455554444
No 46
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.9e-22 Score=183.84 Aligned_cols=233 Identities=22% Similarity=0.241 Sum_probs=172.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccc--------cCCCCCceeeecc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 242 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~--~~~~--------~~~~~~~i~~~~~ 242 (516)
|+.|+|+ +|||.||||++.|+|.+||..|+||++|-|||.+.++..++|... .+.+ .....+.+....+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 5689999 999999999999999999999999999999999988888887322 1111 1233456677788
Q ss_pred CCceEEcCCCCCCcccccCCccHHHHHHHHHHhcc-cCCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchH
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~yD~VIID~pp~~--~~~~~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
.|++.+.+|.+..+... .+......++-|.+.-. ....|+||+|...-. |-..+.+. --.+|.+.+|+..+..++
T Consensus 80 ~Gv~CVEsGGPepGvGC-AGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiR-eg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGC-AGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIR-EGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCc-ccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehh-cccCcEEEEEecCchHHH
Confidence 89999987765544332 22222333333322201 134699999995421 11111111 124799999999999999
Q ss_pred HHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 320 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 320 ~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
..+.+..+-+.+ .+++.-|+|.|....+. ..+.++.+++.+|.++++.||++..+.+|...|+++.++
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~--------e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR--------ERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCccc--------HHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 988877665554 35778899999743222 235789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~ 416 (516)
+|+|..++.|++||+.|.+.-
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~ 250 (278)
T COG1348 230 APDSNQAEEYRELAKKILENE 250 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCC
Confidence 999999999999999988643
No 47
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.89 E-value=1.8e-22 Score=191.37 Aligned_cols=231 Identities=19% Similarity=0.247 Sum_probs=156.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccc----cC----CCCCceeeeccC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----MN----PEKRTIIPTEYL 243 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~~----~~----~~~~~i~~~~~~ 243 (516)
|.|+|+ +|||.||||++.||+.+||++|+||+.|.|||...++..+++.... +.+ .. ...+.+....+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 579999 9999999999999999999999999999999999888776654422 111 01 112344555678
Q ss_pred CceEEcCCCCCCcccccCCccHHHHHHHHHH--hcccCCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLT--TTEWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~yD~VIID~pp~~--~~~~~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
|+..+.+|.+..+... .+......++-+-+ ... .+||||+.|.-.-. |-..+... .-.++.+++|+..+..|+
T Consensus 80 gi~CvEsGGPePGvGC-aGRGI~~a~~~L~~~~~~~-~~~D~v~yDVLGDVVCGGFamPir-~g~a~evyIVtSge~msl 156 (273)
T PF00142_consen 80 GILCVESGGPEPGVGC-AGRGIITALELLEELGAYE-DDYDFVLYDVLGDVVCGGFAMPIR-EGYAQEVYIVTSGEFMSL 156 (273)
T ss_dssp GEEEEE---SCTTSSB-HHHHHHHHHHHHHHTTTST-STSSEEEEEEESSSSCTTTTHHHH-TTS-SEEEEEEBSSHHHH
T ss_pred CceeeccCCCcccccc-cccchhhhhhhHHhhhhhh-cCCceEEEEEEeeeEEeeeehhhh-hccCCEEEEEecCcHHHH
Confidence 8999987755433222 11222222222221 122 56999999984321 11122221 224699999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
..+.+..+.+++. +.++.|+|.|..... ...+.+++++++.|.++++.||++..+.++...+++++++
T Consensus 157 yAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--------~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~ 228 (273)
T PF00142_consen 157 YAANNICKAIKNFADRGGARLGGIICNSRNVD--------DEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEA 228 (273)
T ss_dssp HHHHHHHHHHHHHCTTSS-EEEEEEEE-SSST--------THHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEecCCCCC--------CchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEe
Confidence 9998887777654 357889999963221 1235789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~ 416 (516)
.|+++.+..|++||+.|.+.-
T Consensus 229 ~P~s~~a~~yr~LA~~I~~~~ 249 (273)
T PF00142_consen 229 APDSEQAQEYRELARKILENP 249 (273)
T ss_dssp -TTSHHHHHHHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999998764
No 48
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.87 E-value=3.6e-22 Score=187.42 Aligned_cols=191 Identities=24% Similarity=0.324 Sum_probs=122.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (516)
|+|+|+|||+||||+|++||..|+++|+||++||+|++++.+..+++..+............ ....+.. .+.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~------ 72 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI-LKNFESQ-DIY------ 72 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH-HESCCHH-HHH------
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhh-hhccchh-hhh------
Confidence 78999999999999999999999999999999999999988777765511000000000000 0000000 000
Q ss_pred cccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--
Q 010156 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-- 333 (516)
Q Consensus 256 ~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~-- 333 (516)
..-.+ .....++++++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 73 --~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~ 147 (195)
T PF01656_consen 73 --QGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGKK 147 (195)
T ss_dssp --HHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHT
T ss_pred --hhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhccc
Confidence 00000 223456666655443459999999999998764433 56789999999999999999999999999877
Q ss_pred CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCe-E-EecCCChhHhh
Q 010156 334 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-L-FDLPIRPTLSA 384 (516)
Q Consensus 334 ~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-l-~~IP~~~~i~~ 384 (516)
.+.+++|+||+....... .....+.....++.+. + +.||++..+.|
T Consensus 148 ~~~~~vv~N~v~~~~~~~-----~~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 148 LKIIGVVINRVDPGNESK-----LQEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp EEEEEEEEEEETSCCHHH-----HHHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred cceEEEEEeeeCCCccch-----HHHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 458899999975432110 0112333334444332 2 77999887764
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.86 E-value=1.4e-21 Score=219.85 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=131.0
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (516)
...|+|+|+|.|||+||||+|+|||..||+.|+|||+||+|+++++++.+++.... +.+.....+.+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 45689999999999999999999999999999999999999999888888776432 111122233444556789
Q ss_pred ceEEcCCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
++++|+|..... ...+.++. +.++++.+. +.||||||||||..+....... ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~----~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPA----MFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccHH----HHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 999998854322 23334433 344444443 7899999999998764333221 2357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
+.++.++..+.+++|+|+|++....
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhh
Confidence 9999999999999999999976544
No 50
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.84 E-value=2.4e-20 Score=207.82 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=130.4
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (516)
...|+|+|+|.+||+||||+|+|||.+||..|+|||+||+|++++.++.+++.... +.+.....+.+.....+|
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 34589999999999999999999999999999999999999999988877765432 111222334555555689
Q ss_pred ceEEcCCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
+++||.|..... .+.+..+ .+.++++.++ ..||||||||||..+....... ...+|.+++|+.++.++...+.
T Consensus 609 l~vl~~g~~~~~p~ell~~~----~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~ 682 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVS 682 (726)
T ss_pred EEEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHH
Confidence 999998754332 2333333 4555555554 7899999999997753222221 2357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccc
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.++.+++.+.+++|+|+|++..
T Consensus 683 ~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 683 LSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred HHHHHHHhCCCceEEEEEeCccc
Confidence 99999999999999999999753
No 51
>PRK11519 tyrosine kinase; Provisional
Probab=99.84 E-value=2.2e-20 Score=207.83 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=131.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCCc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (516)
..++|+|+|.+||+||||++.|||..||+.|+|||+||+|+++|+++.+++.... +.+.....+.+.....+|+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4589999999999999999999999999999999999999999998888776532 1122233455666666899
Q ss_pred eEEcCCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
++||.|...... +.+. ...+.++++.++ ..||||||||||..+.. ........+|.+++|+.++.+....+..
T Consensus 605 ~~lp~g~~~~~~~ell~----s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~-Da~~l~~~~d~~l~Vvr~~~t~~~~~~~ 678 (719)
T PRK11519 605 DLIPRGQVPPNPSELLM----SERFAELVNWAS-KNYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVET 678 (719)
T ss_pred EEEeCCCCCCCHHHHhh----HHHHHHHHHHHH-hcCCEEEEeCCCcccch-HHHHHHHHCCeEEEEEeCCCCCHHHHHH
Confidence 999988643322 3332 345566666655 78999999999966422 1112234579999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEeccc
Q 010156 325 GVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~ 345 (516)
.++.+++.+.+++|+|+|++.
T Consensus 679 ~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 679 SLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHHHhCCCCeEEEEEeCCc
Confidence 999999999999999999974
No 52
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.83 E-value=8.1e-21 Score=185.71 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=124.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc----ccccCCC--------CCceeeeccC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLEMNPE--------KRTIIPTEYL 243 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~----~~~~~~~--------~~~i~~~~~~ 243 (516)
|.++++|||+||||+|+|+|..+|+.|+|||+||+|++. +++.+|+.+.. ....... ...+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 456679999999999999999999999999999999974 77777766411 0000000 0000000001
Q ss_pred CceEEcCCCCCCc-----ccccCCccH--HHHHHHHHHhcccCCCCEEEEcCCCCCChhh--hh----------hhhhcC
Q 010156 244 GVKLVSFGFSGQG-----RAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----------LCQVVP 304 (516)
Q Consensus 244 ~l~vl~~~~~~~~-----~~~~~~~~~--~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~~----------~~~~~~ 304 (516)
.++.+..+..... ......+.. ...+..+.+.+.+.+||+|||||||. +... +. ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPt-g~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPT-GHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc-HHHHHHHHhHHHHHHHHHHhcCCc
Confidence 1111211100000 000111222 22344454544457899999999994 3321 10 111112
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC-ccc----cccCCchHHHHHHHhCCCeEEecCCC
Q 010156 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG-KRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~-~~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
.+.+++|++|+..++.++.++++.+++.++++.|+|+|++...... ..+ ...++..++++.+.|+...+..+|+.
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 4578999999999999999999999999999999999998764431 111 11234567777777766666677754
Q ss_pred h
Q 010156 380 P 380 (516)
Q Consensus 380 ~ 380 (516)
+
T Consensus 240 ~ 240 (254)
T cd00550 240 P 240 (254)
T ss_pred C
Confidence 3
No 53
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.82 E-value=1.4e-19 Score=152.90 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=91.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (516)
+|+++|+|||+||||++.|||.++++. |++|+++|+|+|.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999753
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 010156 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (516)
|||||||||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998665543 56789999999999999999999999998876
Q ss_pred CC---EEEEEEec
Q 010156 334 VP---CIAVVENM 343 (516)
Q Consensus 334 ~~---~~gvV~N~ 343 (516)
.+ .+.+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 54 78889886
No 54
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.82 E-value=1.4e-19 Score=160.67 Aligned_cols=108 Identities=36% Similarity=0.528 Sum_probs=93.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
+|+|+|+|||+||||++.++|..++.+|++|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999876431
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-C
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 333 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~-~ 333 (516)
|||||||+||+.+...... +..+|.+++|+.|+..++.++.+.++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999988766544 5578999999999999999999998888643 4
Q ss_pred CCEEEEEEecccc
Q 010156 334 VPCIAVVENMCHF 346 (516)
Q Consensus 334 ~~~~gvV~N~~~~ 346 (516)
...+++|+|++..
T Consensus 97 ~~~~~lVvN~~~~ 109 (139)
T cd02038 97 VLNFRVVVNRAES 109 (139)
T ss_pred CCCEEEEEeCCCC
Confidence 4568899999753
No 55
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.81 E-value=1.2e-18 Score=172.94 Aligned_cols=231 Identities=23% Similarity=0.297 Sum_probs=178.5
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCcccc--cc----cCC----CCCcee
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRL--LE----MNP----EKRTII 238 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~~~~~~~l~~~~~~--~~----~~~----~~~~i~ 238 (516)
....++++|.+.|||+|-||+|.|+|+.++. .++.|+++|+|.+++....+++.+... .+ ... ..+...
T Consensus 101 ~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~ 180 (366)
T COG4963 101 AQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLL 180 (366)
T ss_pred hhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHH
Confidence 3446899999999999999999999999996 589999999999998877777765431 11 000 012222
Q ss_pred eeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 010156 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (516)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s 318 (516)
....+++++++..........+.. ..+..+++.+. ..||+||+|.|-...+.+..+ +..+|.+++|++++..+
T Consensus 181 ~~~~~~l~ll~a~~~~~~~~d~~~----~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 181 TRLASGLKLLAAPTELAKNYDLKT----GAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred hccCCCceeecCCcchhhhccccc----chHHHHHHHhh-ccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHHH
Confidence 334578888886544333322222 23445555444 799999999997777776665 56889999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChh-HhhcccCCCceEEe
Q 010156 319 FIDVAKGVRMFSKLKV--PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT-LSASGDSGMPEVAA 395 (516)
Q Consensus 319 ~~~~~~~~~~l~~~~~--~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~-i~~a~~~g~pl~~~ 395 (516)
++.++++++.+++.+. +....|+|++...... ..+++.+.+|++.+..+|+|+. +..|.++|+++.+.
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~ 324 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---------EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEV 324 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---------CHHHHHHHhCCchhccccCCchhhhhhhccCcccccc
Confidence 9999999999998753 4677899996543321 2789999999999999999985 56899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~ 416 (516)
+|.+++++++..++..+...+
T Consensus 325 ~~~~~~~k~l~~la~~l~~~~ 345 (366)
T COG4963 325 DPGSPAAKALAQLAQSLGGRI 345 (366)
T ss_pred CCCChHHHHHHHHHHHhcCcc
Confidence 999999999999999887653
No 56
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.78 E-value=3.5e-19 Score=170.32 Aligned_cols=166 Identities=22% Similarity=0.229 Sum_probs=106.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC-------CCCCCCCCcccccc------cCCCCCcee-eec
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRLLE------MNPEKRTII-PTE 241 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~-------~~~~~l~~~~~~~~------~~~~~~~i~-~~~ 241 (516)
|.++++|||+||||+++++|..+|+.|+||++||+|++.+ ++..+++..+.... ......... ...
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 3577899999999999999999999999999999999984 33333332100000 000000000 000
Q ss_pred cCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-hhhhc--CCCeEEEEeCCCcch
Q 010156 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVV--PLTAAVIVTTPQKLA 318 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~-~~~~~--~~d~viiV~~p~~~s 318 (516)
..+..+++.+. ..+++.....+.++++.+.+.+||||||||||+....... ...+. .+|.+++|+.|+..+
T Consensus 81 ~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH
Confidence 12233333222 1122222223566666665345999999999963322111 11122 247899999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..++.++++.+++.+.++.|+|+|++...
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 99999999999999999999999997643
No 57
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.77 E-value=6e-18 Score=158.81 Aligned_cols=182 Identities=23% Similarity=0.321 Sum_probs=119.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeecc-CCceEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEY-LGVKLVSFG 251 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~-~~l~vl~~~ 251 (516)
|++|+|+|.|||+||||.+..||..|+++|.+|.+||+||+.|...|.-.... +..+ +++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~-------------~~~~~~~~~V~~~- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQR-------------PGAWPDRIEVYEA- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccc-------------cCCCCCCeeEEec-
Confidence 67999999999999999999999999999999999999999987655311100 0001 12222210
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (516)
.-...+++..+......|||||||+.++.+.....+ +..+|.+++|+.++......+.+.++++.+
T Consensus 67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHH
Confidence 011245555554443579999999998776554433 557899999999999999988888887765
Q ss_pred C------CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE-ecCCChhHhhcccCCC
Q 010156 332 L------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-DLPIRPTLSASGDSGM 390 (516)
Q Consensus 332 ~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~IP~~~~i~~a~~~g~ 390 (516)
. +++ ..|+++|+....... .+....++.+ ++|++- .+..+..+++-...|.
T Consensus 133 ~~~~~~~~ip-~~Vl~Tr~~~~~~~~-----~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~ 190 (231)
T PF07015_consen 133 LEKAERRDIP-AAVLFTRVPAARLTR-----AQRIISEQLE--SLPVLDTELHERDAFRAMFSRGL 190 (231)
T ss_pred HHHhhCCCCC-eeEEEecCCcchhhH-----HHHHHHHHHh--cCCccccccccHHHHHHHHHhcc
Confidence 4 344 478999875332111 0112233333 355543 3555556666666664
No 58
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.76 E-value=8.5e-18 Score=141.52 Aligned_cols=99 Identities=32% Similarity=0.504 Sum_probs=85.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
+|+|.|.|||+||||++.+||..|+++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999987
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 331 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~---~l~~ 331 (516)
||+||||+||+.+...... +..+|.+++|+.++..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988655533 56789999999999999999999887 3333
Q ss_pred --CCCCEEEEEEe
Q 010156 332 --LKVPCIAVVEN 342 (516)
Q Consensus 332 --~~~~~~gvV~N 342 (516)
.+....|+|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 24557888876
No 59
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.75 E-value=1.8e-19 Score=169.31 Aligned_cols=209 Identities=27% Similarity=0.296 Sum_probs=104.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (516)
++|+|.|+||||||||+|+|||.+|+++|+||.++|+|.++++++.+++......... ....+. +....++.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~---gi~Lp~--p~~~~L~~--- 72 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD---GIELPV--PSHFFLPP--- 72 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHH---T--------EEE-SSS---
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhc---CcccCC--ccceeecc---
Confidence 4899999999999999999999999999999999999999999888875332211110 000111 11111221
Q ss_pred CCcccccCCcc-HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH------------
Q 010156 254 GQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI------------ 320 (516)
Q Consensus 254 ~~~~~~~~~~~-~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~------------ 320 (516)
.....+.++. ....+++++..+. .++|||||||| |.++.... .+...+|.++.|.+.+...+.
T Consensus 73 -~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr-~Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v 148 (261)
T PF09140_consen 73 -DQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSR-VAHSMADTLITPLNDSFVDFDLLGQVDPETFKV 148 (261)
T ss_dssp -HHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHH-HHHHT-SEEEEEEESSHHHHCCCEEE-TTTS-E
T ss_pred -cccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHH-HHHHhCCEEEccCchhHHhHHHHhccCccccee
Confidence 1122233332 2357788887775 69999999999 45544333 234456766655554333222
Q ss_pred ----HHHHHHHHHHcC-----CCCEEE-EEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCC
Q 010156 321 ----DVAKGVRMFSKL-----KVPCIA-VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (516)
Q Consensus 321 ----~~~~~~~~l~~~-----~~~~~g-vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (516)
-...++-..++. +.++-. |+-||..... .+....-.+.++++.+..|..+..-+..+--++|-.-.|.
T Consensus 149 ~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~--a~Nk~~~~~~l~~ls~rigfr~~~G~~eRvi~RelFp~Gl 226 (261)
T PF09140_consen 149 IGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLD--ARNKRRVEEALEELSKRIGFRVAPGFSERVIYRELFPRGL 226 (261)
T ss_dssp EEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT----HHHHHHHHHHHHHHHHHHT-EEEE--B--HHHCCCGGGT-
T ss_pred cCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHH--hHHHHHHHHHHHHHHHhhCceeCCCcchhhhhHHhccccc
Confidence 001122122221 233333 3446643221 0000111246778888889777665666666666666676
Q ss_pred ceEEeC
Q 010156 391 PEVAAD 396 (516)
Q Consensus 391 pl~~~~ 396 (516)
++.+..
T Consensus 227 TllDl~ 232 (261)
T PF09140_consen 227 TLLDLK 232 (261)
T ss_dssp -GGGSC
T ss_pred hhhccc
Confidence 665543
No 60
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.74 E-value=6.3e-18 Score=140.33 Aligned_cols=88 Identities=31% Similarity=0.621 Sum_probs=82.1
Q ss_pred CCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEE
Q 010156 71 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (516)
Q Consensus 71 ~~~~~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v 150 (516)
.....++++|+++|++|+|||+++|||+|||||+|.+++.++.+.|.|++|+++||+.+.+..++++++..++|++.++|
T Consensus 8 ~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V 87 (111)
T COG2151 8 EAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEV 87 (111)
T ss_pred chhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEE
Confidence 44567899999999999999999999999999999999722689999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 010156 151 TMSAQPAR 158 (516)
Q Consensus 151 ~l~~~p~~ 158 (516)
+++++|+.
T Consensus 88 ~l~~~p~W 95 (111)
T COG2151 88 ELTLSPPW 95 (111)
T ss_pred EEEEcCCC
Confidence 99999875
No 61
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.73 E-value=2e-17 Score=165.42 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=120.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeee-ccCCceEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-EYLGVKLVSFG 251 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~vl~~~ 251 (516)
||+|.| +|||||||||+|+.+|.++|++|+|||++..||.+ ++...|+.+-. ...... ..+||+.+..+
T Consensus 1 ~r~~~~-~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~--------~~~~~v~~~~~L~a~eid 70 (305)
T PF02374_consen 1 MRILFF-GGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG--------GEPTKVEGVPNLSAMEID 70 (305)
T ss_dssp -SEEEE-EESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B--------SS-EEETTCSSEEEEE--
T ss_pred CeEEEE-ecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC--------CCCeEecCCCCceeeecC
Confidence 355555 59999999999999999999999999999999976 45555554211 001111 12344444322
Q ss_pred CC--------------C-------------CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------
Q 010156 252 FS--------------G-------------QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------ 298 (516)
Q Consensus 252 ~~--------------~-------------~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~------ 298 (516)
.. . .....++|-.-...+..+.+.+..++||+||+||||.-....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l 150 (305)
T PF02374_consen 71 PEAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERL 150 (305)
T ss_dssp HHHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHH
Confidence 10 0 00011122222334555555555589999999999961110000
Q ss_pred --------------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 010156 299 --------------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (516)
Q Consensus 299 --------------------------------------------------~~~~~~~d~viiV~~p~~~s~~~~~~~~~~ 328 (516)
...-.....+++|++|+..++..+.+++..
T Consensus 151 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~ 230 (305)
T PF02374_consen 151 RWWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTE 230 (305)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHH
Confidence 000001356899999999999999999999
Q ss_pred HHcCCCCEEEEEEecccccCCCc-cc----cccCCchHHHHHHHhCCCeEEecCC
Q 010156 329 FSKLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFGIPHLFDLPI 378 (516)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~-~~----~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (516)
++..++++-++|+|++-...... .+ ...++..++++.+.|....+..+|.
T Consensus 231 L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~ 285 (305)
T PF02374_consen 231 LKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPL 285 (305)
T ss_dssp HHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE-
T ss_pred HHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999986554332 11 1123456778888886556667774
No 62
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.73 E-value=3.2e-18 Score=176.29 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred EEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecC-eeEEEEcCCCCccccchhhhhc
Q 010156 436 IKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGN-YAVSITWPDGFSQVVCLILFHS 514 (516)
Q Consensus 436 l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~-~~l~i~w~Dgh~s~y~~~~L~~ 514 (516)
|.|+|.||.+ ..|++.|||+||+|+.|+|+.|+||++++.++|.+|+|.++++.++ +.+.|.|+|||+|+|+++||++
T Consensus 2 l~v~w~dg~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQDGKT-SRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHLSEFPAEWLKK 80 (366)
T ss_pred eEEEeCCCCE-eeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCceEcCHHHHhh
Confidence 6799999997 9999999999999999999999999999999999999999998874 4589999999999999999998
Q ss_pred CC
Q 010156 515 KS 516 (516)
Q Consensus 515 ~~ 516 (516)
|+
T Consensus 81 ~~ 82 (366)
T TIGR02409 81 RC 82 (366)
T ss_pred cc
Confidence 64
No 63
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=2.7e-17 Score=131.58 Aligned_cols=89 Identities=25% Similarity=0.351 Sum_probs=81.8
Q ss_pred cccceeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCC
Q 010156 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (516)
Q Consensus 423 ~~~~~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dg 502 (516)
.+..+...+..+.|.+.|.||.. |.+++..||..||||+|....-+|+.+.+.. .+|.+..|+++||||++|.|+||
T Consensus 4 ~P~~lrvsk~r~~L~l~f~dg~~-~~L~ae~LRv~sPsAEvqghgp~q~v~v~gk--r~V~i~~i~p~GnYavri~FdDg 80 (120)
T COG3536 4 WPTELRVSKDRKVLSLTFADGAP-FRLPAEFLRVLSPSAEVQGHGPGQRVLVPGK--RNVQIRDIEPVGNYAVRILFDDG 80 (120)
T ss_pred CCceeEEeccCcEEEEEeCCCCc-ccCCHHHHHhcCchHHhcccCCCCceeeecc--ccceEEEeEecCceEEEEEecCC
Confidence 45556677788899999999998 9999999999999999999999999988876 68999999999999999999999
Q ss_pred C-ccccchhhhhc
Q 010156 503 F-SQVVCLILFHS 514 (516)
Q Consensus 503 h-~s~y~~~~L~~ 514 (516)
| +|+|+|.||+.
T Consensus 81 HDsGiy~W~YL~~ 93 (120)
T COG3536 81 HDSGIYTWAYLHE 93 (120)
T ss_pred cccCcccHHHHHH
Confidence 9 99999999985
No 64
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.69 E-value=3e-17 Score=148.68 Aligned_cols=141 Identities=27% Similarity=0.387 Sum_probs=98.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc----cc---------CCCCCcee
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL----EM---------NPEKRTII 238 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~----~~---------~~~~~~i~ 238 (516)
|+|+|+|.+||+||||+|.|||..||+.|++|++||+|...+.+..+++.+.. +. .. ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999988888776553 11 11 11122344
Q ss_pred eeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 010156 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (516)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s 318 (516)
.....++++++..........+.......+++.+ + ..||+||||+|+........ ..+..+|.+++|+.++..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l----~-~~yd~IivD~~~~~~~~~~~-~~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDAL----K-EHYDYIIVDLPSSLSNPDTQ-AVLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHH----H-HHSSEEEEEEESTTTHTHHH-HHHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHH----H-HcCCEEEEECcCCccHHHHH-HHHHHCCEEEEEECCCccc
Confidence 3345899999866655544444544444444444 3 58999999999988755432 1255789999999999887
Q ss_pred HH
Q 010156 319 FI 320 (516)
Q Consensus 319 ~~ 320 (516)
.+
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 65
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.64 E-value=2.7e-15 Score=149.62 Aligned_cols=196 Identities=22% Similarity=0.263 Sum_probs=125.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC-
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG- 251 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~- 251 (516)
+++|. ++|||||||||+|+.+|..+|+.|+|||+|..||.+ ++...|+.+-. ....... +||+.+...
T Consensus 2 ~riv~-f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh-sL~d~f~~elg--------~~~~~I~-~nL~a~eiD~ 70 (322)
T COG0003 2 TRIVF-FTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH-SLGDVFDLELG--------HDPRKVG-PNLDALELDP 70 (322)
T ss_pred cEEEE-EecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC-chHhhhccccC--------CchhhcC-CCCceeeecH
Confidence 34555 459999999999999999999999999999999977 45555444110 0000000 222222211
Q ss_pred --------------------------CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh--------
Q 010156 252 --------------------------FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-------- 297 (516)
Q Consensus 252 --------------------------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-------- 297 (516)
...+....++|-.-...+..+.+....++||+||+||||.-....+
T Consensus 71 ~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~ 150 (322)
T COG0003 71 EKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLG 150 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHH
Confidence 1111223344444445667777777778999999999995111000
Q ss_pred -----------h--------h----------------------------hhhc--CCCeEEEEeCCCcchHHHHHHHHHH
Q 010156 298 -----------T--------L----------------------------CQVV--PLTAAVIVTTPQKLAFIDVAKGVRM 328 (516)
Q Consensus 298 -----------~--------~----------------------------~~~~--~~d~viiV~~p~~~s~~~~~~~~~~ 328 (516)
. . ..+. .-....+|..|+..++....+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~ 230 (322)
T COG0003 151 WYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVER 230 (322)
T ss_pred HHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHH
Confidence 0 0 0000 0245678999999999999999999
Q ss_pred HHcCCCCEEEEEEecccccCCCccc----cccCCchHHHHHHHhCCCeEEecCCC
Q 010156 329 FSKLKVPCIAVVENMCHFDADGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
+...++++.++++|++.+....... ....+..+.++.+.|....+..+|.-
T Consensus 231 l~~~~i~v~~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~ 285 (322)
T COG0003 231 LSLYGIPVDAVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLL 285 (322)
T ss_pred HHHcCCchheeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEeccc
Confidence 9999999999999998766543211 11233356677777776667777754
No 66
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.63 E-value=1.3e-16 Score=163.72 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=62.4
Q ss_pred echhhhhcCCCCCccccCCCCcccccCCCCC---CCcccceEEEecCeeEEEEcCCCCccccchhhhhcCC
Q 010156 449 LHPATVRRNDRSAQSVDEWTGDQKLQYTDVP---EDIEPEEIRPMGNYAVSITWPDGFSQVVCLILFHSKS 516 (516)
Q Consensus 449 ~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~---~~i~~~~~~~~~~~~l~i~w~Dgh~s~y~~~~L~~~~ 516 (516)
||++||||||+|++|+|+.|+||++++.++| .++.+..+...+++ |+|+|+|||.|.|+++||++|+
T Consensus 2 f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~~-l~i~W~dgh~s~y~~~wL~~~~ 71 (362)
T TIGR02410 2 FHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDEDT-LRVTWPDGHVSKFKEDWLIRHS 71 (362)
T ss_pred CCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCCe-EEEEecCCCceecCHHHHHhcc
Confidence 6899999999999999999999999888887 99999999988774 9999999999999999998764
No 67
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.60 E-value=1.3e-15 Score=153.16 Aligned_cols=244 Identities=19% Similarity=0.205 Sum_probs=164.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...+|++|.++|++|+-..|..|| |...|+++|+-..- ...| .++-...+++.+.|++.|.++.|-.+.+
T Consensus 20 ~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~--g~ev-----~~~l~p~q~~iKiV~eELv~llG~~~~~ 92 (451)
T COG0541 20 GRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERAL--GEEV-----PKGLTPGQQFIKIVYEELVKLLGGENSE 92 (451)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhc--cccC-----CCCCCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 456899999999999999998888 88999999875542 1111 2334448899999999999988765555
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
+.+...|| .+|.++ |-.|+||||++..||.+|.++|+||++|-+|.+.|..-.-|
T Consensus 93 ~~l~~~~P----------------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL-------- 147 (451)
T COG0541 93 LNLAKKPP----------------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL-------- 147 (451)
T ss_pred cccCCCCC----------------eEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH--------
Confidence 55443333 377777 88999999999999999999999999999999998632111
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhc
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVV 303 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~ 303 (516)
-.....-++.+.+.+... ......++.++..+...||+|||||.....-... .+....
T Consensus 148 -------~~La~q~~v~~f~~~~~~---------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~ 211 (451)
T COG0541 148 -------KQLAEQVGVPFFGSGTEK---------DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI 211 (451)
T ss_pred -------HHHHHHcCCceecCCCCC---------CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc
Confidence 001112245555432111 1223344445444457899999999876532111 122233
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.-|.+++|+... .-.++....+.|.+ .+++.|+|+++.+.+.++ +..-.+...+|.|+-+.
T Consensus 212 ~P~E~llVvDam--~GQdA~~~A~aF~e-~l~itGvIlTKlDGdaRG--------GaALS~~~~tg~PIkFi 272 (451)
T COG0541 212 NPDETLLVVDAM--IGQDAVNTAKAFNE-ALGITGVILTKLDGDARG--------GAALSARAITGKPIKFI 272 (451)
T ss_pred CCCeEEEEEecc--cchHHHHHHHHHhh-hcCCceEEEEcccCCCcc--------hHHHhhHHHHCCCeEEE
Confidence 457788887643 33455566666665 467789999997776655 45667778888876543
No 68
>PRK10867 signal recognition particle protein; Provisional
Probab=99.60 E-value=3.6e-15 Score=154.67 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=149.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.+.|+++....+..|| +...++..|+-... .-.+.-.++ ..+.+.+.+++.|..+.+.....
T Consensus 20 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~--~~~~~~~~~-----~~~~~~~~v~~el~~~l~~~~~~ 92 (433)
T PRK10867 20 GRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAV--GQEVLKSLT-----PGQQVIKIVNDELVEILGGENSE 92 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh--hccccccCC-----cHHHHHHHHHHHHHHHhCCCcce
Confidence 445778888999999988888777 66777777753221 111111111 25667788888887765432222
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~~~~~~~l~~~~~~~ 228 (516)
+.+. .+.+.+|.++ |.+|+||||++++||.+|++. |++|++||+|++.+.....+.
T Consensus 93 ~~~~----------------~~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~------ 149 (433)
T PRK10867 93 LNLA----------------AKPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK------ 149 (433)
T ss_pred eeec----------------CCCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH------
Confidence 2221 1123467776 899999999999999999998 999999999999875321110
Q ss_pred ccCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhh
Q 010156 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQV 302 (516)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~--~~~~----~~~~ 302 (516)
......|+.+++.+... .......+.++......||+|||||++.... .... +...
T Consensus 150 ---------~~a~~~gv~v~~~~~~~---------dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~ 211 (433)
T PRK10867 150 ---------TLGEQIGVPVFPSGDGQ---------DPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA 211 (433)
T ss_pred ---------HHHhhcCCeEEecCCCC---------CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh
Confidence 00112355555433111 1122333344333336899999999996531 1111 1112
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
...+.+++|+.+.. -.++.+..+.+.+ .+++.|+|+|+.+.+.++ +.+-.+...++.|+.+.
T Consensus 212 v~p~evllVlda~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~fi 273 (433)
T PRK10867 212 VNPDEILLVVDAMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKFI 273 (433)
T ss_pred hCCCeEEEEEeccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 24567788887632 3445555555554 456789999997654432 45777888889887653
No 69
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.56 E-value=1.1e-14 Score=151.00 Aligned_cols=244 Identities=19% Similarity=0.243 Sum_probs=145.3
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.+.|++++...+..|| +...++..|+-... + -.+. .+....+.+.+.+.+.|..+.+.....
T Consensus 19 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~-~-~~~~-----~~~~~~~~~~~~v~~eL~~~l~~~~~~ 91 (428)
T TIGR00959 19 GTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKAL-G-QEVL-----KSLSPGQQFIKIVHEELVAILGGENAS 91 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhc-c-cccc-----ccCCcHHHHHHHHHHHHHHHhCCCCcc
Confidence 346899999999999999888887 66777777742210 0 0111 111225678888888887764422111
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCCCCCCccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLL 228 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~~~~~~~~l~~~~~~~ 228 (516)
+.+. .+. ..|.+++|.+|+||||++++||.+|+ +.|++|++||+|.+.+.....+..
T Consensus 92 ~~~~----------------~~~-p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~----- 149 (428)
T TIGR00959 92 LNLA----------------KKP-PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKV----- 149 (428)
T ss_pred cccC----------------CCC-CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHH-----
Confidence 1110 111 24555559999999999999999987 689999999999988753211100
Q ss_pred ccCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhhh----hhhh
Q 010156 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQV 302 (516)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~--~~~~~----~~~~ 302 (516)
.....++.++..+.. ........+.++......||+||||||+... +..+. +...
T Consensus 150 ----------~a~~~gvp~~~~~~~---------~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~ 210 (428)
T TIGR00959 150 ----------LGQQVGVPVFALGKG---------QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI 210 (428)
T ss_pred ----------HHHhcCCceEecCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh
Confidence 001123333332211 1111223333333333789999999999653 11111 1112
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
...+.+++|+.+. .-.++.+..+.+.+ .+++.|+|+|+.+.+.++ +.+..+...++.|+.+.
T Consensus 211 ~~p~e~lLVvda~--tgq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~fi 272 (428)
T TIGR00959 211 LNPDEILLVVDAM--TGQDAVNTAKTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKFI 272 (428)
T ss_pred hCCceEEEEEecc--chHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 3357788888764 23455555555542 345689999997644432 45778888899887764
No 70
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.55 E-value=1.9e-15 Score=146.47 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=75.4
Q ss_pred CcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEe-cCeeEEEEcCCCCccccchhh
Q 010156 433 IKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPM-GNYAVSITWPDGFSQVVCLIL 511 (516)
Q Consensus 433 ~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~-~~~~l~i~w~Dgh~s~y~~~~ 511 (516)
..-+++.|.|+.. ..|+..||||||||+.|++++++.|++.+..++..+.|.++.++ +...|.|.|+|||.|.||++|
T Consensus 25 ~~iv~v~~~d~~~-~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~s~Fpl~w 103 (407)
T KOG3888|consen 25 SHIVQVPWFDRKS-LTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHHSQFPLQW 103 (407)
T ss_pred cceEeecccCCCc-ccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCcccCCHHH
Confidence 4567888999998 99999999999999999999999999999999999999999988 344799999999999999999
Q ss_pred hhcC
Q 010156 512 FHSK 515 (516)
Q Consensus 512 L~~~ 515 (516)
|+.|
T Consensus 104 lker 107 (407)
T KOG3888|consen 104 LKER 107 (407)
T ss_pred HHhh
Confidence 9976
No 71
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.52 E-value=2.6e-14 Score=147.31 Aligned_cols=244 Identities=12% Similarity=0.107 Sum_probs=145.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.+.|++++...+..|| +...|+..|.-... + .. +. .+....+.+.+.+.+.|..+.+-....
T Consensus 20 ~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~-~-~~----~~-~~~~~~~~v~~~v~~~L~~~l~~~~~~ 92 (429)
T TIGR01425 20 TVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAIN-L-EE----MA-SGLNKRKMIQHAVFKELCNLVDPGVEA 92 (429)
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-c-cc----cc-cccCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 456899999999999999888887 66788887753321 0 11 11 122235678888888888754322111
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
+... .+.+.+|+++ |.+|+||||++++||.+|++.|++|++|++|+++++....+...
T Consensus 93 ~~~~----------------~~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~----- 150 (429)
T TIGR01425 93 FTPK----------------KGKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQN----- 150 (429)
T ss_pred cccc----------------CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHH-----
Confidence 1110 1224588887 89999999999999999999999999999999986432211100
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---h---hhhhc
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---T---LCQVV 303 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~---~---~~~~~ 303 (516)
....++.+..... .........+.++.+....||+||||||+....... . .....
T Consensus 151 ----------a~~~~vp~~~~~~---------~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~ 211 (429)
T TIGR01425 151 ----------ATKARIPFYGSYT---------ESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI 211 (429)
T ss_pred ----------hhccCCeEEeecC---------CCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc
Confidence 0011232222111 011112222223333336899999999986532111 1 11122
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..+.+++|+.+.. . .++....+.|.+ .+++.|+|+|+.+...++ +..-.+....|.|+.+.
T Consensus 212 ~p~e~lLVlda~~-G-q~a~~~a~~F~~-~~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 212 QPDNIIFVMDGSI-G-QAAEAQAKAFKD-SVDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIFI 272 (429)
T ss_pred CCcEEEEEecccc-C-hhHHHHHHHHHh-ccCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEEE
Confidence 3467788877543 2 223344455554 245689999997765443 34556777778776643
No 72
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.50 E-value=4.3e-13 Score=132.09 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=102.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+++|+|+ |++|+||||++++||..+++.|++|++||+|+++.... ..+.. .....++.+++.+
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~------~ql~~---------~~~~~~i~~~~~~ 134 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI------EQLEE---------WAKRLGVDVIKQK 134 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHH------HHHHH---------HHHhCCeEEEeCC
Confidence 35789999 89999999999999999999999999999998654210 00000 0011134444332
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhh------hhhc------CCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~------~~~~------~~d~viiV~~p~~~s~ 319 (516)
...+ ....+...+.....++||+|||||||........+ .... ..+.+++|+... ...
T Consensus 135 ~~~d---------p~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~ 204 (272)
T TIGR00064 135 EGAD---------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQ 204 (272)
T ss_pred CCCC---------HHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCH
Confidence 2111 11111111222122789999999999764211110 0111 268888998886 556
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.++.++....+.. ++.|+|+|+++..... +..-.+...++.|+.+.
T Consensus 205 ~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~~ 250 (272)
T TIGR00064 205 NALEQAKVFNEAV--GLTGIILTKLDGTAKG--------GIILSIAYELKLPIKFI 250 (272)
T ss_pred HHHHHHHHHHhhC--CCCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 6666655545444 4579999997654332 45666777778876654
No 73
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.47 E-value=1.8e-13 Score=106.96 Aligned_cols=72 Identities=43% Similarity=0.730 Sum_probs=65.3
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEE
Q 010156 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (516)
Q Consensus 77 ~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v 150 (516)
+++|+++|++|+||+++.|++++|+|++|.+++ +++.|.|++++++|+..+.+.++++++|.+++|+.+++|
T Consensus 1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~--~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEG--GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECT--CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 578999999999999999999999999999998 899999999999999999999999999999999988865
No 74
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.47 E-value=1.5e-13 Score=142.89 Aligned_cols=241 Identities=16% Similarity=0.170 Sum_probs=147.0
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.++|++|+...+..|| +...|+..|.-... + -. + ..+....+.+.+.+.+.|..+.+.....
T Consensus 16 ~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~-~-~~----~-~~~~~~~~~~~~~v~~~L~~~l~~~~~~ 88 (437)
T PRK00771 16 SRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERAL-E-EE----P-PKGLTPREHVIKIVYEELVKLLGEETEP 88 (437)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-c-cc----c-cccCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 456899999999999999888888 66677777652211 1 01 1 1233446677778888887654322111
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
.. .+..+.+|.++ |.+|+||||++++||..|.+.|++|++||+|.+.+.....+.. +
T Consensus 89 ~~-----------------~~~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~---l-- 145 (437)
T PRK00771 89 LV-----------------LPLKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ---L-- 145 (437)
T ss_pred cc-----------------cCCCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH---H--
Confidence 10 11224577777 8999999999999999999999999999999987642111100 0
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhc
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVV 303 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~ 303 (516)
....++.+.... ........+.+.++.. ..+|+|||||++....... ......
T Consensus 146 ----------a~~~gvp~~~~~---------~~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~ 204 (437)
T PRK00771 146 ----------AEKIGVPFYGDP---------DNKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAV 204 (437)
T ss_pred ----------HHHcCCcEEecC---------CccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHh
Confidence 000122222111 0112233445555444 4579999999986542111 122244
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..|.+++|+.+... .++.+..+.+.+ .+++.|+|+|+.+.+.++ +.+-.+...++.|+.+.
T Consensus 205 ~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~fi 265 (437)
T PRK00771 205 KPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKFI 265 (437)
T ss_pred cccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEEE
Confidence 56888888887553 233344444443 256789999997654433 46667788888887654
No 75
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.46 E-value=1.5e-12 Score=116.66 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=85.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC-CCCCCCcccccccCCCCCceeeeccCCceE--EcCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKL--VSFGF 252 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~l~v--l~~~~ 252 (516)
|.+. ||||+||||++.+++..+.+.|.||+++|+|++.+.. ..+++.... ..+.. ..+++.+ ++.+.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIR------MERHA---SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceE------hhhee---cCCCceEEEcCCcC
Confidence 4555 9999999999999999999999999999999865432 112221111 01111 1234443 33221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (516)
..... .......++ .++..+|||||||| +|.+.....+ +..+|.+++|++|+...-..+.+. .+++..
T Consensus 72 ~~~~~----~~~~~~~~~----~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~ 139 (148)
T cd03114 72 FLGGL----SRATPEVIR----VLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDDIQAIKA-GIMEIA 139 (148)
T ss_pred ccccc----chhHHHHHH----HHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhHHHHhhh-hHhhhc
Confidence 11110 011122232 22225899999999 6666544433 557899999999995555444444 445444
Q ss_pred CCCEEEEEEecc
Q 010156 333 KVPCIAVVENMC 344 (516)
Q Consensus 333 ~~~~~gvV~N~~ 344 (516)
+ -+++|++
T Consensus 140 ~----~~~~~k~ 147 (148)
T cd03114 140 D----IVVVNKA 147 (148)
T ss_pred C----EEEEeCC
Confidence 3 3677874
No 76
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.45 E-value=7.1e-13 Score=120.26 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=89.8
Q ss_pred cceeeccCccccCCCCCCC--CCc-cCCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEec---CCCeEEEEEEeC
Q 010156 48 KSIWVSHRPSIFGCGSTNA--TSV-EVSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINE---ALGEVSFRLELT 121 (516)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~---~~~~v~v~l~lt 121 (516)
++.|+.-+-.++-+..... ..+ .+..+.++++|+++|++|+||+++.|||++|+|+++.+++ ++++|.|.|++|
T Consensus 43 ~~~r~~~~~~da~g~~~~~~~~~~~~~~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt 122 (174)
T TIGR03406 43 NMARIDGKDADALGKEPPPPLDLPENADGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLT 122 (174)
T ss_pred eEEEecCcChhhhcCCCCCcCCCCcCccccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeC
Confidence 4566665554443221111 111 1345677899999999999999999999999999999987 223899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCeeeeEEeeccCCCC
Q 010156 122 TPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPAR 158 (516)
Q Consensus 122 ~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~~p~~ 158 (516)
.++|++.+.+.+++++++.+++|+++++|++.++|++
T Consensus 123 ~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp~W 159 (174)
T TIGR03406 123 APGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDPPW 159 (174)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecCCC
Confidence 9999999999999999999999999999999999986
No 77
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.44 E-value=3e-13 Score=105.79 Aligned_cols=77 Identities=56% Similarity=0.971 Sum_probs=59.7
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCC
Q 010156 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGR 358 (516)
Q Consensus 282 D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~ 358 (516)
||+|||+|||+++..+++.+....+++++|++|+..+..+++|.++++++.+++++|+|.||..+.+. ++..+.|++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGK 80 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCC
Confidence 89999999999999999988889999999999999999999999999999999999999999988773 455555654
No 78
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.41 E-value=1.2e-13 Score=129.13 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred eeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCCCccccchhhhhc
Q 010156 446 EFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQVVCLILFHS 514 (516)
Q Consensus 446 ~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dgh~s~y~~~~L~~ 514 (516)
...++++||||||+|++|+|-.|.||..|..++|.+|.|..+.+++. .|+|+|+|||.|-|+++|+-.
T Consensus 17 ~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~skydl~~i~~ 84 (371)
T KOG3889|consen 17 KLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQSKYDLGNIIR 84 (371)
T ss_pred eEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccccccchhHHhh
Confidence 47789999999999999999999999999999999999999999876 599999999999999999853
No 79
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.38 E-value=1.3e-11 Score=113.74 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=99.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
++.+. |+.|+||||++.++|..+++.|++|+++|+|++.+.....+.. .....++.+++.....
T Consensus 2 ~~~~~-G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~ 65 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV---------------LGEQVGVPVFEEGEGK 65 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH---------------hcccCCeEEEecCCCC
Confidence 34555 9999999999999999999999999999999987653321110 0012245555532111
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--hh-hh---hhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-TL---CQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~--~~-~~---~~~~~~d~viiV~~p~~~s~~~~~~~~~~ 328 (516)
.....+.+.+....+.+||+||||+|+..... .+ .+ ......+.+++|+.+. ........+.+.
T Consensus 66 ---------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~ 135 (173)
T cd03115 66 ---------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAF 135 (173)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHH
Confidence 12222333333333378999999999975311 11 11 1112368888898884 333444444444
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 329 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
.+..+ +.++|+|+++...+. +..-.+....+.|+.+
T Consensus 136 ~~~~~--~~~viltk~D~~~~~--------g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 136 NEALG--ITGVILTKLDGDARG--------GAALSIRAVTGKPIKF 171 (173)
T ss_pred HhhCC--CCEEEEECCcCCCCc--------chhhhhHHHHCcCeEe
Confidence 44445 589999997644322 2333488888887764
No 80
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.33 E-value=4.6e-11 Score=120.13 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=100.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
+++|+++ |..|+||||++.+||..++..|++|+++|+|+++......+ .......++.+++...
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql---------------~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQL---------------QVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHH---------------HHHHHHcCceEEEeCC
Confidence 4689988 69999999999999999999999999999999764311000 0001122445554321
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhh------hcCCCeEEEEeCCCcchHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQ------VVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~------~~~~------~~~~d~viiV~~p~~~s~~ 320 (516)
..+. .....+.+.... ...||+|||||||....... .+.. -...+..++|+... ....
T Consensus 178 ~~dp--------a~~v~~~l~~~~-~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g~~ 247 (318)
T PRK10416 178 GADP--------ASVAFDAIQAAK-ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TGQN 247 (318)
T ss_pred CCCH--------HHHHHHHHHHHH-hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CChH
Confidence 1111 011122222222 27899999999997531110 0000 01346677887777 3555
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
++.++....+. .++.|+|+|+.+..... +..-.+...++.|+.+.
T Consensus 248 ~~~~a~~f~~~--~~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 248 ALSQAKAFHEA--VGLTGIILTKLDGTAKG--------GVVFAIADELGIPIKFI 292 (318)
T ss_pred HHHHHHHHHhh--CCCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 55555444333 35679999997643322 45666677788887654
No 81
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5e-12 Score=117.86 Aligned_cols=178 Identities=19% Similarity=0.163 Sum_probs=107.0
Q ss_pred ccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC---CCCcccccccCCCC--CceeeeccC
Q 010156 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPEK--RTIIPTEYL 243 (516)
Q Consensus 169 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~---l~~~~~~~~~~~~~--~~i~~~~~~ 243 (516)
+.......-|.+|||||||||.++.||..||+-+.+||+|..||.++.++.+ |+.......+.... -.|.|. .
T Consensus 14 l~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~ 91 (323)
T KOG2825|consen 14 LEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--V 91 (323)
T ss_pred hhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCc--h
Confidence 3344456677889999999999999999999999999999999988655443 22222111110000 001110 0
Q ss_pred CceEEcC--------------CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-----------
Q 010156 244 GVKLVSF--------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT----------- 298 (516)
Q Consensus 244 ~l~vl~~--------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~----------- 298 (516)
++.-++- |...+-...++|-+..-.+.+++..++.-+||.||+||.|.--...+.
T Consensus 92 e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lg 171 (323)
T KOG2825|consen 92 EMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLG 171 (323)
T ss_pred hhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHH
Confidence 0110110 000000011122222223344444455568999999999941100000
Q ss_pred ----------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 010156 299 ----------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (516)
Q Consensus 299 ----------------------------------------------~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (516)
...-..+...++|+.++..|+..+.|+++.+.+.
T Consensus 172 Kl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~ 251 (323)
T KOG2825|consen 172 KLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQ 251 (323)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhc
Confidence 0000125677899999999999999999999999
Q ss_pred CCCEEEEEEecccccC
Q 010156 333 KVPCIAVVENMCHFDA 348 (516)
Q Consensus 333 ~~~~~gvV~N~~~~~~ 348 (516)
+++...+|+|..-+..
T Consensus 252 ~idthnIIVNQLL~~~ 267 (323)
T KOG2825|consen 252 GIDTHNIIVNQLLFPD 267 (323)
T ss_pred CCcccceeeeeccCCC
Confidence 9999999999876543
No 82
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.30 E-value=8.9e-12 Score=106.62 Aligned_cols=111 Identities=31% Similarity=0.348 Sum_probs=68.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC---
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--- 252 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~--- 252 (516)
|++. +|||+||||++.++|..|+++|++|++||+|+ +++...++... .++..++-.+.
T Consensus 2 i~~~-GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~----------------~~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAIT-GKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV----------------GEIKLLLVMGMGRP 62 (116)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc----------------CCceEEEEeccccc
Confidence 4454 89999999999999999999999999999999 22222211110 01111111111
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEE
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV 311 (516)
...+.....+ ..+++++..+....|||+|+||++|+....... ...+|.+++|
T Consensus 63 ~~~g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCCCCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 1111111111 256666666544899999999999987654433 2345666655
No 83
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.30 E-value=3.9e-11 Score=114.73 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~ 219 (516)
|++++.|.++||||||||+|++||.+|+++|++|++||+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 578999999999999999999999999999999999999999875543
No 84
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.28 E-value=4.3e-11 Score=98.41 Aligned_cols=94 Identities=40% Similarity=0.608 Sum_probs=74.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (516)
|++. +++|+||||++.+||..|++.|++|+++|
T Consensus 2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4444 77799999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHH---HHc
Q 010156 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM---FSK 331 (516)
Q Consensus 256 ~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~---l~~ 331 (516)
|+||+|++++.+.... .......+|.+++|+.++..+.....+..+. ...
T Consensus 35 --------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~ 88 (99)
T cd01983 35 --------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAI 88 (99)
T ss_pred --------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhc
Confidence 8999999999876541 0122456799999999999999988887543 333
Q ss_pred CCCCEEEEEEe
Q 010156 332 LKVPCIAVVEN 342 (516)
Q Consensus 332 ~~~~~~gvV~N 342 (516)
.+....++++|
T Consensus 89 ~~~~~~~vv~N 99 (99)
T cd01983 89 EGLRPVGVVVN 99 (99)
T ss_pred cCCceEEEEeC
Confidence 34556777776
No 85
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.21 E-value=1.6e-10 Score=105.76 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=88.9
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc-c---ccCCCCCceeeeccCCceEEcCCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-L---EMNPEKRTIIPTEYLGVKLVSFGFS 253 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~-~---~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (516)
|++..+|+||||++++||..|+++|+||.+++.-..+..- ...+... . ........+. .+ ....+..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~---~d~d~~~i~~~~~~~~~~~~~~-----~~-~~~~~~~ 72 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEK---TNSDALLLQNISGTALDWDEVN-----PY-AFALPLS 72 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCC---CchHHHHHHHHcCCCCchhccC-----Ce-eeCCCCC
Confidence 5678999999999999999999999999997544332110 0000000 0 0000000000 00 0000000
Q ss_pred CCcccccCC-ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 254 GQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 254 ~~~~~~~~~-~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
........+ +.....+.+.++.+. ++||+||||+|++.... ...+... -.+.+++|+.+...++..+....
T Consensus 73 p~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~-~~~~vilV~~~~~~~~~~~~~~~ 150 (166)
T TIGR00347 73 PHIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKL-LQLPVILVVRVKLGTINHTLLTV 150 (166)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHH-hCCCEEEEECCCCcHHHHHHHHH
Confidence 000001101 111122344444443 78999999999874421 1111111 13568999999999999999999
Q ss_pred HHHHcCCCCEEEEEEe
Q 010156 327 RMFSKLKVPCIAVVEN 342 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N 342 (516)
+.+++.+.++.|+|+|
T Consensus 151 ~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 151 EHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHCCCCeEEEEeC
Confidence 9999999999999998
No 86
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.21 E-value=2.5e-10 Score=115.38 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=100.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.++|+|+ |.+|+||||+++.||..|..+|++|+++|+|++....... +.. .....|+.++...
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQ------Lk~---------yae~lgipv~v~~- 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQD---------YVKTIGFEVIAVR- 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH------HHH---------HhhhcCCcEEecC-
Confidence 4688888 6699999999999999999999999999999987321100 000 0011234443211
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
....+...+..+.. ..+||+|||||++....... .......-+.+++|+.+. ....++...+
T Consensus 304 --------d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d~~~i~ 371 (436)
T PRK11889 304 --------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKDMIEII 371 (436)
T ss_pred --------CHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHHHHHHH
Confidence 11112223333321 13699999999986432111 111112235667776553 3445667777
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+.+.. +++-++|+++.+-.... +.+-.+...++.|+.+.
T Consensus 372 ~~F~~--~~idglI~TKLDET~k~--------G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 372 TNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 410 (436)
T ss_pred HHhcC--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 77776 45679999996644322 56677788888887754
No 87
>PRK13768 GTPase; Provisional
Probab=99.18 E-value=1.5e-10 Score=113.27 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
|+++|.|+ |+||+||||++.+++.+|+..|++|++||+|++...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 45666666 7799999999999999999999999999999986544
No 88
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.17 E-value=1.7e-10 Score=110.77 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=108.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc-ccCCCCCceeeeccCCceEEcCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
|.|++.-.|+|||+++++|+..|.++|++|..+--=..+..- .....+..+. ........ ......+ ........
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~-~~~~~d~~~~~~~~~~~~~--~~~~~~~-~~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEE-TDRNGDALALQRLSGLPLD--YEDVNPY-RFEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCC-CCCcHHHHHHHHHcCCCCC--hhhcCce-eeCCCCCH
Confidence 678889999999999999999999999999885421111100 0000000000 00000000 0000001 11100000
Q ss_pred CcccccCC-ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---hhhhhc--CCCeEEEEeCCCcchHHHHHHHHHH
Q 010156 255 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRM 328 (516)
Q Consensus 255 ~~~~~~~~-~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~---~~~~~~--~~d~viiV~~p~~~s~~~~~~~~~~ 328 (516)
.-.....+ ......+.+.++.+. ++||+||||++++...... ..+.+. --..+++|+.++..++..+...++.
T Consensus 78 ~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 78 HLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence 00000000 111123334444443 7899999999987532211 011010 1134788998888888888888888
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCC
Q 010156 329 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (516)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (516)
++..+.++.|+|+|++.... . ...++..+.+.+.+|.++++.+|+
T Consensus 157 l~~~~~~i~gvIlN~~~~~~-~----~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPEP-G----LRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHCCCCeEEEEEccCCCcc-h----hHHHHHHHHHHHHcCCCeEEecCC
Confidence 88888999999999965431 1 122346778888899999999997
No 89
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.16 E-value=2.3e-10 Score=95.24 Aligned_cols=81 Identities=27% Similarity=0.590 Sum_probs=75.3
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEeeccCC
Q 010156 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP 156 (516)
Q Consensus 77 ~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~~p 156 (516)
+++|.++|++|+||+++.+++++|+|+++.++++ +.+.|.++++.|+|+..+.+++.+++++..++|+++++|++...+
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 5789999999999999999999999999999842 689999999999999999999999999999999999999988776
Q ss_pred CC
Q 010156 157 AR 158 (516)
Q Consensus 157 ~~ 158 (516)
+.
T Consensus 82 ~~ 83 (99)
T TIGR02945 82 PW 83 (99)
T ss_pred CC
Confidence 64
No 90
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=1.7e-09 Score=109.14 Aligned_cols=164 Identities=17% Similarity=0.200 Sum_probs=96.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.++|+|++. .|+||||++++||..+.++|++|++|++|+++......+ .... ...++.+...
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQL------k~ya---------e~lgvpv~~~-- 267 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF------QGYA---------DKLDVELIVA-- 267 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHH------HHHh---------hcCCCCEEec--
Confidence 578888855 599999999999999999999999999999975321110 0000 0112222211
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~--~~~~----~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
.....+...++.+.. .++||+|||||++.... ..+. .......+.+++|..+. ....++...+
T Consensus 268 -------~dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~i~ 336 (407)
T PRK12726 268 -------TSPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMTIL 336 (407)
T ss_pred -------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHHHH
Confidence 011112223333321 15799999999986421 1111 11112234555665553 3444455555
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+.+.. +++-|+|+++.+-.... +.+-.+....|.|+.+.
T Consensus 337 ~~f~~--l~i~glI~TKLDET~~~--------G~~Lsv~~~tglPIsyl 375 (407)
T PRK12726 337 PKLAE--IPIDGFIITKMDETTRI--------GDLYTVMQETNLPVLYM 375 (407)
T ss_pred HhcCc--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 55554 45679999996644332 56677788888887654
No 91
>PRK14974 cell division protein FtsY; Provisional
Probab=99.06 E-value=2.2e-09 Score=108.30 Aligned_cols=246 Identities=20% Similarity=0.261 Sum_probs=131.5
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEe
Q 010156 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (516)
Q Consensus 75 ~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~ 151 (516)
.++++|.+.|.++..-.+..|| +...++..++-.-. + -... ......+.+...+++.+..+.+... .++
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~-~-----~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~-~~~ 129 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLV-G-----KKVK-RGEDVEEIVKNALKEALLEVLSVGD-LFD 129 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-h-----ccCC-CccCHHHHHHHHHHHHHHHHhCCCc-chh
Confidence 6788888888888777776666 44445554422110 0 0111 1112234455566666655422111 000
Q ss_pred eccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccC
Q 010156 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (516)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~ 231 (516)
+. ..+ ...+.+++|+|+ |..|+||||++.+||..|...|++|+++++|.+.......+.
T Consensus 130 ~~---------~~~--~~~~~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~--------- 188 (336)
T PRK14974 130 LI---------EEI--KSKGKPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE--------- 188 (336)
T ss_pred hh---------hhh--hccCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH---------
Confidence 00 000 011234678877 899999999999999999999999999999987543211100
Q ss_pred CCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-hh----hhhcCC
Q 010156 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-TL----CQVVPL 305 (516)
Q Consensus 232 ~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~-~~~~-~~----~~~~~~ 305 (516)
......|+.+++.... ......+.+.++.....+||+|||||++... +..+ .. ......
T Consensus 189 ------~~a~~lgv~v~~~~~g---------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p 253 (336)
T PRK14974 189 ------EHAERLGVKVIKHKYG---------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP 253 (336)
T ss_pred ------HHHHHcCCceecccCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC
Confidence 0001123333332111 1112223333333223689999999998653 1111 11 111235
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+.+++|+.... . .++....+.+.+ .+++.|+|+|+.+..... +..-.+....+.|+.+.
T Consensus 254 d~~iLVl~a~~-g-~d~~~~a~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~i 312 (336)
T PRK14974 254 DLVIFVGDALA-G-NDAVEQAREFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILFL 312 (336)
T ss_pred ceEEEeecccc-c-hhHHHHHHHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 77777776633 3 233333444443 234579999997654432 34555666678777654
No 92
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.05 E-value=6.2e-10 Score=98.30 Aligned_cols=69 Identities=25% Similarity=0.494 Sum_probs=65.3
Q ss_pred CCCCCCC-CCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEeeccCCCC
Q 010156 87 IIDPDFG-TDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPAR 158 (516)
Q Consensus 87 V~DPel~-~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~~p~~ 158 (516)
|.|||++ +||+++|+|++|.+++ +.+.|.|++|.++||..+.|+++++++|.+. |+.+++|++.+.|+.
T Consensus 1 v~DPEi~~~sIvdLG~Vr~V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~W 70 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPW 70 (146)
T ss_pred CcCCCCCCCCchhcCCeeEEEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCC
Confidence 7899999 8999999999999998 6899999999999999999999999999986 999999999999875
No 93
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.04 E-value=2.6e-09 Score=109.59 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=92.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH-HHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~L-a~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
++|+|+ |.+|+||||++.+||..+ ...|++|+++|+|+++....+.+.. .....++.+.+.
T Consensus 224 ~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~---------------yAe~lgvp~~~~-- 285 (432)
T PRK12724 224 KVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKR---------------YADTMGMPFYPV-- 285 (432)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHH---------------HHHhcCCCeeeh--
Confidence 456665 999999999999999876 5779999999999988643221100 001112222210
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhhh-hhhhc------CCCeEEEEeCCCcchHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT-LCQVV------PLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~--~~~~~-~~~~~------~~d~viiV~~p~~~s~~~~~ 323 (516)
.........+ ...+||+|||||++... ...+. +..+. .-...++|+.+.. ...++.
T Consensus 286 ----------~~~~~l~~~l----~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~~ 350 (432)
T PRK12724 286 ----------KDIKKFKETL----ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTL 350 (432)
T ss_pred ----------HHHHHHHHHH----HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHHH
Confidence 0111222222 23689999999976432 11111 11111 1124556655543 445566
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
...+.+...+ +-|+|+++.+-.... +.+-.+...++.|+.+.
T Consensus 351 ~~~~~f~~~~--~~glIlTKLDEt~~~--------G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 351 TVLKAYESLN--YRRILLTKLDEADFL--------GSFLELADTYSKSFTYL 392 (432)
T ss_pred HHHHHhcCCC--CCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 7777775544 569999996644322 45667777888887653
No 94
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.03 E-value=4.7e-09 Score=111.22 Aligned_cols=202 Identities=19% Similarity=0.213 Sum_probs=113.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
|+.|.|++.++|+||||++++|+.+|+++|++|..+...+.... ..+.. .+......+++...
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d--------~~~~~------~~~g~~~~~ld~~~--- 65 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYID--------PAYHT------AATGRPSRNLDSWM--- 65 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCccc--------HHHHH------HHhCCCcccCCcee---
Confidence 56899999999999999999999999999999999988543211 00000 00000011222111
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchH--HH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAF--ID 321 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s~--~~ 321 (516)
.. ...+.+.+..+. ..||++||....|+-+ ....++.... .-+++|+.+...+. ..
T Consensus 66 -------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~ 132 (451)
T PRK01077 66 -------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAA 132 (451)
T ss_pred -------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHH
Confidence 11 233444444443 6899999987744421 1122222222 34667777665332 22
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHh-hcccCCCceEEeCCCCH
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDSGMPEVAADPCGE 400 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~-~a~~~g~pl~~~~p~s~ 400 (516)
+...+..+. .++++.|+|+|++.... + .....+..+..|+|+++.||+++.+. .....|. +.......
T Consensus 133 l~~~~~~~~-~~i~i~GvI~N~v~~~~----~----~~~l~~~l~~~gipvLG~IP~~~~l~~p~r~lgl--~~~~e~~~ 201 (451)
T PRK01077 133 LVLGFATFD-PDVRIAGVILNRVGSER----H----YQLLREALERCGIPVLGALPRDAALALPERHLGL--VQASEHGD 201 (451)
T ss_pred HHHHHHHhC-CCCCEEEEEEECCCChh----H----HHHHHHHHHhcCCCEEEEeeCCcccCCCccccCC--CCcccccc
Confidence 333333332 26789999999974321 0 12334445558999999999998664 2222232 22111233
Q ss_pred HHHHHHHHHHHHHHH
Q 010156 401 VANTFQDLGVCVVQQ 415 (516)
Q Consensus 401 ~~~~~~~La~~i~~~ 415 (516)
..+.+..+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~ 216 (451)
T PRK01077 202 LEARLDALADLVEEH 216 (451)
T ss_pred HHHHHHHHHHHHHHc
Confidence 455566666655544
No 95
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.03 E-value=1.9e-09 Score=107.25 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=55.0
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccc----ccCCchHHHHHHHhCCCeEEecCCC
Q 010156 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYY----PFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
..+++|+.|+..++.++.++++.++..+.++.++|+|++........++ ..++..++++.+.++...+..+|..
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 4579999999999999999999999999999999999986542211111 1234566777777765556667754
No 96
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.00 E-value=1.4e-08 Score=89.46 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=93.7
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCCcc
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~~ 257 (516)
|..++| +|||+++..|+..|.++|.+|..+....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC--------------------------------------------
Confidence 444677 99999999999999999999999987764
Q ss_pred cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 010156 258 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (516)
Q Consensus 258 ~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (516)
+|++||+.++|+.. .....+.... ..+++|++++..++.++...++.++.
T Consensus 39 -----------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~ 94 (134)
T cd03109 39 -----------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARI 94 (134)
T ss_pred -----------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHh
Confidence 46777777665431 1111211221 24788999998899988999999999
Q ss_pred CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecC
Q 010156 332 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (516)
Q Consensus 332 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (516)
.++.+.|++.|++..... .+ ....+.+.+.+|.|+++.||
T Consensus 95 ~g~~i~gvi~N~~~~~~~-----~~-~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 95 KGIILNGVLGNVIVEKEG-----LA-TLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred cCCceeEEEEccCCCccc-----hh-hhhHHHHHHhcCCCEEEeCC
Confidence 999999999999654321 11 13578889999999999887
No 97
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.97 E-value=6.8e-09 Score=109.01 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=91.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHC--CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (516)
..++|+|+ |.+|+||||++.+||..+++. |++|.+|++|.+.......+. ... ...++.+..
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk------~ya---------~iLgv~v~~ 412 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH------SYG---------RQLGIAVHE 412 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH------Hhh---------cccCceeEe
Confidence 35789998 779999999999999998875 589999999997743211100 000 001221111
Q ss_pred CCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-----h-hhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-----T-LCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-----~-~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
. ... ..+..++..+ .+||+|||||++....... . +.... ....++|+... .+..+..
T Consensus 413 a---------~d~----~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAt-ss~~Dl~ 475 (559)
T PRK12727 413 A---------DSA----ESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPAN-AHFSDLD 475 (559)
T ss_pred c---------CcH----HHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECC-CChhHHH
Confidence 0 011 1233333333 5799999999985421111 0 10111 12223333322 3555666
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..++.+... +..|+|+|+++..... +.+-.+....+.|+.+.
T Consensus 476 eii~~f~~~--~~~gvILTKlDEt~~l--------G~aLsv~~~~~LPI~yv 517 (559)
T PRK12727 476 EVVRRFAHA--KPQGVVLTKLDETGRF--------GSALSVVVDHQMPITWV 517 (559)
T ss_pred HHHHHHHhh--CCeEEEEecCcCccch--------hHHHHHHHHhCCCEEEE
Confidence 677777664 4589999996543221 44556666777776543
No 98
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.97 E-value=3e-09 Score=111.26 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=92.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
.++|+|+ |.+||||||++++||..++ +.|++|++||+|+++...... +.... ...|+.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eq------L~~~a---------~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQ------LKTYA---------KIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHH------HHHHH---------HHhCCceEcc
Confidence 4588888 7799999999999999998 458999999999986421100 00000 0112222111
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h-hhhhhcC-C---CeEEEEeCCCcchHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVVP-L---TAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~-~~~~~~~-~---d~viiV~~p~~~s~~~~~ 323 (516)
. .... +...+..+ ..||+||||||+...... . .+..+.. + ..+++|+.. .....++.
T Consensus 285 ~---------~~~~----l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a-~~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPKE----LAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA-TTKYEDLK 348 (424)
T ss_pred C---------CHHh----HHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC-CCCHHHHH
Confidence 0 1111 22222222 579999999987543211 0 1111111 1 233444443 34556777
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
++++.+...++ -++|+++.+..... +.+-.+....|.|+.+.
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~~~--------G~i~~~~~~~~lPv~yi 390 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETSSL--------GSILSLLIESGLPISYL 390 (424)
T ss_pred HHHHHhCCCCC--CEEEEecccccccc--------cHHHHHHHHHCCCEEEE
Confidence 77788876554 58999996543221 35666777778876653
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.97 E-value=7.6e-09 Score=97.02 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=97.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
+++|+++ |-.||||||+++.||..+..+|++|.+|-+|.++..... .+. .....-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~e------QL~---------~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVE------QLK---------TYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHH------HHH---------HHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHH------HHH---------HHHHHhccccchhhc
Confidence 3688888 778999999999999999988999999999998743110 000 000112344433211
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
. ......+.+.++....++||+||||||+....... .......-+.+++|..+... ..++..+.
T Consensus 65 ~---------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~ 134 (196)
T PF00448_consen 65 E---------SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQAL 134 (196)
T ss_dssp T---------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHH
T ss_pred c---------hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHH
Confidence 1 11223344444433337899999999874321111 12223345667777666553 45555666
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
+..+..++ -++|+++.+...+. +.+-.+....+.|+.+
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPISY 172 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEEE
T ss_pred HHhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeEE
Confidence 66665554 48999996543322 4566677778876654
No 100
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=6.4e-08 Score=97.20 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
.+++|+|+ |++|+||||++.+|+..+.+.|++|.+|++|++.+.... +++....+.. ....+++.+.+.
T Consensus 33 ~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 102 (300)
T TIGR00750 33 NAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRSM 102 (300)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeeec
Confidence 45788888 999999999999999999999999999999997653221 1221111110 001234444433
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (516)
+.... +. .......++++.+...+||+|||||++ .+...... ...+|.++++..|.. ..++......+.
T Consensus 103 ~~~~~----~~--~~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~--~~el~~~~~~l~ 171 (300)
T TIGR00750 103 PTRGH----LG--GLSQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGT--GDDLQGIKAGLM 171 (300)
T ss_pred Ccccc----cc--chhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCc--cHHHHHHHHHHh
Confidence 22110 00 011223333333344789999999985 55444433 334577777765553 233333333332
Q ss_pred cCCCCEEEEEEecccc
Q 010156 331 KLKVPCIAVVENMCHF 346 (516)
Q Consensus 331 ~~~~~~~gvV~N~~~~ 346 (516)
+.+. -+|+|+++.
T Consensus 172 --~~~~-ivv~NK~Dl 184 (300)
T TIGR00750 172 --EIAD-IYVVNKADG 184 (300)
T ss_pred --hhcc-EEEEEcccc
Confidence 2332 488899764
No 101
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.83 E-value=3.6e-08 Score=97.00 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|+.... . .-+ .+...................+ ++-
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g-~Ds~~~~~aGa~~v~~~s~~~~-~~~--- 71 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDG-TDTGRHFDAGADVVYGLTDGEW-VAS--- 71 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCC-CCcHHHHHCCCcEEEEecCCeE-EEE---
Confidence 5789999775 9999999999999999999 8999999985421 1 000 0000000000011111111111 110
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCC-eEEEEeCCCcchHHHHHHHHHHHHc
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFIDVAKGVRMFSK 331 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d-~viiV~~p~~~s~~~~~~~~~~l~~ 331 (516)
..... +.+++..+. .+||+||||+++......+........| .++++..|+... +..+++.+++
T Consensus 72 -------~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d---~~~lve~~~~ 136 (274)
T PRK14493 72 -------GRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLD---TEDLVAALES 136 (274)
T ss_pred -------ecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccC---HHHHHHHHHh
Confidence 01122 334444333 5799999999997653333333344455 566677777766 4444454444
Q ss_pred C
Q 010156 332 L 332 (516)
Q Consensus 332 ~ 332 (516)
.
T Consensus 137 ~ 137 (274)
T PRK14493 137 Q 137 (274)
T ss_pred c
Confidence 3
No 102
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.83 E-value=7e-08 Score=99.32 Aligned_cols=161 Identities=13% Similarity=0.128 Sum_probs=94.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH----CCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (516)
+++|+++ |..||||||+++.||..+.. .|++|++|++|.+.......+..-. ..-|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a---------------~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYG---------------DIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHh---------------hcCCcceE
Confidence 4577776 88899999999999999874 5899999999998754322111000 00112111
Q ss_pred cCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhhcCCC-eEEEEeCCCcchHHH
Q 010156 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLT-AAVIVTTPQKLAFID 321 (516)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~------~~~~~~~d-~viiV~~p~~~s~~~ 321 (516)
.. .. ...+...+... .+||+|||||++........ .......+ ..++|+.++.. ..+
T Consensus 238 ~~------------~~-~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AI------------ES-FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred ee------------Cc-HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 10 01 12233333333 68999999999754321110 11111123 56666666543 455
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+.+.++.+... ++-|+|+++.+-.... +.+-.+....+.|+.+.
T Consensus 302 ~~~~~~~~~~~--~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 302 VKEIFHQFSPF--SYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSYV 345 (388)
T ss_pred HHHHHHHhcCC--CCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEEE
Confidence 55666666544 4569999996543322 45667777788877653
No 103
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.82 E-value=1.4e-07 Score=91.15 Aligned_cols=189 Identities=17% Similarity=0.139 Sum_probs=108.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCC-CCcc---ccc----ccCCCCCceeeeccC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV-SPEN---RLL----EMNPEKRTIIPTEYL 243 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l-~~~~---~~~----~~~~~~~~i~~~~~~ 243 (516)
|++.|-|++.-.|+|||++++.|+..|.++|.+|..+-. ........- +..+ .+. ......+.+.+
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP--i~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p---- 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP--VAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNP---- 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc--cccCCccCCCCCchHHHHHHHHhcCCCCCHHhccC----
Confidence 456799999999999999999999999999999998743 222111000 0000 000 00000000110
Q ss_pred CceEEcCCCCCCcccccCCc-cHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-----h-hhhhhcCCCeEEEEeCCCc
Q 010156 244 GVKLVSFGFSGQGRAIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----L-TLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~-----~-~~~~~~~~d~viiV~~p~~ 316 (516)
..+...... ...... ......+.+ +.+. .+||+|||++.+|+.... . ... ...-.-+++|+....
T Consensus 75 --~~~~~~~a~---~~~~~~i~~~~i~~~~-~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~-~~~~~pvilV~~~~l 146 (231)
T PRK12374 75 --IALSEEESS---VAHSCPINYTLMSNGL-ANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWV-VQEQLPVLMVVGIQE 146 (231)
T ss_pred --eecCCCcCh---HHcCCcCCHHHHHHHH-HHHH-hhCCEEEEECCCCcceeccCcccHHHHH-HHhCCCEEEEECCCc
Confidence 011111100 000000 112223333 3333 799999999998543211 1 111 112344677776666
Q ss_pred chHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 317 LAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 317 ~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
-++..+.-.++.+...++++.|+|+|++..... ...+..+.+.+..+.++++.||+.+
T Consensus 147 g~in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~ 204 (231)
T PRK12374 147 GCINHALLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLP 204 (231)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCC
Confidence 677777778888888899999999999753211 1123456677778999999999864
No 104
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=7.3e-09 Score=102.61 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=125.5
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEE
Q 010156 74 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (516)
Q Consensus 74 ~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v 150 (516)
...+..+...|++|+...|..|| +...+..+|+-.. ...--..+-.....+.+.+.+.|..+.+....
T Consensus 22 ~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i-------~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~-- 92 (483)
T KOG0780|consen 22 SIDETALNTMLKEICRALLESDVNPRLVKELRENIRKII-------NLEKLASGVNKRRIIQKAVFDELVKLLDPGKS-- 92 (483)
T ss_pred cchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh-------chhhhccccCHHHHHHHHHHHHHHHHhCCCCc--
Confidence 34566677788888888777766 3334444443211 11111233344666777788888765322111
Q ss_pred eeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 010156 151 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 230 (516)
Q Consensus 151 ~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~ 230 (516)
.+ ..-++.+.||.|+ +-.|+||||++..||+++.++|+||+||-+|........-+..
T Consensus 93 ---------~~-----~~~K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq------- 150 (483)
T KOG0780|consen 93 ---------AL-----QPKKGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ------- 150 (483)
T ss_pred ---------cc-----ccccCCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH-------
Confidence 11 1122334588888 8889999999999999999999999999999977542211110
Q ss_pred CCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcC
Q 010156 231 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVP 304 (516)
Q Consensus 231 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~~ 304 (516)
.....++.+..++...+ ......+-.+..+.++||+||+||....-... ........
T Consensus 151 --------nA~k~~iP~ygsyte~d---------pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~ 213 (483)
T KOG0780|consen 151 --------NATKARVPFYGSYTEAD---------PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK 213 (483)
T ss_pred --------HhHhhCCeeEecccccc---------hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC
Confidence 00111222222111111 11222333333344899999999987542111 11222233
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 010156 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (516)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (516)
-|.+++|.....- ..+....+.|++ .+.+.++|+++.+...++
T Consensus 214 Pd~vi~VmDasiG--Qaae~Qa~aFk~-~vdvg~vIlTKlDGhakG 256 (483)
T KOG0780|consen 214 PDEIIFVMDASIG--QAAEAQARAFKE-TVDVGAVILTKLDGHAKG 256 (483)
T ss_pred CCeEEEEEecccc--HhHHHHHHHHHH-hhccceEEEEecccCCCC
Confidence 4778888775432 122233334443 355678999996655443
No 105
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.77 E-value=4e-08 Score=92.62 Aligned_cols=188 Identities=18% Similarity=0.213 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc-ccCCCCCceeeeccCCceEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
|.|.|++.-.|+|||++++.|+.+|.++|.||..+=-=.++... +.+.... ....... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~----d~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED----DEDAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC----SSHHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC----CchHHHHHHHhCCCc---ccccccccccCccc
Confidence 46889999999999999999999999999999876542222110 0000000 0000000 00000001111000
Q ss_pred CCCcccccCCccHHHHHHHH-HHhcccCCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l-~~~~~~~~yD~VIID~pp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~ 325 (516)
. .............++++ .+.+. ..+|++||+...+... ....++.... ..+++|+....-++..+.-.
T Consensus 74 ~--~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 S--PHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp ---HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred C--HHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0 00000000001113333 24444 7999999999876542 1122222222 24778888888889999999
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHh
Q 010156 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 383 (516)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~ 383 (516)
++.+++.+.++.|+|+|++... +..+.+.+..++++++.||+++.+.
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999998999999999995321 4688899999999999999998764
No 106
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.77 E-value=2e-08 Score=98.85 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=100.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+.||.|+ |-.|+||||+...||+.|.+.|++|++.=+|..+... .++.-.....-|+.+|...
T Consensus 138 ~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA---------------iEQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 138 KPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA---------------IEQLEVWGERLGVPVISGK 201 (340)
T ss_pred CcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH---------------HHHHHHHHHHhCCeEEccC
Confidence 45689998 8899999999999999999999999999999865321 1111111223477777643
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhh-------c-----CCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV-------V-----PLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~-------~-----~~d~viiV~~p~~~s~ 319 (516)
. +. +....+-..++....++||+|||||.+.+..-.-.+..+ - +-+.++++..... -
T Consensus 202 ~-G~--------DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt--G 270 (340)
T COG0552 202 E-GA--------DPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT--G 270 (340)
T ss_pred C-CC--------CcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc--C
Confidence 2 21 122223333333334899999999988653211100000 0 1122455533221 1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.++..-.+.|.+ -+++.|+|+++++....+ +.+-.+..++++|+.+.
T Consensus 271 qnal~QAk~F~e-av~l~GiIlTKlDgtAKG--------G~il~I~~~l~~PI~fi 317 (340)
T COG0552 271 QNALSQAKIFNE-AVGLDGIILTKLDGTAKG--------GIILSIAYELGIPIKFI 317 (340)
T ss_pred hhHHHHHHHHHH-hcCCceEEEEecccCCCc--------ceeeeHHHHhCCCEEEE
Confidence 222233344444 245689999998866655 35567888899887654
No 107
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.74 E-value=2.5e-07 Score=102.86 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=101.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
|+|.|.|++...|+|||++++.|+..|.++|+||..+--..+++.. .. ... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~~---------~~~-------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------MS---------EVE-------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------HH---------HHH-------HHHhcc
Confidence 5678999999999999999999999999999999998744433100 00 000 000000
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHHH---
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDV--- 322 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~~~d~viiV~~p~~~s~~~~--- 322 (516)
. ........++.+ ..+. .+||+||||++.+.+... ..++.. -.+.+++|+.++..++.++
T Consensus 58 ----~----~~~~~~~I~~~~-~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~-L~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ----Q----LDELLEEIVARY-HALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKN-LGAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ----C----ChHHHHHHHHHH-HHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHH-hCCCEEEEECCCCCChHHHHHH
Confidence 0 001112222222 3333 789999999987654321 111111 1356888998887775443
Q ss_pred -HHHHHHHH-cCCCCEEEEEEec--ccccCCCcccccc----C-----CchHHHHHHHhCCCeEEecCCChhHh
Q 010156 323 -AKGVRMFS-KLKVPCIAVVENM--CHFDADGKRYYPF----G-----RGSGSQVVQQFGIPHLFDLPIRPTLS 383 (516)
Q Consensus 323 -~~~~~~l~-~~~~~~~gvV~N~--~~~~~~~~~~~~~----~-----~~~~~~~~~~~g~~~l~~IP~~~~i~ 383 (516)
.-..+.+. ..+.++.|+|+|+ +...........+ . ........+..++++++.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 33344444 4568899999999 4322111000000 0 00011223345888999999998544
No 108
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.71 E-value=3.7e-07 Score=95.76 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE----------EecCCChhHhhccc
Q 010156 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL----------FDLPIRPTLSASGD 387 (516)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l----------~~IP~~~~i~~a~~ 387 (516)
.+.++.+.++.+++++++++ |.+|+...+...+ .+.+++++++.|.+++ +.+|+.+.+.++..
T Consensus 357 Gl~NL~RHIenvr~FGvPvV-VAINKFd~DTe~E------i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRKFGVPVV-VAINKFVTDTDAE------IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHHcCCCEE-EEEeCCCCCCHHH------HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 45677888899999999965 7779965544211 1457888899999999 88999999988888
Q ss_pred CCCc--eEEeCCCCHHHHHHHHHHHHHH
Q 010156 388 SGMP--EVAADPCGEVANTFQDLGVCVV 413 (516)
Q Consensus 388 ~g~p--l~~~~p~s~~~~~~~~La~~i~ 413 (516)
.+.+ -..|..+.+..+.++.+|++|.
T Consensus 430 ~~~s~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 430 EGESNFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred cCCCCCceecCCCCcHHHHHHHHHHHcc
Confidence 6554 1335567889999999999876
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.71 E-value=2.2e-07 Score=98.92 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=101.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC-CCCCCCCCCCCccc---ccc----cCCCCCceeeecc--C--
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV-YGPSLPTMVSPENR---LLE----MNPEKRTIIPTEY--L-- 243 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~-~~~~~~~~l~~~~~---~~~----~~~~~~~i~~~~~--~-- 243 (516)
|.|++...+||||++++.|+..|.++|++|..+-.-. ..++....-+.+.. ... .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 4578889999999999999999999999999775431 11111000011110 000 0000111111110 0
Q ss_pred -CceEEcCCCCCCc--ccccCC---ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEE
Q 010156 244 -GVKLVSFGFSGQG--RAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAV 309 (516)
Q Consensus 244 -~l~vl~~~~~~~~--~~~~~~---~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~vi 309 (516)
...++-.+..... ...... ......+.+.+..+. ..||+||||+++|+.+. ...++....++ ++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap-VI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD-AI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-EE
Confidence 0112211111000 000000 112233344444443 68999999999876431 12222233333 56
Q ss_pred EEeCCCcchH-HHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 310 IVTTPQKLAF-IDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 310 iV~~p~~~s~-~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
+|+.....+. ..+...++.++.. +..+.|+|+|++..+. ...++..+.+.+..|+|+++.+|+.+
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 6666655433 3444555555542 2578999999975421 11124456667777999999999865
No 110
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.66 E-value=1.6e-07 Score=103.16 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=99.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
.++|+|+ |-.|+||||+...||..+. ..| ++|.+|++|.+.......+ .. .....|+.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL------~~---------~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQL------RI---------YGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHH------HH---------HHHhCCCCcccc
Confidence 4689998 8899999999999999885 566 6999999998764321100 00 000112211110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-h----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-T----LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~-~~~~-~----~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
. .. ..+.+.++.+ .+||+|||||++-.. +..+ . +.....-+.+++|+.... ...++..
T Consensus 249 ----------~--~~-~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 ----------K--DA-ADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ----------C--CH-HHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 0 01 1233444433 588999999988432 1111 1 111122356677776653 4556667
Q ss_pred HHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe-----cCCC
Q 010156 325 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-----LPIR 379 (516)
Q Consensus 325 ~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~-----IP~~ 379 (516)
+++.++.. +.++-|+|+++.+..... +.+-.+...++.|+.+. ||.|
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~--------G~iL~i~~~~~lPI~yit~GQ~VPdD 365 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL--------GPALDTVIRHRLPVHYVSTGQKVPEH 365 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc--------cHHHHHHHHHCCCeEEEecCCCChhh
Confidence 77777654 346779999996644322 45667777778877654 6654
No 111
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2.3e-07 Score=90.96 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=97.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
..+|+|. |++|+||||+...||..+..+|++|.++++|.+....... +... ....++.+...
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~q------l~~~---------~~~~~~~~~~~-- 136 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQDY---------VKTIGFEVIAV-- 136 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH------HHHH---------hhhcCceEEec--
Confidence 3588888 7799999999999999999889999999999875221100 0000 00112332221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhh----hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~--~~~~----~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
.....+...++.+.. ..+||+||||||+... ...+ .......-+.+++|+.+.. ...++...+
T Consensus 137 -------~~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~~~ 205 (270)
T PRK06731 137 -------RDEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEII 205 (270)
T ss_pred -------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHHHH
Confidence 011112223333321 1579999999998752 1111 1111223456666766543 334555666
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+.+.. +++-|+|+++.+..... +.+-.+....+.|+.+.
T Consensus 206 ~~f~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 206 TNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 244 (270)
T ss_pred HHhCC--CCCCEEEEEeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 77765 55679999996543322 45667777888887754
No 112
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.64 E-value=6.2e-07 Score=86.94 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=96.8
Q ss_pred ccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC-CCCCCcccccccCCCCCceeeeccCCceE
Q 010156 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKL 247 (516)
Q Consensus 169 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~v 247 (516)
..+.+.+|+|+ |-+|+||||+.-.|...|.++|+||.+|--||..+-+. .++|..-+... ....+|+.+
T Consensus 47 ~tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~---------~~~~~~vFi 116 (323)
T COG1703 47 RTGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQR---------LAVDPGVFI 116 (323)
T ss_pred cCCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHh---------hccCCCeEE
Confidence 34567799999 89999999999999999999999999999999765332 22332211111 112467777
Q ss_pred EcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH
Q 010156 248 VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV 326 (516)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~ 326 (516)
-|++..+.-- .++......+..++...||+|||-|-. .|...... ...+|.+++|+.|..- .+...+..+
T Consensus 117 Rs~~srG~lG------GlS~at~~~i~~ldAaG~DvIIVETVG-vGQsev~I--~~~aDt~~~v~~pg~GD~~Q~iK~Gi 187 (323)
T COG1703 117 RSSPSRGTLG------GLSRATREAIKLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFLVVMIPGAGDDLQGIKAGI 187 (323)
T ss_pred eecCCCccch------hhhHHHHHHHHHHHhcCCCEEEEEecC-CCcchhHH--hhhcceEEEEecCCCCcHHHHHHhhh
Confidence 7755433211 123344444545555799999999965 33322222 3346888999888764 344444333
Q ss_pred HHHHcCCCCEEEEEEeccc
Q 010156 327 RMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~ 345 (516)
-.+.. -+|+|+.+
T Consensus 188 mEiaD------i~vINKaD 200 (323)
T COG1703 188 MEIAD------IIVINKAD 200 (323)
T ss_pred hhhhh------eeeEeccC
Confidence 33322 37889965
No 113
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.63 E-value=6.9e-07 Score=90.15 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=89.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeeeccCCceEEc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (516)
+.+.+|.|+ |-.|+||||++..|+..|...|++|.+|..||+.+.... ++|....... ....++..+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 456688888 779999999999999999999999999999997653221 2221111100 01223434443
Q ss_pred CCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHH
Q 010156 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRM 328 (516)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~-p~~~s~~~~~~~~~~ 328 (516)
.+.... + ......+.+.+..+...+||+|||||++-- ...... ...+|.+++|+. +....+...... .
T Consensus 124 ~~~~~~----l--~~~a~~~~~~~~~~~~~g~d~viieT~Gv~-qs~~~i--~~~aD~vlvv~~p~~gd~iq~~k~g--i 192 (332)
T PRK09435 124 SPSSGT----L--GGVARKTRETMLLCEAAGYDVILVETVGVG-QSETAV--AGMVDFFLLLQLPGAGDELQGIKKG--I 192 (332)
T ss_pred cCCccc----c--cchHHHHHHHHHHHhccCCCEEEEECCCCc-cchhHH--HHhCCEEEEEecCCchHHHHHHHhh--h
Confidence 222110 0 112334444444444478999999998743 322222 335788888876 444444443331 2
Q ss_pred HHcCCCCEEEEEEeccccc
Q 010156 329 FSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~ 347 (516)
++-.. -+|+|+++..
T Consensus 193 ~E~aD----IiVVNKaDl~ 207 (332)
T PRK09435 193 MELAD----LIVINKADGD 207 (332)
T ss_pred hhhhh----eEEeehhccc
Confidence 22222 3888997643
No 114
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.62 E-value=1.2e-06 Score=82.88 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=113.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc-ccCCCCCceeeeccCCceEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
||+.+.|++.--|||||.++..|+.+|..+|++|...-.=..+..-.. -..+.... ....... .....+.+.+..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~-~~~D~~~l~~~~~~~~---~~~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETA-ENSDALVLQRLSGLDL---SYELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCC-CCchHHHHHHhcCCCc---ccccccceecCC
Confidence 578999999999999999999999999999999987543211110000 00000000 0000000 001112222221
Q ss_pred CCCCCcccccCC-ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh---hhhhhh--cCCCeEEEEeCCCcchHHHHHH
Q 010156 251 GFSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQV--VPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~---~~~~~~--~~~d~viiV~~p~~~s~~~~~~ 324 (516)
..+..-.....+ ......+..-+..+. ..||+|||-...|+-... ...... .-..-+|+|+....-++..+.-
T Consensus 77 P~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlL 155 (223)
T COG0132 77 PLSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLL 155 (223)
T ss_pred CCCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHH
Confidence 111100000000 011222333333333 699999999998863110 111111 1124578889998999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhH
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (516)
.++.+++.++++.|+|+|......... ......+.+..+.|+++.+|+-+..
T Consensus 156 t~eal~~~gl~l~G~I~n~~~~~~~~~------~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 156 TVEALRARGLPLAGWVANGINPELDHY------AEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHHCCCCEEEEEEccCCCchhHH------HHHHHHHHHhcCCCccccccCCccc
Confidence 999999999999999999865332111 1122356778899999999986543
No 115
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=7.6e-07 Score=90.98 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=91.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH-CC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G-~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
..+|+|+ |..|+||||++..||..+.. .| ++|.+|.+|.+....... +.. ....-|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~Eq------L~~---------~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQ------LRI---------FGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHH------HHH---------HHHHcCCceEec
Confidence 4578877 89999999999999998864 56 699999999986421110 000 000112222110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhh-hhhhh---cCCCeEEEEeCCCcchHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQV---VPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~--~~~~-~~~~~---~~~d~viiV~~p~~~s~~~~~~ 324 (516)
. ....+...+.++ .++|+|||||++-.. .... ....+ ......++|+.+.. ....+..
T Consensus 201 ~---------~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 K---------DGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred C---------CcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 0 111222233332 678999999987431 1111 11111 12234566666544 3444555
Q ss_pred HHHHHHcCC-------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 325 GVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 325 ~~~~l~~~~-------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.++.+.... .++.|+|+++.+-.... +.+-.+....+.|+.+.
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASNL--------GGVLDTVIRYKLPVHYV 314 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCCc--------cHHHHHHHHHCcCeEEE
Confidence 555555432 23679999996543322 45666777778776653
No 116
>PRK00784 cobyric acid synthase; Provisional
Probab=98.59 E-value=1.9e-06 Score=92.31 Aligned_cols=200 Identities=18% Similarity=0.171 Sum_probs=101.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC---cc---cccc----cCCCCCceeeec
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP---EN---RLLE----MNPEKRTIIPTE 241 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~---~~---~~~~----~~~~~~~i~~~~ 241 (516)
||+.|.|++...|||||++++.|+.+|.++|++|..+-. ++.+.....+. +. .... .......+.|.-
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~ 78 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVL 78 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEE
Confidence 477899999999999999999999999999999987743 22111110000 00 0000 000000111100
Q ss_pred ----cCCce-EEcCCCCC--Ccc-c-ccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC-------h-hhhhhhhhcC
Q 010156 242 ----YLGVK-LVSFGFSG--QGR-A-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-------D-IQLTLCQVVP 304 (516)
Q Consensus 242 ----~~~l~-vl~~~~~~--~~~-~-~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~-------~-~~~~~~~~~~ 304 (516)
.+.+. .+-.|... .+. . ..........+.+.+..+. .+||++||+...|.- + ....++....
T Consensus 79 ~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~ 157 (488)
T PRK00784 79 LKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAAD 157 (488)
T ss_pred ecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHcC
Confidence 00000 00000000 000 0 0001112233333333333 689999999773322 1 0112222222
Q ss_pred CCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChh
Q 010156 305 LTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (516)
Q Consensus 305 ~d~viiV~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (516)
.-+++|+..... ++..+...++.+.. .+.++.|+|+|++..+. ..-++..+.+.+..|+|+++.||+++.
T Consensus 158 -~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~iP~~~~ 229 (488)
T PRK00784 158 -APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVLPYLDD 229 (488)
T ss_pred -CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEcCCCcC
Confidence 235566665443 35555545566653 35689999999976321 011234455667789999999999764
No 117
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.52 E-value=2e-06 Score=91.13 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=104.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (516)
|.|++...|+||||+++.|+.+|+++|++|..+-.- +. . .+..+... +......+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d---~--~D~~~~~~------~~g~~~~~ld~-------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PD---Y--IDPMFHTQ------ATGRPSRNLDS-------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CC---C--CCHHHHHH------HhCCchhhCCc--------
Confidence 678889999999999999999999999999998752 11 0 01000000 00000011110
Q ss_pred cccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH-
Q 010156 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG- 325 (516)
Q Consensus 256 ~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~- 325 (516)
... -...+.+.+..+. ..+|++||....|+-+ ....++.... .-+++|+.... ....+..+
T Consensus 60 --~~~----~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~-~~~t~~al~ 130 (449)
T TIGR00379 60 --FFM----SEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQR-LSRSAAAIV 130 (449)
T ss_pred --ccC----CHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCch-HHHHHHHHH
Confidence 000 1233444444443 6899999998754421 1122222221 23455555442 11222222
Q ss_pred --HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhh-cccC-CCceEEeCCCCHH
Q 010156 326 --VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA-SGDS-GMPEVAADPCGEV 401 (516)
Q Consensus 326 --~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~-a~~~-g~pl~~~~p~s~~ 401 (516)
...+ ..++++.|+|+|++.... ++ ....+.+.+..++|+++.||+++.+.- .... ..|..+ ....
T Consensus 131 ~~~~~~-~~~i~i~GvIlN~v~~~~----~~---~~~~~~i~~~~gipvLG~IP~~~~l~~p~rhLgLv~~~e---~~~~ 199 (449)
T TIGR00379 131 LGYRSF-DPGVKLKGVILNRVGSER----HL---EKLKIAVEPLRGIPILGVIPRQQDLKVPDRHLGLVPAGE---REII 199 (449)
T ss_pred HHHHhh-CCCCCEEEEEEECCCCHH----HH---HHHHHHHHHhCCCCEEEEecCccccCCCCcccCCCChhh---hhhH
Confidence 2222 347889999999975321 10 122344555579999999999986542 1111 223333 2344
Q ss_pred HHHHHHHHHHHHH
Q 010156 402 ANTFQDLGVCVVQ 414 (516)
Q Consensus 402 ~~~~~~La~~i~~ 414 (516)
.+.+..+++.+.+
T Consensus 200 ~~~~~~~~~~~~~ 212 (449)
T TIGR00379 200 QQIFDWLAEVVEK 212 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 5555666665544
No 118
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=1.1e-06 Score=92.51 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
+++|+|+ |-.|+||||++..||..+. +.| ++|.+|++|.+..... +.+... ....|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~------EQLr~~---------AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH------EQLRIY---------GKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH------HHHHHH---------HHHhCCCeecc
Confidence 4689998 8899999999999999886 456 5999999998753210 000000 00011111100
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-h-hhhhhhc-C---CCeEEEEeCCCcchHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-Q-LTLCQVV-P---LTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~-~-~~~~~~~-~---~d~viiV~~p~~~s~~~~~~ 324 (516)
. .. ......+. .+ .++|+++|||++..... . ....... . -...++|+... .....+.+
T Consensus 320 ---~------~~---~Dl~~aL~-~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt-~~~~~l~~ 383 (484)
T PRK06995 320 ---K------DA---ADLRLALS-EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT-SHGDTLNE 383 (484)
T ss_pred ---C------Cc---hhHHHHHH-hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC-CcHHHHHH
Confidence 0 00 11122222 22 67899999996532111 0 0111111 1 12245555443 33455666
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.++.+...+ +.|+|+|+.+..... +.+-.+...+++|+.+.
T Consensus 384 i~~~f~~~~--~~g~IlTKlDet~~~--------G~~l~i~~~~~lPI~yv 424 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDEAASL--------GGALDVVIRYKLPLHYV 424 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCCcccc--------hHHHHHHHHHCCCeEEE
Confidence 677776644 568999996644322 45667777788876653
No 119
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.50 E-value=1.3e-07 Score=94.10 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=37.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-C-CcEEEEEcCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 215 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~rVllID~D~~~~ 215 (516)
.++|+|+ |.+|+||||++++||..++.+ | ++|.+|++|++..
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4688888 679999999999999999976 5 9999999999874
No 120
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.48 E-value=2.9e-06 Score=86.37 Aligned_cols=168 Identities=22% Similarity=0.256 Sum_probs=98.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC--CCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY--GPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~--~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.|.+.+...|+||||+|..|..+|.++|.+|--+-.-|. .|+.+.. +.-....|||..-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~----------------atG~~srNLD~~m--- 62 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTA----------------ATGRPSRNLDSWM--- 62 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhH----------------hhCCccCCCchhh---
Confidence 467888999999999999999999999988855444221 1111111 0001112333221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcchHH--H
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLAFI--D 321 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~---------~~~~~~~~~~d~viiV~~p~~~s~~--~ 321 (516)
+....+++++.... ++.|+.||-.--|+-|- +..++.+.. .-+|+|++....+.. .
T Consensus 63 -----------m~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AA 129 (451)
T COG1797 63 -----------MGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAA 129 (451)
T ss_pred -----------cCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHH
Confidence 11244555555443 67888887554433221 111111111 236778777666543 3
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHH-hCCCeEEecCCChhHh
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTLS 383 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~IP~~~~i~ 383 (516)
+.+..+.+.. ++++.|||+|++.... ++ +.+.+..+. .|+++++.||.++.+.
T Consensus 130 iv~G~~~fdp-~v~iaGVIlNrVgser----H~----~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 130 IVKGFKHFDP-DVNIAGVILNRVGSER----HY----ELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHHhcCC-CCceEEEEEecCCCHH----HH----HHHHHHhhhcCCCcEEEEecCCcccC
Confidence 4444444443 5778999999976432 11 345555555 7899999999998643
No 121
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.36 E-value=1.9e-06 Score=82.63 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=84.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC-CCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
...+|+|+ |-+|+||||+.-.|+..|.+.|+||.++-.||..+-+. .+||..-+... ....+|+++-|+
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~---------~~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQE---------LSRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHH---------HHTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcC---------cCCCCCEEEeec
Confidence 45799998 88999999999999999999999999999999765432 23442222111 123467777775
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF 329 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l 329 (516)
...+.- ..+.......+..++.-.||+|||-|-. .|.....+ ...+|.+++|..|..- .+...+..+-.+
T Consensus 98 atRG~l------GGls~~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I--~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi 168 (266)
T PF03308_consen 98 ATRGSL------GGLSRATRDAVRLLDAAGFDVIIIETVG-VGQSEVDI--ADMADTVVLVLVPGLGDEIQAIKAGIMEI 168 (266)
T ss_dssp ---SSH------HHHHHHHHHHHHHHHHTT-SEEEEEEES-SSTHHHHH--HTTSSEEEEEEESSTCCCCCTB-TTHHHH
T ss_pred CcCCCC------CCccHhHHHHHHHHHHcCCCEEEEeCCC-CCccHHHH--HHhcCeEEEEecCCCccHHHHHhhhhhhh
Confidence 543321 1123334444444444789999999965 44433444 3356999999888664 233333222222
Q ss_pred HcCCCCEEEEEEeccc
Q 010156 330 SKLKVPCIAVVENMCH 345 (516)
Q Consensus 330 ~~~~~~~~gvV~N~~~ 345 (516)
.+ -+|+|+.+
T Consensus 169 aD------i~vVNKaD 178 (266)
T PF03308_consen 169 AD------IFVVNKAD 178 (266)
T ss_dssp -S------EEEEE--S
T ss_pred cc------EEEEeCCC
Confidence 22 37889965
No 122
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.19 E-value=1.7e-05 Score=80.81 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=90.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
.++|+++ |--||||||+-+.||+.+. ...+||.+|-+|.+.-.... .+.... ..-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E------QLk~Ya---------~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE------QLKTYA---------DIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH------HHHHHH---------HHhCCceEE-
Confidence 7899998 7789999999999999999 34689999999998732111 000000 000111110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~------~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
......+...+..+ .+||+|+|||.+.-...... .........+.+|... .....++..
T Consensus 266 --------v~~~~el~~ai~~l------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa-t~K~~dlke 330 (407)
T COG1419 266 --------VYSPKELAEAIEAL------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA-TTKYEDLKE 330 (407)
T ss_pred --------ecCHHHHHHHHHHh------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec-CcchHHHHH
Confidence 11122233333333 68899999997632111111 1111112233344333 345567788
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.++.+..++ +-|+|+++.+-... -+.+=.+..+.+.|+.+.
T Consensus 331 i~~~f~~~~--i~~~I~TKlDET~s--------~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 331 IIKQFSLFP--IDGLIFTKLDETTS--------LGNLFSLMYETRLPVSYV 371 (407)
T ss_pred HHHHhccCC--cceeEEEcccccCc--------hhHHHHHHHHhCCCeEEE
Confidence 888887754 56999998542221 134445555566666543
No 123
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=1e-05 Score=82.61 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=96.8
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc-ccccccCCCCCceeeeccCCceEE
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLV 248 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~-~~~~~~~~~~~~i~~~~~~~l~vl 248 (516)
++.+-+|+|+ |-.||||||--+.+|++|-+.++||++.-||+.++..-.-|+.. .++.. ....-+.+.
T Consensus 375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~----------l~~~~v~lf 443 (587)
T KOG0781|consen 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA----------LHGTMVELF 443 (587)
T ss_pred cCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH----------hccchhHHH
Confidence 3456799998 88999999999999999999999999999999764321111000 00000 000111122
Q ss_pred cCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---h---hhhhcCCCeEEEEeCC--CcchHH
Q 010156 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---T---LCQVVPLTAAVIVTTP--QKLAFI 320 (516)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~---~---~~~~~~~d~viiV~~p--~~~s~~ 320 (516)
..|+. .+.....++.++......||+|+|||.+.+-+... . +.....-|.++.|-+. ...++.
T Consensus 444 ekGYg---------kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~ 514 (587)
T KOG0781|consen 444 EKGYG---------KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVD 514 (587)
T ss_pred hhhcC---------CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHH
Confidence 22222 22344556666666668999999999886643211 1 1122345777777553 445667
Q ss_pred HHHHHHHHHHcCCC--CEEEEEEeccc
Q 010156 321 DVAKGVRMFSKLKV--PCIAVVENMCH 345 (516)
Q Consensus 321 ~~~~~~~~l~~~~~--~~~gvV~N~~~ 345 (516)
.+.++-+.+..... .+-|+|+++++
T Consensus 515 q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 515 QLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHHhcCCCccccceEEEEecc
Confidence 77777777766543 26799999865
No 124
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.01 E-value=0.00017 Score=76.42 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=96.4
Q ss_pred ccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEE
Q 010156 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (516)
Q Consensus 169 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (516)
.++.|+.|.|++...|+||||+|+.|+.+|.++ |..+-..| ... + +. +.++.+
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D~i----------d-------~~----p~~~~~ 286 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---DVR----------D-------IV----PSLYLL 286 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---Chh----------h-------cC----Ccceec
Confidence 344577899999999999999999999999975 55554321 100 0 00 011111
Q ss_pred c---CCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCc
Q 010156 249 S---FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 249 ~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~---------~~~~~~~~~d~viiV~~p~~ 316 (516)
+ ++............+....++.+. ...+|++||....|+-+.. ..++.... .-+++|+....
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~----~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~ 361 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVK----NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSK 361 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHH----hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCC
Confidence 0 000000000000012223344421 1468999999987764431 11222221 34678888877
Q ss_pred chHHHHHH----HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecC
Q 010156 317 LAFIDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (516)
Q Consensus 317 ~s~~~~~~----~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (516)
.++..+.. ..+++++.++++.|+|+|++.... + .+.+.++.+..|+|+++.++
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~----~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----I----FEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----H----HHHHHHHHHhcCCCEEEecc
Confidence 77444433 345666668899999999976311 1 13456777778999999944
No 125
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.96 E-value=6.4e-05 Score=78.67 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=94.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
|+.|.|++...|+||||+++.|+.+|.++|.+|-.+-..+..- +...... +......+++-.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--------D~~~~~~------~~g~~~~nld~~---- 62 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--------DPSHHEA------VAGRPSRTLDPW---- 62 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--------CHHHHHH------HhCCCcccCChh----
Confidence 3468889999999999999999999999999997776533210 0000000 000000122100
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcch--HHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLA--FIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~----~~~~~~~~~d~viiV~~p~~~s--~~~~~~~~ 326 (516)
+ .+ ...+.+... +..+|++||....|+-+.. ..++.... --+++|+.+...+ +..+...+
T Consensus 63 ------~-~~---~~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 63 ------L-SG---EDGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred ------h-CC---HHHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHH
Confidence 0 01 122333332 1459999999988763321 11111111 2467777766664 33334443
Q ss_pred HHHHc---CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhH
Q 010156 327 RMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (516)
Q Consensus 327 ~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (516)
..+.. .++++.|||+|++.... + ...+.+..++ ++++++.||..+.+
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~~~----h----~~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHGGR----H----ADGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCcHH----H----HHHHHHhhhh-cCceeEecccCCCC
Confidence 33333 37889999999965311 0 0122333333 68999999998754
No 126
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00052 Score=71.47 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=89.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH-HC-CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~-G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
..+|+++ |..|+||||+...||..+. .. +.+|.++-+|.+.-..... +.. ....-|+.+...
T Consensus 191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQ------L~~---------~a~ilGvp~~~v 254 (420)
T PRK14721 191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQ------LRI---------YGKLLGVSVRSI 254 (420)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHH------HHH---------HHHHcCCceecC
Confidence 4689988 9999999999999998654 33 4788999888765321100 000 000012222110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh----hhhhhh---cCCCeEEEEeCCCcchHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQV---VPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~----~~~~~~---~~~d~viiV~~p~~~s~~~~~ 323 (516)
. .. .. +...+..+ .++|+|+|||+ |..... ..+..+ ......++|+..+ ....++.
T Consensus 255 ~---------~~---~d-l~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~~~ 317 (420)
T PRK14721 255 K---------DI---AD-LQLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDTLD 317 (420)
T ss_pred C---------CH---HH-HHHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHHHH
Confidence 0 01 11 11222222 68999999996 443211 111111 1123455666554 3455667
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..+..+... ++-|+|+++.+-.... +.+-.+....+.|+.+.
T Consensus 318 ~~~~~f~~~--~~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~yv 359 (420)
T PRK14721 318 EVISAYQGH--GIHGCIITKVDEAASL--------GIALDAVIRRKLVLHYV 359 (420)
T ss_pred HHHHHhcCC--CCCEEEEEeeeCCCCc--------cHHHHHHHHhCCCEEEE
Confidence 777777654 4579999996643322 45667777778776653
No 127
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.66 E-value=0.00037 Score=68.89 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=66.3
Q ss_pred ccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 010156 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 277 ~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.|+.+++.|||||+...........+..+|.+++|+.++..........++.+...+.+.+ +++|+++.....
T Consensus 60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~------ 132 (268)
T cd04170 60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERAD------ 132 (268)
T ss_pred EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCC------
Confidence 3477899999999854322223334557899999999887666666777888888888765 688997643221
Q ss_pred CCchHHHHHHHhCCCeE-EecCCCh
Q 010156 357 GRGSGSQVVQQFGIPHL-FDLPIRP 380 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~~l-~~IP~~~ 380 (516)
.....+++.+.++.+++ ..+|...
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccC
Confidence 12456788888887655 4577654
No 128
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.66 E-value=0.0014 Score=62.95 Aligned_cols=159 Identities=23% Similarity=0.258 Sum_probs=83.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeec-cCCceEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFG 251 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~vl~~~ 251 (516)
+.+|.|. |-.|+||||....|-.+|...+.+--+|.+||.-..++.-.+.+-+ +.+.-.+ .....+=|-|
T Consensus 19 p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--------DtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 19 PVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--------DTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--------hhhhHHHHHHHhCCCCCc
Confidence 4466666 8899999999999999999988889999999976555443332211 1110000 0000000101
Q ss_pred CCCCcccccCCccHHHHHHH---HHHhcccCCCCEEEEcCCCCCChhhh---------hhhhhcCCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQ---LLTTTEWGELDYLVIDMPPGTGDIQL---------TLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~---l~~~~~~~~yD~VIID~pp~~~~~~~---------~~~~~~~~d~viiV~~p~~~s~ 319 (516)
. ..-.-..+...+.+ +++... +.+||||||||+-+....+ +++...+.-.+.+|=+|...+.
T Consensus 90 g-----I~TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p 163 (366)
T KOG1532|consen 90 G-----IVTSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSP 163 (366)
T ss_pred c-----hhhhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCc
Confidence 0 00000112223343 333322 6799999999985432222 1222222222233333433332
Q ss_pred ----HHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 320 ----IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 320 ----~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
....-+...+-+.+++.+ +++|+++..
T Consensus 164 ~tFMSNMlYAcSilyktklp~i-vvfNK~Dv~ 194 (366)
T KOG1532|consen 164 TTFMSNMLYACSILYKTKLPFI-VVFNKTDVS 194 (366)
T ss_pred hhHHHHHHHHHHHHHhccCCeE-EEEeccccc
Confidence 234445566677788855 778997643
No 129
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.60 E-value=0.0012 Score=64.07 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=62.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|+++.+.++|||+...........+..+|.+++|+.....-.......++.+++.+.+++ +++|+.+..... .
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~------~ 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD------L 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC------H
Confidence 467889999998653322222333556799999988766544556677788888888876 788997643211 1
Q ss_pred CchHHHHHHHhCCCeE-EecC
Q 010156 358 RGSGSQVVQQFGIPHL-FDLP 377 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP 377 (516)
...++++.+.++...+ ..+|
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 3578889999986544 3466
No 130
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.50 E-value=0.0061 Score=60.21 Aligned_cols=96 Identities=19% Similarity=0.110 Sum_probs=64.0
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|+++.+.+||||+...........+..+|.+++|+.....-.....+.++.+.+.+.+++ +++|+.+..... .
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~------~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD------F 133 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998754322223334556799999988766544556778888888888876 688997643211 1
Q ss_pred CchHHHHHHHhCCC-eEEecCCCh
Q 010156 358 RGSGSQVVQQFGIP-HLFDLPIRP 380 (516)
Q Consensus 358 ~~~~~~~~~~~g~~-~l~~IP~~~ 380 (516)
....+++.+.++.. +...+|...
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHhCCCceEEEecccc
Confidence 13567888888754 445577654
No 131
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.50 E-value=0.00019 Score=74.92 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=45.3
Q ss_pred cceEEEEEeCCC---CChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc
Q 010156 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (516)
Q Consensus 172 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~ 225 (516)
..|+|.|+|.-. |.||||+++|||..|++.|+||+++ .+.|++...|+...
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kg 90 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKG 90 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCC
Confidence 468999999999 9999999999999999999999988 77888888776543
No 132
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.44 E-value=5e-05 Score=73.48 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC
Q 010156 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (516)
Q Consensus 181 ~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~ 219 (516)
|-.|+||||.+.++..++...|++|.+|-+||....++.
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y 41 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPY 41 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccccc
Confidence 567999999999999999999999999999997765443
No 133
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.43 E-value=0.0012 Score=59.50 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=37.4
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
||++++|+ |.-|+||||+.-.|...|.++|+||.+|--...+
T Consensus 1 m~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 67899999 6667899999999999999999999999877655
No 134
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.41 E-value=0.0021 Score=63.44 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=60.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|+++.+.|+|||+...........+..+|.+++|+.....-.....+.++.+...+.+++ +++|+++..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a~------~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGRD------P 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCCC------H
Confidence 478899999998743222222333456899999988765433445566777777788855 677997643211 1
Q ss_pred CchHHHHHHHhCCCeE-EecCCC
Q 010156 358 RGSGSQVVQQFGIPHL-FDLPIR 379 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~~ 379 (516)
...++++.+.+|.+.+ ..+|..
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi~ 163 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPIG 163 (267)
T ss_pred HHHHHHHHHHHCCCceeEEeccc
Confidence 1347788888887654 346653
No 135
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.40 E-value=0.00058 Score=69.46 Aligned_cols=42 Identities=38% Similarity=0.435 Sum_probs=36.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
++++.++ -++||||+|.-||-.+-.+|+||.+||+|+..+.+
T Consensus 75 ~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 75 VVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred EEEEECC-cCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 6777744 46899999999999999999999999999977653
No 136
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.38 E-value=0.0003 Score=74.05 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=45.3
Q ss_pred cceEEEEEeCCC---CChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc
Q 010156 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (516)
Q Consensus 172 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~ 224 (516)
..|+|.|+|.-. |.||||+++|||..|++.|+|| ||+ .+.|++...|+..
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~k 105 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVK 105 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCC
Confidence 468999999999 9999999999999999999999 888 9999988877654
No 137
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.34 E-value=0.00068 Score=61.11 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
||+|+ |.-|+||||++..|+..|..+|+||.+|..|..+
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 46677 6669999999999999999999999999988543
No 138
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00022 Score=64.19 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=43.4
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 223 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~ 223 (516)
..+.+|-|+ |-.|+||||+|..|+..|..+|++|-++|.|--...+..-+|.
T Consensus 21 ~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 21 QKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 345678887 8899999999999999999999999999999876666554444
No 139
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.29 E-value=0.00087 Score=64.16 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
|++|.|++. .|+||||++.+|+..|.++|+||.+|..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 578999966 59999999999999999999999999754
No 140
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.21 E-value=0.00058 Score=64.12 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCC
Q 010156 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV 221 (516)
Q Consensus 181 ~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l 221 (516)
|-+|+||||-+..+...|+..|.+|.+|.+||.+-.++.-.
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~ 49 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYEC 49 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCC
Confidence 78999999999999999999999999999999876665443
No 141
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.20 E-value=0.0024 Score=60.76 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+..............+|.+++|+...........+.++.+...+.+++ +|+|+++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 45779999999854332333333557799999988754433334455555555566644 78899763
No 142
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.11 E-value=0.0016 Score=67.90 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=106.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc------c--------cCCCCCce-ee
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL------E--------MNPEKRTI-IP 239 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~------~--------~~~~~~~i-~~ 239 (516)
.|.|.+.-..+|||++++.|...|+++|++|.=+- .|+-++..+.-.+.... + .......+ -|
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK--~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP 80 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFK--SQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKP 80 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCc--hhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEee
Confidence 46667777788899999999999999999987432 23333333322211100 0 00011111 12
Q ss_pred eccCCceEEcCCCCCCcccc---c--CCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh--------hhhhcCCC
Q 010156 240 TEYLGVKLVSFGFSGQGRAI---M--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT--------LCQVVPLT 306 (516)
Q Consensus 240 ~~~~~l~vl~~~~~~~~~~~---~--~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~--------~~~~~~~d 306 (516)
....+..+|-.|........ + ..+.....+.+.++.+. +.||+|++-...+.....+. ++.. +-.
T Consensus 81 ~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~-~da 158 (486)
T COG1492 81 CSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEI-ADA 158 (486)
T ss_pred cCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehh-cCC
Confidence 22235666655533221111 1 01122334455555454 89999999987754332221 1111 112
Q ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhH
Q 010156 307 AAVIVTTPQKL-AFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (516)
Q Consensus 307 ~viiV~~p~~~-s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (516)
-+|+|..=+.- .+..+.-.+..+... +..+.|+|+|+.+.+. .+-...++.+.+..|.|+++.+|+....
T Consensus 159 pvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~------~ll~~gik~Le~~tg~~vlGv~P~~~~~ 230 (486)
T COG1492 159 PVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDE------SLLDPGLKWLEELTGVPVLGVLPYLKDA 230 (486)
T ss_pred CEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCH------HHHhhHHHHHHHhhCCeeEeeccccccc
Confidence 34556554442 122223333334322 3457899999854433 1223578899999999999999987643
No 143
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.11 E-value=0.0026 Score=65.90 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|+|++.| |+||||+..+|...|..+|+||.+|--+.
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 5799999655 99999999999999999999999977654
No 144
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.10 E-value=0.0039 Score=58.50 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+++||||+...........+..+|.+++|+.....-.......+..+.+.+.+.+-+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 56678999998743222223334556899999998876444556677888888888766678899764
No 145
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.05 E-value=0.0015 Score=57.74 Aligned_cols=42 Identities=31% Similarity=0.261 Sum_probs=32.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEE-EEEcCCCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGPS 216 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl-lID~D~~~~~ 216 (516)
++|+|++.| |+||||++..|...|.++|++|. +.|.|...+.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 378898665 89999999999999999999999 8899984433
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.93 E-value=0.0063 Score=55.91 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..++++|+|||+...........+..+|.+++|+.............+..+...+.+ +-+|+|+++.
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~ 126 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR 126 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence 357899999986432222222234467899999887665444455566666665666 4577899764
No 147
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.93 E-value=0.0021 Score=57.55 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.6
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
+..|+.|+||||++..++..++..|.+|++++.+....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 34589999999999999999999999999999986543
No 148
>PRK04296 thymidine kinase; Provisional
Probab=96.85 E-value=0.01 Score=55.44 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=29.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
|.+..|--|+||||.+..++..++..|++|+++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 444558889999999999999999999999999
No 149
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.002 Score=59.14 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+++|.|+ |-.|+||||++..||..|...|.+|.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4577777 8899999999999999999889999999999643
No 150
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.82 E-value=0.0079 Score=55.05 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=35.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
++++|+|+ |..|+||||+...|...|..+|+||..|-.+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45577777 7899999999999999999999999999876543
No 151
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.011 Score=52.81 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=33.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+++..|.|+ |..||||||++..+|-.|...|++|.-+=+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 345678877 999999999999999999999999976544
No 152
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.78 E-value=0.0094 Score=60.72 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=35.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
||+++.+++.-.|+|||+++.+|++.|.++|.+|.++-
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 68899999999999999999999999999999999874
No 153
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.75 E-value=0.011 Score=55.85 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
++..+.|+|||+...........+..+|.+++|+.....-.....+....+...+.+.+-+|+|+.+..
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 567789999986322111122234567999999887654444444555566666665555788997753
No 154
>PRK08233 hypothetical protein; Provisional
Probab=96.74 E-value=0.0042 Score=57.13 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=28.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
++|+|.+ -.|+||||+|..||..|. +..++..|.+..
T Consensus 4 ~iI~I~G-~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIAA-VSGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred eEEEEEC-CCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 5777775 459999999999999874 347888887754
No 155
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.74 E-value=0.0025 Score=57.15 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
.+|-++ |..|+||||+|..|...|...|.+|.++|.|.-...
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 466666 999999999999999999999999999999976644
No 156
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.73 E-value=0.019 Score=51.04 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..++++++|||+-..... ........+|.+++++..............+.+...+.++ .+|+|+++.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhc
Confidence 357899999876322110 1111244568888888776653333445556666656664 588899654
No 157
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.72 E-value=0.013 Score=54.53 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+.+.+||||+...........+..+|.+++|+.+..--.......++.+...+++ +-+++|+++.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 678899999987433222233345678999999998876667788889999999999 6688899764
No 158
>PRK07667 uridine kinase; Provisional
Probab=96.70 E-value=0.0033 Score=58.89 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+|++. |-.|+||||+|..|+..|...|.+|.++++|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 467776 999999999999999999999999999999964
No 159
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.0072 Score=54.46 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=29.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.|-|+.+. |.||||.|..+|...+.+|+||+++=.
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45555454 999999999999999999999999543
No 160
>PRK12740 elongation factor G; Reviewed
Probab=96.64 E-value=0.012 Score=66.04 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=62.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|++|++.+||||+...........+..+|.+++|+.+...........++.+...+.+.+ +|+|+++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 478999999998754322222333557899999999877655556667777777788765 588997643211 1
Q ss_pred CchHHHHHHHhCCCeE-EecCC
Q 010156 358 RGSGSQVVQQFGIPHL-FDLPI 378 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~ 378 (516)
....+++.+.++.+.+ ..+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 2456778888886543 45665
No 161
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.64 E-value=0.0037 Score=62.95 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++.|+ +..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 455565 78999999999999999999999999999874
No 162
>PRK00089 era GTPase Era; Reviewed
Probab=96.62 E-value=0.024 Score=56.64 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=41.4
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
++++++++|||+-.... ......+..+|.+++|+.....-.......++.+...+.+++ +|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCC
Confidence 44789999998743211 111122446788888888766322344555666666566655 778997643
No 163
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.62 E-value=0.006 Score=68.74 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=46.9
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
|.+|++.|+|||+...........+..+|.+++|+....--.......++.+.+.+.+.+ +++|+++.
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 478999999999754322233344567899999987755333445566666666777876 89999764
No 164
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.62 E-value=0.0031 Score=60.13 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+....+.+|+||||++.++|..++..|.+|+.+|++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 344445899999999999999999999999999998754
No 165
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.62 E-value=0.031 Score=60.54 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=61.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
++.+.+.|+|||+...........+..+|.+++|+.....-.....+.++..+..+++++ +++|+.+..... .
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~~a~------~ 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRDGRE------P 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCcccccC------H
Confidence 467889999998753322222333557899999988765444456677777777888865 677997533211 1
Q ss_pred CchHHHHHHHhCCCeE-EecCC
Q 010156 358 RGSGSQVVQQFGIPHL-FDLPI 378 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~ 378 (516)
.+.++++.+.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 1356788888887644 34565
No 166
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.54 E-value=0.0075 Score=57.45 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+..++.+.|+ |+.|+||||+|.+|+ .++++++.|-.
T Consensus 9 ~~~~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 3334567777 999999999988773 47899999963
No 167
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.52 E-value=0.0055 Score=55.43 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
|++|+|++. .|+||||++..|+..|...|++|..|..|..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 578899844 69999999999999999999999999887654
No 168
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.50 E-value=0.0033 Score=60.96 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=32.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH------------CCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~------------~G~rVllID~D~~~ 214 (516)
.+++..+-||+||||++.++|.++|. .+.+|++++++-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 35677799999999999999999873 35689999987543
No 169
>PRK00007 elongation factor G; Reviewed
Probab=96.45 E-value=0.034 Score=62.46 Aligned_cols=95 Identities=21% Similarity=0.120 Sum_probs=63.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|.++.+.+||||+...........+..+|.+++|+....--.......+..+.+.+.+.+ +++|+.+..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~------~ 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD------F 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998743222222333556799999988765545556778888888899987 888997644311 1
Q ss_pred CchHHHHHHHhCCCe-EEecCCC
Q 010156 358 RGSGSQVVQQFGIPH-LFDLPIR 379 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~~ 379 (516)
....+++.+.++... ...+|..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPIG 167 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecCc
Confidence 135678888887543 3446653
No 170
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0052 Score=57.77 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..+.+|.++ |..|+||||++..|+..|...|..++++|.|...
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345677777 8889999999999999999889999999998754
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.44 E-value=0.035 Score=58.80 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=40.5
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.++++.|+|||+..... ......+..+|.+++|+.....-...-..+.+++++.+.+++ +|+|+++.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 45678999997643200 011122446788999888765322222345666777777755 77899763
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.41 E-value=0.035 Score=49.07 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+++.|+|||+...... ........+|.+++|+.+..........+.+++++.+.++ -+|+|+++.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECccc
Confidence 457899999997543211 1111234578888888775432222334566676667664 467799654
No 173
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.40 E-value=0.031 Score=60.46 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=58.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
++++.+.|+|||+...........+..+|.+++|+.....-.......++.++..+.++ -+++|+++..... .
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi-ivviNKiD~~~~~------~ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPI-FTFMNKLDRDIRD------P 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccccCCC------H
Confidence 36788999999875322222223355789999998877643445567777777777774 4677997643211 1
Q ss_pred CchHHHHHHHhCCCe-EEecCC
Q 010156 358 RGSGSQVVQQFGIPH-LFDLPI 378 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~ 378 (516)
.+..+++.+.++... ...+|.
T Consensus 150 ~~ll~~i~~~l~~~~~~~~~PI 171 (527)
T TIGR00503 150 LELLDEVENELKINCAPITWPI 171 (527)
T ss_pred HHHHHHHHHHhCCCCccEEEEe
Confidence 135677778877543 233453
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.39 E-value=0.0064 Score=58.29 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.++.| .|.+|+|||+++.++|...++.|.+|+.||++
T Consensus 24 ~i~~i-~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQI-YGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35555 59999999999999999999999999999999
No 175
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.39 E-value=0.058 Score=48.71 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.+|--|+||||+...+.... .|.++.++-.|..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G 37 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFG 37 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCC
Confidence 3445889999999999887653 4889988877753
No 176
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.37 E-value=0.18 Score=57.38 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 010156 279 GELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (516)
..+|++||.+..|+-. ....+..... --+|+|+....-++..+.-.++.++..|+++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 3689999999987621 1111111111 24788888888899999999999999999999999996
No 177
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.37 E-value=0.042 Score=49.38 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=42.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+++.|+|||+..............+|.+++|+.++..........+..+...+.++ -+|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPF-IVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEEceec
Confidence 4688999999864222222222234678899998887643444445556666677774 577799764
No 178
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.36 E-value=0.017 Score=58.40 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=35.6
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.||+|-|- .||+|||+++..||..|.++|++|.+|-=.-.+
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 48999666 699999999999999999999999999766543
No 179
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.34 E-value=0.16 Score=47.27 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=42.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||+..............+|.+++|+.............+..+...+.++ -+|+|+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5677899999864322222222245678999998876644344445555555567775 577899775
No 180
>PRK00049 elongation factor Tu; Reviewed
Probab=96.33 E-value=0.03 Score=58.61 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=47.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+++||||............+..+|.+++|+....--.......+.++...+.+.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45678999998742222222233456899999998876544566777888888888877678899764
No 181
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.30 E-value=0.0078 Score=60.68 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++-|+ |..|+||||++.+++...++.|.+|+.||+.-
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 455555 78999999999999999999999999999864
No 182
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.28 E-value=0.016 Score=52.96 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=29.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|-++.+ .|.||||.|..+|...+.+|+||+++=.-
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFl 42 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFI 42 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3444434 89999999999999999999999998553
No 183
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.28 E-value=0.059 Score=51.70 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~--~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+-+.+||||+...........+ ..+|.+++|+..+..-.......++.+...++++ -+|+|+++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 577899999987432222222222 2468889988876655566678888888889985 578899764
No 184
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.0057 Score=59.36 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.+..|++|+|||+++.++|..|.+.|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4556999999999999999999999999999965
No 185
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0075 Score=57.81 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+|+|. |.+|+||||+|..||..|...|.+|+.+-+|-..
T Consensus 23 ~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 466765 8999999999999999999889999998877554
No 186
>PRK05973 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.0064 Score=58.57 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.+.++.+|+|||+++.++|...++.|++|+++.++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 355556999999999999999999999999999999864
No 187
>PF13479 AAA_24: AAA domain
Probab=96.24 E-value=0.016 Score=55.17 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++|+ |..|+||||++..+ -++++||+|..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 46666 99999999998877 68999999974
No 188
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.018 Score=56.05 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
..-.|--+|||.......-.+.....+|++|+|+....-..-..+.-+=+.++.|++.+-+++|+++.-.
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 4456889999886543332333345679999999887777777777777788899999999999987543
No 189
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0058 Score=62.31 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=31.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+...++-.|+||||+-.++|..||+++ |||.|....
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 444569999999999999999999998 999998765
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.19 E-value=0.0095 Score=51.20 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..+.+. |..|+||||++..+|..+...++.++.++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 356666 7799999999999999998887789999888654
No 191
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.18 E-value=0.007 Score=55.91 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=33.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+..|.+|+|||+++.+++...++.|.+|+++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 34569999999999999999999999999999998643
No 192
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.18 E-value=0.0099 Score=56.19 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=34.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.|+ |.+|+|||+++.++|...++.|.+|+.||++-
T Consensus 13 ~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456665 89999999999999999999999999999984
No 193
>PRK12739 elongation factor G; Reviewed
Probab=96.17 E-value=0.055 Score=60.84 Aligned_cols=95 Identities=22% Similarity=0.103 Sum_probs=61.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|+++.+++||||+...........+..+|.+++|+....---......+..+.+.+.+.+ +++|+.+..... -
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~------~ 142 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD------F 142 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 477889999998743222222333556799999998765444455677888888888886 888997654221 1
Q ss_pred CchHHHHHHHhCCCe-EEecCCC
Q 010156 358 RGSGSQVVQQFGIPH-LFDLPIR 379 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~~ 379 (516)
....+++.+.++... ...+|..
T Consensus 143 ~~~~~~i~~~l~~~~~~~~iPis 165 (691)
T PRK12739 143 FRSVEQIKDRLGANAVPIQLPIG 165 (691)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135677777776532 3446653
No 194
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.11 E-value=0.013 Score=56.17 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCC------CcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G------~rVllID~D~ 212 (516)
.++.++ |..|+|||+++.++|...+..| .+|+.||.+-
T Consensus 20 ~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 466666 8999999999999999988777 8999999974
No 195
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.0081 Score=55.52 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
|+|. |..|+||||+|..|+..|...|.+|.+|..|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5555 8999999999999999999999999999998654
No 196
>PRK15453 phosphoribulokinase; Provisional
Probab=95.97 E-value=0.013 Score=57.48 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=37.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
..+|+|+ |-.|+||||++..|+..|.+.|.++.+|+.|-+..
T Consensus 5 ~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4588887 88999999999999999988888999999998764
No 197
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=95.97 E-value=0.032 Score=56.15 Aligned_cols=39 Identities=38% Similarity=0.552 Sum_probs=35.4
Q ss_pred eEEEEEeCC-CCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.||+|.|-- ||+|||.++.-||..|.++|++|.+|.=..
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 489999887 999999999999999999999999997644
No 198
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=95.97 E-value=0.15 Score=48.90 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=95.2
Q ss_pred CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc----cc-----------------ccCCCC-C----
Q 010156 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LL-----------------EMNPEK-R---- 235 (516)
Q Consensus 182 KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~----~~-----------------~~~~~~-~---- 235 (516)
-.|.||=.+|+.++..|..+|++|..+-.||+-+--+..+.+... .. +..... .
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 567899999999999999999999999999987544333332110 00 000000 0
Q ss_pred -----ceeeecc------CCceEEcCCCCCCcccccCCccHHHHHHHHHHhc-ccCCCCEEEEcCCCCCChhhhh-----
Q 010156 236 -----TIIPTEY------LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTT-EWGELDYLVIDMPPGTGDIQLT----- 298 (516)
Q Consensus 236 -----~i~~~~~------~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~yD~VIID~pp~~~~~~~~----- 298 (516)
.+...+. .-+.++| .....+++.+... ...++|++|+..+...||.--.
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQviP--------------Hit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EA 155 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQVIP--------------HITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEA 155 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEECc--------------CccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHH
Confidence 0000000 0122222 1223333333222 1268999999999988874211
Q ss_pred hhhh---cCCCeE------EEEeC--CCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHH
Q 010156 299 LCQV---VPLTAA------VIVTT--PQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ 367 (516)
Q Consensus 299 ~~~~---~~~d~v------iiV~~--p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (516)
+.++ ...+.+ +++.. ....-..-++..++.++..|++..++|+|.- + .......+.++.-
T Consensus 156 irq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse--~-------pL~e~~keKIAlF 226 (255)
T cd03113 156 IRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSE--K-------PLPPEIREKIALF 226 (255)
T ss_pred HHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCC--C-------CCchHHHHHHHHh
Confidence 1111 011111 22211 2333344567788899999999999999861 1 1223445566555
Q ss_pred hCCCeEEecCC
Q 010156 368 FGIPHLFDLPI 378 (516)
Q Consensus 368 ~g~~~l~~IP~ 378 (516)
.+.+..+.++.
T Consensus 227 cnVpve~VI~~ 237 (255)
T cd03113 227 CDVPPEAVISA 237 (255)
T ss_pred cCCCHHHeeec
Confidence 67776555553
No 199
>PHA02542 41 41 helicase; Provisional
Probab=95.97 E-value=0.0095 Score=63.48 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=36.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
-+.+.++..|+||||++.|+|...++.|++|++++++....
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 45566699999999999999999999999999999998553
No 200
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.95 E-value=0.011 Score=60.93 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=32.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+..+..|+||||++..+|..+++.|.+|+.|+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4455599999999999999999999999999999864
No 201
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.94 E-value=0.24 Score=55.76 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=60.6
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|+++.+.++|||+-..........+..+|.+++|+.....-.......++.+.+.+.+++ +++|+++..... -
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------~ 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN------F 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998754322222233456799999988765433445567777777888876 788997644211 0
Q ss_pred CchHHHHHHHhCCCe-EEecCCC
Q 010156 358 RGSGSQVVQQFGIPH-LFDLPIR 379 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~~ 379 (516)
....+++.+.++... ...+|..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135677777777543 3456654
No 202
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.18 Score=49.95 Aligned_cols=167 Identities=18% Similarity=0.220 Sum_probs=104.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.+++++.+.---+||=|++..|..++-..|.++..+-.+..+- + . ...|+-+ .
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgi----l-----------------~--~~~gvvv-d--- 200 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGI----L-----------------I--ADDGVVV-D--- 200 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceee----E-----------------E--ecCceEe-c---
Confidence 5789999999999999999999999999999999998876441 1 0 0111110 0
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcchHH--------
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI-------- 320 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~----~~~~~~~~~d~viiV~~p~~~s~~-------- 320 (516)
.+........++.+...+...++|||+|-.-.++.... +....-.+-|.++++-.|......
T Consensus 201 ------av~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~ 274 (339)
T COG3367 201 ------AVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPP 274 (339)
T ss_pred ------chhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCC
Confidence 00112233455555544442489999999877654332 223333456888888887665433
Q ss_pred --HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 321 --DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 321 --~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
+...+.+.+. +.+++|+.+|--+.+.. .-++..+++..+||+|..-.+.+..
T Consensus 275 leevi~l~e~l~--~a~Vvgi~lNtr~~dE~------~are~~a~l~~efglP~~Dp~~~~~ 328 (339)
T COG3367 275 LEEVIALYELLS--NAKVVGIALNTRNLDEE------EARELCAKLEAEFGLPVTDPLRFGE 328 (339)
T ss_pred HHHHHHHHHHcc--CCcEEEEEecccccChH------HHHHHHHHHhhccCCccccccccch
Confidence 3334444443 37889999997444331 1235667777888877665555433
No 203
>PLN03127 Elongation factor Tu; Provisional
Probab=95.93 E-value=0.097 Score=55.57 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+++||||.--............+|.+++|+....--.......+..+...+++.+-+++|+++.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45678999998754332223333456899999998865444556778888888898876678899764
No 204
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.92 E-value=0.022 Score=58.91 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=37.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+++|.|+ +..|+||||+...|...|.++|++|.+|--|..+
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 57899998 7789999999999999999999999999987654
No 205
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.92 E-value=0.01 Score=55.07 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=37.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
||+.-.++-|-.|+||||.+.++-.+.-..|+++-+|.+||..-.
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH 45 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence 345545556889999999999999999999999999999997644
No 206
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.89 E-value=0.034 Score=51.52 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|.|+ +-.|.||||.|..+|...+..|+||++|=.=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45555 6678999999999999999999999999663
No 207
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.87 E-value=0.07 Score=51.09 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=45.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (516)
..|.+.|+|||+...........+..+|.+++|+....--.......++.+...+.++ -+++|+++
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~-ilviNKiD 136 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP-VLVINKID 136 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCC
Confidence 4678899999975543333344456789999998876654445566677776667774 47889965
No 208
>PRK06762 hypothetical protein; Provisional
Probab=95.87 E-value=0.011 Score=53.65 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.4
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
|+++|.++ |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 44566665 999999999999999888 4568888877543
No 209
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=95.86 E-value=0.0058 Score=49.54 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=24.0
Q ss_pred EEEe-cCeeEEEEcCCCCccccchhhhhcC
Q 010156 487 IRPM-GNYAVSITWPDGFSQVVCLILFHSK 515 (516)
Q Consensus 487 ~~~~-~~~~l~i~w~Dgh~s~y~~~~L~~~ 515 (516)
|.+. ++..|.|.|+||+++.|++.|||.+
T Consensus 3 i~l~~~~~~l~i~w~DG~~~~~~~~~LRd~ 32 (89)
T PF06155_consen 3 IKLDKDERHLEIEWSDGQESRFPYEWLRDN 32 (89)
T ss_dssp EEEECCTTEEEEEETTSEEEEEEHHHHHHT
T ss_pred EEEecCCCEEEEEECCCCEEEECHHHHhcc
Confidence 4433 4458999999999999999999975
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=95.84 E-value=0.14 Score=56.33 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=47.6
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
|+++.+.|+|||+...........+..+|.+++|+....--.......+..+...+++.+ +++|+++..
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~ 133 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRP 133 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 367889999998743322222233556899999988766544556666777777888875 788997643
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=95.83 E-value=0.048 Score=59.89 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=48.0
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
|+++.+.|||||+...........+..+|.+++|+....-........++.+.+.+++.+ +++|+.+.
T Consensus 61 ~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~ 128 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 128 (594)
T ss_pred ECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 467889999998643222122223456799999998876555667777888888888865 78899764
No 212
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.82 E-value=0.044 Score=48.93 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=37.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+.+.++|||+.-............+|.+++|+..+..-.......+..++..+.+.+-+|+|+++.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 4568899997632211122222345788999988765322333333444444455335578899764
No 213
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.81 E-value=0.014 Score=56.88 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=36.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
+|+|+ |-.|+||||++..|+..|.+.|.+|.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47776 78899999999999999999999999999998775
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.81 E-value=0.011 Score=50.48 Aligned_cols=32 Identities=41% Similarity=0.459 Sum_probs=24.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+|.|. |..|+||||+|..||..+ |..++-+|.
T Consensus 1 vI~I~-G~~gsGKST~a~~La~~~---~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIIS-GPPGSGKSTLAKELAERL---GFPVISMDD 32 (121)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---TCEEEEEHH
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH---CCeEEEecc
Confidence 35555 999999999999999887 666654443
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.80 E-value=0.013 Score=56.45 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~~ 213 (516)
.++.+. |..|+|||+++.++|...... +.+|+.||++..
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 456655 999999999999999876543 479999999863
No 216
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.79 E-value=0.19 Score=44.72 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|+|+...........+..++.++++.... ..++..+......+... +.+ +-+|.|+++.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 3467899999874332222222344567777765543 34455555555555442 455 4577899764
No 217
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.78 E-value=0.012 Score=54.66 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH----------CCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~----------~G~rVllID~D~~~ 214 (516)
+.+..+.+|+||||++.++|..++. .+.+|+.|+++...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 5566699999999999999999997 57899999999753
No 218
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.74 E-value=0.043 Score=60.29 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+|++|+|+ +..|+||||+...|...|.++|+||..|--|..+
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 36899998 6789999999999999999999999999986543
No 219
>PRK13351 elongation factor G; Reviewed
Probab=95.73 E-value=0.12 Score=58.23 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=61.6
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
|..+.+.|+|||+...........+..+|.+++|+.............++.+...+.+++ +++|+.+..... -
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~------~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGAD------L 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCC------H
Confidence 467789999998743322222333456799999988776544456677777877788866 788997643211 1
Q ss_pred CchHHHHHHHhCCCeE-EecCCC
Q 010156 358 RGSGSQVVQQFGIPHL-FDLPIR 379 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~~ 379 (516)
...++++.+.++.+.. ..+|..
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~~ 165 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPIG 165 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEeccc
Confidence 2467788888887544 345543
No 220
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.022 Score=50.04 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=41.9
Q ss_pred ccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 167 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
+.++..+-+|-++ +-.|+||||+|..|..+|-++|+-.-.+|.|--...+
T Consensus 25 ~l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 25 KLLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred HHhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 3455566788888 8899999999999999999999999999999755444
No 221
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.69 E-value=0.021 Score=53.99 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..+|++. |..|+||||++..|+..+ .+..+.+++.|...
T Consensus 6 ~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 6 PIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 4577776 899999999999999988 46689999998754
No 222
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.69 E-value=0.36 Score=43.99 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+-|+|+|+.-............+|.+++|...+ ..++..+...+..+... +.+ +.+|.|+++.....
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~---- 136 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQR---- 136 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcC----
Confidence 456789999863221112222244578888887765 45566666666555442 334 56888997643211
Q ss_pred ccCCchHHHHHHHhCCC
Q 010156 355 PFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (516)
....+...++.+.++.+
T Consensus 137 ~v~~~~~~~~~~~~~~~ 153 (180)
T cd04127 137 QVSEEQAKALADKYGIP 153 (180)
T ss_pred ccCHHHHHHHHHHcCCe
Confidence 11223455666666643
No 223
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.69 E-value=0.014 Score=52.23 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=32.6
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+..|..|+||||+|..|+..+...|.++.++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 3449999999999999999999999999999988754
No 224
>PRK09354 recA recombinase A; Provisional
Probab=95.67 E-value=0.024 Score=57.74 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++-|+ |..|+||||++.+++...++.|.+|+.||+.-
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 355555 78999999999999999999999999999975
No 225
>PF13245 AAA_19: Part of AAA domain
Probab=95.65 E-value=0.022 Score=44.66 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=29.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHC----CCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~----G~rVllID~ 210 (516)
+.+..+-.|+|||+++++++..+... |.+|+++-.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 45556899999999999999999865 889999843
No 226
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.64 E-value=0.6 Score=43.02 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (516)
.+++.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+-+|.|+.+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 4567889997743222122222446788888877654 45555666555555432 1235678899664
No 227
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.63 E-value=0.17 Score=49.89 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCCCCChh-hh-------hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDI-QL-------TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~-~~-------~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.++++|||+-.... .+ ....+..+|.+++|+..+...... ...++.+...+.+++ +|+|+++.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeC
Confidence 34568999998633210 00 112234678899998876543333 555666777777755 78899764
No 228
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.55 E-value=0.02 Score=56.20 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+.+..|..|+||||++.++|...+++|.+|+.++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34555599999999999999999999999999999984
No 229
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.53 E-value=0.25 Score=45.06 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.|.+.|+|+|+..............++.++++...+. .++..+....+.+.+ .+.++ -+|.|+++..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEchhhh
Confidence 4678899997742211121112334667776655443 455555555444432 34554 4888997643
No 230
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.50 E-value=0.019 Score=56.59 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=33.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~ 212 (516)
+.+..+..|+||||++.++|..++.. |.+|+.+.++.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 45556999999999999999999887 99999999976
No 231
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.50 E-value=0.023 Score=61.01 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=35.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.+.+|-.|+||||++.++++..+++|.+|+.+-.+..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 455666999999999999999999999999999999864
No 232
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.49 E-value=0.016 Score=56.55 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=32.0
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+..|-+|+||||+|..||..|...|.+|.++|.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 445999999999999999999999999999988753
No 233
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.47 E-value=0.4 Score=42.98 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
..+.+-|+|||+.-............+|.+++|..++. .+...+...++.+.+. +.++ -+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECccC
Confidence 35677889998643222222222456788888888754 4555666666666543 4554 488899764
No 234
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.43 E-value=0.069 Score=49.64 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+-.............+|.+++|+.............+......+.+++ +|+|+++.
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 57889999998642211111122234688888888765322222233334444566644 78899764
No 235
>PHA00729 NTP-binding motif containing protein
Probab=95.42 E-value=0.025 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La 199 (516)
.|.++ |..|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 45555 8899999999999999875
No 236
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.40 E-value=0.039 Score=52.66 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=41.9
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
++.+.+.|+|||+...........+..+|.+++|+...... .....+.+......+.+.+-+++|+.+..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 36788999999863222222222344578999998876531 12334444555556655566788997643
No 237
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=95.38 E-value=0.12 Score=51.33 Aligned_cols=164 Identities=17% Similarity=0.243 Sum_probs=94.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
..++|++.+.-.-+||=|++..|..+|.++|.++..+-....+-. . ...|+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGim----i-------------------a~~Gv------ 161 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIM----I-------------------AGYGV------ 161 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHH----C-------------------HSEC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEE----E-------------------ecCCe------
Confidence 568999999999999999999999999999999999988765411 0 00010
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCCcch--------
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQKLA-------- 318 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~-----~~~~~~~~~~d~viiV~~p~~~s-------- 318 (516)
.............++.+...... +.|+|||-.-.++... ++.+..-..-|.+|+.-.|....
T Consensus 162 ----~iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 162 ----PIDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred ----eccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 00112233455677777766543 5599999987766432 22333334568999998884432
Q ss_pred HHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 319 FIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 319 ~~~~~~~~~~l~~~~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+..+.+.++.++.+. .+++|+-+|-...+.. .-+...+++.+++|+|..-.
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~------e~~~~~~~~~~e~glPv~Dp 292 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEE------EAKAAIERIEEELGLPVTDP 292 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HH------HHHHHHHHHHHHH-S-EE-H
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCeeec
Confidence 234455555555432 3389999997443321 11245778888999876543
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.35 E-value=0.14 Score=53.60 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=46.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||.--............+|.+++|+....--.....+.+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999998743222222233445799999988776444556677777888888877678899764
No 239
>PRK05439 pantothenate kinase; Provisional
Probab=95.33 E-value=0.034 Score=55.80 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllID~D~~~ 214 (516)
.+.+|+|+ |-.|+||||+|..|+..|.+ .|.+|.+|..|-..
T Consensus 85 ~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34578877 88999999999999999986 37899999999654
No 240
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.32 E-value=0.031 Score=51.70 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=35.4
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+++.+|.+. |..|+||||++..|+..+...|..++++|.|.-.
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 344566665 8889999999999999998888889999887644
No 241
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.31 E-value=0.36 Score=43.11 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=37.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+-|+|+|+.-............++.+++|...+. .++..+....+.+.+ .+.++ -+|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-i~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccc
Confidence 3567789997643222222222345788877776554 455555554444432 24554 4778997643
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.30 E-value=0.037 Score=58.74 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=49.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (516)
++.+.+.|||||+...........+..+|.+++|+.+..--+ ..+.+.+..+...+++.+-+++|+.+
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 467889999999744333333344567899999988765322 35677788888889988888999976
No 243
>PRK12736 elongation factor Tu; Reviewed
Probab=95.28 E-value=0.13 Score=53.67 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.+||||..-............+|.+++|+....--.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 45678999998732222222333446799999988776444556677777888888877788999764
No 244
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.26 E-value=0.026 Score=54.53 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~ 213 (516)
+.+.++..|+|||+++.++|..++.. |.+|+.+.++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 44556999999999999999999987 999999999874
No 245
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.24 E-value=0.095 Score=53.33 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=35.8
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.||+|-|- -||+|||-++..||..|.++|++|.+|.=...+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 48888775 799999999999999999999999999866544
No 246
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.23 E-value=0.021 Score=58.03 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCCCC
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 215 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~~~ 215 (516)
++..|-.|+||||++..|+..|. ..|.+|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 56679999999999999999998 5899999999997543
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=95.23 E-value=0.12 Score=55.25 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+.|||+|..-.........+..+|.+++|+....--.....+.+..+...+++.+-+++|+.+.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 45678999998632222222333456799999988775545556777788888898877788999764
No 248
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.15 E-value=0.64 Score=42.29 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+......+.......+|.+++|...+ ..++..+....+.+.+ .+.+ +-+|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl 119 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDL 119 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhh
Confidence 456788999764332222222244578887776654 4566666655444443 2455 4578899764
No 249
>PRK15494 era GTPase Era; Provisional
Probab=95.13 E-value=0.24 Score=50.72 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCCh---hh--h---hhhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD---IQ--L---TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~---~~--~---~~~~~~~~d~viiV~~p~~~s~~~~-~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.++|+|||+.... .. + ....+..+|.+++|+.... ++... ...++.++..+.+.+ +|+|+++.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4456899999864221 00 0 0112346788888887654 22222 345666666666665 68899774
No 250
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.12 E-value=0.14 Score=44.70 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~-------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.++++++|+|+..... .........+|.+++|+.+..............+...+.+.+ +|+|+++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEcccc
Confidence 6789999998732211 111112345788888888777655544444555555666654 88899664
No 251
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.10 E-value=0.028 Score=52.55 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=31.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCc----EEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~r----VllID~D~~ 213 (516)
||+|+ |-+|+||||+|..|+..|.+.|.. +.++..|-.
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 57776 889999999999999999988876 677777653
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.07 E-value=0.043 Score=50.35 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=33.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+|.|. |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 3467766 88999999999999999998888899998664
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.032 Score=54.55 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.+-+.+. |+.|+|||.+|+.+|..|.+.|.+|+++..
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3456666 999999999999999999988999999865
No 254
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.05 E-value=0.9 Score=40.74 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=39.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (516)
.+.+.|.|+|+..............++.+++|...+. .++..+...++.+.... -..+-+|.|+++.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4678899997643221222222446788888877654 45666666666554432 1245678899764
No 255
>CHL00071 tufA elongation factor Tu
Probab=95.00 E-value=0.22 Score=52.32 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+++||||+--.........+..+|.+++|+.+..--.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 45678999998732212222333456799999998876544566677788888888867678899764
No 256
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.024 Score=52.59 Aligned_cols=37 Identities=30% Similarity=0.206 Sum_probs=32.3
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|-+|+||||.|-+||..|.+.+.+|.-+..|...
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 4459999999999999999999999999988887543
No 257
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.96 E-value=0.18 Score=46.21 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=30.0
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
..+.+...+ | .|=||||.|..+|...+-+|+||++|=+=
T Consensus 20 ~~Gli~VYt-G-dGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 20 IEGLVQVFT-S-SQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred CCCEEEEEe-C-CCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 334344433 3 56799999999999999999999999663
No 258
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.96 E-value=0.046 Score=41.88 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
|++. |-.|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 5555 889999999999999999 6788888876
No 259
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=94.96 E-value=0.21 Score=45.44 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+..............+|.+++|+..... +.... ..+..+...+.++ -+|+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~i-iiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLEI-IPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCCE-EEEEECCCC
Confidence 467788999986433222222234567999999887652 22222 2223333456664 578899764
No 260
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.95 E-value=0.36 Score=42.23 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (516)
..+++.++|+|+...........+..+|.+++++.++. .++..+...+..+.... .+ +-+|.|+++.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 35678999998753322222333456788888888765 45666666666666543 44 5688899765
No 261
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.028 Score=55.53 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=33.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH----CC------CcEEEEEcCCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPS 216 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~----~G------~rVllID~D~~~~~ 216 (516)
+..|.-+-||+||||++..|..+|+. .| .+|+.|.+....++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~ 141 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYRED 141 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHH
Confidence 45556699999999999999998883 25 47899988877654
No 262
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.90 E-value=0.037 Score=51.04 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+-+.+. |..|+|||.+|..+|..+.+.|++|+.++..
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 346666 6789999999999999999999999999874
No 263
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.87 E-value=0.042 Score=53.88 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~ 214 (516)
-+.+.++..|+|||+++.++|..++.. |++|+.+.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 355666999999999999999999997 6999999998744
No 264
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=94.86 E-value=0.087 Score=53.44 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=34.8
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.||+|-|- -||+|||-++..||..|.++|++|.+|.=..
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 58888876 7999999999999999999999999997644
No 265
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.83 E-value=0.35 Score=40.73 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=37.4
Q ss_pred CCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 010156 280 ELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (516)
Q Consensus 280 ~yD~VIID~pp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (516)
...++|+|||+-... ..........+|.+++|+..+...-.....+++.++ .+.+ +-+|+|+
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 446789999884321 001222234678888888877733345667777775 3444 5577774
No 266
>PTZ00416 elongation factor 2; Provisional
Probab=94.80 E-value=0.12 Score=59.15 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=48.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+|-+.+||||+...........+..+|.+++|+.+..--......+++.+.+.+.+++ +++|+.+..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35678999999755433333444567899999998777555566788888888888765 667997643
No 267
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.79 E-value=0.056 Score=52.07 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++.+. |..|+||||++.+++..+++.|.+++.++++..
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 356665 999999999999999999999999999998753
No 268
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.78 E-value=0.075 Score=57.55 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~ 214 (516)
.++.+. |-.|+|||+++.++++..+++ |.+|+.|.++...
T Consensus 32 s~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 32 RPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 466665 899999999999999988877 9999999998743
No 269
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.76 E-value=0.4 Score=42.96 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=37.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
+++.+.++|+|...............++.+++|+..... ++......+..+.+ .+.+ +-+|+|+++.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 456789999975322222222224467888888876543 34444444443322 3566 4578899764
No 270
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.73 E-value=0.51 Score=42.45 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.|.|+|+..............+|.++++... +..++..+.+.+..+.+. +.+ +-+|.|+.+.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 35678899987433222222224467888888765 345566666666655543 344 4577898664
No 271
>COG1159 Era GTPase [General function prediction only]
Probab=94.73 E-value=0.25 Score=48.67 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=71.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (516)
.+++. |+..|||||+.-+| .|.||.++.-=+|..- ..+. |+..
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR------------------~~I~-----GI~t------- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTR------------------NRIR-----GIVT------- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhh------------------hhee-----EEEE-------
Confidence 57888 99999999996544 4899999876665421 0010 1100
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
.+++.+|+||||+-..+-. .....+..+|.+++|+..+..--..-...+
T Consensus 51 -----------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 51 -----------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred -----------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 1578899999987432211 112234467889999888875444666778
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 010156 327 RMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+++.+.+++ +++|+++.
T Consensus 108 ~~lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HHHhhcCCCeE-EEEEcccc
Confidence 88887666765 56699763
No 272
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.72 E-value=0.44 Score=44.13 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 3567899998743222222222345788888877654 4555666666665543 344 4577899764
No 273
>PRK06526 transposase; Provisional
Probab=94.71 E-value=0.023 Score=55.57 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
-+.++ |.+|+|||+++.++|..+.+.|++|+.+.+
T Consensus 100 nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 45555 899999999999999999999999987544
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.71 E-value=0.42 Score=45.80 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
...++++|||.... ..+ .....+|.+++++.....-......+++.+...+.+.+-+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~~-~~l--~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDIN-AMI--DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchHH-HHH--HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 34578999986431 112 22345788888887765444445567788877787755568899764
No 275
>PRK12735 elongation factor Tu; Reviewed
Probab=94.70 E-value=0.22 Score=52.06 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
++..++|+|||..-.........+..+|.+++|+....--.....+.+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45568999998742222222233456799999988766434455677777888888877678899765
No 276
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.66 E-value=0.26 Score=52.81 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+..+.|+|||+-.... ......+..+|.+++|+.........-....+.++..+.+++ +|+|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 45568899997732110 011122446899999988765432233456677777777755 77799764
No 277
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.64 E-value=0.44 Score=44.51 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
+.+.|+|+|+.-....+.......++.+++|.... ..++..+...++.+... ..+ +-+|.|+.+.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 45789999764322222222234567788887764 45566666666666543 234 4578899764
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.63 E-value=0.062 Score=51.78 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.++ +-.|+|||+++.++++..+++|.+|+.++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 356665 89999999999999999888999999999974
No 279
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.62 E-value=0.048 Score=52.13 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=32.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllID~D~~~ 214 (516)
+|++. |-.|+||||++..|+..|.. .+.+|.+|-.|-..
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 36666 88999999999999999976 56789999888653
No 280
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.60 E-value=0.062 Score=52.75 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
.++++|. |-.|+|||+++.+++...++.|.+|+.|.++....
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~ 64 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPE 64 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHH
Confidence 3466665 99999999999999999999999999999997543
No 281
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.57 E-value=0.32 Score=45.74 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+-+.|+|||+...........+..+|.+++|+..... ........+..+...+.+.+-+|+|+.+.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6689999987432222223334456899999887652 11233345555555565545578999764
No 282
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.53 E-value=0.07 Score=51.17 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
..+.+. +..|+||||++.+++...++.|.+|+.++++..
T Consensus 21 ~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 456665 899999999999999988888999999998653
No 283
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.49 E-value=0.39 Score=43.06 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
+.+.|+|+|+..............+|.++++...+. .++..+...++.+... +.+ +-+|.|+++.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 120 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDL 120 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 578999998743222222222345788888877655 3556666666665543 344 4578899764
No 284
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.43 E-value=0.055 Score=57.13 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=33.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~ 213 (516)
+.+.++..|+|||+++.++|..+| +.|++|+++.++..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 445569999999999999999998 67999999998863
No 285
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.38 E-value=0.66 Score=41.20 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=39.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.++|+|+.-.........+..+|.+++|..+.. .+...+.+.+..+... +.+ +-+|.|+++.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 3567899998743222222223456888888887765 3555555555555442 344 4577799764
No 286
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.37 E-value=1.2 Score=42.41 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~-~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.- ...... ... .+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~-~~~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 49 ESTLVVIDHWEQE-MWTEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEeCCCcc-hHHHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 4668899997753 111111 122 5788888877654 4666666666666543 345 4578899764
No 287
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.35 E-value=0.31 Score=51.49 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+..+.|+|||+-.... ......+..+|.+++|+.....-...-....+.+++.+.+++ +|+|+++..
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~ 120 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGK 120 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCC
Confidence 44568899997632110 011222445788888888765333333456677777777755 677997643
No 288
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.33 E-value=0.56 Score=41.69 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
..+++.|+|+|+.-....+.......+|.+++|...+. .++..+...++.+.+ .+.++ -+|.|+.+......
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~---- 123 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPM-VLVQTKIDLLDQAV---- 123 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhcccccC----
Confidence 35678999998743222222222446788777766543 455555555555543 25664 47889976533211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+.+.+.++.+
T Consensus 124 v~~~~~~~~~~~~~~~ 139 (162)
T cd04106 124 ITNEEAEALAKRLQLP 139 (162)
T ss_pred CCHHHHHHHHHHcCCe
Confidence 1123345566666654
No 289
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.28 E-value=0.06 Score=50.40 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=30.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+|+++ |-.|+||||++..|+..+ .+.++.++.+|...
T Consensus 1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 35666 789999999999999988 56689999999644
No 290
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.27 E-value=0.086 Score=53.21 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=30.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~~ 213 (516)
.|+-..|..|+|||+++.++|...+. .|.+|+.||+.-.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 34444599999999999999976542 3679999999753
No 291
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.23 E-value=0.22 Score=52.84 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=49.2
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
++.+-+.|||||+.-.........+..+|.+++|+....-.+ ..+.+.+..+...+++.+-+++|+.+.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 367789999998743333333444567899999988876433 356677777788899877788999763
No 292
>PRK09183 transposase/IS protein; Provisional
Probab=94.20 E-value=0.072 Score=52.30 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=30.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
..+.++ |..|+|||+++..+|..+...|++|+.+++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 345566 889999999999999998889999998864
No 293
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.18 E-value=0.94 Score=40.91 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|+|+......+.......++.+++|+..... ++..+...+..+.+. +.+ +-+|.|+.+.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 456789999987432222222234567889998887654 455565555555432 445 4588899764
No 294
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.23 Score=51.25 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
.++-+=|+|||+.-...-.+.-.+.++|.+++|+..-.---..+.++.+.++.-++|++-+| |+.+...+.. -
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rdP------~ 151 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRDP------L 151 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCCh------H
Confidence 44556789999854322222333667899999998876655677888888888899988666 9865444331 2
Q ss_pred chHHHHHHHhCCC
Q 010156 359 GSGSQVVQQFGIP 371 (516)
Q Consensus 359 ~~~~~~~~~~g~~ 371 (516)
+.+.++++.+++.
T Consensus 152 ELLdEiE~~L~i~ 164 (528)
T COG4108 152 ELLDEIEEELGIQ 164 (528)
T ss_pred HHHHHHHHHhCcc
Confidence 5788999998753
No 295
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=94.14 E-value=0.75 Score=41.09 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+......+.......+|.+++|...+ ..++..+.+.+..+.+ .+.|+ -+|.|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCcch
Confidence 456678999764322222222234568888776654 3455556555555532 24554 5888997653
No 296
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.14 E-value=0.099 Score=49.98 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.+. +..|+|||+++.+++...+++|.+|+.++++.
T Consensus 17 ~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 17 HVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466665 77999999999999999888999999999986
No 297
>PRK05595 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.07 Score=56.74 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~ 213 (516)
-+.+.++..|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3556669999999999999999887 57999999999763
No 298
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.05 E-value=0.066 Score=52.82 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=27.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.|.+ .|-+|+||||+|..|+..|...|.+|.+|+.|.
T Consensus 3 Liil-~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIIL-CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEE-E--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4444 599999999999999999999999999999654
No 299
>PRK06217 hypothetical protein; Validated
Probab=94.05 E-value=0.07 Score=49.35 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.|.|+ |-.|+||||++..||..| |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 457766 889999999999999876 544 678774
No 300
>PRK12377 putative replication protein; Provisional
Probab=94.00 E-value=0.083 Score=51.43 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
-+.++ |..|+|||+++..+|..|.+.|++|+.+...
T Consensus 103 ~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 45555 8899999999999999999999999998774
No 301
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=93.96 E-value=0.75 Score=42.49 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+++......+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 345677887643211111111335788888876643 4555555666666544 355 4578899764
No 302
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=93.94 E-value=0.71 Score=43.74 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~-----~~~~gvV~N~~~~~~~~~~~ 353 (516)
.+.+.|.|+++.-....+...-...+|.+++|...+. .++..+...++.+.+.. ...+-+|.|+.+.....
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--- 125 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--- 125 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc---
Confidence 3567899997632111111122346788888877654 36666666666665431 12466788997653211
Q ss_pred cccCCchHHHHHHHhCC
Q 010156 354 YPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (516)
....+....+.+.++.
T Consensus 126 -~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 126 -TVKDDKHARFAQANGM 141 (215)
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1112344556666654
No 303
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.92 E-value=0.1 Score=48.62 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.|+|. |--|+||||++..||..|...|++|..+-.
T Consensus 4 ~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 567776 889999999999999999999999977643
No 304
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.91 E-value=1.2 Score=39.91 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+-|+|+|+..............+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|+.+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 3557789997643222222222345788888877644 4555666555555543 344 4577899664
No 305
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.91 E-value=0.092 Score=48.69 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+|+|. |--|+||||++-.|+..|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56776 889999999999999999999999976654
No 306
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.91 E-value=0.95 Score=40.16 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+|+.-....+.......++.+++|...+ ..++..+....+.+.+. +.+++ +|.|+++.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 118 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV-LVGNKCDL 118 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 45677899764322112111234567777776554 44566666655555432 45544 78899764
No 307
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.88 E-value=0.22 Score=46.66 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=62.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-eccCCceEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGFS 253 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~~~ 253 (516)
.+.+- |--|+|||-++..+++.+-..|++|.++-....- ..++. .+....-.+.+ .-...+.++|....
T Consensus 30 L~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~---refi~------qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 30 LILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV---REFIK------QMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred EEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEechhH---HHHHH------HHHhcCCCchHHHhcceeEEEEeccc
Confidence 44544 8899999999999999999999999999875421 11110 01111111111 11234566664322
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEcC
Q 010156 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 288 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~ 288 (516)
...|........|+.+++..+..++|+||||+
T Consensus 100 ---~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDS 131 (235)
T COG2874 100 ---PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDS 131 (235)
T ss_pred ---ccccChHHHHHHHHHHHhhHHhhcCCEEEEec
Confidence 22344444556777777777667899999999
No 308
>PRK08118 topology modulation protein; Reviewed
Probab=93.88 E-value=0.07 Score=48.67 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
|+.|.|+ |-+|+||||+|..|+..+
T Consensus 1 m~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 1 MKKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3457777 889999999999888766
No 309
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.86 E-value=0.37 Score=47.80 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+|.++ +..|+||||+...|...|... +++.+|+.|...
T Consensus 105 ~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 105 LVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 477777 889999999999999988665 589999888743
No 310
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.85 E-value=0.79 Score=40.83 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
..+.+.++|+|+......+.......+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|+++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 34678999997532111111222345788888877654 3455555666665543 344 4577899764
No 311
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.84 E-value=0.85 Score=41.17 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~-~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
..+++-|+|+|+.-... .+.......+|.+++|..++. .++..+...++.+... +++ +-+|.|+.+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34678899997632211 111112335688888877754 4566666666555542 355 4578899764
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.82 E-value=0.12 Score=50.03 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=33.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++.|. |-.|+|||+++.++++..+++|.+|+.|.++..
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 355555 999999999999999998899999999999863
No 313
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.81 E-value=0.097 Score=49.91 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.|.++ |..|+|||+++..++..+.+.|.+++.++++..
T Consensus 40 ~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 40 FLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 56666 899999999999999999888999999998653
No 314
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=93.80 E-value=0.54 Score=53.24 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=44.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.++.+.|+|||+......+.......+|.+++|+..+.-........+..+...++++ -+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPi-IVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPI-IVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcE-EEEEECccc
Confidence 3466899999875332223233344578899998776544455566677777788884 478899764
No 315
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.79 E-value=0.75 Score=40.92 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+..............+|.++++..++. .++..+...++.+.... .+ +-++.|+.+.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 118 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADL 118 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 4567899997643222222222345788888887653 45666666666665543 33 4567898653
No 316
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.79 E-value=2.4 Score=39.82 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
.+.+-|.||++.-....+...-...+|++++|...+ ..++..+...++.+++. +.+ +-+|.|+++..
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~ 118 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 467889999764322222222244678888887654 45777777666666543 344 56788997753
No 317
>PRK08506 replicative DNA helicase; Provisional
Probab=93.77 E-value=0.089 Score=56.28 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+.++..|+|||+++.|+|...++.|++|+++.+....
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 555569999999999999999999999999999998643
No 318
>COG4240 Predicted kinase [General function prediction only]
Probab=93.71 E-value=0.095 Score=49.44 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllID~D~ 212 (516)
.|..+||-.|+||||+++.+-..|+++| .+|+-+.+|-
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 4555669999999999999999999988 7999998874
No 319
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.70 E-value=3.3 Score=39.13 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-....+.......+|.+++|...+. .++..+...++.+.+. ....+-+|.|+.+..... .
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~ 126 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----Q 126 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----c
Confidence 3567899997643222222222345788888877654 4666666666655432 223456788996643211 1
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+...++.+.++.
T Consensus 127 v~~~~~~~~~~~~~~ 141 (211)
T cd04111 127 VTREEAEKLAKDLGM 141 (211)
T ss_pred cCHHHHHHHHHHhCC
Confidence 122334555555553
No 320
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.68 E-value=0.71 Score=41.25 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+......+.......++.+++|.... ..++..+.+.++.+.+. +.+ +-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 356788999764322222222234567777776654 45666666666666543 233 4577899764
No 321
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=93.67 E-value=0.21 Score=50.06 Aligned_cols=41 Identities=34% Similarity=0.553 Sum_probs=36.3
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.||+|-|. -||.|||-++..||..|.++|.++.++.=...+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 47888775 799999999999999999999999999877655
No 322
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.65 E-value=0.12 Score=49.70 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=32.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEE-EEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll-ID~D~~ 213 (516)
..+|++. |..|+||||++-.|+..+...+..+.+ |.+|..
T Consensus 33 ~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 33 RTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3477776 999999999999999999987767666 777653
No 323
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.65 E-value=0.73 Score=41.52 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
..+.|+|+|+.-............+|.+++|.... ..++..+...+..+++. +.+ +-+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 35788998774322222222234578888887764 45666666666655543 344 4577798664
No 324
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.64 E-value=0.12 Score=44.56 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=32.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+.++ |..|+||||++..++..+...+.+|..+++....
T Consensus 21 ~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 21 NLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45555 9999999999999999998888899999886543
No 325
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.64 E-value=1.3 Score=39.41 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCh---------hh--hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD---------IQ--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~---------~~--~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+..++.++|||+.... .. ........+|.+++|+.............++.+...+.+++ +|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEecccc
Confidence 3456889999773211 00 01112335688888887655433334455566655566644 78899753
No 326
>COG1160 Predicted GTPases [General function prediction only]
Probab=93.64 E-value=0.63 Score=48.51 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=41.3
Q ss_pred cCCCCEEEEcCCCCC-Ch---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 278 WGELDYLVIDMPPGT-GD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 278 ~~~yD~VIID~pp~~-~~---~-----~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
|....+.+|||++-. ++ . ..+..++..+|.+++|+....--...=..+.++|+..+.+++ +|+|+++..
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~ 125 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNL 125 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCc
Confidence 466779999997633 11 1 012233556898999888765222222455666776666755 666997643
No 327
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.64 E-value=1 Score=40.39 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=38.1
Q ss_pred CEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 010156 282 DYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (516)
Q Consensus 282 D~VIID~pp~~~~-------~~~~~~~~~~~d~viiV~~p~~~--s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 346 (516)
.+.++|||+-... .......+..+|.+++|+..... +...+....+.+.+. +.++ -+|+|+++.
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl 126 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDL 126 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhc
Confidence 6889999873210 01111122347889998887764 556666666655543 3444 478899764
No 328
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.61 E-value=3.8 Score=38.15 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEecccccCCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADG 350 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~~~~ 350 (516)
..+.+.|.|+|+.-....+.......++++++|...+ ..++..+......+.. .++++ -+|.|+.+.....
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pi-ilv~NK~Dl~~~~ 126 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPC-LLLANKCDLKKRL 126 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEEECCCccccc
Confidence 3567889999874322222222244678888887765 4456666555544432 23454 5788997753211
Q ss_pred ccccccCCchHHHHHHHhC
Q 010156 351 KRYYPFGRGSGSQVVQQFG 369 (516)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g 369 (516)
....+.++++.+..+
T Consensus 127 ----~~~~~~~~~~~~~~~ 141 (201)
T cd04107 127 ----AKDGEQMDQFCKENG 141 (201)
T ss_pred ----ccCHHHHHHHHHHcC
Confidence 112234555665555
No 329
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.52 E-value=0.11 Score=55.31 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+.+|..|+||||++.++|..+++.|.+|+.|+...
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 4455699999999999999999999999999999874
No 330
>PRK08760 replicative DNA helicase; Provisional
Probab=93.51 E-value=0.092 Score=56.19 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
-+.|.++..|+|||+++.|+|...|. .|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 35555699999999999999999985 59999999988643
No 331
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.38 Score=53.63 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=67.2
Q ss_pred cC-CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 010156 278 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 278 ~~-~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
|. +|.+-|||||+......-...++..+|++++|+....--...+...++++.+.+++.+ +++|+++.-. ..+
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~~--a~~--- 145 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRLG--ADF--- 145 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccccc--cCh---
Confidence 45 4889999999977554444445667899999999887777778889999999999977 4559965322 111
Q ss_pred CCchHHHHHHHhCCCe-EEecCCCh
Q 010156 357 GRGSGSQVVQQFGIPH-LFDLPIRP 380 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~~-l~~IP~~~ 380 (516)
....+++.+.++.+. ...+|...
T Consensus 146 -~~~~~~l~~~l~~~~~~v~~pIg~ 169 (697)
T COG0480 146 -YLVVEQLKERLGANPVPVQLPIGA 169 (697)
T ss_pred -hhhHHHHHHHhCCCceeeeccccC
Confidence 245778888887543 34466543
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.50 E-value=0.11 Score=55.09 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+..|..|+||||++..+|..+++.|.+|+.++...
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4455599999999999999999999999999999864
No 333
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.48 E-value=0.29 Score=56.33 Aligned_cols=66 Identities=12% Similarity=-0.000 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.|-+-|||||+..........++..+|.+++|+....--.....++++.+.+.+++++ +++|+.+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~ 162 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCcc
Confidence 4556799999754443334444667899999998776545566778888888888865 77799654
No 334
>PLN03110 Rab GTPase; Provisional
Probab=93.47 E-value=2.9 Score=39.65 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=38.8
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
+.+-|.|+++......+.......++.+++|.... ..++..+...+..+.+. +++ +-+|.|+++.
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 129 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDL 129 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhc
Confidence 46778899764322222222244678788887764 44566666666666543 344 4577899764
No 335
>PRK06749 replicative DNA helicase; Provisional
Probab=93.45 E-value=0.1 Score=55.14 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=34.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.|.++..|+|||+++.|+|...|+.|++|+++.+....
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 455569999999999999999999999999999888744
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.43 E-value=0.15 Score=50.79 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC--CCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllID~D~~~ 214 (516)
+.+|+|+ |-.|+||||++..|+..+.+. +.+|.++..|...
T Consensus 62 p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4578887 889999999999998888753 4579999998754
No 337
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.37 E-value=0.12 Score=49.45 Aligned_cols=38 Identities=34% Similarity=0.345 Sum_probs=34.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~ 212 (516)
+-++|. |.-|+|||+++..|...+. +.|.+|+++|..-
T Consensus 24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 568888 8999999999999999999 8899999998753
No 338
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=93.36 E-value=0.73 Score=52.31 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCCCEEEEcCCCCCChhh----------hh--hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQ----------LT--LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~----------~~--~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++++.++|+|+..+... .. ......+|.+++|+..+.. .........+.+.+.+++ +++||.+.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvI-vVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCI-VALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEE-EEEEchhh
Confidence 567889999987432110 00 1111257888888887653 222334556667788854 77799775
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..... . ....+++.+.+|.|++..
T Consensus 125 ~~~~~----i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 125 AEKQN----I-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred hhccC----c-HHHHHHHHHHhCCCEEEE
Confidence 32211 1 134677888999886654
No 339
>PLN02924 thymidylate kinase
Probab=93.34 E-value=0.15 Score=48.70 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=34.1
Q ss_pred ccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 169 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
..++++.|+|- |--|+||||.+..|+..|...|++|.++.
T Consensus 12 ~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 12 VESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 34556788887 88999999999999999999999986654
No 340
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.34 E-value=5.6 Score=37.91 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
..|++.|+|+++.-....+.......+|.+++|...+. .++..+...+..+.+. +. .+-+|.|+++..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~-piIlVgNK~DL~ 113 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC-LFAVVGNKLDLT 113 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccc
Confidence 35678999998643322222222445788888877554 4666665544444432 23 356888997753
No 341
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.32 E-value=1.5 Score=38.85 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=38.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCC-------CCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK-------VPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~-------~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+.-............+|.+++|..++.. ++..+...+..+.+.. ...+-+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 356788999987422211211123457888888876543 4555555555554321 1235677899764
No 342
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.31 E-value=0.1 Score=52.92 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+-+.++ |..|+|||+++..+|..+.++|++|+.+.++-
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 456666 88999999999999999999999999998853
No 343
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.29 E-value=0.093 Score=47.62 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.|.++ |..|+||||+|..||..| |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 456655 999999999999999988 43 3557663
No 344
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=93.29 E-value=3.6 Score=38.66 Aligned_cols=96 Identities=6% Similarity=-0.073 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHc----------------------CCCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----------------------LKVP 335 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~----------------------~~~~ 335 (516)
..|.+-|.|+++.-....+...-...++.+++|... +..++..+...++.+.+ .++|
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 346678899976433222222223457888888664 44567777666555533 1344
Q ss_pred EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 336 CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 336 ~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
+-+|.|+++..................+++++|.+-+..
T Consensus 132 -iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 132 -LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINL 170 (202)
T ss_pred -EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEE
Confidence 458999977532211000001112346677888775544
No 345
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.29 E-value=1.4 Score=39.11 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-CC--CCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-LK--VPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-~~--~~~~gvV~N~~~~ 346 (516)
+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+.. .+ .+ +-++.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhc
Confidence 457899998743322222222345688888877654 345666666665543 22 44 5688899765
No 346
>PTZ00035 Rad51 protein; Provisional
Probab=93.28 E-value=0.17 Score=51.56 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~ 212 (516)
+.++.++ |..|+||||++..++..... .+.+|+.||...
T Consensus 118 G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 118 GSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 3455555 89999999999999877652 467999999864
No 347
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.28 E-value=0.19 Score=56.39 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.|+...|-.|+||||++.+++...++.|.+|+.||+.-..
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~ 100 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL 100 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch
Confidence 3444558999999999999999988999999999997643
No 348
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.27 E-value=0.15 Score=51.27 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+++-+++ ..|+||||++..+...+.+.|..++.||....
T Consensus 53 G~ivEi~G-~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYG-PESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEE-STTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeC-CCCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 67888885 46899999999999999889999999999653
No 349
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.27 E-value=2 Score=45.49 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~---------~--~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+.++.++|||+.... . ..+...+..+|.+++|+.........-.+.+..+.+.+.+++ +|+|+++.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 4567899999873210 0 011122446789999988776444444566666766677654 78899764
No 350
>PF13173 AAA_14: AAA domain
Probab=93.24 E-value=0.13 Score=44.61 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+++.+. |--||||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 455665 7888999999999998887 56789999998643
No 351
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.22 E-value=0.82 Score=41.49 Aligned_cols=67 Identities=9% Similarity=-0.080 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCC---CEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV---PCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~---~~~gvV~N~~~~ 346 (516)
.+.+.|.|+|+......+.......+|.+++|...+. .++......++.+.+... ..+-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 3467899998643222222233456788888887754 456666666665533221 235688899764
No 352
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.22 E-value=0.12 Score=51.97 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.+|+|+...-|+|||+++.-+|+.|..+|+||++|-.
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred ceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 4899999999999999999999999999999999977
No 353
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.21 E-value=1.5 Score=38.85 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-............+|.+++|..++. .+...+...+..+... +.+ +-+|.|+.+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 4568899998742211122222346788888877654 3555555555554432 444 5678898654
No 354
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.20 E-value=0.12 Score=49.56 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=31.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~ 213 (516)
++.+. |-.|+|||+++.++++..+++ |.+|+.|.++..
T Consensus 21 ~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 21 VVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred EEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 55555 899999999999999999988 999999999864
No 355
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=93.17 E-value=2.1 Score=38.35 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-....+.......++.+++|...+ ..++..+...++.+.+. +.+ +-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE 120 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence 456789999875433322222234567777776654 34566666666655542 355 4578899764
No 356
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.15 E-value=0.13 Score=51.71 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+-+.++ |..|+|||.++..+|..|+++|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 445555 8899999999999999999999999999774
No 357
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.07 E-value=0.37 Score=53.26 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=44.9
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.-+-|||||+.-............+|.+++|+..+..-.......+..+...+.+.+-+|+|+++.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 346799998632221222333456799999988776555566667777888888876789999764
No 358
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.05 E-value=1.4 Score=41.04 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=35.4
Q ss_pred CCCEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~---~-----~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.++|+|||+-... . .........+|.+++|...... +........+++... +.+ +-+|+|+++.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEcccc
Confidence 347889999763211 0 0011113357888888776543 333343444455443 344 5678899764
No 359
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=92.99 E-value=6.6 Score=35.98 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|+|..-............+|.+++|+..+. .++..+...+..+ .. .+.+ +-+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCC
Confidence 45678999998642222222222456788888887654 3455555444433 22 1344 5588899664
No 360
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.99 E-value=0.13 Score=48.61 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+.+|+|. |..|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4577777 89999999999999987754 45667777664
No 361
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.99 E-value=0.14 Score=54.25 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
+.+.++..|+|||+++.++|..++. .|++|+++.++...
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 5555699999999999999999986 69999999998743
No 362
>PRK08006 replicative DNA helicase; Provisional
Probab=92.95 E-value=0.14 Score=54.70 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~ 213 (516)
-+.|..+..|+|||+++.|+|..+|. .|++|+++.+...
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 34455599999999999999999984 6999999988864
No 363
>PF05729 NACHT: NACHT domain
Probab=92.92 E-value=0.12 Score=46.30 Aligned_cols=26 Identities=38% Similarity=0.274 Sum_probs=22.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCC
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMG 202 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G 202 (516)
.+..|.+|+||||++..++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 34459999999999999999999865
No 364
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.89 E-value=0.33 Score=55.03 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=45.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+|-+.|||||+...........+..+|.+++|+....--.......++.+.+.+.+.+ +++|+.+.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECchh
Confidence 45678999999754332223334556799999988765444456677777666677764 77899764
No 365
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.88 E-value=0.17 Score=46.25 Aligned_cols=34 Identities=41% Similarity=0.515 Sum_probs=24.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
|-|+.+ -|=||||-|..+|...+-.|+||+++=+
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 344434 3569999999999999999999999865
No 366
>PRK08727 hypothetical protein; Validated
Probab=92.85 E-value=0.15 Score=49.28 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
-|.++ |..|+|||.++..++..+.+.|++|..+.++
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 35555 8899999999999999999999999999754
No 367
>PRK09866 hypothetical protein; Provisional
Probab=92.85 E-value=0.45 Score=51.96 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCh--hh---hhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCC--CEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD--IQ---LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKV--PCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~--~~---~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~--~~~gvV~N~~~~ 346 (516)
..+.+||||||+--.. .. ...-++..+|.+++|+..... +..+ ..+++.+++.+. + +-+|+|+++.
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~P-VILVVNKIDl 301 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVP-LYVLVNKFDQ 301 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCC-EEEEEEcccC
Confidence 3578999999874321 11 112245678999999988653 3333 456677776653 5 4578899875
No 368
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.85 E-value=0.26 Score=53.03 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~ 212 (516)
+++.|. |-.|+||||+|.++++.-+++ |.+++.|.++.
T Consensus 22 ~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 22 RSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 456665 999999999999999987665 99999999974
No 369
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.81 E-value=0.21 Score=50.93 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=30.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH----C--CCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----M--GARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~----~--G~rVllID~D~ 212 (516)
.|+-..|..|+|||+++.+||...+. . +.+|+.||..-
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 45555699999999999999976652 1 36999999975
No 370
>PRK05433 GTP-binding protein LepA; Provisional
Probab=92.79 E-value=0.57 Score=51.69 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..|.+.|+|||+...........+..+|.+++|+.....--......+..+...++++ -+|+|+.+.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpi-IvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEI-IPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 4677899999874332222223355789999998876532222333344444557774 478899764
No 371
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=92.77 E-value=0.8 Score=48.36 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||+.-.........+..+|.+++|+.... .-.......+..+...+.+.+-+++|+.+.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 67889999998742211112222446799999988765 222333445555666676656788899764
No 372
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.76 E-value=0.16 Score=48.53 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+.++ |..|+|||+++..++..+.+.|.++..+++..
T Consensus 44 ~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34454 99999999999999999988899999999865
No 373
>PRK05642 DNA replication initiation factor; Validated
Probab=92.76 E-value=0.15 Score=49.26 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+ .|..|+|||.++..++..+.+.|++|+.++++-
T Consensus 48 l~l-~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 48 IYL-WGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 444 499999999999999999988899999999863
No 374
>PRK04328 hypothetical protein; Provisional
Probab=92.76 E-value=0.21 Score=48.75 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++.|. +-.|+|||+++.++++.-++.|.+++.|+++-.
T Consensus 24 s~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 24 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 455555 889999999999999998888999999999763
No 375
>PF12846 AAA_10: AAA-like domain
Probab=92.75 E-value=0.15 Score=50.63 Aligned_cols=33 Identities=42% Similarity=0.477 Sum_probs=29.7
Q ss_pred EeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.|+.|+||||+..++...+...|.+|+++|..
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 349999999999999999999999999999554
No 376
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=92.71 E-value=2.2 Score=39.27 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+++-|.|++..-....+.......+|.+++|...+. .++..+...++.+.+. ..+ + +|.|+++.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i-lVgnK~Dl 116 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I-LVGTKYDL 116 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E-EEEEchhc
Confidence 4567888987543222222222345678887776544 4666666666666542 233 3 67899765
No 377
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.70 E-value=0.91 Score=40.21 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+++.|+|+|...............+|.+++|..+... ++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 56789999987543222222223467888888888765 45555444443322 2444 4567899764
No 378
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=92.68 E-value=0.3 Score=53.67 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
++.+.|+|+|+.-............+|.+++|+..+..........+..+...+++.+-+|+|+++.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3668999998632222222333456799999988876433445555666777788866789999764
No 379
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.64 E-value=1.2 Score=48.90 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=42.6
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 282 D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+.|+|||+......+.......+|.+++|+..+..........++.+...++++ -+++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPi-IVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI-IVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECccc
Confidence 6899999875433222222344578899998776554455556667777778884 478899764
No 380
>PLN03108 Rab family protein; Provisional
Probab=92.60 E-value=5.3 Score=37.61 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
+.+-|+|++...............+|.+++|...... ++..+...+..+... +.+ +-+|.|+.+..... ..
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~----~~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR----AV 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc----CC
Confidence 3466788865332212222223456788888776543 444444444433322 344 44777997643221 11
Q ss_pred CCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeC--CCCHHHHHHHHHHHHHHHHHH
Q 010156 357 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD--PCGEVANTFQDLGVCVVQQCA 417 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~--p~s~~~~~~~~La~~i~~~~~ 417 (516)
..+..+++.+.++.++ ++.. ......+.|..+++.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~~--------------------~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 130 STEEGEQFAKEHGLIF--------------------MEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CHHHHHHHHHHcCCEE--------------------EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1233445555555422 1111 123456668888888776554
No 381
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.55 E-value=0.2 Score=51.97 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+-+|+|. |-.|+||||++..|...+...|.+|..|..|-.-
T Consensus 212 PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 212 PLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4466766 8899999999999998888778999999887543
No 382
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.51 E-value=1.5 Score=38.62 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 347 (516)
.+.+.++|+|...............+|.+++|...+. .++..+......+.+. +.+ +-+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccc
Confidence 4667899998754322222222445788888876644 3455555555555432 344 45888997643
No 383
>PLN03118 Rab family protein; Provisional
Probab=92.51 E-value=1.5 Score=41.31 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=36.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH-HHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV-RMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~-~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|||+.-....+.......+|.+++|...+.. ++..+...+ ..+.. .+.+ +-+|.|+.+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 46689999987533222222224467888888776543 444444332 22221 1333 4477899664
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=92.49 E-value=0.86 Score=46.12 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=29.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
|.+.+|==|+||||+--++... ..|.|+.+|-.|...
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~ 42 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGE 42 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCC
Confidence 4555688899999999888753 468999999888743
No 385
>PRK06904 replicative DNA helicase; Validated
Probab=92.48 E-value=0.16 Score=54.21 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~ 213 (516)
+.|.++..|+|||+++.|+|...|. .|++|+++.+...
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4555699999999999999999885 5999999988864
No 386
>PRK04040 adenylate kinase; Provisional
Probab=92.47 E-value=0.17 Score=47.18 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=24.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 205 (516)
+++|+|+ |-.|+||||++-.|+..|. .|.++
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 5677777 8999999999999999885 24444
No 387
>PRK07933 thymidylate kinase; Validated
Probab=92.45 E-value=0.28 Score=46.60 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.|+|- |--|+||||.+..|+..|..+|++|.++..-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~ 38 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFPR 38 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56666 77899999999999999999999999987643
No 388
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=92.44 E-value=1.8 Score=38.38 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
+.+.|+|+|+......+.......+|.+++|...+. .++..+...+..+.+ .+.++ -+|.|+++..
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCcccc
Confidence 457789998743322222222345788888766544 344455544444433 24554 4677997643
No 389
>PRK08840 replicative DNA helicase; Provisional
Probab=92.44 E-value=0.18 Score=53.78 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~ 213 (516)
-+.|.++..|+|||+++.|+|...|. .|++|+++.+...
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 34455699999999999999999985 6999999998864
No 390
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.39 E-value=7.5 Score=35.58 Aligned_cols=83 Identities=8% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
+.+.+.|.|+|+......+.......+|.+++|..... .++..+...+..+.. .+. .+-+|.|+.+....
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~-piilv~NK~Dl~~~---- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNA---- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC-CEEEEEECCCCCCC----
Confidence 34668889997632211111112345788888887654 344444444443321 133 35688899764321
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
...+++.+.+|..
T Consensus 134 -----~~~~~~~~~l~l~ 146 (181)
T PLN00223 134 -----MNAAEITDKLGLH 146 (181)
T ss_pred -----CCHHHHHHHhCcc
Confidence 1356777777753
No 391
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=92.39 E-value=2.4 Score=37.28 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
+.+.++|+|+.-............+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|+++..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~ 118 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLE 118 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 457888987642222221112345788888876544 3445555555544432 334 55778997643
No 392
>PRK05748 replicative DNA helicase; Provisional
Probab=92.39 E-value=0.17 Score=53.88 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=33.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
+.+.++..|+|||+++.|+|...|. .|++|+++.+....
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 4455699999999999999999885 69999999988744
No 393
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.37 E-value=2.8 Score=36.81 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=34.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+|+.-....+.......++.+++|...+ ..++..+...+..+.+ .+.++ -+|.|+++.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPM-VLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34567899764322222222233567777765544 3455555555444443 24554 478899764
No 394
>PRK08181 transposase; Validated
Probab=92.34 E-value=0.17 Score=49.90 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+-+.++ |..|+|||.++..+|..+.+.|++|+.+.+
T Consensus 107 ~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 345555 899999999999999999999999999876
No 395
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.32 E-value=0.16 Score=48.71 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
+|+|+ |+.||||+-..||..|..+|+||++-
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46676 55899999999999999999999874
No 396
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.32 E-value=0.12 Score=46.26 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
+|+| ||+.|+||||+|..||..|
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHh
Confidence 4665 5999999999999998877
No 397
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=92.30 E-value=2.2 Score=38.19 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (516)
+.+.|+|+|+..............++.+++|.... ..++..+...++.+.+.. ...+-+|.|+++..
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 45788899753221122222234567777776653 345555666555555432 22356888997653
No 398
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=92.29 E-value=2.7 Score=38.75 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+|+.-....+.......+|.+++|...+ ..++..+...++.+... +.++ -+|.|+++.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilvgNK~Dl 118 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDK 118 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCE-EEEEEChhc
Confidence 45678899764322222222234568888776543 34556666665555432 3454 478899764
No 399
>PRK06547 hypothetical protein; Provisional
Probab=92.27 E-value=0.17 Score=46.47 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+.+|+|. |..|+||||+|..||..+ | +.++++|-.
T Consensus 15 ~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 15 MITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 4567776 899999999999998864 3 345566543
No 400
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.26 E-value=0.28 Score=50.10 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~~ 213 (516)
.|....|..|+|||+++.++|...+. .+.+|+.||+.-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 45555599999999999999976542 2348999999864
No 401
>PRK07261 topology modulation protein; Provisional
Probab=92.25 E-value=0.17 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.|+|+ |.+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46777 899999999999987654
No 402
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=92.25 E-value=2.9 Score=39.04 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCC------CChhh--hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEecc
Q 010156 280 ELDYLVIDMPPG------TGDIQ--LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMC 344 (516)
Q Consensus 280 ~yD~VIID~pp~------~~~~~--~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~~ 344 (516)
.|.+.|+|||+. .+... .....+..+|.+++|...+. .++..+....+.+.+ .+.+ +-+|.|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 467889999762 11110 01122346789988887754 455556655555443 2344 45888997
Q ss_pred cc
Q 010156 345 HF 346 (516)
Q Consensus 345 ~~ 346 (516)
+.
T Consensus 127 Dl 128 (198)
T cd04142 127 DQ 128 (198)
T ss_pred cc
Confidence 65
No 403
>PLN02796 D-glycerate 3-kinase
Probab=92.22 E-value=0.22 Score=50.57 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
-+|+|. |..|+||||++..|+..|...|.++..|-.|-.
T Consensus 101 liIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 101 LVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred EEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 466776 889999999999999999887888888887743
No 404
>PRK06893 DNA replication initiation factor; Validated
Probab=92.22 E-value=0.19 Score=48.27 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=31.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.++ |..|+|||+++..+|..+.+.|.+|..+.++
T Consensus 41 ~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34455 9999999999999999999999999999885
No 405
>PRK06761 hypothetical protein; Provisional
Probab=92.21 E-value=0.18 Score=50.01 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEE-EEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll-ID~D~ 212 (516)
++|.|. |-.|+||||++..|+..|...|.+|-. .+.|+
T Consensus 4 ~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 4 KLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 455555 889999999999999999888888865 45554
No 406
>CHL00189 infB translation initiation factor 2; Provisional
Probab=92.17 E-value=0.59 Score=52.50 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|||+...........+..+|.+++|+..+..........+..+...+++++ +++|+++.
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl 359 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDK 359 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCc
Confidence 5778999998642222222223456799999987765434455566677777788854 78899764
No 407
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=92.14 E-value=4.1 Score=37.37 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
+++.+.++|+|+..............+|.+++|+..... ++......+..+.+ .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----
Confidence 356788999986432222222224467888888876543 34444433333321 2444 5578899764211
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
-..+++.+.++..
T Consensus 134 -----~~~~~i~~~l~l~ 146 (184)
T smart00178 134 -----ASEDELRYALGLT 146 (184)
T ss_pred -----CCHHHHHHHcCCC
Confidence 2356777777753
No 408
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=92.08 E-value=4.4 Score=37.56 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCcccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.+.+-|.|+++.-....+.......+|.+++|... +..++..+...++.+.+. +.+ +-+|.|+.+..... ..
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~----~v 128 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKR----QV 128 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhcc----CC
Confidence 35677889975432222221223467888887665 456777887777777643 343 55788997653211 11
Q ss_pred CCchHHHHHHHhCC
Q 010156 357 GRGSGSQVVQQFGI 370 (516)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (516)
..+..+.+++..+.
T Consensus 129 ~~~~~~~~a~~~~~ 142 (189)
T cd04121 129 ATEQAQAYAERNGM 142 (189)
T ss_pred CHHHHHHHHHHcCC
Confidence 22345556655554
No 409
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.08 E-value=2 Score=38.86 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=36.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+.+.++|+|+.-............+|.+++|+..+.. ++......+..+.+ .+.+ +-+|.|+++.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECccc
Confidence 45678999976422111211223467888888776654 44444444433321 3445 4478899764
No 410
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=92.07 E-value=8.7 Score=34.58 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=41.8
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCc
Q 010156 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRG 359 (516)
Q Consensus 282 D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (516)
.+++.|++..-....+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++....... ...
T Consensus 55 ~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~----~~~ 129 (169)
T cd01892 55 YLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR----YEV 129 (169)
T ss_pred EEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccc----ccc
Confidence 45566765432211111111346788888877644 4455554555544322 445 5578899775321110 112
Q ss_pred hHHHHHHHhCC
Q 010156 360 SGSQVVQQFGI 370 (516)
Q Consensus 360 ~~~~~~~~~g~ 370 (516)
..+++.+.++.
T Consensus 130 ~~~~~~~~~~~ 140 (169)
T cd01892 130 QPDEFCRKLGL 140 (169)
T ss_pred CHHHHHHHcCC
Confidence 34566666664
No 411
>PRK06321 replicative DNA helicase; Provisional
Probab=92.06 E-value=0.21 Score=53.36 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=33.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
+.|.++..|+|||+++.|+|..+|. .|++|+++.+....
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4455699999999999999999984 69999999888643
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.03 E-value=2.6 Score=39.43 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~ 210 (516)
.|.|+ |..|+||||+...|+..+... +.+++.++-
T Consensus 3 lilI~-GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVT-GPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 34554 999999999999988888754 456665543
No 413
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.95 E-value=0.16 Score=48.23 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=25.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHH--------HHCCCcEEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 209 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~L--------a~~G~rVllID 209 (516)
++++.|-.|+||||+.+.++..+ ...+.+||++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67778999999999999999988 34567777764
No 414
>PRK08116 hypothetical protein; Validated
Probab=91.93 E-value=0.24 Score=48.84 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.+ .|..|+|||.++..+|..|.++|++|+.+++.
T Consensus 117 l~l-~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLL-WGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 444 48899999999999999999889999999853
No 415
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=91.92 E-value=0.3 Score=49.06 Aligned_cols=44 Identities=30% Similarity=0.183 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
++.+.+. |---+||||++.-|-.+..+.|+|.+.+|+|++.++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 3456666 4457899999999999999999999999999998764
No 416
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.90 E-value=0.26 Score=46.23 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=27.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.+..|..|+||||+...++..+...|++|+++-.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34445889999999999999999999999998843
No 417
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=91.85 E-value=0.64 Score=41.82 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=54.2
Q ss_pred CCCCEEEEcCCCCCCh------hhh--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 010156 279 GELDYLVIDMPPGTGD------IQL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~------~~~--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (516)
.+..+.+||+|+-.+. ... ........|.+++|+.++.. ..-..+...+.+.+.|++ +++||++.-.+.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVV-VVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEE-EEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEE-EEEeCHHHHHHc
Confidence 4578999999974321 111 11112357889999988764 444456777778899855 777997644322
Q ss_pred ccccccCCchHHHHHHHhCCCeEEecCC
Q 010156 351 KRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (516)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (516)
... -..+.+.+.+|.|++...-.
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~sa~ 144 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVSAR 144 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEBTT
T ss_pred CCE-----ECHHHHHHHhCCCEEEEEeC
Confidence 111 24788899999987766443
No 418
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=91.80 E-value=0.32 Score=44.77 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=70.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCCc
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 256 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~ 256 (516)
.+.+|==|+||||+-.+|.. ....|.|+++|-.|...-.. +..+.. ..|+.+..... +
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~i------D~~~l~------------~~~~~v~~l~~---g 60 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNI------DAELLQ------------EDGVPVVELNN---G 60 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHH------HHHHHH------------TTT-EEEEECT---T
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccccc------chhhhc------------ccceEEEEecC---C
Confidence 44557789999999999998 66789999999888754211 111110 11222222110 0
Q ss_pred ccc-cCCccHHHHHHHHHHhcccC--CCCEEEEcCCCCCChhhh-----hhhhhcCCCeEEEEeCCCcch-HHHH-HHHH
Q 010156 257 RAI-MRGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQL-----TLCQVVPLTAAVIVTTPQKLA-FIDV-AKGV 326 (516)
Q Consensus 257 ~~~-~~~~~~~~~l~~l~~~~~~~--~yD~VIID~pp~~~~~~~-----~~~~~~~~d~viiV~~p~~~s-~~~~-~~~~ 326 (516)
... .....+...+.++. .+. .+|+|||-+.+......+ ........+.++.|+.+.... .... .-+.
T Consensus 61 cicc~~~~~~~~~l~~l~---~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~ 137 (178)
T PF02492_consen 61 CICCTLRDDLVEALRRLL---REYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR 137 (178)
T ss_dssp TESS-TTS-HHHHHHHHC---CCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH
T ss_pred CcccccHHHHHHHHHHHH---HhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh
Confidence 000 01123334455554 224 689999999773332222 011123457788888875531 1111 1223
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 010156 327 RMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++...+ -+|+|+++.
T Consensus 138 ~Qi~~AD----vIvlnK~D~ 153 (178)
T PF02492_consen 138 EQIAFAD----VIVLNKIDL 153 (178)
T ss_dssp HHHCT-S----EEEEE-GGG
T ss_pred hcchhcC----EEEEecccc
Confidence 3333333 478899653
No 419
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.76 E-value=0.14 Score=44.82 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 177 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.|..|+||||++-.|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 34559999999999888876654 67788886
No 420
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.74 E-value=4.8 Score=36.43 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=37.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~ 346 (516)
+...+.++|+|+..............+|.+++|+..+.. ++......+..+ +.. +.+ +-++.|+++.
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCC
Confidence 345689999987432211212224467888888876543 344444433333 221 344 5678899763
No 421
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.72 E-value=3.1 Score=37.15 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (516)
+.+-|.|+++..............+|.+++|... +..++..+...++.+.+.. -..+-+|.|+.+.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4567889876332222222223456888887664 4457777777666655432 1235678899664
No 422
>PRK09165 replicative DNA helicase; Provisional
Probab=91.69 E-value=0.23 Score=53.51 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=32.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHC---------------CCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~---------------G~rVllID~D~~~ 214 (516)
+.+.++..|+||||++.|+|...|+. |++|+++.+....
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 45556999999999999999999863 7899999887644
No 423
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=91.69 E-value=4.1 Score=41.70 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
|.+.+|==|+||||+--++... ..|.|+.+|-.|...-
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~ 43 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDL 43 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccc
Confidence 4556688899999998888753 4689999999887543
No 424
>PTZ00301 uridine kinase; Provisional
Probab=91.67 E-value=0.34 Score=45.98 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-CC-CcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G-~rVllID~D~~~ 214 (516)
.+|+|+ |-.|+||||+|..|+..|.. .| ..|.++-.|-+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 477877 88999999999999988854 34 346677777654
No 425
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=91.65 E-value=1.5 Score=49.63 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=39.6
Q ss_pred CCCCEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~---~-----~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.++.+.++|||+-... . ......+..+|.+++|+.....-...-....+.++..+.+++ +|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 4567889999873211 0 011112346789999988754222222345667777777755 66799764
No 426
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.62 E-value=0.34 Score=47.25 Aligned_cols=41 Identities=27% Similarity=0.264 Sum_probs=34.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCc--EEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r--VllID~D~~~ 214 (516)
+-||+++ |-.||||||+|..|+..|++.+.+ |-+|=+|-..
T Consensus 82 pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 82 PFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 3478887 889999999999999999998755 8888888543
No 427
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.61 E-value=0.17 Score=47.04 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=26.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+|+|. |..|+||||+|..|+..+. .+.+|..|-.
T Consensus 1 ii~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 35665 8899999999999998862 4667777743
No 428
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=91.61 E-value=3.2 Score=36.71 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
.+++.|+|+|+..............+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|+.+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~ 118 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDK 118 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcc
Confidence 4678999998743222222222345788888877654 3455555555544432 344 4577798654
No 429
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.55 Score=41.01 Aligned_cols=59 Identities=14% Similarity=0.337 Sum_probs=45.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEe--c---CC--CeEEEEEEeCCCCCCcHHHH
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN--E---AL--GEVSFRLELTTPACPIKDMF 131 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~--~---~~--~~v~v~l~lt~~~cp~~~~l 131 (516)
.....+.+.+-++.|.|||=+...-+|+.|+.-.|+ + .. .-|.|.+++|.|.|.++..+
T Consensus 32 ~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlI 97 (161)
T KOG3381|consen 32 DSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLI 97 (161)
T ss_pred cchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEEEEEeccCCCcchHHhhh
Confidence 556788899999999999999888888877765443 1 11 26889999999999977543
No 430
>PRK06921 hypothetical protein; Provisional
Probab=91.58 E-value=0.26 Score=48.58 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=31.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~ 210 (516)
..-+.++ |..|+|||+++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 889999999999999999988 999998885
No 431
>PRK13947 shikimate kinase; Provisional
Probab=91.57 E-value=0.27 Score=44.65 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.|.+. |-.|+||||++..||..| |.+ ++|.|.
T Consensus 3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 46665 889999999999999887 555 477775
No 432
>PRK06851 hypothetical protein; Provisional
Probab=91.54 E-value=0.4 Score=49.26 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=35.0
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+..+++.+. |..|+||||+...++..+.++|++|.+.=|-.
T Consensus 211 ~~~~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 211 EGVKNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred cccceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4445666655 99999999999999999999999999987643
No 433
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=91.52 E-value=1.7 Score=45.76 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=39.9
Q ss_pred CCCEEEEcCCCCCChh-------h----hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDI-------Q----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~-------~----~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+..+.|+|||+-.... . .+...+..+|.+++|+.....-...-.+.++.+.+.+.++ -+|+|+++.
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl 295 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKAL-VIVVNKWDL 295 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEECccc
Confidence 3468999998631110 0 0112245679999998876543333445666666667764 478899764
No 434
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.52 E-value=0.25 Score=55.02 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=36.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
.+++|.++ |..|+||||+|..|+..|...|..+.++|.|.-..
T Consensus 459 ~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 459 KPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 45666665 99999999999999999988899999999997654
No 435
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.48 E-value=0.23 Score=45.15 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=27.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
||+.|.++ |-.|+||||++..||..| |.. ++|.|..
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~~--~~d~D~~ 36 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GYR--FVDTDQW 36 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEccHH
Confidence 34567776 889999999999999887 543 5688753
No 436
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.47 E-value=0.25 Score=46.45 Aligned_cols=34 Identities=41% Similarity=0.468 Sum_probs=26.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++|+++ |+-|+||||+|-- |+..|.+ +||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~~----~~~~G~~--vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKI----LAELGFP--VIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHH----HHHcCCe--EEEccH
Confidence 57899999 9999999998754 4455665 567775
No 437
>PRK05636 replicative DNA helicase; Provisional
Probab=91.45 E-value=0.26 Score=53.04 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~~ 214 (516)
-+.+.++..|+|||+++.|+|...| +.|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 3445569999999999999999988 468999999887643
No 438
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.42 E-value=3.6 Score=36.67 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~ 346 (516)
+.+.++|+|+...........+..+|.+++|..... .+...+...+..+.. .++++ -+|.|+.+.
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~-i~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVIT-ILVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECccc
Confidence 456788997632222221222445778888877654 244444444444433 24544 477899764
No 439
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.40 E-value=0.25 Score=46.71 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
.+|+|+ |-+|+||||+|..|...|... +|.+|-.|-+..
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 477877 778999999999999988654 899999987654
No 440
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.35 E-value=0.28 Score=47.41 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+.++ |..|+|||+++..+|..+.+.|++|..+.++.
T Consensus 47 ~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34454 99999999999999999998999999999975
No 441
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=91.31 E-value=1.3 Score=39.97 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+......+.......+|.++++...+. .++..+. ..+..+.+. +.+ +-+|.|+++.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhh
Confidence 34678899998743222222222345788888876643 4555553 244444432 455 4578899764
No 442
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.26 E-value=0.22 Score=42.79 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=30.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHC-----CCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~-----G~rVllID~D~~~ 214 (516)
+.+..|..|+|||+++.+++..+... ..+|+.+++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 44555999999999999999999864 6788888887654
No 443
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.21 E-value=0.45 Score=48.12 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=29.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH---CC---CcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~---~G---~rVllID~D~~ 213 (516)
.++.+ .|..|+||||++.+++...+. .| .+|+.||....
T Consensus 97 ~i~~i-~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 97 SITEI-FGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred eEEEE-ECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 34444 489999999999999974332 33 58999998754
No 444
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.04 E-value=2.3 Score=37.98 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=33.5
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC------CCCEEEEEEeccccc
Q 010156 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL------KVPCIAVVENMCHFD 347 (516)
Q Consensus 282 D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l-~~~------~~~~~gvV~N~~~~~ 347 (516)
-+.++|+|+......+....+..+|.++++..... .++.......+.+ ... +.++ -+|.|+++..
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECcccc
Confidence 35688997642222222222345788888876543 3444444333322 211 4554 4778997653
No 445
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=91.04 E-value=1.5 Score=48.35 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 359 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (516)
.|.+.|+|||+...........+..+|.+++|+.............+..+.+.+++ +-+|+|+++..... ...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~------~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD------PER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC------HHH
Confidence 47789999987543222222335578999999887653222222333333345676 45778997643211 012
Q ss_pred hHHHHHHHhCC
Q 010156 360 SGSQVVQQFGI 370 (516)
Q Consensus 360 ~~~~~~~~~g~ 370 (516)
..+++.+.++.
T Consensus 142 ~~~el~~~lg~ 152 (595)
T TIGR01393 142 VKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHhCC
Confidence 34566666664
No 446
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.03 E-value=0.35 Score=41.36 Aligned_cols=31 Identities=32% Similarity=0.257 Sum_probs=25.1
Q ss_pred EeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
..|..|+||||++..+|..+ |..++-+|+..
T Consensus 3 l~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred EECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 34899999999999999987 56777776654
No 447
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.01 E-value=3.4 Score=37.10 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLA 195 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA 195 (516)
..|+++ |..|+||||+...+.
T Consensus 15 ~~v~i~-G~~g~GKStLl~~l~ 35 (173)
T cd04155 15 PRILIL-GLDNAGKTTILKQLA 35 (173)
T ss_pred cEEEEE-ccCCCCHHHHHHHHh
Confidence 357777 899999999977663
No 448
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=90.99 E-value=1.9 Score=42.49 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=24.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~ 212 (516)
+++..|-=|+||||+--. .|- +.|+|+.+|--..
T Consensus 59 vtIITGyLGaGKtTLLn~---Il~~~hgKRIAVIlNEf 93 (391)
T KOG2743|consen 59 VTIITGYLGAGKTTLLNY---ILTGQHGKRIAVILNEF 93 (391)
T ss_pred eEEEEecccCChHHHHHH---HHccCCCceEEEEhhhc
Confidence 455567789999998544 343 5799999996554
No 449
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=90.92 E-value=4.1 Score=41.47 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 010156 281 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (516)
Q Consensus 281 yD~VIID~pp~~~~-------~~~~~~~~~~~d~viiV~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 344 (516)
+.++|+|+|.-... .......+..++.+++|+..+.. .+.......+.+... +.++ -+|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~-IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPR-IVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCE-EEEEeCc
Confidence 56899999864211 11111223357888888877653 445555555544432 3444 4888997
Q ss_pred cc
Q 010156 345 HF 346 (516)
Q Consensus 345 ~~ 346 (516)
+.
T Consensus 284 DL 285 (329)
T TIGR02729 284 DL 285 (329)
T ss_pred cC
Confidence 64
No 450
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=90.91 E-value=2.7 Score=37.75 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc--CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 346 (516)
..+.+.++|+|+......+.......+|.+++|+..+.. ++..+...+..+.. .+.++ -+|.|+.+.
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pi-ilv~NK~Dl 111 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPL-VVLANKQDL 111 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcE-EEEEeCcCC
Confidence 456688999976433222222234567888888876553 44455444444432 34554 488899764
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.89 E-value=0.27 Score=44.60 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 206 (516)
.|+|+ |-+||||||++-.|+ +.|+++.
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH----HhCCcee
Confidence 57777 889999999998877 4466654
No 452
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.88 E-value=0.27 Score=46.11 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+.+|.+|+||||+|..||..+ |..+ ++..|.
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 44555999999999999998875 5544 666664
No 453
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=90.86 E-value=13 Score=39.09 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=37.8
Q ss_pred CCCEEEEcCCCCCC-------hhhhhhhhhcCCCeEEEEeCCCc----chHHHHHHHHHHHHcC-----CCCEEEEEEec
Q 010156 280 ELDYLVIDMPPGTG-------DIQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKL-----KVPCIAVVENM 343 (516)
Q Consensus 280 ~yD~VIID~pp~~~-------~~~~~~~~~~~~d~viiV~~p~~----~s~~~~~~~~~~l~~~-----~~~~~gvV~N~ 343 (516)
.+.++|+|+|.-.. .....+..+..++.+++|+..+. ..+.+...+.+.+... +.+ .-+|+|+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK 283 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANK 283 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeC
Confidence 45689999976321 11111222334788888887743 3445555555555542 344 4488999
Q ss_pred ccc
Q 010156 344 CHF 346 (516)
Q Consensus 344 ~~~ 346 (516)
++.
T Consensus 284 ~DL 286 (424)
T PRK12297 284 MDL 286 (424)
T ss_pred CCC
Confidence 774
No 454
>PRK07004 replicative DNA helicase; Provisional
Probab=90.85 E-value=0.3 Score=52.12 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=33.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
+.|.++..|+|||+++.|+|..+|. .|++|+++-+....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 4455699999999999999999884 69999999888754
No 455
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.84 E-value=0.43 Score=44.57 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
++.|+|. |--|+||||++-.|+..|...|+.|...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 3577777 8899999999999999999888776654
No 456
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=90.82 E-value=0.29 Score=45.77 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
||++|+++ |.-|+||||++..|+. .|. -+||+|.-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 46788888 8899999999987775 365 46888863
No 457
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.82 E-value=0.23 Score=44.03 Aligned_cols=32 Identities=41% Similarity=0.417 Sum_probs=24.7
Q ss_pred EEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+..|..|+||||+|..|+..+ | ..++|.|.-.
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 455999999999999998874 3 3567887654
No 458
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.80 E-value=0.49 Score=49.04 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+.+|.|+ |..|+||||++..|...|..+ ++|.+|.-+..
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 3588888 778899999999999999999 99999976543
No 459
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=90.76 E-value=0.3 Score=50.21 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=31.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH--HHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L--a~~G~rVllID~D~ 212 (516)
.+.|+.|-.|+|||.++.+||..| ...+.+++++-.+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 456667999999999999999999 67777777765553
No 460
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.75 E-value=8.1 Score=35.02 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=46.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-cC--CCCEEEEEEecccccCCCcccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL--KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~-~~--~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
..+.+.|.|+|+..........-...+|.+++|...+. .++..+...+..+. .. .-..+-+|.|+++....
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 129 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA----- 129 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-----
Confidence 34568999998643322222222346788888888654 34555555554442 21 11246689999764221
Q ss_pred ccCCchHHHHHHHhCC
Q 010156 355 PFGRGSGSQVVQQFGI 370 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (516)
...+++.+.++.
T Consensus 130 ----~~~~~i~~~~~~ 141 (175)
T smart00177 130 ----MKAAEITEKLGL 141 (175)
T ss_pred ----CCHHHHHHHhCc
Confidence 124566666664
No 461
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.73 E-value=0.35 Score=52.95 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~ 213 (516)
+.+|.++ |-.|+||||++..||..|.. .|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3466665 99999999999999999987 7888999999964
No 462
>PTZ00369 Ras-like protein; Provisional
Probab=90.68 E-value=7.4 Score=35.76 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
+.+-|+|||+.-....+.......++.+++|...+. .++..+....+.+.+. +.+ +-+|.|+++.
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl 122 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDL 122 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 456688997643322222122335677877766543 4555666555555432 344 4578899764
No 463
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=90.66 E-value=0.6 Score=46.72 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=50.6
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 282 D~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.|-=+|||......--.......+|++|+|+....-.+...+.-+=+.++.|++.+.+.+|+++..
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV 183 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc
Confidence 355679988654433333445567999999998888888888888888999999999999997754
No 464
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=90.50 E-value=3.7 Score=36.34 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH-HHHHc---CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV-RMFSK---LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~-~~l~~---~~~~~~gvV~N~~~~ 346 (516)
...+.|+|+|+...........+..+|.+++|+..+.. ++....+.+ ..++. .+.+ +-+|.|+++.
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 112 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDM 112 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCC
Confidence 45688999987433222222224567888888887654 233333333 23332 2445 4578899764
No 465
>PRK13946 shikimate kinase; Provisional
Probab=90.43 E-value=0.32 Score=44.98 Aligned_cols=33 Identities=42% Similarity=0.476 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.|.++ |-.|+||||++..||..| |.+ .+|.|.
T Consensus 11 ~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 456666 889999999999999888 555 677774
No 466
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.38 E-value=0.35 Score=48.74 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~~ 213 (516)
.++-| .|..|+||||++.++|...+. .+.+|+.||+.-.
T Consensus 96 ~i~ei-~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 96 AITEV-FGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 34444 599999999999999988763 2349999999853
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.33 E-value=0.27 Score=41.93 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=18.3
Q ss_pred EeCCCCChHHHHHHHHHHHH
Q 010156 179 SSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~L 198 (516)
.+|..|+||||++-.|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45999999999999999998
No 468
>PRK03003 GTP-binding protein Der; Reviewed
Probab=90.29 E-value=2.3 Score=45.66 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=28.0
Q ss_pred hcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 302 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 302 ~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+..+|.+++|+..+.. +..+. +.+..+...+.++ -+|+|+++.
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~pi-IiV~NK~Dl 334 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRAL-VLAFNKWDL 334 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCE-EEEEECccc
Confidence 3467888988887654 33333 4566666667664 578899764
No 469
>PLN02348 phosphoribulokinase
Probab=90.28 E-value=0.53 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=32.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCC---------------CcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G---------------~rVllID~D~~~ 214 (516)
..+|+|+ |-.|+||||+|..|+..|...+ ..|.+|-+|-+.
T Consensus 49 p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 49 TVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 4577877 8899999999999999997542 467888888654
No 470
>PRK05380 pyrG CTP synthetase; Validated
Probab=90.27 E-value=0.96 Score=48.51 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=38.8
Q ss_pred cceEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 010156 172 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (516)
Q Consensus 172 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~ 218 (516)
|+|-|.|++| -.|.||=.+|+.|+..|..+|++|.++-+||+-+--+
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 48 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDP 48 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCC
Confidence 3566666644 5678999999999999999999999999999865433
No 471
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=90.20 E-value=0.37 Score=46.72 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
|.+|+++ |.=|+||||++.-|+.. .|.+| ||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~v--iDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIEV--IDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EehHHH
Confidence 4688988 88899999998766543 37654 899964
No 472
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=90.19 E-value=5.1 Score=40.60 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=73.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (516)
+.|.+|==|+||||+--+|..... |+|+.+|=-+..--+... . .........+.=++.|
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~-----~----------~~l~~~~e~~~El~nG---- 61 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDG-----G----------ALLSDTGEEVVELTNG---- 61 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccC-----C----------CccccCCccEEEeCCc----
Confidence 344556668999999888766655 899999977764322221 0 0001111111112211
Q ss_pred ccccc-CCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh--h------hhhhcCCCeEEEEeCCCcchHHH---HH
Q 010156 256 GRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--T------LCQVVPLTAAVIVTTPQKLAFID---VA 323 (516)
Q Consensus 256 ~~~~~-~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~--~------~~~~~~~d~viiV~~p~~~s~~~---~~ 323 (516)
...- -.......+.++.. .+ +.+|+|||-+.+-..+... + +......|.++-|+.+....-.. ..
T Consensus 62 -CICCT~r~dl~~~~~~L~~-~~-~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~ 138 (323)
T COG0523 62 -CICCTVRDDLLPALERLLR-RR-DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE 138 (323)
T ss_pred -eEEEeccchhHHHHHHHHh-cc-CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH
Confidence 0000 01233455666666 33 6799999999763332111 1 11223456677777765543211 12
Q ss_pred HHHHHHHcCCCCEEEEEEeccccc
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+.+.+.-.+ -+|+|+++.-
T Consensus 139 ~~~~Qia~AD----~ivlNK~Dlv 158 (323)
T COG0523 139 LAEDQLAFAD----VIVLNKTDLV 158 (323)
T ss_pred HHHHHHHhCc----EEEEecccCC
Confidence 2233333333 4788997643
No 473
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.18 E-value=0.3 Score=48.30 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=30.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHC-CC-cEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GA-RVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~-rVllID~D~~~ 214 (516)
..++|+++ |-||+||||+|..++...... .+ .|.-+++....
T Consensus 18 ~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 18 EVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred CeEEEEEE-cCCcCCcceeeeeccccccccccccccccccccccc
Confidence 34677877 899999999999999885533 23 46667776543
No 474
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=90.11 E-value=3.4 Score=36.83 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCCC-hhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~-~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+|+... ........+..+|.++++...+. .++..+......+... +.+ +-+|.|+.+.
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 4567899987431 11111222345788888877654 4566666555555542 455 4567798664
No 475
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.09 E-value=0.29 Score=49.00 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+++|. ..|..|+||||+|..|+..+. ....+|.|..
T Consensus 2 ~~lii-l~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIIL-TVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred cEEEE-EEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 34444 469999999999999988762 4577787764
No 476
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.07 E-value=5.6 Score=35.62 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=34.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
+.+-|+|+|+......+.......++.+++|... +..++.......+.+.+ .+.+++ ++.|+.+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 4567889876332111211223345666666543 44456555554444432 356655 67898653
No 477
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.94 E-value=0.61 Score=43.98 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++|+|+ |--|+||||+..+++..+.. +.+|.++..|+.
T Consensus 22 ~~~i~~~-G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~ 60 (207)
T TIGR00073 22 LVVLNFM-SSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVI 60 (207)
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence 4678887 78899999999999988753 579999998874
No 478
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.87 E-value=0.48 Score=43.25 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=24.5
Q ss_pred EeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
..|+.|+||||+...+...|...|.+|.-+
T Consensus 4 iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 459999999999999999998877776544
No 479
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=89.77 E-value=3 Score=38.76 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
+.+.|+|+|+......+.......+|.+++|..... .++..+......+.+ .+.+ +-+|.|+.+.
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccc
Confidence 457889998643322222222446788888887654 355555555444433 2455 4578899664
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.68 E-value=0.48 Score=44.37 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
++|+++ |.-|+||||++..|+..+ |..| +|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 468887 889999999998877543 6655 588863
No 481
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.60 E-value=0.45 Score=43.41 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=28.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+.+.|. |..|+|||++...+...+...+.-++.++++..
T Consensus 25 ~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 455555 999999999999999999887544888888876
No 482
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.57 E-value=0.56 Score=46.32 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++++=|+ |-.|+||||+|.+++....+.|.+|+.||+--
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4566777 88999999999999999999999999999874
No 483
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.57 E-value=0.58 Score=46.66 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|. .+|-.|+||||+|..||..| |..+ +|-.|.-.
T Consensus 92 p~iIl-I~G~sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 92 PIIIL-IGGASGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CEEEE-EECCCCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 34555 55999999999999999888 5553 56677543
No 484
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=89.56 E-value=0.37 Score=45.19 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~ 215 (516)
+++.++.|-.|+||||++..+...+. +...+.||.|....
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 46677779999999999998877666 66788999997653
No 485
>PLN02422 dephospho-CoA kinase
Probab=89.55 E-value=0.46 Score=45.68 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
|++|+++ |.-|+||||++..|+ +.|.. ++|+|--
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~--~idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIP--VVDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCe--EEehhHH
Confidence 4578887 889999999998887 35765 5899864
No 486
>PRK13973 thymidylate kinase; Provisional
Probab=89.50 E-value=0.65 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+.|+|- |--|+||||.+-.|+..|...|++|....
T Consensus 4 ~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577776 88899999999999999999999997653
No 487
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=89.45 E-value=4.9 Score=35.97 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+++.|+|+|+...........+..+|.+++|...+ ..++..+. ..++.++.. +.+ +-+|.|+++..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 4577899999864322111122234578887776654 34555543 233444432 444 45777997653
No 488
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=89.38 E-value=0.54 Score=44.21 Aligned_cols=33 Identities=39% Similarity=0.307 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|+++ |.-|+||||++..|+. .|.. +||+|-
T Consensus 1 m~~igit-G~igsGKst~~~~l~~----~g~~--vid~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS----EGFL--IVDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----CCCe--EEeCcH
Confidence 4578888 8889999999988873 5764 688884
No 489
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.18 E-value=0.48 Score=47.93 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~~ 213 (516)
.|....|..|+|||+++.++|...+.. +.+|+.||++-.
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 344445999999999999999887642 359999999853
No 490
>PRK13695 putative NTPase; Provisional
Probab=89.06 E-value=0.73 Score=42.08 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 206 (516)
.|+++ +.+|+||||+...++..+...|.++.
T Consensus 2 ~i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 35666 88999999999999998887888765
No 491
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=89.06 E-value=0.51 Score=49.55 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.+.|||||+.-.........+..+|.+++|+....--.....+.+..+...+.+.+-+++|+.+.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 56789999998732211122334557899999988765433444555666666677666689999764
No 492
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=88.96 E-value=5.3 Score=35.19 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=35.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+..............+|.+++|...... ++..+...+..+ +. .+.+ +-+|.|+++.
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence 45688999976432211111223457888888776443 344444433333 21 2444 5688899764
No 493
>PRK03839 putative kinase; Provisional
Probab=88.93 E-value=0.47 Score=43.53 Aligned_cols=31 Identities=42% Similarity=0.535 Sum_probs=23.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|.++ |-.|+||||++..||..+ |.. .+|+|
T Consensus 2 ~I~l~-G~pGsGKsT~~~~La~~~---~~~--~id~d 32 (180)
T PRK03839 2 IIAIT-GTPGVGKTTVSKLLAEKL---GYE--YVDLT 32 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 35555 889999999999888877 443 46666
No 494
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=88.89 E-value=9.7 Score=34.66 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.++.+.+.|.++........-.-...+++++.|+..... .+..+...+..+-. .+.| +-++.|+.+....
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~---- 130 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDA---- 130 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS----
T ss_pred CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCc----
Confidence 467788999976533211211223457889999987754 34555544444322 2455 4588898653221
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
...+++.+.++..
T Consensus 131 -----~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 131 -----MSEEEIKEYLGLE 143 (175)
T ss_dssp -----STHHHHHHHTTGG
T ss_pred -----chhhHHHhhhhhh
Confidence 2456777777643
No 495
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=88.76 E-value=0.31 Score=50.55 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.5
Q ss_pred ccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcE
Q 010156 165 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (516)
Q Consensus 165 ~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 205 (516)
+.+++...++=|.++ |-+|.||||.|..||-.++.+|+=|
T Consensus 255 l~eRL~eraeGILIA-G~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 255 LKERLEERAEGILIA-GAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred HHHHHHhhhcceEEe-cCCCCChhHHHHHHHHHHHhcCcEE
Confidence 344555556678887 8899999999999999999999833
No 496
>PRK13949 shikimate kinase; Provisional
Probab=88.67 E-value=0.41 Score=43.67 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=25.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|+.|.++ |-.|+||||++..||..| |. -.+|+|.
T Consensus 1 m~~I~li-G~~GsGKstl~~~La~~l---~~--~~id~D~ 34 (169)
T PRK13949 1 MARIFLV-GYMGAGKTTLGKALAREL---GL--SFIDLDF 34 (169)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--CeecccH
Confidence 3457777 789999999999999888 33 3667764
No 497
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.56 E-value=0.68 Score=50.16 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
..++.| .+-.|+|||+++.+++...++.|.+|+.|+++-.
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 345666 4899999999999999999999999999998753
No 498
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=88.53 E-value=8.6 Score=34.32 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=42.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEecccccCCCc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADGK 351 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~~~~~ 351 (516)
.+.+.|+|+|+.-....+.......+|.++++...+ ..++..+......+.. .+++ +-+|.|+.+...+
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-- 129 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPER-- 129 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccc--
Confidence 456788999763221112222234567777776544 3456655555443332 1344 4578899764321
Q ss_pred cccccCCchHHHHHHHhC
Q 010156 352 RYYPFGRGSGSQVVQQFG 369 (516)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g 369 (516)
.......+++.+.++
T Consensus 130 ---~~~~~~~~~~~~~~~ 144 (170)
T cd04116 130 ---QVSTEEAQAWCRENG 144 (170)
T ss_pred ---ccCHHHHHHHHHHCC
Confidence 111234555555555
No 499
>PRK01184 hypothetical protein; Provisional
Probab=88.52 E-value=0.56 Score=43.16 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
|++|.++ |..|+||||++. + +.+.|..+ +|+
T Consensus 1 ~~~i~l~-G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 1 MKIIGVV-GMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred CcEEEEE-CCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 4567666 999999999864 3 44567665 454
No 500
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=88.49 E-value=1.1 Score=45.24 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
.+-+|||.|||..-....-.+....-||.+|+++..-.--+...+|-.-....+|++.+-+-+|+.+...-.+..|..-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence 44579999998742211111222335788899988877667777776666667899988888899664321111111111
Q ss_pred chHHHHHHHhCCCeEEecCCCh
Q 010156 359 GSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 359 ~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
.....+++++|......||.+.
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSA 185 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHcCCCcceEEechh
Confidence 2234455667887778899875
Done!