Query 010156
Match_columns 516
No_of_seqs 615 out of 3479
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwy_A Light-independent proto 100.0 4.1E-32 1.4E-36 271.9 20.7 232 171-416 46-294 (314)
2 1g3q_A MIND ATPase, cell divis 100.0 4.7E-32 1.6E-36 261.2 17.9 229 172-415 1-236 (237)
3 3ea0_A ATPase, para family; al 100.0 1.8E-32 6E-37 265.4 13.4 228 171-414 2-244 (245)
4 3q9l_A Septum site-determining 100.0 1E-31 3.5E-36 262.4 14.6 230 172-414 1-248 (260)
5 2ph1_A Nucleotide-binding prot 100.0 1.1E-30 3.8E-35 256.0 20.6 227 166-394 11-244 (262)
6 1hyq_A MIND, cell division inh 100.0 3E-31 1E-35 259.8 13.9 228 172-415 1-235 (263)
7 1wcv_1 SOJ, segregation protei 100.0 3.5E-31 1.2E-35 258.8 11.5 231 171-418 4-248 (257)
8 4dzz_A Plasmid partitioning pr 100.0 3E-30 1E-34 242.9 16.1 199 173-416 1-205 (206)
9 3k9g_A PF-32 protein; ssgcid, 100.0 5.8E-30 2E-34 251.4 17.0 230 170-416 24-267 (267)
10 3end_A Light-independent proto 100.0 1.3E-29 4.4E-34 254.1 19.1 230 170-416 38-287 (307)
11 1cp2_A CP2, nitrogenase iron p 100.0 3.1E-30 1.1E-34 253.5 13.5 232 173-416 1-248 (269)
12 2afh_E Nitrogenase iron protei 100.0 5.4E-30 1.8E-34 254.7 14.0 230 173-415 2-250 (289)
13 3kjh_A CO dehydrogenase/acetyl 100.0 1.6E-29 5.6E-34 245.1 15.7 224 175-416 2-253 (254)
14 2oze_A ORF delta'; para, walke 100.0 5.5E-29 1.9E-33 248.4 13.2 238 172-420 33-294 (298)
15 3ez9_A Para; DNA binding, wing 100.0 2.7E-29 9.3E-34 261.3 10.9 242 170-420 108-399 (403)
16 3ez2_A Plasmid partition prote 100.0 1.2E-29 4.1E-34 263.6 7.9 242 170-420 105-396 (398)
17 3pg5_A Uncharacterized protein 100.0 1.7E-28 5.7E-33 251.4 15.7 244 173-418 1-351 (361)
18 3cwq_A Para family chromosome 99.9 4.9E-28 1.7E-32 229.0 10.0 198 174-420 1-203 (209)
19 2xj4_A MIPZ; replication, cell 99.9 3.6E-28 1.2E-32 241.2 2.5 223 172-413 3-265 (286)
20 3luu_A Uncharacterized protein 99.9 6.6E-26 2.3E-30 187.7 8.1 91 423-516 8-99 (101)
21 3la6_A Tyrosine-protein kinase 99.9 7.5E-25 2.6E-29 216.7 16.1 172 171-348 90-268 (286)
22 3bfv_A CAPA1, CAPB2, membrane 99.9 2.2E-24 7.4E-29 212.0 13.5 171 171-347 80-257 (271)
23 3cio_A ETK, tyrosine-protein k 99.9 7.4E-24 2.5E-28 211.1 14.0 172 171-348 102-280 (299)
24 3ug7_A Arsenical pump-driving 99.9 2E-23 6.9E-28 212.5 13.8 200 171-380 23-316 (349)
25 3fkq_A NTRC-like two-domain pr 99.9 5.8E-24 2E-28 218.7 7.5 196 170-381 140-352 (373)
26 3zq6_A Putative arsenical pump 99.9 3E-23 1E-27 209.2 11.1 205 173-380 13-301 (324)
27 2l6n_A Uncharacterized protein 99.9 9.3E-23 3.2E-27 175.5 8.4 88 423-515 10-98 (132)
28 2l6p_A PHAC1, PHAC2 and PHAD g 99.9 1.2E-22 4.1E-27 173.4 8.1 87 423-515 4-91 (124)
29 2woj_A ATPase GET3; tail-ancho 99.9 3.7E-23 1.3E-27 210.7 5.8 174 171-345 15-275 (354)
30 3iqw_A Tail-anchored protein t 99.9 1.1E-21 3.7E-26 197.8 12.1 202 170-379 12-303 (334)
31 2woo_A ATPase GET3; tail-ancho 99.8 3.1E-21 1E-25 194.9 9.4 204 172-379 17-300 (329)
32 3io3_A DEHA2D07832P; chaperone 99.8 2.5E-21 8.5E-26 196.1 7.3 205 170-379 14-312 (348)
33 1byi_A Dethiobiotin synthase; 99.8 3.1E-20 1.1E-24 176.8 13.0 196 174-381 2-208 (224)
34 3o2g_A Gamma-butyrobetaine dio 99.8 2E-20 7E-25 192.6 7.8 88 427-516 9-96 (388)
35 3igf_A ALL4481 protein; two-do 99.8 3.4E-19 1.2E-23 181.7 16.6 266 174-503 2-370 (374)
36 1ihu_A Arsenical pump-driving 99.7 5.4E-18 1.8E-22 184.5 7.9 205 171-380 324-569 (589)
37 1ihu_A Arsenical pump-driving 99.7 3.2E-18 1.1E-22 186.4 5.8 164 175-347 9-240 (589)
38 2xxa_A Signal recognition part 99.7 3.1E-18 1.1E-22 178.3 1.1 243 73-374 20-272 (433)
39 3lno_A Putative uncharacterize 99.6 3E-16 1E-20 131.3 7.1 85 73-158 6-91 (108)
40 1uwd_A Hypothetical protein TM 99.6 1.4E-15 4.8E-20 126.4 10.1 83 75-158 6-88 (103)
41 3cq1_A Putative uncharacterize 99.6 1.9E-15 6.4E-20 125.5 9.5 82 75-158 6-87 (103)
42 1j8m_F SRP54, signal recogniti 99.6 1.3E-14 4.4E-19 143.9 11.6 241 74-374 19-271 (297)
43 1zu4_A FTSY; GTPase, signal re 99.5 4E-14 1.4E-18 141.7 13.5 172 172-375 104-287 (320)
44 1ls1_A Signal recognition part 99.5 5.5E-14 1.9E-18 139.4 10.9 167 172-374 97-269 (295)
45 2ffh_A Protein (FFH); SRP54, s 99.5 1E-13 3.5E-18 143.3 11.5 241 73-374 20-269 (425)
46 3dm5_A SRP54, signal recogniti 99.5 7.6E-15 2.6E-19 151.9 2.1 241 74-374 22-271 (443)
47 3of5_A Dethiobiotin synthetase 99.4 2.4E-13 8.1E-18 129.6 10.4 194 171-377 2-206 (228)
48 2j37_W Signal recognition part 99.4 3.1E-14 1.1E-18 150.3 2.9 242 73-373 21-271 (504)
49 3kl4_A SRP54, signal recogniti 99.4 2.9E-14 9.9E-19 147.6 0.3 243 73-374 17-270 (433)
50 2v3c_C SRP54, signal recogniti 99.4 6.4E-12 2.2E-16 130.6 17.0 165 173-374 99-270 (432)
51 1yrb_A ATP(GTP)binding protein 99.4 4E-13 1.4E-17 130.5 5.9 46 172-218 12-57 (262)
52 3fgn_A Dethiobiotin synthetase 99.3 1.2E-11 4E-16 119.2 12.1 193 171-380 24-225 (251)
53 1vma_A Cell division protein F 99.3 4.9E-11 1.7E-15 118.4 14.3 168 172-375 103-282 (306)
54 3qxc_A Dethiobiotin synthetase 99.2 7.3E-11 2.5E-15 113.1 13.2 176 166-347 14-202 (242)
55 3ux2_A MIP18 family protein FA 99.2 9E-12 3.1E-16 105.3 3.2 77 76-152 9-91 (130)
56 2px0_A Flagellar biosynthesis 99.0 5.5E-10 1.9E-14 110.5 9.4 160 173-374 105-271 (296)
57 3p32_A Probable GTPase RV1496/ 98.8 1.3E-08 4.4E-13 103.4 10.3 151 172-346 78-229 (355)
58 2r8r_A Sensor protein; KDPD, P 98.7 2.6E-08 8.8E-13 93.5 7.0 44 173-216 5-48 (228)
59 3e70_C DPA, signal recognition 98.5 6.3E-08 2.2E-12 96.9 5.6 249 72-375 44-301 (328)
60 2yhs_A FTSY, cell division pro 98.4 1.1E-06 3.7E-11 91.9 10.7 168 172-375 292-471 (503)
61 2p67_A LAO/AO transport system 98.4 2.6E-06 8.8E-11 85.9 13.1 126 172-316 55-181 (341)
62 1rj9_A FTSY, signal recognitio 98.0 7.1E-05 2.4E-09 73.9 13.5 167 172-375 101-280 (304)
63 2obn_A Hypothetical protein; s 97.9 6E-05 2.1E-09 75.2 12.3 166 173-378 152-337 (349)
64 3pzx_A Formate--tetrahydrofola 97.9 7.8E-06 2.7E-10 83.6 4.8 52 171-225 55-109 (557)
65 4a0g_A Adenosylmethionine-8-am 97.9 6.4E-05 2.2E-09 84.3 12.0 88 280-380 201-298 (831)
66 2og2_A Putative signal recogni 97.7 0.00036 1.2E-08 70.4 13.9 41 173-214 157-197 (359)
67 3b9q_A Chloroplast SRP recepto 97.6 0.00079 2.7E-08 66.3 13.6 41 173-214 100-140 (302)
68 2rdo_7 EF-G, elongation factor 97.5 0.0004 1.4E-08 76.5 12.0 93 279-378 80-173 (704)
69 2h5e_A Peptide chain release f 97.4 0.0006 2.1E-08 72.5 11.1 88 279-373 80-167 (529)
70 1u94_A RECA protein, recombina 97.3 0.00034 1.2E-08 70.6 7.4 39 173-212 63-101 (356)
71 1g5t_A COB(I)alamin adenosyltr 97.3 0.00067 2.3E-08 62.0 8.4 36 176-212 31-66 (196)
72 1xjc_A MOBB protein homolog; s 97.2 0.0005 1.7E-08 61.6 6.2 42 172-214 3-44 (169)
73 1xp8_A RECA protein, recombina 97.1 0.001 3.4E-08 67.3 8.5 38 174-212 75-112 (366)
74 2www_A Methylmalonic aciduria 97.1 0.004 1.4E-07 62.5 12.7 43 173-216 74-116 (349)
75 3con_A GTPase NRAS; structural 96.9 0.013 4.4E-07 52.5 13.6 87 279-371 67-158 (190)
76 2ce2_X GTPase HRAS; signaling 96.9 0.01 3.5E-07 51.4 11.9 88 279-372 49-141 (166)
77 3luu_A Uncharacterized protein 96.8 0.00067 2.3E-08 55.3 3.0 35 482-516 7-42 (101)
78 2c78_A Elongation factor TU-A; 96.8 0.0072 2.5E-07 61.9 11.5 69 279-347 73-141 (405)
79 2zr9_A Protein RECA, recombina 96.8 0.0025 8.4E-08 64.1 7.7 39 173-212 61-99 (349)
80 2qm8_A GTPase/ATPase; G protei 96.7 0.011 3.8E-07 59.0 12.3 42 172-214 54-95 (337)
81 3iev_A GTP-binding protein ERA 96.7 0.011 3.7E-07 58.2 12.1 85 280-369 58-153 (308)
82 1kao_A RAP2A; GTP-binding prot 96.6 0.059 2E-06 46.5 15.2 67 280-347 50-121 (167)
83 3tr5_A RF-3, peptide chain rel 96.6 0.00088 3E-08 71.2 3.5 88 279-373 80-167 (528)
84 1dar_A EF-G, elongation factor 96.6 0.011 3.6E-07 65.0 12.1 86 279-371 75-160 (691)
85 3vqt_A RF-3, peptide chain rel 96.6 0.014 4.7E-07 62.2 12.6 90 277-373 96-185 (548)
86 3oes_A GTPase rhebl1; small GT 96.6 0.028 9.5E-07 51.0 13.2 87 279-370 70-161 (201)
87 2gf9_A RAS-related protein RAB 96.6 0.019 6.4E-07 51.5 11.6 86 280-370 70-159 (189)
88 2xex_A Elongation factor G; GT 96.5 0.015 5.1E-07 63.8 12.5 86 279-371 73-158 (693)
89 2yvu_A Probable adenylyl-sulfa 96.5 0.003 1E-07 57.0 5.8 40 173-213 13-52 (186)
90 2a9k_A RAS-related protein RAL 96.5 0.025 8.4E-07 50.2 11.7 67 280-347 65-136 (187)
91 2b8t_A Thymidine kinase; deoxy 96.5 0.011 3.8E-07 55.3 9.5 34 176-209 14-47 (223)
92 2g6b_A RAS-related protein RAB 96.4 0.049 1.7E-06 47.9 13.1 87 280-371 59-149 (180)
93 2nzj_A GTP-binding protein REM 96.4 0.04 1.4E-06 48.2 12.5 67 280-347 51-124 (175)
94 3dz8_A RAS-related protein RAB 96.3 0.01 3.5E-07 53.4 8.3 88 279-371 70-161 (191)
95 2elf_A Protein translation elo 96.3 0.017 5.9E-07 58.4 10.6 67 279-346 58-125 (370)
96 3hr8_A Protein RECA; alpha and 96.3 0.0069 2.4E-07 60.8 7.6 40 173-213 61-100 (356)
97 3t5g_A GTP-binding protein RHE 96.3 0.045 1.5E-06 48.4 12.3 86 280-370 53-143 (181)
98 1d2e_A Elongation factor TU (E 96.3 0.011 3.7E-07 60.5 9.1 69 279-347 64-132 (397)
99 3iby_A Ferrous iron transport 96.3 0.017 5.8E-07 55.2 9.9 89 279-375 46-146 (256)
100 1u8z_A RAS-related protein RAL 96.3 0.032 1.1E-06 48.3 11.0 67 280-347 51-122 (168)
101 1z2a_A RAS-related protein RAB 96.2 0.025 8.6E-07 49.1 9.9 87 280-371 53-142 (168)
102 3t1o_A Gliding protein MGLA; G 96.2 0.073 2.5E-06 47.5 13.3 68 279-347 72-148 (198)
103 2hxs_A RAB-26, RAS-related pro 96.2 0.09 3.1E-06 46.1 13.7 88 280-371 55-148 (178)
104 3clv_A RAB5 protein, putative; 96.2 0.1 3.5E-06 46.6 14.2 64 281-345 93-158 (208)
105 2g0t_A Conserved hypothetical 96.2 0.028 9.7E-07 56.0 11.1 137 173-343 169-323 (350)
106 1np6_A Molybdopterin-guanine d 96.1 0.0079 2.7E-07 54.0 6.4 42 172-214 5-46 (174)
107 1wf3_A GTP-binding protein; GT 96.1 0.029 9.8E-07 55.0 11.0 67 279-346 53-129 (301)
108 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0051 1.7E-07 59.0 5.3 40 173-213 4-43 (260)
109 4bas_A ADP-ribosylation factor 96.1 0.18 6.3E-06 45.0 15.4 68 279-347 61-140 (199)
110 1ky3_A GTP-binding protein YPT 96.0 0.12 4.2E-06 45.2 13.8 67 279-346 56-130 (182)
111 2gco_A H9, RHO-related GTP-bin 96.0 0.048 1.6E-06 49.4 11.3 67 280-347 72-142 (201)
112 3bc1_A RAS-related protein RAB 96.0 0.096 3.3E-06 46.5 13.2 87 280-371 69-160 (195)
113 2bcg_Y Protein YP2, GTP-bindin 96.0 0.079 2.7E-06 48.0 12.6 87 280-371 56-146 (206)
114 1g16_A RAS-related protein SEC 96.0 0.054 1.8E-06 47.0 10.9 86 280-371 51-140 (170)
115 2lkc_A Translation initiation 95.9 0.047 1.6E-06 48.0 10.6 66 280-346 54-119 (178)
116 2h57_A ADP-ribosylation factor 95.9 0.07 2.4E-06 47.6 11.9 68 279-347 65-139 (190)
117 2bov_A RAla, RAS-related prote 95.9 0.073 2.5E-06 48.0 12.1 86 280-370 61-151 (206)
118 1upt_A ARL1, ADP-ribosylation 95.9 0.21 7.1E-06 43.3 14.6 66 280-346 50-120 (171)
119 2efe_B Small GTP-binding prote 95.9 0.076 2.6E-06 46.7 11.7 87 280-370 60-149 (181)
120 2wsm_A Hydrogenase expression/ 95.9 0.0079 2.7E-07 55.6 5.2 39 173-213 30-68 (221)
121 1nks_A Adenylate kinase; therm 95.9 0.0071 2.4E-07 54.4 4.8 38 173-211 1-38 (194)
122 2fn4_A P23, RAS-related protei 95.8 0.073 2.5E-06 46.7 11.2 67 280-347 56-127 (181)
123 1rz3_A Hypothetical protein rb 95.7 0.013 4.4E-07 53.6 6.1 41 173-214 22-62 (201)
124 2dyk_A GTP-binding protein; GT 95.7 0.048 1.6E-06 46.9 9.6 66 280-346 48-120 (161)
125 3tkl_A RAS-related protein RAB 95.6 0.097 3.3E-06 46.7 11.6 89 280-373 64-156 (196)
126 2ew1_A RAS-related protein RAB 95.6 0.11 3.8E-06 47.2 12.0 87 280-371 74-164 (201)
127 2dr3_A UPF0273 protein PH0284; 95.6 0.013 4.5E-07 54.9 5.8 39 174-213 24-62 (247)
128 1r8s_A ADP-ribosylation factor 95.6 0.53 1.8E-05 40.3 15.9 67 279-346 42-113 (164)
129 1z0f_A RAB14, member RAS oncog 95.6 0.086 2.9E-06 46.1 10.9 86 280-370 63-152 (179)
130 2atv_A RERG, RAS-like estrogen 95.6 0.1 3.5E-06 46.8 11.6 85 280-370 75-164 (196)
131 1zbd_A Rabphilin-3A; G protein 95.5 0.2 7E-06 45.0 13.3 87 280-371 56-146 (203)
132 1z0j_A RAB-22, RAS-related pro 95.4 0.071 2.4E-06 46.2 9.6 87 280-370 54-143 (170)
133 3i8s_A Ferrous iron transport 95.4 0.12 4.1E-06 49.7 11.9 89 279-375 48-148 (274)
134 1zd9_A ADP-ribosylation factor 95.4 0.15 5.2E-06 45.4 11.9 68 279-347 65-137 (188)
135 2fg5_A RAB-22B, RAS-related pr 95.4 0.092 3.2E-06 47.1 10.5 68 279-347 70-141 (192)
136 3q72_A GTP-binding protein RAD 95.4 0.093 3.2E-06 45.4 10.1 86 280-370 48-138 (166)
137 1zj6_A ADP-ribosylation factor 95.4 0.62 2.1E-05 41.1 15.9 68 279-347 58-130 (187)
138 1z08_A RAS-related protein RAB 95.3 0.15 5.1E-06 44.1 11.4 87 280-371 54-144 (170)
139 4dsu_A GTPase KRAS, isoform 2B 95.3 0.18 6.1E-06 44.5 12.1 87 280-372 51-142 (189)
140 2cvh_A DNA repair and recombin 95.3 0.018 6.1E-07 53.0 5.5 36 174-213 21-56 (220)
141 1a7j_A Phosphoribulokinase; tr 95.3 0.0091 3.1E-07 58.3 3.5 41 173-214 5-45 (290)
142 3io5_A Recombination and repai 95.3 0.025 8.6E-07 55.5 6.5 37 175-212 30-68 (333)
143 2a5j_A RAS-related protein RAB 95.2 0.23 8E-06 44.2 12.6 86 280-370 69-158 (191)
144 2p5s_A RAS and EF-hand domain 95.2 0.12 4E-06 46.6 10.7 66 280-346 76-145 (199)
145 3bh0_A DNAB-like replicative h 95.2 0.018 6.3E-07 56.8 5.5 38 174-212 69-106 (315)
146 4dcu_A GTP-binding protein ENG 95.2 0.033 1.1E-06 57.9 7.7 67 279-346 69-143 (456)
147 2erx_A GTP-binding protein DI- 95.2 0.087 3E-06 45.7 9.4 67 280-347 50-122 (172)
148 1r2q_A RAS-related protein RAB 95.2 0.084 2.9E-06 45.7 9.2 68 280-347 54-124 (170)
149 3pqc_A Probable GTP-binding pr 95.2 0.088 3E-06 46.9 9.5 41 305-346 105-145 (195)
150 3kkq_A RAS-related protein M-R 95.2 0.12 4E-06 45.6 10.3 88 281-373 66-158 (183)
151 1uj2_A Uridine-cytidine kinase 95.2 0.015 5E-07 55.3 4.4 42 172-214 21-67 (252)
152 2il1_A RAB12; G-protein, GDP, 95.1 0.078 2.7E-06 47.6 9.0 67 280-347 74-144 (192)
153 3j25_A Tetracycline resistance 95.1 0.029 1E-06 60.9 7.1 89 277-372 63-151 (638)
154 2f1r_A Molybdopterin-guanine d 95.1 0.017 6E-07 51.6 4.4 41 172-213 1-41 (171)
155 1ega_A Protein (GTP-binding pr 95.1 0.11 3.9E-06 50.6 10.6 67 279-347 54-129 (301)
156 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.024 8.1E-07 52.5 5.5 39 174-213 24-62 (235)
157 2hf9_A Probable hydrogenase ni 95.0 0.02 7E-07 52.9 5.0 39 173-213 38-76 (226)
158 4fn5_A EF-G 1, elongation fact 95.0 0.24 8.3E-06 54.4 14.2 88 279-373 83-170 (709)
159 1x3s_A RAS-related protein RAB 95.0 0.14 4.7E-06 45.6 10.3 67 280-346 63-133 (195)
160 3cph_A RAS-related protein SEC 95.0 0.17 5.7E-06 45.9 11.0 86 280-371 68-157 (213)
161 3p26_A Elongation factor 1 alp 94.9 0.1 3.5E-06 54.6 10.4 69 279-347 109-184 (483)
162 1fzq_A ADP-ribosylation factor 94.9 0.34 1.2E-05 42.8 12.6 68 279-347 58-130 (181)
163 2dy1_A Elongation factor G; tr 94.9 0.11 3.7E-06 56.7 10.9 83 279-369 72-154 (665)
164 3lvq_E ARF-GAP with SH3 domain 94.9 0.33 1.1E-05 50.7 14.3 123 279-425 364-491 (497)
165 2pez_A Bifunctional 3'-phospho 94.9 0.032 1.1E-06 49.7 5.6 41 173-214 5-45 (179)
166 4a1f_A DNAB helicase, replicat 94.9 0.026 8.9E-07 56.2 5.4 37 175-212 48-84 (338)
167 2oil_A CATX-8, RAS-related pro 94.9 0.36 1.2E-05 43.0 12.7 67 280-347 73-143 (193)
168 3c5c_A RAS-like protein 12; GD 94.8 0.22 7.4E-06 44.4 11.2 85 280-370 68-159 (187)
169 2bme_A RAB4A, RAS-related prot 94.8 0.24 8.2E-06 43.7 11.4 66 281-347 59-128 (186)
170 2fv8_A H6, RHO-related GTP-bin 94.8 0.13 4.4E-06 46.7 9.7 67 280-347 72-142 (207)
171 3q85_A GTP-binding protein REM 94.8 0.19 6.4E-06 43.5 10.4 87 280-371 50-142 (169)
172 3bgw_A DNAB-like replicative h 94.8 0.022 7.7E-07 59.0 4.9 39 175-214 199-237 (444)
173 3uie_A Adenylyl-sulfate kinase 94.8 0.036 1.2E-06 50.5 5.8 41 172-213 24-64 (200)
174 1ksh_A ARF-like protein 2; sma 94.8 0.48 1.6E-05 41.7 13.3 68 279-347 60-132 (186)
175 2hup_A RAS-related protein RAB 94.7 0.29 9.9E-06 44.2 11.9 86 280-370 77-166 (201)
176 3tw8_B RAS-related protein RAB 94.7 0.13 4.5E-06 45.0 9.4 87 281-372 58-147 (181)
177 3lxx_A GTPase IMAP family memb 94.7 0.45 1.5E-05 44.2 13.5 21 174-195 30-50 (239)
178 3a1s_A Iron(II) transport prot 94.7 0.34 1.2E-05 46.0 12.6 89 279-375 50-146 (258)
179 3k53_A Ferrous iron transport 94.6 0.12 4E-06 49.5 9.3 89 279-375 48-145 (271)
180 2w58_A DNAI, primosome compone 94.6 0.037 1.3E-06 50.3 5.5 37 174-211 55-91 (202)
181 1ek0_A Protein (GTP-binding pr 94.6 0.2 6.9E-06 43.1 10.1 89 280-370 51-143 (170)
182 4dhe_A Probable GTP-binding pr 94.5 0.15 5.1E-06 46.7 9.5 66 279-346 77-156 (223)
183 3cbq_A GTP-binding protein REM 94.5 0.31 1.1E-05 43.8 11.5 67 280-347 71-143 (195)
184 2b6h_A ADP-ribosylation factor 94.5 0.44 1.5E-05 42.6 12.4 82 279-370 71-157 (192)
185 1m7g_A Adenylylsulfate kinase; 94.4 0.032 1.1E-06 51.3 4.6 40 172-212 24-64 (211)
186 2x77_A ADP-ribosylation factor 94.4 0.43 1.5E-05 42.2 12.2 67 279-346 64-135 (189)
187 3lxw_A GTPase IMAP family memb 94.4 0.12 4.2E-06 48.8 8.8 67 279-347 68-152 (247)
188 3ec2_A DNA replication protein 94.4 0.03 1E-06 49.9 4.2 36 174-210 39-75 (180)
189 1jny_A EF-1-alpha, elongation 94.4 0.16 5.6E-06 52.2 10.4 70 278-347 81-157 (435)
190 2hjg_A GTP-binding protein ENG 94.3 0.074 2.5E-06 54.9 7.6 68 279-347 49-124 (436)
191 3reg_A RHO-like small GTPase; 94.3 0.2 6.8E-06 44.8 9.5 89 280-371 70-162 (194)
192 1moz_A ARL1, ADP-ribosylation 94.2 0.67 2.3E-05 40.5 12.8 66 280-346 61-131 (183)
193 2o52_A RAS-related protein RAB 94.2 0.27 9.1E-06 44.4 10.3 67 280-347 73-143 (200)
194 2h17_A ADP-ribosylation factor 94.2 0.31 1.1E-05 42.9 10.5 67 279-346 63-134 (181)
195 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.61 2.1E-05 40.5 12.3 67 280-347 55-129 (177)
196 2pbr_A DTMP kinase, thymidylat 94.1 0.062 2.1E-06 48.1 5.8 34 175-209 2-35 (195)
197 1cr0_A DNA primase/helicase; R 94.0 0.061 2.1E-06 52.2 5.9 38 174-212 36-74 (296)
198 3t61_A Gluconokinase; PSI-biol 94.0 0.032 1.1E-06 50.8 3.7 39 169-213 14-52 (202)
199 3cpj_B GTP-binding protein YPT 94.0 0.48 1.6E-05 43.4 11.8 67 280-347 61-131 (223)
200 2ywe_A GTP-binding protein LEP 94.0 0.26 9.1E-06 52.8 11.2 84 280-370 72-155 (600)
201 1kht_A Adenylate kinase; phosp 94.0 0.036 1.2E-06 49.6 3.9 37 174-211 4-40 (192)
202 2xtp_A GTPase IMAP family memb 94.0 0.14 4.9E-06 48.4 8.3 21 174-195 23-43 (260)
203 2y8e_A RAB-protein 6, GH09086P 94.0 0.27 9.2E-06 42.8 9.6 67 280-347 62-132 (179)
204 1z06_A RAS-related protein RAB 94.0 0.47 1.6E-05 42.0 11.3 88 280-372 68-161 (189)
205 2zts_A Putative uncharacterize 93.9 0.056 1.9E-06 50.6 5.2 38 176-213 32-70 (251)
206 1m2o_B GTP-binding protein SAR 93.9 0.47 1.6E-05 42.3 11.3 82 279-370 65-151 (190)
207 3sjy_A Translation initiation 93.9 0.17 6E-06 51.4 9.2 66 281-346 75-141 (403)
208 2atx_A Small GTP binding prote 93.8 0.59 2E-05 41.5 11.8 67 280-347 65-135 (194)
209 3cmw_A Protein RECA, recombina 93.8 0.082 2.8E-06 63.0 7.4 41 173-214 383-423 (1706)
210 3q3j_B RHO-related GTP-binding 93.8 0.62 2.1E-05 42.5 12.1 68 279-347 73-144 (214)
211 2gks_A Bifunctional SAT/APS ki 93.8 0.053 1.8E-06 57.7 5.2 39 173-212 372-410 (546)
212 2j69_A Bacterial dynamin-like 93.8 0.16 5.3E-06 55.8 9.1 65 281-347 174-243 (695)
213 1qhx_A CPT, protein (chloramph 93.7 0.042 1.4E-06 48.7 3.7 35 174-212 4-38 (178)
214 1xx6_A Thymidine kinase; NESG, 93.7 0.095 3.2E-06 47.6 6.2 36 173-209 8-43 (191)
215 1e6c_A Shikimate kinase; phosp 93.7 0.034 1.2E-06 49.0 3.1 35 172-212 1-35 (173)
216 2z0h_A DTMP kinase, thymidylat 93.7 0.083 2.8E-06 47.5 5.8 35 175-210 2-36 (197)
217 3llu_A RAS-related GTP-binding 93.7 0.65 2.2E-05 41.5 11.9 67 279-346 67-141 (196)
218 2q6t_A DNAB replication FORK h 93.7 0.064 2.2E-06 55.5 5.5 38 174-212 201-239 (444)
219 3o47_A ADP-ribosylation factor 93.7 0.31 1.1E-05 48.1 10.4 83 279-371 207-294 (329)
220 3bos_A Putative DNA replicatio 93.6 0.09 3.1E-06 48.6 6.1 38 174-212 53-90 (242)
221 1mky_A Probable GTP-binding pr 93.6 0.35 1.2E-05 49.7 11.2 66 279-345 47-121 (439)
222 2g3y_A GTP-binding protein GEM 93.6 0.79 2.7E-05 42.0 12.3 67 280-347 86-158 (211)
223 2gf0_A GTP-binding protein DI- 93.6 0.23 7.7E-06 44.4 8.5 85 280-370 55-145 (199)
224 1q57_A DNA primase/helicase; d 93.5 0.047 1.6E-06 57.5 4.3 39 174-213 243-282 (503)
225 2ged_A SR-beta, signal recogni 93.5 0.31 1.1E-05 43.3 9.3 21 174-195 49-69 (193)
226 2r6a_A DNAB helicase, replicat 93.5 0.078 2.7E-06 55.0 5.8 39 174-213 204-243 (454)
227 1via_A Shikimate kinase; struc 93.5 0.037 1.3E-06 49.1 2.9 35 172-212 3-37 (175)
228 1c1y_A RAS-related protein RAP 93.4 0.48 1.7E-05 40.6 10.2 68 279-347 49-121 (167)
229 2kjq_A DNAA-related protein; s 93.4 0.073 2.5E-06 46.2 4.6 38 173-211 36-73 (149)
230 2orw_A Thymidine kinase; TMTK, 93.4 0.075 2.6E-06 47.9 4.8 36 174-210 4-39 (184)
231 3trf_A Shikimate kinase, SK; a 93.3 0.049 1.7E-06 48.6 3.4 35 172-212 4-38 (185)
232 3avx_A Elongation factor TS, e 93.2 0.2 7E-06 57.3 8.9 69 279-347 357-425 (1289)
233 3cmu_A Protein RECA, recombina 93.2 0.12 4.1E-06 62.4 7.4 41 173-214 383-423 (2050)
234 1nn5_A Similar to deoxythymidy 93.2 0.11 3.8E-06 47.4 5.8 36 173-209 9-44 (215)
235 1f6b_A SAR1; gtpases, N-termin 93.2 0.49 1.7E-05 42.6 10.1 66 280-346 68-138 (198)
236 3ihw_A Centg3; RAS, centaurin, 93.1 1.3 4.6E-05 39.0 12.8 82 280-369 66-152 (184)
237 1g7s_A Translation initiation 93.1 0.7 2.4E-05 49.5 12.6 67 280-347 69-135 (594)
238 3c8u_A Fructokinase; YP_612366 93.0 0.13 4.4E-06 47.0 6.0 40 173-213 22-61 (208)
239 3cmw_A Protein RECA, recombina 93.0 0.12 4.2E-06 61.5 7.0 41 173-214 732-772 (1706)
240 2iyv_A Shikimate kinase, SK; t 92.9 0.04 1.4E-06 49.3 2.2 34 173-212 2-35 (184)
241 4dkx_A RAS-related protein RAB 92.8 0.82 2.8E-05 42.1 11.2 89 279-372 60-152 (216)
242 2z43_A DNA repair and recombin 92.7 0.072 2.5E-06 52.6 4.0 40 173-213 107-152 (324)
243 3tqc_A Pantothenate kinase; bi 92.7 0.13 4.3E-06 50.8 5.6 41 173-214 92-134 (321)
244 2wwf_A Thymidilate kinase, put 92.6 0.14 5E-06 46.5 5.7 36 173-209 10-45 (212)
245 1ly1_A Polynucleotide kinase; 92.6 0.1 3.4E-06 46.1 4.5 35 173-212 2-36 (181)
246 2qgz_A Helicase loader, putati 92.6 0.14 4.7E-06 50.2 5.8 38 173-211 152-190 (308)
247 2r2a_A Uncharacterized protein 92.6 0.075 2.6E-06 48.6 3.6 39 172-211 4-48 (199)
248 1n0u_A EF-2, elongation factor 92.5 0.28 9.5E-06 55.0 8.9 68 279-347 96-163 (842)
249 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.3 1E-05 42.8 7.5 67 280-347 52-122 (186)
250 4dcu_A GTP-binding protein ENG 92.5 0.73 2.5E-05 47.6 11.5 67 280-347 242-319 (456)
251 3cb4_D GTP-binding protein LEP 92.4 0.37 1.3E-05 51.6 9.4 85 279-370 69-153 (599)
252 1sq5_A Pantothenate kinase; P- 92.4 0.12 4.3E-06 50.5 5.2 41 173-214 80-122 (308)
253 1zo1_I IF2, translation initia 92.4 0.26 8.8E-06 51.6 7.9 67 280-347 50-116 (501)
254 1svi_A GTP-binding protein YSX 92.4 0.56 1.9E-05 41.6 9.3 41 306-347 107-147 (195)
255 1v5w_A DMC1, meiotic recombina 92.4 0.12 3.9E-06 51.6 5.0 40 173-213 122-167 (343)
256 1x6v_B Bifunctional 3'-phospho 92.3 0.12 4E-06 55.7 5.3 42 172-214 51-92 (630)
257 2axn_A 6-phosphofructo-2-kinas 92.3 0.14 4.7E-06 54.2 5.7 39 173-212 35-73 (520)
258 1m8p_A Sulfate adenylyltransfe 92.3 0.12 4.1E-06 55.2 5.3 40 172-212 395-435 (573)
259 2ze6_A Isopentenyl transferase 92.2 0.11 3.6E-06 49.4 4.3 34 173-212 1-34 (253)
260 2if2_A Dephospho-COA kinase; a 92.2 0.069 2.4E-06 48.5 2.9 33 173-212 1-33 (204)
261 1nlf_A Regulatory protein REPA 92.2 0.14 4.9E-06 49.1 5.4 38 174-212 31-78 (279)
262 1vco_A CTP synthetase; tetrame 92.2 0.17 5.7E-06 53.5 6.2 45 172-216 11-56 (550)
263 3d3q_A TRNA delta(2)-isopenten 92.2 0.12 4E-06 51.3 4.7 34 174-213 8-41 (340)
264 1jjv_A Dephospho-COA kinase; P 92.1 0.1 3.4E-06 47.6 3.9 34 172-212 1-34 (206)
265 1jbk_A CLPB protein; beta barr 92.1 0.18 6.1E-06 44.4 5.5 36 174-210 44-86 (195)
266 1odf_A YGR205W, hypothetical 3 92.0 0.1 3.6E-06 50.7 4.1 40 173-213 31-73 (290)
267 3t34_A Dynamin-related protein 92.0 1.2 4E-05 44.4 12.0 67 280-347 135-216 (360)
268 1kag_A SKI, shikimate kinase I 91.9 0.072 2.5E-06 46.9 2.6 35 172-212 3-37 (173)
269 3crm_A TRNA delta(2)-isopenten 91.9 0.12 4.1E-06 51.0 4.3 36 172-213 4-39 (323)
270 1ukz_A Uridylate kinase; trans 91.9 0.12 4E-06 46.9 4.1 36 170-211 12-47 (203)
271 1n0w_A DNA repair protein RAD5 91.9 0.12 4.1E-06 48.1 4.2 38 174-212 25-68 (243)
272 2v54_A DTMP kinase, thymidylat 91.8 0.12 4E-06 46.8 4.0 35 173-210 4-38 (204)
273 1vg8_A RAS-related protein RAB 91.8 0.32 1.1E-05 43.7 6.9 68 279-347 55-130 (207)
274 1qf9_A UMP/CMP kinase, protein 91.8 0.12 4.3E-06 46.0 4.1 34 172-211 5-38 (194)
275 1gwn_A RHO-related GTP-binding 91.7 1.9 6.6E-05 38.8 12.3 67 280-347 75-145 (205)
276 3dpu_A RAB family protein; roc 91.7 0.39 1.3E-05 50.8 8.5 66 279-347 96-163 (535)
277 2plr_A DTMP kinase, probable t 91.7 0.18 6E-06 45.8 5.1 34 174-209 5-38 (213)
278 1gtv_A TMK, thymidylate kinase 91.7 0.057 2E-06 49.3 1.8 35 175-210 2-36 (214)
279 4gzl_A RAS-related C3 botulinu 91.7 0.35 1.2E-05 43.7 7.1 68 279-347 76-147 (204)
280 1wb1_A Translation elongation 91.7 0.38 1.3E-05 50.2 8.1 67 279-346 71-137 (482)
281 2l6n_A Uncharacterized protein 91.6 0.081 2.8E-06 44.9 2.4 29 487-516 16-44 (132)
282 3bwd_D RAC-like GTP-binding pr 91.6 0.82 2.8E-05 39.8 9.3 67 280-347 55-125 (182)
283 3asz_A Uridine kinase; cytidin 91.5 0.18 6.1E-06 46.0 4.9 38 173-214 6-43 (211)
284 3mca_A HBS1, elongation factor 91.5 0.059 2E-06 58.0 1.7 69 279-347 253-328 (592)
285 1kk1_A EIF2gamma; initiation o 91.5 0.47 1.6E-05 48.3 8.5 66 281-346 83-149 (410)
286 3vaa_A Shikimate kinase, SK; s 91.4 0.12 4E-06 47.0 3.5 34 173-212 25-58 (199)
287 3kb2_A SPBC2 prophage-derived 91.4 0.13 4.6E-06 44.9 3.8 34 173-212 1-34 (173)
288 1s1m_A CTP synthase; CTP synth 91.4 0.24 8.1E-06 52.3 6.2 44 173-216 3-47 (545)
289 2rhm_A Putative kinase; P-loop 91.3 0.13 4.6E-06 45.9 3.7 33 173-211 5-37 (193)
290 1knq_A Gluconate kinase; ALFA/ 91.3 0.22 7.6E-06 43.8 5.1 35 173-213 8-42 (175)
291 4edh_A DTMP kinase, thymidylat 91.2 0.26 8.8E-06 45.5 5.6 35 174-209 7-41 (213)
292 2j9r_A Thymidine kinase; TK1, 91.1 0.33 1.1E-05 44.7 6.2 36 173-209 28-63 (214)
293 2qt1_A Nicotinamide riboside k 91.1 0.12 4E-06 47.1 3.2 37 172-213 20-56 (207)
294 2bwj_A Adenylate kinase 5; pho 90.9 0.12 3.9E-06 46.6 2.9 34 173-212 12-45 (199)
295 3izy_P Translation initiation 90.9 0.22 7.6E-06 52.6 5.4 67 280-347 51-117 (537)
296 3ake_A Cytidylate kinase; CMP 90.8 0.12 4.3E-06 46.7 3.1 33 174-212 3-35 (208)
297 2p65_A Hypothetical protein PF 90.8 0.2 7E-06 44.0 4.4 25 175-200 45-69 (187)
298 3ld9_A DTMP kinase, thymidylat 90.8 0.24 8.2E-06 46.1 5.0 41 173-214 21-62 (223)
299 3jvv_A Twitching mobility prot 90.7 2.2 7.4E-05 42.5 12.3 35 174-209 124-159 (356)
300 1uf9_A TT1252 protein; P-loop, 90.6 0.18 6.3E-06 45.4 4.0 36 170-212 5-40 (203)
301 1nrj_B SR-beta, signal recogni 90.6 0.34 1.2E-05 44.1 6.0 22 174-196 13-34 (218)
302 2cdn_A Adenylate kinase; phosp 90.5 0.19 6.6E-06 45.4 4.1 34 172-211 19-52 (201)
303 2qpt_A EH domain-containing pr 90.5 0.39 1.3E-05 51.0 7.0 65 282-347 155-231 (550)
304 1m7b_A RND3/RHOE small GTP-bin 90.5 1.8 6.1E-05 38.0 10.5 68 279-347 53-124 (184)
305 4hlc_A DTMP kinase, thymidylat 90.5 0.25 8.6E-06 45.3 4.8 36 172-209 1-36 (205)
306 2p5t_B PEZT; postsegregational 90.4 0.16 5.4E-06 48.1 3.5 37 174-214 33-69 (253)
307 3gj0_A GTP-binding nuclear pro 90.3 0.43 1.5E-05 43.6 6.3 68 279-347 62-132 (221)
308 1g8f_A Sulfate adenylyltransfe 90.3 0.18 6.3E-06 52.9 4.2 39 173-212 395-435 (511)
309 2f6r_A COA synthase, bifunctio 90.2 0.21 7.2E-06 48.1 4.3 35 171-212 73-107 (281)
310 2ehv_A Hypothetical protein PH 90.1 0.31 1.1E-05 45.4 5.3 39 173-212 30-69 (251)
311 2grj_A Dephospho-COA kinase; T 90.1 0.23 7.8E-06 45.0 4.1 34 174-213 13-46 (192)
312 1tev_A UMP-CMP kinase; ploop, 90.0 0.23 7.8E-06 44.3 4.1 32 174-211 4-35 (196)
313 3lw7_A Adenylate kinase relate 90.0 0.18 6E-06 44.0 3.2 27 175-206 3-29 (179)
314 1y63_A LMAJ004144AAA protein; 90.0 0.26 8.8E-06 44.0 4.4 35 173-212 10-44 (184)
315 2ewv_A Twitching motility prot 89.8 2.7 9.2E-05 42.1 12.2 37 173-210 136-173 (372)
316 1zuh_A Shikimate kinase; alpha 89.8 0.23 7.9E-06 43.4 3.8 34 173-212 7-40 (168)
317 2i1q_A DNA repair and recombin 89.7 0.2 7E-06 49.1 3.7 39 174-213 99-153 (322)
318 4eun_A Thermoresistant glucoki 89.7 0.31 1.1E-05 44.1 4.7 34 173-212 29-62 (200)
319 1gvn_B Zeta; postsegregational 89.5 0.22 7.4E-06 48.2 3.7 36 175-213 34-69 (287)
320 2jeo_A Uridine-cytidine kinase 89.4 0.36 1.2E-05 45.3 5.1 39 173-212 25-68 (245)
321 2vhj_A Ntpase P4, P4; non- hyd 89.4 0.14 4.8E-06 50.4 2.2 34 174-211 124-157 (331)
322 1ak2_A Adenylate kinase isoenz 89.3 0.28 9.4E-06 45.7 4.1 38 168-211 11-48 (233)
323 3lv8_A DTMP kinase, thymidylat 89.2 0.43 1.5E-05 44.8 5.4 35 173-208 27-62 (236)
324 2pt5_A Shikimate kinase, SK; a 89.1 0.2 6.9E-06 43.6 2.9 32 175-212 2-33 (168)
325 3be4_A Adenylate kinase; malar 89.1 0.22 7.6E-06 45.8 3.3 33 173-211 5-37 (217)
326 3hjn_A DTMP kinase, thymidylat 88.8 0.49 1.7E-05 43.0 5.4 33 176-209 3-35 (197)
327 4tmk_A Protein (thymidylate ki 88.8 0.49 1.7E-05 43.6 5.4 34 174-208 4-38 (213)
328 3r7w_A Gtpase1, GTP-binding pr 88.7 0.43 1.5E-05 46.5 5.3 68 279-347 50-128 (307)
329 4eaq_A DTMP kinase, thymidylat 88.6 0.41 1.4E-05 44.6 4.8 35 172-208 25-59 (229)
330 1zun_B Sulfate adenylate trans 88.6 0.83 2.8E-05 46.9 7.5 69 279-347 102-170 (434)
331 1l8q_A Chromosomal replication 88.6 0.45 1.5E-05 46.5 5.3 36 175-211 39-74 (324)
332 3e1s_A Exodeoxyribonuclease V, 88.5 0.43 1.5E-05 51.0 5.5 33 176-208 206-238 (574)
333 3iij_A Coilin-interacting nucl 88.5 0.29 9.9E-06 43.3 3.5 32 174-211 12-43 (180)
334 2j0v_A RAC-like GTP-binding pr 88.5 1.9 6.6E-05 38.7 9.3 68 279-347 55-126 (212)
335 2qby_B CDC6 homolog 3, cell di 88.5 0.39 1.3E-05 47.9 4.9 37 174-211 46-90 (384)
336 1aky_A Adenylate kinase; ATP:A 88.4 0.33 1.1E-05 44.5 4.0 33 173-211 4-36 (220)
337 1zp6_A Hypothetical protein AT 88.3 0.31 1.1E-05 43.4 3.7 34 174-211 10-43 (191)
338 3n70_A Transport activator; si 88.2 0.23 7.7E-06 42.6 2.5 35 176-212 27-61 (145)
339 4fcw_A Chaperone protein CLPB; 88.2 0.54 1.8E-05 45.4 5.5 38 175-213 49-86 (311)
340 2c95_A Adenylate kinase 1; tra 88.1 0.34 1.2E-05 43.3 3.7 33 173-211 9-41 (196)
341 3t15_A Ribulose bisphosphate c 87.9 0.41 1.4E-05 46.3 4.5 33 174-210 37-69 (293)
342 3v9p_A DTMP kinase, thymidylat 87.8 0.44 1.5E-05 44.4 4.4 35 174-209 26-64 (227)
343 2orv_A Thymidine kinase; TP4A 87.8 0.65 2.2E-05 43.3 5.5 39 171-210 17-55 (234)
344 3def_A T7I23.11 protein; chlor 87.6 0.65 2.2E-05 44.0 5.6 20 175-195 38-57 (262)
345 3cm0_A Adenylate kinase; ATP-b 87.5 0.42 1.5E-05 42.3 4.0 32 174-211 5-36 (186)
346 2vli_A Antibiotic resistance p 87.3 0.23 7.8E-06 43.9 2.1 30 173-206 5-34 (183)
347 4a74_A DNA repair and recombin 87.2 0.47 1.6E-05 43.5 4.2 39 173-212 25-69 (231)
348 2qby_A CDC6 homolog 1, cell di 87.1 0.44 1.5E-05 47.3 4.3 38 174-212 46-86 (386)
349 3aez_A Pantothenate kinase; tr 87.1 0.78 2.7E-05 44.9 6.0 40 173-213 90-131 (312)
350 2a5y_B CED-4; apoptosis; HET: 87.0 0.38 1.3E-05 51.0 3.9 23 173-196 152-174 (549)
351 1f60_A Elongation factor EEF1A 86.9 1.6 5.4E-05 45.2 8.4 69 279-347 83-158 (458)
352 2c5m_A CTP synthase; cytidine 86.9 0.71 2.4E-05 43.3 5.1 45 172-216 22-67 (294)
353 1ltq_A Polynucleotide kinase; 86.8 0.42 1.5E-05 46.1 3.9 34 174-212 3-36 (301)
354 1cke_A CK, MSSA, protein (cyti 86.8 0.49 1.7E-05 43.4 4.1 32 174-211 6-37 (227)
355 3lda_A DNA repair protein RAD5 86.7 0.43 1.5E-05 48.5 4.0 39 173-212 178-222 (400)
356 3a8t_A Adenylate isopentenyltr 86.6 0.47 1.6E-05 46.9 4.0 34 174-213 41-74 (339)
357 3upu_A ATP-dependent DNA helic 86.5 0.69 2.3E-05 47.8 5.5 33 176-208 47-80 (459)
358 1pzn_A RAD51, DNA repair and r 86.4 0.52 1.8E-05 46.9 4.3 39 173-212 131-175 (349)
359 3syl_A Protein CBBX; photosynt 86.3 0.75 2.6E-05 44.4 5.4 36 174-210 68-107 (309)
360 4b3f_X DNA-binding protein smu 86.3 0.67 2.3E-05 50.2 5.5 35 176-210 207-241 (646)
361 3exa_A TRNA delta(2)-isopenten 86.2 0.58 2E-05 45.8 4.4 32 176-212 5-36 (322)
362 1zak_A Adenylate kinase; ATP:A 86.1 0.41 1.4E-05 44.0 3.2 25 173-198 5-29 (222)
363 2jaq_A Deoxyguanosine kinase; 86.1 0.52 1.8E-05 42.3 3.8 23 175-198 2-24 (205)
364 3cmu_A Protein RECA, recombina 85.9 0.63 2.1E-05 56.4 5.3 40 173-213 1427-1466(2050)
365 3do6_A Formate--tetrahydrofola 85.8 0.55 1.9E-05 48.0 4.0 44 171-217 41-87 (543)
366 1zd8_A GTP:AMP phosphotransfer 85.7 0.39 1.3E-05 44.3 2.8 33 173-211 7-39 (227)
367 2bbw_A Adenylate kinase 4, AK4 85.5 0.59 2E-05 43.7 4.0 26 172-198 26-51 (246)
368 3tlx_A Adenylate kinase 2; str 85.5 0.7 2.4E-05 43.3 4.5 33 173-211 29-61 (243)
369 2chg_A Replication factor C sm 85.5 0.4 1.4E-05 43.3 2.7 34 176-210 41-74 (226)
370 1fnn_A CDC6P, cell division co 85.3 0.93 3.2E-05 45.1 5.6 37 175-212 46-83 (389)
371 2v1u_A Cell division control p 85.2 0.57 2E-05 46.5 4.0 38 174-212 45-88 (387)
372 1w4r_A Thymidine kinase; type 85.2 1.2 4E-05 40.4 5.6 43 168-211 15-57 (195)
373 2bdt_A BH3686; alpha-beta prot 85.1 0.56 1.9E-05 41.7 3.5 35 173-212 2-36 (189)
374 1e4v_A Adenylate kinase; trans 85.0 0.51 1.8E-05 43.1 3.3 31 175-211 2-32 (214)
375 3fb4_A Adenylate kinase; psych 85.0 0.58 2E-05 42.6 3.6 31 175-211 2-32 (216)
376 2fu5_C RAS-related protein RAB 84.8 4.1 0.00014 35.3 9.1 86 280-370 56-145 (183)
377 1w78_A FOLC bifunctional prote 84.4 1.2 4.2E-05 45.4 6.1 34 172-208 48-81 (422)
378 2vo1_A CTP synthase 1; pyrimid 84.3 1.9 6.5E-05 40.7 6.7 46 172-217 22-68 (295)
379 1vht_A Dephospho-COA kinase; s 84.3 0.96 3.3E-05 41.2 4.8 32 174-212 5-36 (218)
380 3ch4_B Pmkase, phosphomevalona 84.3 0.7 2.4E-05 42.1 3.7 27 171-198 9-35 (202)
381 3umf_A Adenylate kinase; rossm 84.1 0.84 2.9E-05 42.1 4.3 26 172-198 28-53 (217)
382 2bjv_A PSP operon transcriptio 84.0 0.64 2.2E-05 43.9 3.5 36 176-212 32-67 (265)
383 3cr8_A Sulfate adenylyltranfer 83.8 0.71 2.4E-05 49.0 4.0 39 173-212 369-408 (552)
384 2xb4_A Adenylate kinase; ATP-b 83.6 0.69 2.4E-05 42.6 3.5 31 175-211 2-32 (223)
385 3foz_A TRNA delta(2)-isopenten 83.6 1.3 4.6E-05 43.1 5.6 34 173-212 10-43 (316)
386 1tf7_A KAIC; homohexamer, hexa 83.6 1.1 3.7E-05 47.2 5.4 38 173-211 281-318 (525)
387 4ag6_A VIRB4 ATPase, type IV s 83.4 1.1 3.9E-05 45.0 5.3 35 176-211 38-72 (392)
388 2z4s_A Chromosomal replication 83.3 0.9 3.1E-05 46.7 4.5 37 174-211 131-169 (440)
389 1w5s_A Origin recognition comp 83.1 0.94 3.2E-05 45.5 4.6 33 180-212 58-96 (412)
390 3orf_A Dihydropteridine reduct 83.1 0.93 3.2E-05 42.5 4.2 42 167-213 16-57 (251)
391 3dl0_A Adenylate kinase; phosp 82.9 0.63 2.1E-05 42.4 2.9 31 175-211 2-32 (216)
392 1kgd_A CASK, peripheral plasma 82.9 0.73 2.5E-05 40.8 3.2 25 173-198 5-29 (180)
393 3j2k_7 ERF3, eukaryotic polype 82.9 1.7 5.8E-05 44.6 6.4 68 279-346 93-167 (439)
394 2qz4_A Paraplegin; AAA+, SPG7, 82.8 1.6 5.5E-05 40.7 5.8 34 174-211 40-73 (262)
395 1bif_A 6-phosphofructo-2-kinas 82.6 1.3 4.4E-05 45.9 5.5 38 174-212 40-77 (469)
396 2eyu_A Twitching motility prot 82.6 1.7 5.8E-05 41.2 5.9 38 173-211 25-63 (261)
397 1jbw_A Folylpolyglutamate synt 82.5 1.4 4.9E-05 45.0 5.7 33 173-208 39-71 (428)
398 4e22_A Cytidylate kinase; P-lo 82.5 0.86 3E-05 42.9 3.8 27 171-198 25-51 (252)
399 2e87_A Hypothetical protein PH 82.5 11 0.00036 37.3 12.0 66 280-346 213-292 (357)
400 3gee_A MNME, tRNA modification 82.4 2.5 8.5E-05 43.9 7.5 65 279-347 279-356 (476)
401 1w36_D RECD, exodeoxyribonucle 82.3 1.2 4E-05 47.9 5.1 33 176-208 166-202 (608)
402 3eag_A UDP-N-acetylmuramate:L- 82.2 1.3 4.5E-05 43.4 5.1 32 173-207 108-139 (326)
403 3tau_A Guanylate kinase, GMP k 82.1 0.93 3.2E-05 41.2 3.7 26 172-198 7-32 (208)
404 1ofh_A ATP-dependent HSL prote 81.8 1.4 4.9E-05 42.1 5.2 34 175-212 52-85 (310)
405 1lnz_A SPO0B-associated GTP-bi 81.8 1.7 5.7E-05 43.1 5.6 65 281-346 206-286 (342)
406 3nva_A CTP synthase; rossman f 81.8 2.1 7.1E-05 44.7 6.4 44 173-216 3-47 (535)
407 3nrs_A Dihydrofolate:folylpoly 81.7 1.8 6.2E-05 44.4 6.1 35 171-208 50-84 (437)
408 2qor_A Guanylate kinase; phosp 81.4 0.72 2.5E-05 41.7 2.6 24 174-198 13-36 (204)
409 3geh_A MNME, tRNA modification 81.3 2.5 8.5E-05 43.7 7.0 66 279-347 270-343 (462)
410 3ged_A Short-chain dehydrogena 81.2 1.1 3.7E-05 42.3 3.9 36 172-212 1-36 (247)
411 2wkq_A NPH1-1, RAS-related C3 80.9 2.9 0.0001 40.4 7.1 66 280-346 202-271 (332)
412 2i3b_A HCR-ntpase, human cance 80.7 1.2 4.2E-05 40.0 3.9 27 175-202 3-29 (189)
413 1z6t_A APAF-1, apoptotic prote 80.5 1 3.5E-05 47.9 3.9 40 172-212 146-189 (591)
414 3r20_A Cytidylate kinase; stru 80.3 1.2 4.2E-05 41.5 3.9 33 174-212 10-42 (233)
415 1e8c_A UDP-N-acetylmuramoylala 80.3 1.9 6.6E-05 45.0 5.8 35 172-209 107-141 (498)
416 1c9k_A COBU, adenosylcobinamid 80.3 0.9 3.1E-05 40.6 2.8 32 176-212 2-33 (180)
417 2j41_A Guanylate kinase; GMP, 80.2 1.2 3.9E-05 40.1 3.6 24 174-198 7-30 (207)
418 4ehx_A Tetraacyldisaccharide 4 79.9 2.3 7.7E-05 41.6 5.8 37 174-212 37-74 (315)
419 3izq_1 HBS1P, elongation facto 79.9 3.4 0.00012 44.3 7.7 69 279-347 243-318 (611)
420 2dtx_A Glucose 1-dehydrogenase 79.7 5.2 0.00018 37.5 8.3 36 173-213 8-43 (264)
421 2yc2_C IFT27, small RAB-relate 79.7 6.3 0.00022 34.8 8.5 86 280-370 72-165 (208)
422 1njg_A DNA polymerase III subu 79.6 1.5 5.2E-05 39.7 4.3 27 174-201 46-72 (250)
423 1d2n_A N-ethylmaleimide-sensit 79.3 2.5 8.6E-05 39.9 5.8 32 174-209 65-96 (272)
424 1lv7_A FTSH; alpha/beta domain 79.2 2.1 7.3E-05 40.0 5.2 31 175-209 47-77 (257)
425 2wtz_A UDP-N-acetylmuramoyl-L- 79.2 2.2 7.6E-05 45.0 5.9 35 172-209 145-179 (535)
426 1nij_A Hypothetical protein YJ 79.1 1.1 3.8E-05 43.8 3.3 37 173-212 4-40 (318)
427 3tr0_A Guanylate kinase, GMP k 79.0 1.3 4.5E-05 39.6 3.6 25 173-198 7-31 (205)
428 2gk6_A Regulator of nonsense t 79.0 1.7 5.9E-05 46.7 5.1 34 176-209 197-231 (624)
429 3sr0_A Adenylate kinase; phosp 79.0 1.4 4.9E-05 40.1 3.8 23 175-198 2-24 (206)
430 1o5z_A Folylpolyglutamate synt 78.8 2 6.7E-05 44.2 5.2 34 172-208 51-84 (442)
431 1sxj_A Activator 1 95 kDa subu 78.7 1.6 5.6E-05 45.7 4.7 34 174-211 78-111 (516)
432 2vos_A Folylpolyglutamate synt 78.6 2.3 7.9E-05 44.3 5.7 34 172-208 63-96 (487)
433 3nwj_A ATSK2; P loop, shikimat 78.5 1.3 4.4E-05 41.8 3.4 34 173-212 48-81 (250)
434 3ney_A 55 kDa erythrocyte memb 78.5 1.4 4.8E-05 40.0 3.5 30 168-198 13-43 (197)
435 1ye8_A Protein THEP1, hypothet 78.4 1.6 5.4E-05 38.8 3.8 24 175-199 2-25 (178)
436 1um8_A ATP-dependent CLP prote 78.4 1.8 6.1E-05 43.2 4.7 35 174-212 73-107 (376)
437 1vt4_I APAF-1 related killer D 78.2 2 6.8E-05 48.9 5.3 39 173-212 150-191 (1221)
438 3b9p_A CG5977-PA, isoform A; A 78.1 2.6 8.8E-05 40.3 5.5 34 173-210 54-87 (297)
439 4i1u_A Dephospho-COA kinase; s 78.0 1.7 5.9E-05 39.8 4.0 33 173-212 9-41 (210)
440 3d8b_A Fidgetin-like protein 1 77.6 2.4 8.4E-05 42.0 5.4 35 173-211 117-151 (357)
441 2f7s_A C25KG, RAS-related prot 77.5 8.1 0.00028 34.5 8.6 87 280-371 83-174 (217)
442 2qmh_A HPR kinase/phosphorylas 77.3 1.5 5.1E-05 39.9 3.3 32 173-211 34-65 (205)
443 3e2i_A Thymidine kinase; Zn-bi 77.1 2.8 9.5E-05 38.6 5.1 37 173-210 28-64 (219)
444 3tqf_A HPR(Ser) kinase; transf 77.1 2.2 7.4E-05 37.9 4.2 27 173-204 16-42 (181)
445 3h4m_A Proteasome-activating n 77.1 2.4 8.4E-05 40.1 5.0 34 174-211 52-85 (285)
446 1q3t_A Cytidylate kinase; nucl 76.9 1.9 6.6E-05 39.8 4.1 34 173-212 16-49 (236)
447 3dii_A Short-chain dehydrogena 76.7 1.8 6.2E-05 40.3 3.9 36 172-212 1-36 (247)
448 2wjy_A Regulator of nonsense t 76.6 2.2 7.5E-05 47.4 5.1 33 176-208 373-406 (800)
449 1e9r_A Conjugal transfer prote 76.6 2.4 8.2E-05 43.2 5.1 35 176-211 56-90 (437)
450 3lk7_A UDP-N-acetylmuramoylala 76.6 2.7 9.2E-05 43.2 5.5 31 174-207 113-143 (451)
451 3te6_A Regulatory protein SIR3 76.6 2.7 9.3E-05 41.1 5.2 27 174-201 46-72 (318)
452 1xwi_A SKD1 protein; VPS4B, AA 76.3 3.1 0.0001 40.7 5.6 34 174-210 46-79 (322)
453 3a00_A Guanylate kinase, GMP k 76.3 1.3 4.3E-05 39.4 2.5 31 174-205 2-33 (186)
454 1dek_A Deoxynucleoside monopho 75.9 1.8 6.1E-05 40.6 3.6 29 173-205 1-29 (241)
455 2ehd_A Oxidoreductase, oxidore 75.6 1.8 6.2E-05 39.7 3.5 37 171-212 3-39 (234)
456 2vp4_A Deoxynucleoside kinase; 75.6 1.8 6.1E-05 40.0 3.5 35 172-211 19-53 (230)
457 2ocp_A DGK, deoxyguanosine kin 75.5 1.5 5.3E-05 40.6 3.0 26 173-199 2-27 (241)
458 3guy_A Short-chain dehydrogena 75.5 1.7 5.8E-05 39.9 3.3 35 173-212 1-35 (230)
459 3hdt_A Putative kinase; struct 75.3 2.1 7.3E-05 39.5 3.9 33 174-212 15-47 (223)
460 3sfz_A APAF-1, apoptotic pepti 75.3 1.9 6.6E-05 49.8 4.4 41 171-212 145-189 (1249)
461 2fna_A Conserved hypothetical 75.2 2.7 9.3E-05 40.9 4.9 35 174-212 31-65 (357)
462 2h92_A Cytidylate kinase; ross 75.2 1.1 3.9E-05 40.7 2.0 32 175-212 5-36 (219)
463 3hws_A ATP-dependent CLP prote 74.9 2.6 9E-05 41.7 4.8 34 174-211 52-85 (363)
464 2npi_A Protein CLP1; CLP1-PCF1 74.9 1.4 4.9E-05 45.5 2.8 41 173-214 138-179 (460)
465 1lvg_A Guanylate kinase, GMP k 74.9 1.8 6.2E-05 39.0 3.2 25 174-199 5-29 (198)
466 3r6d_A NAD-dependent epimerase 74.8 2.5 8.4E-05 38.4 4.2 38 171-213 3-41 (221)
467 1tue_A Replication protein E1; 74.4 1.9 6.6E-05 39.4 3.3 23 175-198 60-82 (212)
468 3cf0_A Transitional endoplasmi 74.3 2.5 8.7E-05 40.7 4.4 32 174-209 50-81 (301)
469 3eph_A TRNA isopentenyltransfe 74.0 3.2 0.00011 42.0 5.0 33 174-212 3-35 (409)
470 1fjh_A 3alpha-hydroxysteroid d 73.9 2.5 8.6E-05 39.3 4.1 35 173-212 1-35 (257)
471 3eie_A Vacuolar protein sortin 73.8 4.3 0.00015 39.5 5.9 33 174-210 52-84 (322)
472 2ekp_A 2-deoxy-D-gluconate 3-d 73.8 2.5 8.4E-05 39.1 4.0 35 173-212 2-36 (239)
473 1xzp_A Probable tRNA modificat 73.7 10 0.00034 39.3 9.0 64 279-346 289-362 (482)
474 3pxg_A Negative regulator of g 73.7 2.3 7.9E-05 44.0 4.1 24 176-200 204-227 (468)
475 3ic5_A Putative saccharopine d 73.5 2.8 9.5E-05 33.5 3.8 35 172-212 4-39 (118)
476 2x5o_A UDP-N-acetylmuramoylala 73.5 3.6 0.00012 42.1 5.4 33 173-208 104-136 (439)
477 3p19_A BFPVVD8, putative blue 73.4 2.6 8.8E-05 39.8 4.1 36 172-212 15-50 (266)
478 1ojl_A Transcriptional regulat 73.4 1.5 5.1E-05 42.6 2.4 36 176-212 28-63 (304)
479 3l6e_A Oxidoreductase, short-c 72.3 2.7 9.4E-05 38.8 3.9 35 173-212 3-37 (235)
480 3u61_B DNA polymerase accessor 72.0 2.8 9.6E-05 40.6 4.1 32 176-210 50-81 (324)
481 3zvl_A Bifunctional polynucleo 72.0 1.4 4.9E-05 44.8 2.0 34 173-212 258-291 (416)
482 1zmt_A Haloalcohol dehalogenas 71.9 2.2 7.5E-05 39.9 3.2 35 173-212 1-35 (254)
483 1htw_A HI0065; nucleotide-bind 71.8 2.7 9.3E-05 36.5 3.5 24 174-198 34-57 (158)
484 2xzl_A ATP-dependent helicase 71.8 3.2 0.00011 46.1 4.8 34 176-209 377-411 (802)
485 1p9r_A General secretion pathw 71.6 4.1 0.00014 41.4 5.3 39 172-211 166-204 (418)
486 2pt7_A CAG-ALFA; ATPase, prote 71.3 10 0.00035 37.1 8.0 35 173-209 171-205 (330)
487 3hn7_A UDP-N-acetylmuramate-L- 71.1 3.9 0.00013 43.0 5.2 33 173-208 122-154 (524)
488 1xhj_A Nitrogen fixation prote 71.1 10 0.00036 29.3 6.2 71 74-150 6-78 (88)
489 2cfc_A 2-(R)-hydroxypropyl-COM 70.9 3 0.0001 38.5 3.9 35 173-212 2-36 (250)
490 1p5z_B DCK, deoxycytidine kina 70.9 1 3.6E-05 42.5 0.6 27 171-198 22-48 (263)
491 2v9p_A Replication protein E1; 70.7 3.4 0.00012 40.1 4.3 29 173-205 126-154 (305)
492 1geg_A Acetoin reductase; SDR 70.7 3 0.0001 39.0 3.8 36 172-212 1-36 (256)
493 3qiv_A Short-chain dehydrogena 70.7 3.4 0.00011 38.4 4.1 36 172-212 8-43 (253)
494 1r5b_A Eukaryotic peptide chai 70.5 3.8 0.00013 42.3 4.9 68 279-346 119-193 (467)
495 2qp9_X Vacuolar protein sortin 70.4 4.5 0.00015 40.1 5.2 32 175-210 86-117 (355)
496 3pxi_A Negative regulator of g 70.4 4.2 0.00014 44.7 5.5 39 175-214 523-561 (758)
497 1znw_A Guanylate kinase, GMP k 70.2 2.8 9.4E-05 37.9 3.3 26 173-199 20-45 (207)
498 4gp7_A Metallophosphoesterase; 70.2 2.4 8.2E-05 37.1 2.8 19 174-193 10-28 (171)
499 1sxj_C Activator 1 40 kDa subu 70.1 2.3 7.7E-05 41.8 2.9 36 176-212 49-84 (340)
500 1j6u_A UDP-N-acetylmuramate-al 70.1 3.9 0.00013 42.2 4.9 32 173-207 114-145 (469)
No 1
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=4.1e-32 Score=271.91 Aligned_cols=232 Identities=18% Similarity=0.160 Sum_probs=174.9
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-cc----cc-----CCCCCceeee
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL----EM-----NPEKRTIIPT 240 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~-~~----~~-----~~~~~~i~~~ 240 (516)
..+|||||+ |||||||||+|+|||.+||+.|+||++||+|||++++..+++.... .. .. ....+.+...
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 356899998 7999999999999999999999999999999999877655432211 00 00 0011123344
Q ss_pred ccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 010156 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 320 (516)
...++.+++++....... +........+..+.+...++.||||++|||++.....+. ..+.++|.+++|++|+..++.
T Consensus 125 ~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~ 202 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIY 202 (314)
T ss_dssp CGGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHH
T ss_pred cCCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHH
Confidence 556899999775443322 223334445555555445589999999999987655442 335678999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeC
Q 010156 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (516)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~ 396 (516)
++.++++.++.. +.++.|+|+|++.. ....+++.++++.++++.||++..+++|...|+|+++++
T Consensus 203 ~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~ 271 (314)
T 3fwy_A 203 AMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMD 271 (314)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCc-----------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEEC
Confidence 999888877653 45678999998432 235788999999999999999999999999999999999
Q ss_pred CCCHHHHH---HHHHHHHHHHHH
Q 010156 397 PCGEVANT---FQDLGVCVVQQC 416 (516)
Q Consensus 397 p~s~~~~~---~~~La~~i~~~~ 416 (516)
|+|+.+++ |++||++|+++.
T Consensus 272 P~S~~a~aa~~Y~~LA~eil~~~ 294 (314)
T 3fwy_A 272 EDQDVLAARAEYIRLAESLWRGL 294 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChhhHHHHHHHHHHHHHHhCC
Confidence 99987666 999999998654
No 2
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.98 E-value=4.7e-32 Score=261.17 Aligned_cols=229 Identities=20% Similarity=0.287 Sum_probs=181.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---c----cccCCCCCceeeeccCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---L----LEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~---~----~~~~~~~~~i~~~~~~~ 244 (516)
|+++|+|+|+|||+||||+|+|||.+||++|+||++||+|++.++++.+++.+.. + .......+.+.+...++
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 5789999999999999999999999999999999999999988888888776543 1 11112223444444589
Q ss_pred ceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
++++|..... ....+.. ...+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..++..+.+
T Consensus 81 l~~lp~~~~~-~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDW-EHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSH-HHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCcc-chhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 9999943221 1111110 123556666655 789999999999988654443 56789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHH
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 404 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~ 404 (516)
+++.+++.+.+.+|+|+|++...... ...+++.+.+|.++++.||++..+.++...|+|+.++.|+++++++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 225 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKA 225 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHH
Confidence 99999988888999999997543221 3467888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 010156 405 FQDLGVCVVQQ 415 (516)
Q Consensus 405 ~~~La~~i~~~ 415 (516)
|.+|+++|.++
T Consensus 226 ~~~la~~l~~~ 236 (237)
T 1g3q_A 226 FVKLAEEIEKL 236 (237)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 3
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.98 E-value=1.8e-32 Score=265.42 Aligned_cols=228 Identities=17% Similarity=0.236 Sum_probs=177.2
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCC-Cccc--ccc----cCCCC----Ccee
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PENR--LLE----MNPEK----RTII 238 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~~~~~~~l~-~~~~--~~~----~~~~~----~~i~ 238 (516)
+++++|+|+|+|||+||||+|+|||.+||++ |+||++||+|++.+++..+++ .... +.. ..... +.+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 4689999999999999999999999999998 999999999999778888774 2221 110 00001 1233
Q ss_pred eeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 010156 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (516)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s 318 (516)
....+|++++|++........+. ...++++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 44568999999765433322222 234555655554 689999999999987655444 55789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCCh-hHhhcccCCCceEEe
Q 010156 319 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 395 (516)
Q Consensus 319 ~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~-~i~~a~~~g~pl~~~ 395 (516)
+..+.++++.+++.+ ...+|+|+||+..... ...+++.+.+|.+++..||++. .+.++...|+|+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~ 225 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKV 225 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCcccc
Confidence 999999999999877 5679999999754321 1247888899999999999996 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQ 414 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~ 414 (516)
.|+++++++|++|+++|.+
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 4
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.97 E-value=1e-31 Score=262.38 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=178.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------cccCCCCCceee-ecc
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP-TEY 242 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~--------~~~~~~~~~i~~-~~~ 242 (516)
|+++|+|+|+|||+||||+|+|||.+||++|+||++||+|++.+++..+++.+... .......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 57899999999999999999999999999999999999999888888888875431 011111222333 245
Q ss_pred CCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccC-CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
+|++++|++.... ...+. ...+.++++.+. . .||||||||||+.+...... +..+|.+++|+.|+..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999875432 12222 234555555554 5 89999999999988654443 55789999999999999999
Q ss_pred HHHHHHHHHcCCC--------CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceE
Q 010156 322 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 393 (516)
Q Consensus 322 ~~~~~~~l~~~~~--------~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~ 393 (516)
+.++++.++..+. ..+++|+|++........ .....+++.+.+|.++++.||++..+.++...|+|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~ 228 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT----SSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCccccccc----cccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeE
Confidence 9999999987652 478999999764321100 0012578889999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 010156 394 AADPCGEVANTFQDLGVCVVQ 414 (516)
Q Consensus 394 ~~~p~s~~~~~~~~La~~i~~ 414 (516)
+ .|+++++++|.+|+++|.+
T Consensus 229 ~-~~~s~~~~~~~~la~~l~~ 248 (260)
T 3q9l_A 229 L-DINADAGKAYADTVERLLG 248 (260)
T ss_dssp G-CTTCHHHHHHHHHHHHHTT
T ss_pred E-CCCCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999875
No 5
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.97 E-value=1.1e-30 Score=255.98 Aligned_cols=227 Identities=39% Similarity=0.630 Sum_probs=174.8
Q ss_pred cccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeee--ccC
Q 010156 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYL 243 (516)
Q Consensus 166 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~--~~~ 243 (516)
.+++++++++|+|+|+||||||||+|+|||.+||++|+||++||+|++++++..+++....... .....+.+. ..+
T Consensus 11 a~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~ 88 (262)
T 2ph1_A 11 KERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKY 88 (262)
T ss_dssp HHHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTT
T ss_pred hhhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCC
Confidence 3567788999999999999999999999999999999999999999999888777776533110 011222222 457
Q ss_pred CceEEcCCCCCCcc---cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 010156 244 GVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 244 ~l~vl~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 320 (516)
|++++|++...... ..+.++.....++++++.+.++.||||||||||+.++..........+|.+++|+.|+..++.
T Consensus 89 ~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 168 (262)
T 2ph1_A 89 GIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAV 168 (262)
T ss_dssp CCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHH
T ss_pred CeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHH
Confidence 89999976533221 122344456678888877655789999999999998755544434468999999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEE
Q 010156 321 DVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (516)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~ 394 (516)
.+.+.++.+++.+.+++|+|+|+++.... ......+.....+++.+.+|.++++.||++..+.+|...|+|+..
T Consensus 169 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 169 IVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp HHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 99999999999899999999999764221 111112234568899999999999999999999999999999854
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.97 E-value=3e-31 Score=259.81 Aligned_cols=228 Identities=23% Similarity=0.273 Sum_probs=177.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeeeccCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 244 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~---~~----~~~~~~~~i~~~~~~~ 244 (516)
|+++|+|+|+||||||||+|+|||.+|+++|+||++||+|++.++++.+++.+.. +. ......+.+.+. .+|
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~-~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVG-PGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEEC-GGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeC-CCC
Confidence 5789999999999999999999999999999999999999988888887776543 11 111222333333 478
Q ss_pred ceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 010156 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (516)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (516)
++++|............ ...+.++++.+. ..||||||||||+.+...... +..+|.+++|+.++..++.++.+
T Consensus 80 l~~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLRKAN----PEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHHHHC----HHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhhccC----hHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999432211111110 234555555554 789999999999988554443 45789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHH
Q 010156 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 404 (516)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~ 404 (516)
+++.+++.+.+.+|+|+|++...... ...+++.+.+|.++++.||++..+.+|...|+|+.++.|+++++++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 224 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARA 224 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHH
Confidence 99999888888999999996532210 3467788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 010156 405 FQDLGVCVVQQ 415 (516)
Q Consensus 405 ~~~La~~i~~~ 415 (516)
|.+|+++|.++
T Consensus 225 ~~~la~~l~~~ 235 (263)
T 1hyq_A 225 IVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 7
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.97 E-value=3.5e-31 Score=258.79 Aligned_cols=231 Identities=20% Similarity=0.284 Sum_probs=172.0
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---ccCCCCCceeeeccCCc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIPTEYLGV 245 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~---~~~~~~~~i~~~~~~~l 245 (516)
..+++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +..+++.... +. ......+.+.+ .+|+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN-ATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC-HHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 457899999999999999999999999999999999999999864 5555655431 10 01122233333 5799
Q ss_pred eEEcCCCCCCcc--cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 246 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 246 ~vl~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
+++|++...... ...... ..+.++++. ..||||||||||+.+...... +..+|.+++|+.|+..++..+.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999976432211 111110 234454433 689999999999988654443 4578999999999999999888
Q ss_pred HHHHHHHc------CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCCChhHhhcccCCCceEEeC
Q 010156 324 KGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAAD 396 (516)
Q Consensus 324 ~~~~~l~~------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pl~~~~ 396 (516)
++++.+++ .+.+++|+|+|++..... ..++..+.+.+.+|.+++ ..||++..+.+|...|+|+.++.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~------~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~ 226 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRTL------LAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA 226 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTCS------HHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCcH------HHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhC
Confidence 88777764 256678999999653321 123456777888888765 78999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 010156 397 PCGEVANTFQDLGVCVVQQCAK 418 (516)
Q Consensus 397 p~s~~~~~~~~La~~i~~~~~~ 418 (516)
|+++++++|.+|+++|.+++..
T Consensus 227 ~~~~~~~~~~~la~~l~~~~~~ 248 (257)
T 1wcv_1 227 PTSPGAHAYRRLAEEVMARVQE 248 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999877644
No 8
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.97 E-value=3e-30 Score=242.85 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=160.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
||+|+|+|+|||+||||+|+|||..|+++|+||++||+|+|++...++.. ...++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~------------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA------------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT------------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc------------------CCCCCcEEecCc
Confidence 68999999999999999999999999999999999999998865433211 123477777542
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (516)
..+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 33455555554 689999999999997655444 45689999999999999 9999999999876
Q ss_pred C-----CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCCChhHhhcccCCCceEEeCCCCHHHHHHH
Q 010156 333 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 406 (516)
Q Consensus 333 ~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~ 406 (516)
+ .++ ++|+||++..... .....+..+.+|.+++ ..||++..+.++...|+|+.+ .|+++++++|.
T Consensus 125 ~~~~~~~~~-~vv~N~~~~~~~~-------~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~~~ 195 (206)
T 4dzz_A 125 QAYSRKVEA-RFLITRKIEMATM-------LNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGEIE 195 (206)
T ss_dssp SCGGGCCEE-EEEECSBCTTEEE-------EHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHHHH
T ss_pred HHhCCCCcE-EEEEeccCCCchH-------HHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHHHH
Confidence 4 344 9999997643211 1235566667898888 889999999999999999999 99999999999
Q ss_pred HHHHHHHHHH
Q 010156 407 DLGVCVVQQC 416 (516)
Q Consensus 407 ~La~~i~~~~ 416 (516)
+|+++|.+++
T Consensus 196 ~la~~i~~~l 205 (206)
T 4dzz_A 196 ILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 9
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.97 E-value=5.8e-30 Score=251.39 Aligned_cols=230 Identities=18% Similarity=0.092 Sum_probs=155.1
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc---------cc----ccccCCCCCc
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKRT 236 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~---------~~----~~~~~~~~~~ 236 (516)
.+++++|+|+|+||||||||+|+|||.+|| +|+||++||+|++++...++++.. .. +.......+.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 102 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDST 102 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGG
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHh
Confidence 456899999999999999999999999999 999999999999986655542211 01 1111222334
Q ss_pred eeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 010156 237 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~ 316 (516)
+... .+|++++|++.................+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+.
T Consensus 103 i~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 103 IINV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAEK 178 (267)
T ss_dssp CEEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESCT
T ss_pred hccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCCh
Confidence 4444 489999998754332221111112345677777665 789999999999998665544 557899999999999
Q ss_pred chHHHHHHHHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEe
Q 010156 317 LAFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (516)
Q Consensus 317 ~s~~~~~~~~~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~ 395 (516)
.++..+.++++.+++.+.. .+++|+||+.... ..++..+.+.+ +.++++.||+++.+.++...|+|+..
T Consensus 179 ~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-------~~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~- 248 (267)
T 3k9g_A 179 WAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-------THKTLFEILKT--KDRFLGTISEREDLNRRIAENNNFDL- 248 (267)
T ss_dssp THHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-------SCCHHHHHHTT--STTEEEEEEC-----------------
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-------hHHHHHHHHhc--CcccceecCcHHHHHHHHHhcCCcch-
Confidence 9999999999999988543 3579999973211 12233444443 78899999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 010156 396 DPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 396 ~p~s~~~~~~~~La~~i~~~~ 416 (516)
.+++.++|++++++|.+++
T Consensus 249 --~~~~~~~~~~i~~~l~~~l 267 (267)
T 3k9g_A 249 --NKDYIKEYENILEIFLKKI 267 (267)
T ss_dssp --CCHHHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHHHHhhC
Confidence 5789999999999998763
No 10
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.97 E-value=1.3e-29 Score=254.12 Aligned_cols=230 Identities=18% Similarity=0.140 Sum_probs=170.9
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--c----cc------cCCCCCce
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LE------MNPEKRTI 237 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~----~~------~~~~~~~i 237 (516)
...+++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++....+ +.... + .. .....+.+
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l-~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTL-TGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHH-HTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHh-CccCCCCHHHHHhhccccccCCCHHHhh
Confidence 3467899999 8999999999999999999999999999999998655433 32211 1 00 11112223
Q ss_pred eeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHh-cccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 010156 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 238 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~ 316 (516)
.+ ..+|++++|++........ ... .......+++. ..++.||||||||||+.+.... ...+..+|.+++|+.|+.
T Consensus 116 ~~-~~~~l~vlp~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 116 FE-GFNGVMCVEAGGPPAGTGC-GGY-VVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp EE-CGGGCEEEECCCCCSSSSC-TTH-HHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSH
T ss_pred cc-CCCCceEEECCCccccccc-chh-hhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcH
Confidence 33 5679999997754332211 111 11122233332 1237899999999998764322 122567899999999999
Q ss_pred chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCce
Q 010156 317 LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 392 (516)
Q Consensus 317 ~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl 392 (516)
.++..+.++++.+++ .+.+++|+|+||+.. +...+++.+.+|.++++.||++..+.+|...|+|+
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----------~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v 260 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTL 260 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----------HHHHHHHHHHcCCCceeeCCccHHHHHHHHcCCCe
Confidence 999999999999986 356789999999652 13578888999999999999999999999999999
Q ss_pred EEeCCC---CHHHHHHHHHHHHHHHHH
Q 010156 393 VAADPC---GEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 393 ~~~~p~---s~~~~~~~~La~~i~~~~ 416 (516)
.++.|+ ++++++|.+|+++|.++.
T Consensus 261 ~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 261 FEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 999999 899999999999998643
No 11
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.96 E-value=3.1e-30 Score=253.47 Aligned_cols=232 Identities=19% Similarity=0.162 Sum_probs=168.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------cccc---CCCCCceeeeccC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM---NPEKRTIIPTEYL 243 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~---~~~~~~i~~~~~~ 243 (516)
|++|+| ++||||||||+|+|||.+||++|+||++||+|+|++++.++++.... +... ....+.+ ....+
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i-~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSIL-KEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHC-EECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhh-ccCCC
Confidence 589999 68999999999999999999999999999999999888777654322 1010 1111222 34567
Q ss_pred CceEEcCCCCCCcccccCCccHH--HHHHHHHHhcccCCCCEEEEcCCCCCChhhhhh-hhhcCCCeEEEEeCCCcchHH
Q 010156 244 GVKLVSFGFSGQGRAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFI 320 (516)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~-~~~~~~d~viiV~~p~~~s~~ 320 (516)
|++++|++.......... .... ..+.+.+..+ .++||||||||||+.....+.. .....+|.+++|+.|+..++.
T Consensus 79 ~l~vl~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 79 GIRCVESGGPEPGVGCAG-RGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp GCEEEECCCCCTTSSCHH-HHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHH
T ss_pred CeeEEeCCCchhhccccC-cchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHH
Confidence 999999775432211100 0000 0111222222 2679999999998764322211 111358999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeC
Q 010156 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (516)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~ 396 (516)
.+.++++.+++. +.+++|+|+|+++.. ..+...+++.+.+|.++++.||++..+.+|...|+|+.++.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~ 228 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVA--------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYD 228 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEEC
Confidence 998888877653 566789999996421 12356778888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 010156 397 PCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 397 p~s~~~~~~~~La~~i~~~~ 416 (516)
|+++++++|.+|+++|.++.
T Consensus 229 ~~s~~~~~~~~l~~~l~~~~ 248 (269)
T 1cp2_A 229 PTCEQAEEYRELARKVDANE 248 (269)
T ss_dssp TTSHHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHhcc
Confidence 99999999999999997653
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.96 E-value=5.4e-30 Score=254.66 Aligned_cols=230 Identities=21% Similarity=0.195 Sum_probs=167.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--c---cccC-----CCCCceeeecc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN-----PEKRTIIPTEY 242 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~---~~~~-----~~~~~i~~~~~ 242 (516)
|++|+| ++||||||||+|+|||.+||++|+||++||+|+|++++.++++.... + .... ...+.+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 689999 68999999999999999999999999999999999888777654321 1 1110 01111223446
Q ss_pred CCceEEcCCCCCCcccccCCccHHHH--HHHHHHhcc--cCCCCEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcc
Q 010156 243 LGVKLVSFGFSGQGRAIMRGPMVSGV--INQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKL 317 (516)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~--l~~l~~~~~--~~~yD~VIID~pp~~~~~~~~-~~~~~~~d~viiV~~p~~~ 317 (516)
+|++++|++....... ...... ..++++.+. .+.||||||||||......+. ......+|.+++|++|+..
T Consensus 81 ~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 81 GGVKCVESGGPEPGVG----CAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GGCEEEECCCCCTTTC----CHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHH
T ss_pred CCeEEEeCCCcccccc----ccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHH
Confidence 7999999775432211 111111 112333321 268999999999865422111 1112368999999999999
Q ss_pred hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceE
Q 010156 318 AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 393 (516)
Q Consensus 318 s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~ 393 (516)
++..+.++++.+++ .+.+++|+|+|++... ..++..+++.+.+|.+++..||++..+.+|...|+|+.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~ 228 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--------REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVI 228 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--------THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--------hHHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCce
Confidence 99999888877764 3677889999996421 12245778888899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHHH
Q 010156 394 AADPCGEVANTFQDLGVCVVQQ 415 (516)
Q Consensus 394 ~~~p~s~~~~~~~~La~~i~~~ 415 (516)
++.|+++++++|.+|+++|.++
T Consensus 229 ~~~~~s~~~~~~~~la~~l~~~ 250 (289)
T 2afh_E 229 EYDPKAKQADEYRALARKVVDN 250 (289)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHC
T ss_pred eeCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.96 E-value=1.6e-29 Score=245.11 Aligned_cols=224 Identities=14% Similarity=0.072 Sum_probs=167.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc----cCCCC---------Cce----
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE----MNPEK---------RTI---- 237 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~----~~~~~---------~~i---- 237 (516)
+|+| |+||||||||+|+|||..||++|+||++||+|+| +++..+++....... ..... ..+
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 8999999999999999999999999999999998 688888876533110 00000 000
Q ss_pred -----e----eeccCCceE-EcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 010156 238 -----I----PTEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (516)
Q Consensus 238 -----~----~~~~~~l~v-l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~ 307 (516)
. .....++++ ++.+........... .....+.++++.+.++.||||||||||+.+...... +..+|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYC-RENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCH-HHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCCc-chHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0 012346666 665532221111100 111346666666522899999999999988644433 568899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhC-CCeEEecCCChhHhhcc
Q 010156 308 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTLSASG 386 (516)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~l~~IP~~~~i~~a~ 386 (516)
+++|+.|+..++..+.++.+.+.+.+.+.+++|+|++... ...+++.+.++ .++.+.||++..+.++.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~ 225 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIELS 225 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSCS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 9999999999999999999999988888899999996521 24677888887 77889999999999999
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHH
Q 010156 387 DSGMPEVAADPCGEVANTFQDLGVCVVQQC 416 (516)
Q Consensus 387 ~~g~pl~~~~p~s~~~~~~~~La~~i~~~~ 416 (516)
..|+|+.++.| +++++|++|+++|.++.
T Consensus 226 ~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 226 LKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp SSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred hCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999998876 69999999999998764
No 14
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.96 E-value=5.5e-29 Score=248.39 Aligned_cols=238 Identities=14% Similarity=0.147 Sum_probs=174.1
Q ss_pred cceEEEEEe--CCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC---CCCCCccc---cc---ccCCCCCceeee
Q 010156 172 ISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP---TMVSPENR---LL---EMNPEKRTIIPT 240 (516)
Q Consensus 172 ~~kvI~v~s--~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~---~~l~~~~~---~~---~~~~~~~~i~~~ 240 (516)
+.++|+|+| +||||||||+|+|||..||++|+||++||+|+|++... ..++.+.. +. ......+.+...
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 112 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHL 112 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEES
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhccc
Confidence 457899998 89999999999999999999999999999999986432 22333211 10 011122333333
Q ss_pred ccCCceEEcCCCCCCcccccCC----ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 010156 241 EYLGVKLVSFGFSGQGRAIMRG----PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~~~~----~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~ 316 (516)
.+|++++|++........+.. ......+.++++.+. +.||||||||||+.+...... +.++|.+++|+.|+.
T Consensus 113 -~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~ 188 (298)
T 2oze_A 113 -TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAEE 188 (298)
T ss_dssp -SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGGG
T ss_pred -CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCcH
Confidence 479999997753322111110 112345777777765 789999999999998755444 456899999999999
Q ss_pred chHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCC--CeE-EecCCChhHhhccc
Q 010156 317 LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTLSASGD 387 (516)
Q Consensus 317 ~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~l-~~IP~~~~i~~a~~ 387 (516)
.++..+.++++.+++ .+.+++|+|+||++.... ..+...+++.+.++. +++ ..||++..+.+|..
T Consensus 189 ~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~~ 262 (298)
T 2oze_A 189 ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA------TIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSK 262 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH------HHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH------HHHHHHHHHHHHhccccccccccccccHHHHHHHH
Confidence 999999998888875 367789999999654321 122457788888885 444 57999999999999
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Q 010156 388 SGMPEVAADPCGEVANTFQDLGVCVVQQCAKIR 420 (516)
Q Consensus 388 ~g~pl~~~~p~s~~~~~~~~La~~i~~~~~~~~ 420 (516)
.|+|+++ ..+++++++|.+|+++|.+++.+..
T Consensus 263 ~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~ 294 (298)
T 2oze_A 263 NGITEHK-GYDKKVLSMYKNVFFEMLERIIQLE 294 (298)
T ss_dssp HCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhh-hcChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999886 2344689999999999999887654
No 15
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.96 E-value=2.7e-29 Score=261.31 Aligned_cols=242 Identities=18% Similarity=0.201 Sum_probs=139.8
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHH------HCCCcEEEEEcCCCCCCCCCCCCCccccc-----------c---
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E--- 229 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La------~~G~rVllID~D~~~~~~~~~l~~~~~~~-----------~--- 229 (516)
.+++++|+|+|+||||||||+|+|||.+|| +.|+||++||+|+++ +++.+|+...... .
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 186 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD 186 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence 356899999999999999999999999999 679999999999987 6777777654210 0
Q ss_pred -cCCCCCceeeeccCCceEEcCCCCCCcc---------cccCCc-cHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh
Q 010156 230 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 298 (516)
Q Consensus 230 -~~~~~~~i~~~~~~~l~vl~~~~~~~~~---------~~~~~~-~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~ 298 (516)
.....+.+.+...+|++++|++...... ..+.+. ....+++++++.+. +.||||||||||+++.....
T Consensus 187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~ 265 (403)
T 3ez9_A 187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLN 265 (403)
T ss_dssp HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHH
T ss_pred ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHH
Confidence 0012345666677899999987542100 001111 11234456666654 78999999999999866554
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHH-------HHHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 010156 299 LCQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 369 (516)
Q Consensus 299 ~~~~~~~d~viiV~~p~~~s~~~~~~-------~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (516)
. +..+|.+++|++|+..++..+.+ +++.+++. +.++.|++.++....... ..+...+.+.+.+|
T Consensus 266 a--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~-----~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 266 G--LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR-----DHETSHSLAREVYA 338 (403)
T ss_dssp H--HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH-----HHHHHHHHHHHHHT
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch-----hHHHHHHHHHHHhh
Confidence 4 55789999999999887665444 34444443 445556655543333210 11234577788899
Q ss_pred CCeE-EecCCChhHhhcccCCCceEEeCCC---------CHHHHHHHHHHHHHHHHHHHhh
Q 010156 370 IPHL-FDLPIRPTLSASGDSGMPEVAADPC---------GEVANTFQDLGVCVVQQCAKIR 420 (516)
Q Consensus 370 ~~~l-~~IP~~~~i~~a~~~g~pl~~~~p~---------s~~~~~~~~La~~i~~~~~~~~ 420 (516)
.+++ +.||++..+.++...|+|++++.|+ ..+.+.|.+++++|.+++..++
T Consensus 339 ~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~~ 399 (403)
T 3ez9_A 339 SNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVR 399 (403)
T ss_dssp TSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888 7899999999999999999999875 3566789999999998888775
No 16
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.96 E-value=1.2e-29 Score=263.59 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=173.3
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCCCCCCCCCCCCCcccc-----------cc---
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRL-----------LE--- 229 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~~~~~~~~~l~~~~~~-----------~~--- 229 (516)
.+++++|+|+|+||||||||+|+|||.+||+ .|+||++||+|+|+ +++.+++..... ..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 183 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVS 183 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhcc
Confidence 3568999999999999999999999999994 69999999999986 566666654310 00
Q ss_pred -cCCCCCceeeeccCCceEEcCCCCCCcc---------ccc-CCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh
Q 010156 230 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 298 (516)
Q Consensus 230 -~~~~~~~i~~~~~~~l~vl~~~~~~~~~---------~~~-~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~ 298 (516)
.....+.+.+...+|++++|++...... ..+ ........++++++.+. ++||||||||||+++.....
T Consensus 184 ~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~ 262 (398)
T 3ez2_A 184 REELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKN 262 (398)
T ss_dssp HHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHH
T ss_pred ccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHH
Confidence 0011234566667899999987542100 000 11111234455565554 79999999999999876655
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHHH-------HHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 010156 299 LCQVVPLTAAVIVTTPQKLAFIDVAKG-------VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 369 (516)
Q Consensus 299 ~~~~~~~d~viiV~~p~~~s~~~~~~~-------~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (516)
. +.++|.+++|+.|+..++..+.+. ++.+++. +.++.|+|.|+....... ..+...+++.+.+|
T Consensus 263 ~--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 263 A--LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVFG 335 (398)
T ss_dssp H--HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHHG
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHhc
Confidence 4 557899999999998876654443 3344443 455667777775544321 12245677888899
Q ss_pred CCeE-EecCCChhHhhcccCCCceEEeCCCC---------HHHHHHHHHHHHHHHHHHHhh
Q 010156 370 IPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIR 420 (516)
Q Consensus 370 ~~~l-~~IP~~~~i~~a~~~g~pl~~~~p~s---------~~~~~~~~La~~i~~~~~~~~ 420 (516)
.+++ ..||++..+.++...|+|++++.|++ .+.+.|.+++++|.+++..++
T Consensus 336 ~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~~ 396 (398)
T 3ez2_A 336 GDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIR 396 (398)
T ss_dssp GGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877 78999999999999999999998863 567789999999988887765
No 17
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.7e-28 Score=251.39 Aligned_cols=244 Identities=17% Similarity=0.123 Sum_probs=147.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc---------------------cccc--
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLE-- 229 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~---------------------~~~~-- 229 (516)
||+|+|+|+||||||||+|+|||..||+.|+|||+||+|+|++.+..+++.+. .+..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999987777665321 1111
Q ss_pred ------cCCCCC--ceeeeccCCceEEcCCCCCCcccccC---------Ccc----HHHHHHHHHHhcc-cCCCCEEEEc
Q 010156 230 ------MNPEKR--TIIPTEYLGVKLVSFGFSGQGRAIMR---------GPM----VSGVINQLLTTTE-WGELDYLVID 287 (516)
Q Consensus 230 ------~~~~~~--~i~~~~~~~l~vl~~~~~~~~~~~~~---------~~~----~~~~l~~l~~~~~-~~~yD~VIID 287 (516)
.....+ .+.....+|++++|++.........- +.. ....++++++.+. +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 111122 24444567999999875433221110 000 0123555555554 2489999999
Q ss_pred CCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC----------------------------------
Q 010156 288 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK---------------------------------- 333 (516)
Q Consensus 288 ~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~---------------------------------- 333 (516)
|||+++.....+ +.++|.+++|+.|+..++.++.++++.+++.+
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999998665544 56799999999999999999998888776541
Q ss_pred ---CCEEEEEEecccccCCCc--cccccCCchHHHHHHHh-----------CCCeEEecCCCh-hHhhcccCCCceEEeC
Q 010156 334 ---VPCIAVVENMCHFDADGK--RYYPFGRGSGSQVVQQF-----------GIPHLFDLPIRP-TLSASGDSGMPEVAAD 396 (516)
Q Consensus 334 ---~~~~gvV~N~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------g~~~l~~IP~~~-~i~~a~~~g~pl~~~~ 396 (516)
.+++|+|+|++....... ..........+++.+.. ....++.||... .+..|...|+|+++..
T Consensus 239 ~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l~ 318 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMELS 318 (361)
T ss_dssp SSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC--------------------
T ss_pred ccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEECc
Confidence 678999999965443111 00111222333444333 334578888765 5678999999999997
Q ss_pred CC-----------CHHHHHHHHHHHHHHHHHHH
Q 010156 397 PC-----------GEVANTFQDLGVCVVQQCAK 418 (516)
Q Consensus 397 p~-----------s~~~~~~~~La~~i~~~~~~ 418 (516)
+. ..+.+.|.+||..|.+++..
T Consensus 319 ~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~ 351 (361)
T 3pg5_A 319 SSDRVRGAQINQRNAYAEKINSVAANVYKALFP 351 (361)
T ss_dssp --------------CCHHHHHHHHHHHHHHHCC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 73 36778888888888877643
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.95 E-value=4.9e-28 Score=229.05 Aligned_cols=198 Identities=21% Similarity=0.250 Sum_probs=152.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (516)
|+|+|+|+||||||||+|+|||..|+++| ||++||+|+|++...+ ++. . + .+ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~-~~~-~---------~--l~-----~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGW-GKR-G---------S--LP-----FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHH-HHH-S---------C--CS-----SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHH-hcC-C---------C--CC-----cceeCHH--
Confidence 48999999999999999999999999999 9999999999754322 221 0 0 00 1445411
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCC-CChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 010156 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~-~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (516)
.++.+ . +.||||||||||+ .+...... +..+|.+++|+.|+..++..+.++++.+++.
T Consensus 60 --------------~l~~l----~-~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY----A-PKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH----G-GGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh----h-hcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 23333 2 7899999999999 77654443 5578999999999999999999999999885
Q ss_pred -CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EecCCChhHhhcccCCCceEEe-CCCC-HHHHHHHHH
Q 010156 333 -KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAA-DPCG-EVANTFQDL 408 (516)
Q Consensus 333 -~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pl~~~-~p~s-~~~~~~~~L 408 (516)
+.+ +++|+|++..... .. . ....+..+++|.+++ ..||++..+.+|...|+|+.++ .|++ +++++|.+|
T Consensus 119 ~~~~-~~vv~N~~~~~~~-~~----~-~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~~~l 191 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPS-KD----G-DEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDYKAT 191 (209)
T ss_dssp CSSS-EEEEECSBCCTTS-CH----H-HHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHHHHH
T ss_pred cCCC-EEEEEEecCCccc-hH----H-HHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHHHHH
Confidence 455 8899999754320 10 1 123334445888877 6899999999999999999999 9999 999999999
Q ss_pred HHHHHHHHHHhh
Q 010156 409 GVCVVQQCAKIR 420 (516)
Q Consensus 409 a~~i~~~~~~~~ 420 (516)
+++|.+++....
T Consensus 192 ~~el~~~~~~~~ 203 (209)
T 3cwq_A 192 GKEIVEEILTLE 203 (209)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHHHHhhh
Confidence 999998766543
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.94 E-value=3.6e-28 Score=241.21 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=154.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCc-eEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l-~vl~~ 250 (516)
|+++|+|+|+||||||||+|+|||..|+++|+||++||+|+..+++..+++....+.... . .....++ +++|.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~----~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--K----IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--T----CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--c----ccCCCchheEeeC
Confidence 678999999999999999999999999999999999999994456655555432211100 0 0112467 77775
Q ss_pred CC--CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 010156 251 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (516)
Q Consensus 251 ~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~ 328 (516)
+. ....... .....+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..++..+.++++.
T Consensus 77 ~~~~~~~~~~~----~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPEE----EQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCHH----HHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhhh----hhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 1111111 12234555555554 789999999999987654443 567899999999998887765544333
Q ss_pred -------------H---H-------cCC-CCEEEEEEecccccCCCccccccCCchHHHH---HHHhCCCeEEecCCChh
Q 010156 329 -------------F---S-------KLK-VPCIAVVENMCHFDADGKRYYPFGRGSGSQV---VQQFGIPHLFDLPIRPT 381 (516)
Q Consensus 329 -------------l---~-------~~~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~l~~IP~~~~ 381 (516)
+ + ..+ . .+++|+||++.... . ..++..+.+ .+.+|.++.+.||++..
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~vV~N~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~ 223 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAM-DWVVLRNRLATTEA-R----NRKRLEDRLNALAKRVGFRIGPGLRDRVI 223 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCC-EEEEEEECCTTCCG-G----GHHHHHHHHHHHHHHHCCEEEECCCCCHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCccc-cEEEEEeeecCCCc-c----hhHHHHHHHHHHHHHcCCccCCCCCchHH
Confidence 3 2 113 3 36799999754320 0 011222333 33488877788999999
Q ss_pred HhhcccCCCceEEeCC----------CCHHHHHHHHHHHHHH
Q 010156 382 LSASGDSGMPEVAADP----------CGEVANTFQDLGVCVV 413 (516)
Q Consensus 382 i~~a~~~g~pl~~~~p----------~s~~~~~~~~La~~i~ 413 (516)
+.+|...|+|+.++.| .++++++|++|+++|.
T Consensus 224 ~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 224 YRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 9999999999999998 8899999999999885
No 20
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=99.92 E-value=6.6e-26 Score=187.71 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=74.8
Q ss_pred cccceeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCC
Q 010156 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (516)
Q Consensus 423 ~~~~~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dg 502 (516)
.+..+.++...+.|.|.|+||.. +.|++.|||+|||||+|+++.|+||+ +..+|.+|.+.+++++|+|+|+|.|+||
T Consensus 8 ~P~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~c~ca~c~~~~t~qr~--l~~~~~~v~~~~i~~~g~yal~i~wsDG 84 (101)
T 3luu_A 8 QPLEIRPLMISRVMEVDWADGHT-SRLTFEHLRVECPCAECKGHTPDQAQ--IVTGKEHVSVVEVVPVGHYAVQLHFSDG 84 (101)
T ss_dssp CEEEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCCC----------C--CCCCCTTCCEEEEEEETTTEEEEEETTS
T ss_pred CCeEEEEeCCCCEEEEEeCCCCE-EEECHHHHHhhCCChhhcCccCCccc--cccCCCCcceeEEEECCCCeEEEEECCC
Confidence 45667888889999999999987 99999999999999999999999998 5689999999999999999999999999
Q ss_pred C-ccccchhhhhcCC
Q 010156 503 F-SQVVCLILFHSKS 516 (516)
Q Consensus 503 h-~s~y~~~~L~~~~ 516 (516)
| +|+|+|+||++++
T Consensus 85 H~~s~Y~~~~L~~~~ 99 (101)
T 3luu_A 85 HNTGIFTWEYLRRLD 99 (101)
T ss_dssp CCCCEEEHHHHHHHT
T ss_pred CceeEECHHHHHHhh
Confidence 9 9999999999864
No 21
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.92 E-value=7.5e-25 Score=216.67 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=135.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (516)
..+++|+|+|+|||+||||+|+|||..||+.|+||++||+|++.++++.+|+.+.. +.......+.+.+...+|
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 44689999999999999999999999999999999999999999998888776543 222334566777777789
Q ss_pred ceEEcCCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
++++|.+..... .+.+..+. +.++++.+. +.||||||||||....... ......+|.+++|+.++..+...+.
T Consensus 170 l~vl~~g~~~~~~~ell~~~~----l~~ll~~l~-~~yD~VIIDtpp~~~~~da-~~l~~~aD~vllVv~~~~~~~~~~~ 243 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSER----FAELVNWAS-KNYDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNTLKEVE 243 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSHH----HHHHHHHHH-HHCSEEEEECCCTTTCTHH-HHHTTTCSEEEEEEETTTSBHHHHH
T ss_pred EEEEeCCCCCCCHHHHhchHH----HHHHHHHHH-hCCCEEEEcCCCCcchHHH-HHHHHHCCeEEEEEeCCCCcHHHHH
Confidence 999998865433 33444443 444444443 6899999999997753211 1113357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
++++.+++.+.+++|+|+|++....
T Consensus 244 ~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 244 TSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHhCCCCEEEEEEcCccccc
Confidence 9999999999999999999976543
No 22
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.91 E-value=2.2e-24 Score=211.99 Aligned_cols=171 Identities=23% Similarity=0.266 Sum_probs=130.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (516)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.++++.+|+.... +.+.....+.+.+...+|
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 34689999999999999999999999999999999999999999998888876543 111122234566666689
Q ss_pred ceEEcCCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
++++|.+..... .+++..+ .+.++++.++ +.||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 160 l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSR----AFANLYDTLL-MNYNFVIIDTPPVNTVTDAQL-FSKFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCSHHHH-HHHHHCEEEEEEETTSCCHHHHH
T ss_pred EEEEECCCCCCCHHHHhChH----HHHHHHHHHH-hCCCEEEEeCCCCchHHHHHH-HHHHCCEEEEEEeCCCCcHHHHH
Confidence 999998764433 2333333 3444554444 689999999999764321111 12346999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeccccc
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
++++.+++.+.+++|+|+|++...
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCC
Confidence 999999999999999999997643
No 23
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.90 E-value=7.4e-24 Score=211.12 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=131.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeeeccCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (516)
..+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.++++.+|+.... +.......+.+.+...+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 34689999999999999999999999999999999999999998888888876542 111122234566666789
Q ss_pred ceEEcCCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 010156 245 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 245 l~vl~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
++++|++...... +++..+ .+.++++.+. +.||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 182 l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-VGRSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HGGGCSEEEEEEETTTSCTTHHH
T ss_pred EEEEECCCCCCCHHHHhCHH----HHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH-HHHHCCEEEEEEcCCCChHHHHH
Confidence 9999987654332 333333 3445555444 789999999999875221111 12357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 010156 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
++++.+++.+.+++|+|+|++....
T Consensus 256 ~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 256 LSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHhCCCCeEEEEEeCCccCC
Confidence 9999999999999999999976543
No 24
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.89 E-value=2e-23 Score=212.51 Aligned_cols=200 Identities=20% Similarity=0.218 Sum_probs=134.6
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeee-ccCCceEEc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-EYLGVKLVS 249 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~vl~ 249 (516)
..+++|+|+|+||||||||+|+|||..||+.|+||++||+|++ ++++.+|+.+.... .... ..++++...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~--------~~~v~g~~~l~~~~ 93 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHE--------PTKVKGYDNLYVVE 93 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSS--------CEECTTCSSEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcC--------ccccccccceeeec
Confidence 4578999999999999999999999999999999999999995 57777766542110 0000 012232221
Q ss_pred CCCCC--------------------C-------cccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-h--
Q 010156 250 FGFSG--------------------Q-------GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-L-- 299 (516)
Q Consensus 250 ~~~~~--------------------~-------~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~-~-- 299 (516)
..... . ......+......+.++.+.+.+.+||||||||||+.....+. +
T Consensus 94 id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~ 173 (349)
T 3ug7_A 94 IDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPE 173 (349)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHH
Confidence 11000 0 0001122222233444544444579999999999964321110 0
Q ss_pred ----------------------------------------------------------hhhcCCCeEEEEeCCCcchHHH
Q 010156 300 ----------------------------------------------------------CQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 300 ----------------------------------------------------------~~~~~~d~viiV~~p~~~s~~~ 321 (516)
..-...+.+++|++|+..++.+
T Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e 253 (349)
T 3ug7_A 174 VMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILE 253 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHH
Confidence 0001147899999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
+.+.++++++.++++.|+|+||+.+... ...+.. .++.++++.+.++.+.++.||.++
T Consensus 254 ~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 254 SERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARREL-QLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHH-HHHHHHHHHHHSTTSEEEEEECCS
T ss_pred HHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHH-HHHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999999999999999999876521 111111 246788999999999999999865
No 25
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.89 E-value=5.8e-24 Score=218.73 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=134.2
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--cc---c-C--------CCCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LE---M-N--------PEKR 235 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~--~~---~-~--------~~~~ 235 (516)
.+.+++|+|+|+||||||||+|+|||..||++|+||++||+| ..++++.++|.+... .. . . ...+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 346799999999999999999999999999999999999999 566888888765431 00 0 0 1122
Q ss_pred ceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 010156 236 TIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (516)
Q Consensus 236 ~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~ 315 (516)
.+.. ...|++++|++........+.......+++.+.. ++.||||||||||+.+.....+ +..+|.+++|++|+
T Consensus 219 ~i~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 219 CIKQ-SQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGS 292 (373)
T ss_dssp TCEE-CTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCC
T ss_pred Hhhc-CCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCC
Confidence 2333 3479999998765444444444444445555442 3689999999999998765554 55789999999999
Q ss_pred cch---HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChh
Q 010156 316 KLA---FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (516)
Q Consensus 316 ~~s---~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (516)
..+ +.++.+.++.+... .+ +++|.|++....+.. ...+++.+..++++++.||+|+.
T Consensus 293 ~~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~v~~~~~-------~~~~~fl~~~~l~~lG~IP~D~~ 352 (373)
T 3fkq_A 293 QLSNYKFMRAYESVVLLEQN-DD-INIIRNMNMIYNKFS-------NKNSEMLSNISIKTIGGAPRYEH 352 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEEEECSCC-------TTTCCCCCSCSCEEEEECCCCTT
T ss_pred chHHHHHHHHHHHHHHhccc-CC-cEEEehhHHHHHHHH-------HHHHHHhhcCCccceeecCCCCC
Confidence 988 55555555555542 22 566667653222111 11222333458899999999874
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=3e-23 Score=209.23 Aligned_cols=205 Identities=16% Similarity=0.217 Sum_probs=129.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-------------
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP------------- 239 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~------------- 239 (516)
|++|+|+|+||||||||+|+|||.+||++|+||++||+|+ .++++.+|+.+....... ....+..
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~-v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTK-ITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEE-EETTEEEEECCHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCcc-CCCCceeeccChHHHHHHHH
Confidence 5799999999999999999999999999999999999999 457777766542100000 0000000
Q ss_pred --eccCCceEEcCCCCCC-----cccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-h-------------
Q 010156 240 --TEYLGVKLVSFGFSGQ-----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T------------- 298 (516)
Q Consensus 240 --~~~~~l~vl~~~~~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~------------- 298 (516)
.......+++.+.... .....++......+.++.+.+.+.+||||||||||+.....+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 0000011222221100 011222333333444555444458999999999994311000 0
Q ss_pred ---------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 010156 299 ---------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (516)
Q Consensus 299 ---------------------------------------------~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (516)
...-...+.+++|++|+..++.++.++++++++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 00001136899999999999999999999999999
Q ss_pred CCEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 334 VPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 334 ~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
+++.|+|+||+.+... ...+ ....+.++++.+.++.+.++.||..+
T Consensus 251 i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 251 IHADGVIVNQVLPEESDCEFCNARR-KLQQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CCccEEEEcCCccccCCChHHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999999876521 1111 12235778899999989999999764
No 27
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=99.87 E-value=9.3e-23 Score=175.47 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=79.6
Q ss_pred cccceeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCC
Q 010156 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (516)
Q Consensus 423 ~~~~~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dg 502 (516)
.++.+.++...+.|.|.|.||.. +.|++.|||+|||||+|+++. ||+++. .+.+|.+.+++++|+|+|+|.|+||
T Consensus 10 ~p~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~Cpcaec~~~~--qr~l~~--~~~dv~i~~i~~vG~yaL~I~wsDG 84 (132)
T 2l6n_A 10 KVTGLKLKRKSRQLEISFDNGQQ-FTLSCELLRVYSPSAEVHGHG--NPVLVT--HKKNVNINAITPVGNYAVKLVFDDG 84 (132)
T ss_dssp CEEEEEEEGGGTEEEEEETTSCE-EEEEHHHHHHSCSCSSSSSSS--CCCCCC--CCSSCCEEEEEEETTTEEEEEETTT
T ss_pred CCeeEEEecCCCEEEEEECCCCE-EEeCHHHHHhcCCCcccCCcc--cccccc--CCCCcceEEEEecCCceEEEEeCCC
Confidence 35567788888999999999987 899999999999999999987 999886 5689999999999999999999999
Q ss_pred Ccc-ccchhhhhcC
Q 010156 503 FSQ-VVCLILFHSK 515 (516)
Q Consensus 503 h~s-~y~~~~L~~~ 515 (516)
|.| +|+|+||+++
T Consensus 85 H~SGiYs~~~L~~l 98 (132)
T 2l6n_A 85 HDTGLYSWKVLYDL 98 (132)
T ss_dssp BCCCCEEHHHHHHH
T ss_pred CccCEECHHHHHHH
Confidence 955 9999999874
No 28
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=99.87 E-value=1.2e-22 Score=173.39 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=79.1
Q ss_pred cccceeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCC
Q 010156 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (516)
Q Consensus 423 ~~~~~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dg 502 (516)
.++.+.++...+.|.|.|. |.. +.|++.|||+|||||+|+++ +||+++.. +.+|.+.+++++|+|+|+|.|+||
T Consensus 4 ~P~~i~l~~~~~~L~v~w~-G~~-~~~~~~wLRd~Cpcaec~~~--~qr~l~~~--~~dv~i~~i~~~G~yaL~I~wsDG 77 (124)
T 2l6p_A 4 IPSAIQLHKASKTLTLRYG-EDS-YDLPAEFLRVHSPSAEVQGH--GNPVLQYG--KLNVGLVGVEPAGQYALKLSFDDG 77 (124)
T ss_dssp CCSCCBCCTTTCEEEEEET-TEE-EEEEHHHHHHTCCCSSCCSC--CCCCCCCS--CTTCCEEEEEECSSSCEEEEETTS
T ss_pred CCeEEEEecCCCEEEEEEC-CEE-EEeCHHHHHhcCCCcccCCC--CccccccC--CCCcceEEEEEcCCceEEEEECCC
Confidence 3566778888899999999 776 99999999999999999997 99999874 689999999999999999999999
Q ss_pred C-ccccchhhhhcC
Q 010156 503 F-SQVVCLILFHSK 515 (516)
Q Consensus 503 h-~s~y~~~~L~~~ 515 (516)
| +|+|+|+||+++
T Consensus 78 H~sgiY~~~~L~~l 91 (124)
T 2l6p_A 78 HDSGLFTWDYLYEL 91 (124)
T ss_dssp CCCCCCTTHHHHHH
T ss_pred CcceEECHHHHHHh
Confidence 9 899999999875
No 29
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.87 E-value=3.7e-23 Score=210.71 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=112.3
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCccccc--ccCCCCCc----------
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRT---------- 236 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllID~D~~~~~~~~~l~~~~~~~--~~~~~~~~---------- 236 (516)
...++|+|+|+||||||||+|+|||.+|| +.|+||++||+|++ ++++.+|+.+.... ........
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~ 93 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAA 93 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHH
Confidence 44578999999999999999999999999 89999999999996 78887777643200 00000000
Q ss_pred ee----eec-----------cCCceEEcCCCCCCcc-cccCCccHHHHHHHHHHhcccC------CCCEEEEcCCC-CCC
Q 010156 237 II----PTE-----------YLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GTG 293 (516)
Q Consensus 237 i~----~~~-----------~~~l~vl~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~------~yD~VIID~pp-~~~ 293 (516)
+. ... ..++++++.+....+. ...++......+.++++.+.+. .|||||||||| |..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~t 173 (354)
T 2woj_A 94 LKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHT 173 (354)
T ss_dssp HHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHH
T ss_pred HHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHH
Confidence 00 000 0146666432110110 1223333334566666655532 79999999999 320
Q ss_pred ---------------------hhhhhh-----------------------------hhhcCCCeEEEEeCCCcchHHHHH
Q 010156 294 ---------------------DIQLTL-----------------------------CQVVPLTAAVIVTTPQKLAFIDVA 323 (516)
Q Consensus 294 ---------------------~~~~~~-----------------------------~~~~~~d~viiV~~p~~~s~~~~~ 323 (516)
.....+ .....+|.+++|++|+..++.++.
T Consensus 174 LrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~ 253 (354)
T 2woj_A 174 LRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETE 253 (354)
T ss_dssp HHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHH
Confidence 000000 000156889999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeccc
Q 010156 324 KGVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~ 345 (516)
++++.+++.++++.|+|+|++.
T Consensus 254 r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 254 RLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCCEEEEecCC
Confidence 9999999999999999999987
No 30
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.86 E-value=1.1e-21 Score=197.80 Aligned_cols=202 Identities=16% Similarity=0.171 Sum_probs=125.0
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEc
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (516)
.+.+++|.|+|+||||||||+|+|||.+||+.|+||++||+|++. ++..+++........ .....+|++.+.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~-------~v~~~~~L~~~~ 83 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEAR-------LVEGFDNLYAME 83 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCE-------ECTTCSSEEEEE
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCce-------eecCCCCceeee
Confidence 344567789999999999999999999999999999999999876 455555432110000 000001111111
Q ss_pred C------------------------CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-h------
Q 010156 250 F------------------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T------ 298 (516)
Q Consensus 250 ~------------------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~-~------ 298 (516)
. +........+++......+.++.+.+.+.+||||||||||......+ .
T Consensus 84 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~ 163 (334)
T 3iqw_A 84 IDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLE 163 (334)
T ss_dssp CCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC-
T ss_pred cCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 0 00001011223333334455555555568999999999993111000 0
Q ss_pred ----------------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 299 ----------------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 299 ----------------------------------------------------~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
.......+.+++|++|+..++.++.+++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~ 243 (334)
T 3iqw_A 164 KALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243 (334)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHH
Confidence 0000124579999999999999999999
Q ss_pred HHHHcCCCCEEEEEEecccccC-CCc-----cccccCCchHHHHHHHhCC-CeEEecCCC
Q 010156 327 RMFSKLKVPCIAVVENMCHFDA-DGK-----RYYPFGRGSGSQVVQQFGI-PHLFDLPIR 379 (516)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~-~~~-----~~~~~~~~~~~~~~~~~g~-~~l~~IP~~ 379 (516)
+.+++.++++.|+|+|++.+.. ... ..+..++..++++.+.|+. ..+..+|..
T Consensus 244 ~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~ 303 (334)
T 3iqw_A 244 QELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303 (334)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCC
Confidence 9999999999999999987421 111 0112244567778888865 455667753
No 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.1e-21 Score=194.86 Aligned_cols=204 Identities=17% Similarity=0.143 Sum_probs=128.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc--ccCCCCCceeeec--------
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRTIIPTE-------- 241 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~--~~~~~~~~i~~~~-------- 241 (516)
..++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+|+...... ...... .+....
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~-~l~~~~~~~~~~~~ 94 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFD-NLSAMEIDPNLSIQ 94 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCS-SEEEEECCHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCC-CeeEEecCHHHHHH
Confidence 346899999999999999999999999999999999999998 67776666532100 000000 000000
Q ss_pred --cCC-----ce-EEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--------hh--------
Q 010156 242 --YLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QL-------- 297 (516)
Q Consensus 242 --~~~-----l~-vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~--------~~-------- 297 (516)
..+ ++ +++... ..-...++++.....++++.+.+.+++||||||||||. +.. .+
T Consensus 95 ~~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPt-g~~l~lL~~p~~~~~~l~~l~ 172 (329)
T 2woo_A 95 EMTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPT-GHTLRFLNFPTVLEKALGKLG 172 (329)
T ss_dssp HHHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSS-SCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCc-hHHHHHHHHHHHHHHHHHHHH
Confidence 000 11 111000 00011233443344566777766667999999999993 221 00
Q ss_pred ----------hh-------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCE
Q 010156 298 ----------TL-------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 336 (516)
Q Consensus 298 ----------~~-------------------------------~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~ 336 (516)
.. ......+.+++|++|+..++.++.++++.+++.++++
T Consensus 173 ~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v 252 (329)
T 2woo_A 173 GLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDT 252 (329)
T ss_dssp TSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCC
Confidence 00 0000134799999999999999999999999999999
Q ss_pred EEEEEecccccCC-Ccc----ccccCCchHHHHHHHhCCCeEEecCCC
Q 010156 337 IAVVENMCHFDAD-GKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 337 ~gvV~N~~~~~~~-~~~----~~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
.|+|+|++.+... ... ....+++.++++.+.++...+..+|..
T Consensus 253 ~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 253 HNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 9999999874111 000 011233566778888865556778854
No 32
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.83 E-value=2.5e-21 Score=196.13 Aligned_cols=205 Identities=16% Similarity=0.147 Sum_probs=113.7
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCccc-----------ccccC-CCCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMN-PEKR 235 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllID~D~~~~~~~~~l~~~~~-----------~~~~~-~~~~ 235 (516)
.+..+.|+|+|+||||||||+|+|||..|| +.|+||++||+|++. +++.+|+.+.. +.... ....
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~-~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~ 92 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH-NLSDAFCQKFGKDARKVEGLPNLSCMEIDPEA 92 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC-HHHHHHTSCCCSSCEEETTEEEEEEEECCC--
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC-ChHHHhccccCCCceeccCCCCceEEeeCHHH
Confidence 344456778889999999999999999999 899999999999864 56656554211 00000 0000
Q ss_pred cee---ee-------ccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccC------------CCCEEEEcCCCCCC
Q 010156 236 TII---PT-------EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTG 293 (516)
Q Consensus 236 ~i~---~~-------~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------------~yD~VIID~pp~~~ 293 (516)
.+. .. ...++..+.. .....+++......+.++++.+.+. .||||||||||+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~ 168 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMMS----DMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGH 168 (348)
T ss_dssp -------------------------------------------------------------------CCEEEEECSSHHH
T ss_pred HHHHHHHHHHhhcccccccHhHHhH----HhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchH
Confidence 000 00 0001111110 0001112222223445555544433 89999999999321
Q ss_pred hhhhh---------------------------------------------------hhhhcCCCeEEEEeCCCcchHHHH
Q 010156 294 DIQLT---------------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDV 322 (516)
Q Consensus 294 ~~~~~---------------------------------------------------~~~~~~~d~viiV~~p~~~s~~~~ 322 (516)
...+. ...-...+.+++|++|+..++.++
T Consensus 169 tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea 248 (348)
T 3io3_A 169 TLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYET 248 (348)
T ss_dssp HHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHH
Confidence 11000 000012368999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccC-C--Cc----cccccCCchHHHHHHHhCCCeEEecCCC
Q 010156 323 AKGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (516)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~~~~~~-~--~~----~~~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (516)
.++++.+++.++++.|+|+||+.+.. . .- ..+..++..++++.+.++...+..+|..
T Consensus 249 ~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~ 312 (348)
T 3io3_A 249 ERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLL 312 (348)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCC
Confidence 99999999999999999999987643 1 00 0111244567788888876567777754
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.82 E-value=3.1e-20 Score=176.80 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=120.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCCccc----ccccCCCCCceeeeccCCceEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENR----LLEMNPEKRTIIPTEYLGVKLV 248 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~-l~~~~~----~~~~~~~~~~i~~~~~~~l~vl 248 (516)
|+|+|+|.||||||||+|+|||.+|+++|+||+++| |++...... .+.... +........ .....+..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 76 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQL---DYATVNPYTF 76 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCC---CHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCC---ChhhcccEEe
Confidence 689999999999999999999999999999999975 544322111 010000 000000000 0000011222
Q ss_pred cCCCCCCccccc-CCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh---hhhhhhcC--CCeEEEEeCCCcchHHHH
Q 010156 249 SFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFIDV 322 (516)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~---~~~~~~~~--~d~viiV~~p~~~s~~~~ 322 (516)
+.+........+ ........+.++++.+. ++||||||||||+++... ...+.+.. .+.+++|+.+...++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 77 AEPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHA 155 (224)
T ss_dssp SSCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHH
Confidence 211110000000 00112345556665554 789999999999887421 11111111 135888999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChh
Q 010156 323 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (516)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (516)
...++.+++.+.++.|+|+||+..... ..++..+.+.+.+|.++++.||++..
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~~~------~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPPGK------RHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSCCT------THHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCchh------hHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 999999988889999999999754321 12345677888899999999999874
No 34
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.81 E-value=2e-20 Score=192.56 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=82.7
Q ss_pred eeeecCCcEEEEEecCCCceeeechhhhhcCCCCCccccCCCCcccccCCCCCCCcccceEEEecCeeEEEEcCCCCccc
Q 010156 427 VIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQV 506 (516)
Q Consensus 427 ~~~d~~~~~l~i~~~dg~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dgh~s~ 506 (516)
+..+...+.|.|+|.||.+ ..|++.|||+||+|++|+|+.|+||++++.++|.++++.+++++| |+|+|.|+|||+|+
T Consensus 9 ~~~~~~~~~l~v~w~dG~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~s~ 86 (388)
T 3o2g_A 9 AEALDGAHLMQILWYDEEE-SLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHYSE 86 (388)
T ss_dssp EEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCEEE
T ss_pred eeecCCCCEEEEEECCCCe-eeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCceE
Confidence 4566678899999999998 899999999999999999999999999999999999999999987 89999999999999
Q ss_pred cchhhhhcCC
Q 010156 507 VCLILFHSKS 516 (516)
Q Consensus 507 y~~~~L~~~~ 516 (516)
|+|+||++|+
T Consensus 87 y~~~~L~~~~ 96 (388)
T 3o2g_A 87 FQADWLKKRC 96 (388)
T ss_dssp EEHHHHHHTC
T ss_pred eCHHHHHhhc
Confidence 9999999874
No 35
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.81 E-value=3.4e-19 Score=181.66 Aligned_cols=266 Identities=17% Similarity=0.154 Sum_probs=162.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC---
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF--- 250 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~--- 250 (516)
+.|.|+++|||+||||+|+|||..||+.|+||++||+ ++. ++..+|+..... ..... .+|++.+..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~-~l~~~~~~~~~~--------~~~~v-~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP-VLPLLLEQTLTP--------DPQQI-APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS-HHHHHHTSCCCS--------SCEEE-ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC-ChHHhhCCCCCC--------Ccccc-cccccccccCHH
Confidence 4567788999999999999999999999999999999 754 666665543110 00000 123322210
Q ss_pred ---------------------CC---CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---------
Q 010156 251 ---------------------GF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 297 (516)
Q Consensus 251 ---------------------~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~--------- 297 (516)
+. .........+......+.++.+...+.+||||||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 00 011111223322233445555444557899999999994111000
Q ss_pred --------------------------------------------------------hhhhhcCCCeEEEEeCCCcchHHH
Q 010156 298 --------------------------------------------------------TLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 298 --------------------------------------------------------~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
....-.....+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 000001125789999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHH
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~ 401 (516)
+.++++.+++.++++.|+|+|| .+ .++++.+.|+...+..+|.... +
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~--~~------------~l~~i~~~F~~~~v~~vpl~~~----------------e--- 277 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS--SQ------------TEGDLSAEFTPLSVTVVPDVTK----------------G--- 277 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--CS------------CCCCCGGGSTTSCEEECCCCBT----------------T---
T ss_pred HHHHHHHHHHcCCCccEEEEcC--HH------------HHHHHHHhcCCCceEECCCCCh----------------h---
Confidence 9999999999999999999999 11 1334555665555677775321 0
Q ss_pred HHHHHHHHHHHHHHHH-HhhcccccceeeecCCcEEEEEecCCC----------ceeeechhhhhcCCCCCccccCCCCc
Q 010156 402 ANTFQDLGVCVVQQCA-KIRQQVSTAVIYDKSIKAIKVKVPQSD----------EEFFLHPATVRRNDRSAQSVDEWTGD 470 (516)
Q Consensus 402 ~~~~~~La~~i~~~~~-~~~~~~~~~~~~d~~~~~l~i~~~dg~----------~~~~~~~~~LR~~c~c~~c~~~~t~~ 470 (516)
.+.++++.+ .... .. ...+.++.+++..+.+.+..|.-. +++.+...+.|++=+=|.-
T Consensus 278 --~l~~l~~~l-~~p~~~~-~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~i~LP~~------- 346 (374)
T 3igf_A 278 --DWQPLIDAL-PNFVEQA-EQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPA------- 346 (374)
T ss_dssp --BCHHHHHHC-CCHHHHH-HHSCCSEEEETTTTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEEEECCTT-------
T ss_pred --HHHHHHHHh-cCccccc-cCCCCCEEEEeccEEEEEECCCCCHHHeEEEEECCeEEEEECCEeecccCCHH-------
Confidence 244444433 1111 11 123456666776788888887442 3577777777776433321
Q ss_pred ccccCCCCCCCcccceEEEecCeeEEEEcCCCC
Q 010156 471 QKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF 503 (516)
Q Consensus 471 r~~~~~~~~~~i~~~~~~~~~~~~l~i~w~Dgh 503 (516)
+ ....+.++...++ .|.|.|-+.|
T Consensus 347 -------L-~~~~v~~A~~~~~-~L~i~~~~~~ 370 (374)
T 3igf_A 347 -------L-SGRPITGAKFQNN-YLIISFLEHH 370 (374)
T ss_dssp -------T-TTCCEEEEEEETT-EEEEEECCC-
T ss_pred -------H-cCCCccccEEECC-EEEEEEehhc
Confidence 1 2355677888776 4999998776
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.71 E-value=5.4e-18 Score=184.54 Aligned_cols=205 Identities=19% Similarity=0.168 Sum_probs=121.4
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-cccc--cCCC------CCceeeec
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE--MNPE------KRTIIPTE 241 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~-~~~~--~~~~------~~~i~~~~ 241 (516)
.++++|.|+++|||+||||+|+|||..|+++|+||++||+|+++ ++..+++... .+.. .... ...+....
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~-~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc-cHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999985 5666665421 1100 0000 00011110
Q ss_pred cCCceEEcCCCCCCcccccCCccH--HHHHHHHHHhcccCCCCEEEEcCCCCCC--------------------hhh--h
Q 010156 242 YLGVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTG--------------------DIQ--L 297 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~yD~VIID~pp~~~--------------------~~~--~ 297 (516)
..+++. .+. ......+.++.. ...++++.+.+.+.+||||||||||+.. +.. .
T Consensus 403 ~~~l~~--~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELDE--AGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCCH--HHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCCh--hhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 111110 000 000011222221 2345666655545689999999999832 110 0
Q ss_pred hhh-hh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcc-c----cccCCchHHHHHHHhC
Q 010156 298 TLC-QV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKR-Y----YPFGRGSGSQVVQQFG 369 (516)
Q Consensus 298 ~~~-~~--~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~-~----~~~~~~~~~~~~~~~g 369 (516)
... .+ ..++.+++|++|+..++.++.++++.+++.++++.|+|+|++........ + .......++++.+.|+
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 559 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA 559 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 000 01 14588999999999999999999999999999999999999876532111 0 0112234566777777
Q ss_pred CCeEEecCCCh
Q 010156 370 IPHLFDLPIRP 380 (516)
Q Consensus 370 ~~~l~~IP~~~ 380 (516)
.++ ..+|+.+
T Consensus 560 ~~v-~~iP~~~ 569 (589)
T 1ihu_A 560 SRV-ALVPVLA 569 (589)
T ss_dssp SSE-EEEECCS
T ss_pred CcE-EEccCCC
Confidence 655 7788654
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.71 E-value=3.2e-18 Score=186.35 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=105.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCCC-
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS- 253 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~- 253 (516)
.|.|+|+||||||||+|+|||..||++|+||++||+|++ +++..+|+.+..... ......+|+........
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~-------~~v~~~~~l~~~~~d~~~ 80 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTI-------QAIASVPGLSALEIDPQA 80 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSC-------EECTTSTTEEEEECCHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCC-------ceeccchhhhhccCCHHH
Confidence 455888999999999999999999999999999999996 677777776432100 00001123322221100
Q ss_pred -----------------CCc-----ccccCCcc-----HHHHHHHHHH--hcccCCCCEEEEcCCCCCChhhhh------
Q 010156 254 -----------------GQG-----RAIMRGPM-----VSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT------ 298 (516)
Q Consensus 254 -----------------~~~-----~~~~~~~~-----~~~~l~~l~~--~~~~~~yD~VIID~pp~~~~~~~~------ 298 (516)
... ...+.++. ....+.+++. .+ +..||||||||||+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~~~~lrll~lP~~~ 159 (589)
T 1ihu_A 81 AAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTGHTIRLLQLPGAW 159 (589)
T ss_dssp HHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCCHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCchhHHHHHHhHHHH
Confidence 000 00011100 1223445554 22 267999999999953211000
Q ss_pred -----------------------------h---hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 299 -----------------------------L---CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 299 -----------------------------~---~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
. ......+.+++|++|+..++..+.++++.+++.++++.|+|+|++..
T Consensus 160 ~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 160 SSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp TCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 0 00011236899999999999999999999999999999999999865
Q ss_pred c
Q 010156 347 D 347 (516)
Q Consensus 347 ~ 347 (516)
.
T Consensus 240 ~ 240 (589)
T 1ihu_A 240 K 240 (589)
T ss_dssp G
T ss_pred c
Confidence 4
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.68 E-value=3.1e-18 Score=178.30 Aligned_cols=243 Identities=19% Similarity=0.221 Sum_probs=144.0
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...+++++.+.|+++....+..|| +...|++.|+-......+ ..-..++.... +.+.+.+..+-+.....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~l~~~l~~~~~~ 92 (433)
T 2xxa_A 20 GRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEV---NKSLTPGQEFV----KIVRNELVAAMGEENQT 92 (433)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCC---CSSSCTTTTTH----HHHHHHHHHHHCSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccc---cccCChHHHHH----HHHHHHHHHHhcccccc
Confidence 446788888888888888777666 556677766432110111 01112222233 33444443322211100
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~~~~~~~~l~~~~~~~ 228 (516)
+.+ ..+.+++|+|+ ++||+||||++.+||.+|+++ |+||++||+|++++.....+.
T Consensus 93 ~~~----------------~~~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------ 149 (433)
T 2xxa_A 93 LNL----------------AAQPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------ 149 (433)
T ss_dssp CCC----------------CSSSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------
T ss_pred ccc----------------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------
Confidence 000 11345789998 799999999999999999999 999999999999875322110
Q ss_pred ccCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhh
Q 010156 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQV 302 (516)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~--~~~~----~~~~ 302 (516)
......|+++++.+... .....+.+.+..+.+.+||||||||||..+. .... ....
T Consensus 150 ---------~~~~~~~l~v~~~~~~~---------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~ 211 (433)
T 2xxa_A 150 ---------TLAEQVGVDFFPSDVGQ---------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS 211 (433)
T ss_dssp ---------HHHHHHTCEECCCCSSS---------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH
T ss_pred ---------hhcccCCeeEEeCCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh
Confidence 01123478888765421 1223334555544446899999999987642 1111 1113
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
...+.+++|+.+... .++...++.+.. ++++.|+|+|+++...+. +....+.+.+|.|+.+
T Consensus 212 ~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 212 INPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIKF 272 (433)
T ss_dssp SCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEEE
T ss_pred hcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeEE
Confidence 356788888776532 334444455543 456789999997654322 3455778888877543
No 39
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.63 E-value=3e-16 Score=131.33 Aligned_cols=85 Identities=27% Similarity=0.526 Sum_probs=80.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-hcCCCeeeeEEe
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVT 151 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL-~~l~gv~~v~v~ 151 (516)
.+.++++|+++|++|+|||++.|||++|+|++|.++++ +.|.|.|++|+++||+.+.+.++++++| .+++|+.+++|+
T Consensus 6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~-~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADEN-NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTT-CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCC-CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45689999999999999999999999999999999864 7899999999999999999999999999 899999999999
Q ss_pred eccCCCC
Q 010156 152 MSAQPAR 158 (516)
Q Consensus 152 l~~~p~~ 158 (516)
++++|+.
T Consensus 85 l~~~p~W 91 (108)
T 3lno_A 85 VVWNPPW 91 (108)
T ss_dssp ECCSSCC
T ss_pred EEecCCC
Confidence 9999986
No 40
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.62 E-value=1.4e-15 Score=126.36 Aligned_cols=83 Identities=37% Similarity=0.632 Sum_probs=79.0
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEeecc
Q 010156 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (516)
Q Consensus 75 ~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~ 154 (516)
.++++|+++|++|+||+++.|||++|+|++|.++++ +.|.|.|++|+++||+.+.+.++++++|.+++|+.+++|++++
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~ 84 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTF 84 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECC
T ss_pred chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEec
Confidence 578999999999999999999999999999999864 7999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 010156 155 QPAR 158 (516)
Q Consensus 155 ~p~~ 158 (516)
+|+.
T Consensus 85 ~p~W 88 (103)
T 1uwd_A 85 DPPW 88 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9875
No 41
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.61 E-value=1.9e-15 Score=125.53 Aligned_cols=82 Identities=27% Similarity=0.564 Sum_probs=78.3
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEEeecc
Q 010156 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (516)
Q Consensus 75 ~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v~l~~ 154 (516)
.++++|+++|++|+||+++.|||++|+|++|.+++ +.|.|.|++|+++||+.+.+.++++++|.+++|+.+++|++++
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 36889999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 010156 155 QPAR 158 (516)
Q Consensus 155 ~p~~ 158 (516)
+|+.
T Consensus 84 ~p~W 87 (103)
T 3cq1_A 84 EPPW 87 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9875
No 42
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.55 E-value=1.3e-14 Score=143.89 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=143.3
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE-
Q 010156 74 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN- 149 (516)
Q Consensus 74 ~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~- 149 (516)
..+++++.+.|+++.+-.+..|| +...++++++-... + . .+. ++-...+.+.+.+.+.+...-+-....
T Consensus 19 ~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~-~-~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (297)
T 1j8m_F 19 SSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLK-N-E----KPP-TYIERREWFIKIVYDELSNLFGGDKEPK 91 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-H-C----CCC-TTCCHHHHHHHHHHHHHHHHTTCSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-h-c----ccc-ccCChHHHHHHHHHHHHHHHhccccccc
Confidence 45777777888887777666666 45566665532110 0 0 111 111123445555555554433211100
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
+. +...+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 92 i~-----------------~~~~~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~------ 147 (297)
T 1j8m_F 92 VI-----------------PDKIPYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ------ 147 (297)
T ss_dssp CS-----------------CSSSSEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH------
T ss_pred cc-----------------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH------
Confidence 11 11125688887 7999999999999999999999999999999998754321100
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hh-hhh-----hhh
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LCQ 301 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~--~~-~~~-----~~~ 301 (516)
.....|+++++.+.. ......+.+.++.+.+.+||||||||||... .. .+. ...
T Consensus 148 ---------~~~~~~v~v~~~~~~---------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~ 209 (297)
T 1j8m_F 148 ---------LGQQIGVPVYGEPGE---------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYE 209 (297)
T ss_dssp ---------HHHHHTCCEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHH
T ss_pred ---------HhccCCeEEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHH
Confidence 011236777764311 1223344455555544799999999999776 21 111 112
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 302 ~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
...+|.+++|+.+.. . .++.+.++.+.+ ..++.|+|+|+++...+. +....+...+|.|+.+
T Consensus 210 ~~~~d~vllVvda~~-g-~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 210 AIKPDEVTLVIDASI-G-QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp HHCCSEEEEEEEGGG-G-GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred HhcCCEEEEEeeCCc-h-HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 346789999988753 2 333444455554 477799999997654321 2345677778887765
No 43
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.54 E-value=4e-14 Score=141.74 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=105.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+++|+|++. +|+||||++.+||..++..|++|+++|+|++++.....+. .+.. .....++.++|.+
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~---~~~~---------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE---EWIK---------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHH---HHHT---------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---HHHh---------ccccCCceEEeCC
Confidence 3579999965 9999999999999999999999999999998753210000 0000 0013578888644
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhh------h------cCCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ------V------VPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~------~------~~~d~viiV~~p~~~s~ 319 (516)
....... ....+.+.... ..+||||||||||........+.. . ...|.+++|+... ...
T Consensus 171 ~~~~~p~-------~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~-~~~ 241 (320)
T 1zu4_A 171 KLNADPA-------SVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT-TGQ 241 (320)
T ss_dssp STTCCHH-------HHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG-GTH
T ss_pred CCCCCHH-------HHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CcH
Confidence 3221111 11223332222 279999999999976532111000 1 1267888888766 333
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..+.++ +.+.. ..++.|+|+|+++....+ +....+...+|.|+.+.
T Consensus 242 ~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~i 287 (320)
T 1zu4_A 242 NGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKMI 287 (320)
T ss_dssp HHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEEE
Confidence 344333 33332 356789999997654322 35667788889887543
No 44
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.50 E-value=5.5e-14 Score=139.36 Aligned_cols=167 Identities=20% Similarity=0.198 Sum_probs=106.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+++|+++ +++|+||||++.+||..++..|.+|+++|+|++++.....+. . .....|+++++.+
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~------~---------~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR------L---------LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH------H---------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH------H---------hcccCCeEEEEcC
Confidence 45789998 899999999999999999999999999999998764322111 0 0122467788754
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhh------hhcCCCeEEEEeCCCcchHHHHHHH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC------QVVPLTAAVIVTTPQKLAFIDVAKG 325 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~------~~~~~d~viiV~~p~~~s~~~~~~~ 325 (516)
.... ....++..++.+...+||+|||||||..+....... .....+.+++|+.+.. . .++.+.
T Consensus 161 ~~~~---------p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGES---------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTCC---------HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCCC---------HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 3211 112223344333226899999999997653111111 1224678888877653 2 333333
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
++.+.. ..++.|+|+|+++..... +..-.+...+|.|+.+
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 444443 356789999997654322 3456777888988765
No 45
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.48 E-value=1e-13 Score=143.28 Aligned_cols=241 Identities=19% Similarity=0.171 Sum_probs=145.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.+.|+++....+..|| +...|++.|.-......+ .. +-...+.+.+.+.+.|...-+-....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~~L~~~~~~~~~~ 92 (425)
T 2ffh_A 20 GRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV------LE-SLTPAEVILATVYEALKEALGGEARL 92 (425)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTG------GG-CSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc------cc-cCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 446788888888888888777676 556667666432110111 10 11124456666666665443311111
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
+. +. .+++|+|+ +++|+||||++.+||..++..|++|+++|+|++.+.....+..
T Consensus 93 i~-----------------l~-~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 93 PV-----------------LK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp CC-----------------CC-SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred cc-----------------CC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 11 11 34688888 7899999999999999999999999999999998754321110
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--hhh----hhhhc
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLT----LCQVV 303 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~--~~~----~~~~~ 303 (516)
.....|+++++.+... .....+.+.++.++...||||||||||..+.. ... .....
T Consensus 148 ---------~~~~~gv~v~~~~~~~---------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ---------HHHHHTCCEEECCTTC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ---------hcccCCccEEecCCCC---------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 0112467788755321 11223344444443378999999999976421 111 11223
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
..+.+++|+.+.. . .++...++.+.. .+++.|+|+|+++..... +....+...+|.|+.+
T Consensus 210 ~pd~vlLVvDa~t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 210 GPDEVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp CCSEEEEEEEGGG-T-THHHHHHHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred CCceEEEEEeccc-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 4688888887653 2 334444444443 356789999997654322 3455677788988654
No 46
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.47 E-value=7.6e-15 Score=151.93 Aligned_cols=241 Identities=13% Similarity=0.145 Sum_probs=141.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeEE
Q 010156 74 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (516)
Q Consensus 74 ~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~v 150 (516)
..+++++.++|+++.+..+..|| +...|++++.-...... + ..+-...+.+...+++.|..+-+.....
T Consensus 22 ~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~------v-~~~~~~~~~v~~~l~~eL~~~L~~~~~~- 93 (443)
T 3dm5_A 22 SVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEK------P-PAGISKKEHIIKIVYEELTKFLGTEAKP- 93 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC------C-CTTCCHHHHHHHHHHHHHHHHTTSSCCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcc------c-cccCCcHHHHHHHHHHHHHHHhcCcccc-
Confidence 45788888899998888777666 44555655432210000 1 1111225566677777776653321100
Q ss_pred eeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 010156 151 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 230 (516)
Q Consensus 151 ~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~ 230 (516)
....+.+++|+++ |.+|+||||++.+||.+|+++|+||+++|+|++.+.....+.
T Consensus 94 ----------------~~~~~~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~-------- 148 (443)
T 3dm5_A 94 ----------------IEIKEKPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR-------- 148 (443)
T ss_dssp ----------------CCCCSSSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH--------
T ss_pred ----------------cccCCCCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH--------
Confidence 0111235688887 559999999999999999999999999999998864211000
Q ss_pred CCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h----hhhhhcC
Q 010156 231 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVVP 304 (516)
Q Consensus 231 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~----~~~~~~~ 304 (516)
......++.+.+.... ......+.+.++.+...+||+|||||++...... . .......
T Consensus 149 -------~~~~~~gvpv~~~~~~---------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~ 212 (443)
T 3dm5_A 149 -------QLLDRYHIEVFGNPQE---------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH 212 (443)
T ss_dssp -------HHHGGGTCEEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred -------HHHHhcCCcEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhc
Confidence 0011124444432211 1222334444444444679999999998543111 1 1112334
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
.|.+++|+.+.. . .++....+.+.+ ..++.|+|+|+++...+. +....+...+|.|+.+
T Consensus 213 pd~vlLVvDA~~-g-q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~f 271 (443)
T 3dm5_A 213 PHEVILVIDGTI-G-QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIKF 271 (443)
T ss_dssp CSEEEEEEEGGG-G-GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEEE
T ss_pred CceEEEEEeCCC-c-hhHHHHHHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 688888877654 2 233344455554 346789999997654322 3455666678888764
No 47
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.44 E-value=2.4e-13 Score=129.64 Aligned_cols=194 Identities=9% Similarity=0.028 Sum_probs=117.8
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCC--cccccccCCCCCceeeeccCCceE
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSP--ENRLLEMNPEKRTIIPTEYLGVKL 247 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~-l~~--~~~~~~~~~~~~~i~~~~~~~l~v 247 (516)
+.|+.|.|++...|+||||++++|+.+|+++|+||..+- |........ -+. .+......... .+....+...
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~~~~~~D~~~~~~~~~---~~~~~~~~~~ 76 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSELCEDVESILNAYKHK---FTAAEINLIS 76 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSSSBHHHHHHHHHTTTS---SCHHHHCSEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCCCCChHHHHHHhcCCC---CChhhEEEEE
Confidence 457899999999999999999999999999999999964 211000000 000 00000000000 0000112233
Q ss_pred EcCCCCCCcccccCC-ccHHHHHHHHHHh-cccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchH
Q 010156 248 VSFGFSGQGRAIMRG-PMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 248 l~~~~~~~~~~~~~~-~~~~~~l~~l~~~-~~~~~yD~VIID~pp~~~~~~------~~~~~~~~~d~viiV~~p~~~s~ 319 (516)
+.............+ ......+.+.++. +. .+||+||||+++|+.... ..++.. ....+++|+.+...++
T Consensus 77 ~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~-l~~pviLV~~~~~~~i 154 (228)
T 3of5_A 77 FNQAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKA-LQIPVLLVSAIKVGCI 154 (228)
T ss_dssp ESSSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHH-HTCCEEEEEECSTTHH
T ss_pred ECCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHH-cCCCEEEEEcCCcchH
Confidence 332211111100111 1122345555555 44 799999999998764211 111111 1245889999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecC
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (516)
..+...++.+++.+.++.|+|+|++..+... .....+.+++.+|.|+++.||
T Consensus 155 ~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~------~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 155 NHTLLTINELNRHNIKLAGWIANCNDSNIKY------IDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECCTTCSC------HHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEEECcCCcchh------hHHHHHHHHHhhCCCEEEECC
Confidence 9999999999989999999999997543211 124567788889999999999
No 48
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.42 E-value=3.1e-14 Score=150.27 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=136.9
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...++++|.++|+++....+..|| +...|++.|+-... +. .+. .+-...+.+.+.+++.|..+-+.....
T Consensus 21 ~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~-~~-----~~~-~~~~~~~~~~~~v~~eL~~ll~~~~~~ 93 (504)
T 2j37_W 21 TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAID-LE-----EMA-SGLNKRKMIQHAVFKELVKLVDPGVKA 93 (504)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHT-TC-----CCC-SSSCHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cC-----ccc-ccCChHHHHHHHHHHHHHHHhccccch
Confidence 345777777777777776666555 45566665532110 10 011 111124456677777776653321110
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
+.+ .+...++|+|+ +.+|+||||++.+||.+|++.|+||++||+|++++.....+...
T Consensus 94 ~~~----------------~~~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~----- 151 (504)
T 2j37_W 94 WTP----------------TKGKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN----- 151 (504)
T ss_dssp CCC----------------CSS--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHH-----
T ss_pred hcc----------------ccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHH-----
Confidence 000 01234689988 67999999999999999999999999999999886532111100
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--hh-h---hhhhc
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-T---LCQVV 303 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~--~~-~---~~~~~ 303 (516)
....++.+++.+... .....+.+.+..+.+.+||+||||||+..... .. . .....
T Consensus 152 ----------~~~~~i~v~~~~~~~---------dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i 212 (504)
T 2j37_W 152 ----------ATKARIPFYGSYTEM---------DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI 212 (504)
T ss_dssp ----------HHHHTCCEEECCCCS---------CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred ----------hhccCceEEccCCCC---------CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhh
Confidence 011245555432111 11223333444444478999999999976421 11 0 11123
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE
Q 010156 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (516)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 373 (516)
..|.+++|+.+... .. .....+.+.+. +++.++|+|+++..... +....+.+.+|.|+.
T Consensus 213 ~pd~vllVvDa~~g-~~-~~~~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 213 QPDNIVYVMDASIG-QA-CEAQAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp CCSEEEEEEETTCC-TT-HHHHHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred cCceEEEEEecccc-cc-HHHHHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 56888888877553 11 23334444432 55568999997654322 234456778898874
No 49
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.39 E-value=2.9e-14 Score=147.61 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=142.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeeeE
Q 010156 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (516)
Q Consensus 73 ~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v~ 149 (516)
...+++++.++|+++.+..+..|| +...|+++|.-......+ ..+-...+.+.+.+.+.|..+.+....
T Consensus 17 ~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~v~~~v~~eL~~~L~~~~~- 88 (433)
T 3kl4_A 17 STPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP-------PSVLERKEWFISIVYDELSKLFGGDKE- 88 (433)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC-------CTTCCHHHHHHHHHHHHHHHHHCSSSC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccc-------cccCChHHHHHHHHHHHHHHhcCcccc-
Confidence 456889999999999998887777 556666666432210011 112223566777777777654321100
Q ss_pred EeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 010156 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (516)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~ 229 (516)
.. ......+++|+++ |.+|+||||++.+||..|+..|++|+++|+|++.+.....+.
T Consensus 89 -------~~--------~~~~~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~------- 145 (433)
T 3kl4_A 89 -------PN--------VNPTKLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL------- 145 (433)
T ss_dssp -------CC--------CSCCSSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH-------
T ss_pred -------cc--------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH-------
Confidence 00 0112235678877 889999999999999999999999999999987653110000
Q ss_pred cCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCC---hhhh-----hhhh
Q 010156 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQL-----TLCQ 301 (516)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~---~~~~-----~~~~ 301 (516)
......++.+..... +..........+..+.+.+||+||||||+... +..+ ....
T Consensus 146 --------~~~~~~gv~~~~~~~---------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 146 --------QLGNQIGVQVYGEPN---------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp --------HHHHTTTCCEECCTT---------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred --------HHHHhcCCceeeccc---------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 000112333333211 11223344455555555799999999998543 1110 1111
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 302 ~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
....+.+++|+.+... .++....+.+.+ ..++.|+|+|+.+...+. +..-.+....|.|+.+
T Consensus 209 ~~~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~f 270 (433)
T 3kl4_A 209 VLKPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIKF 270 (433)
T ss_dssp HHCCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEEE
T ss_pred hhCCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEEE
Confidence 2245778888766532 233344455553 245689999997655332 3455666678888654
No 50
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.38 E-value=6.4e-12 Score=130.64 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=103.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
+++|+|++ .+|+||||++.+||..++++|+||+++|+|++++.....+.. .....|+.+++.+.
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~~ 162 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDET 162 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecCC
Confidence 45888885 699999999999999999999999999999998764322110 01124667776541
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--hh----hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~~----~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (516)
...+. ...+.+.+..+ ..||+||||||+...... .. .......|.+++|+.+... . ++....
T Consensus 163 ~~~dp--------~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~-~~~~~~ 230 (432)
T 2v3c_C 163 RTKSP--------VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q-QAGIQA 230 (432)
T ss_dssp SCCSS--------STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G-GHHHHH
T ss_pred CCCCH--------HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H-HHHHHH
Confidence 11110 01123344433 689999999999764211 11 1122346888888765432 1 333344
Q ss_pred HHHHcCCC-CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 327 RMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 327 ~~l~~~~~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
+.+.. +. ++.++|+|+++..... +....+...+|.|+.+
T Consensus 231 ~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 231 KAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp HHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred HHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 44543 35 7789999997654321 2344577888888754
No 51
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=4e-13 Score=130.52 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=42.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~ 218 (516)
+..+++++++||||||||++.+||..|+ .|+||++||+|+|.+.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 4568899999999999999999999999 999999999999987654
No 52
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.30 E-value=1.2e-11 Score=119.25 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=115.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
+.|+.|.|++...|+|||++++.|+.+|+++|+||..+-.=..+.. .. +.+............ . .+...+..
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~-~~--~~D~~~~~~~~g~~~---~--~~~~~~~~ 95 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTA-RG--DDDLAEVGRLAGVTQ---L--AGLARYPQ 95 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGG-GT--CCHHHHHHHHHCCCE---E--EEEEECSS
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCC-CC--CHHHHHHHHHcCCCC---C--CCCeeECC
Confidence 4678999999999999999999999999999999999852111100 00 000000000000000 0 01222211
Q ss_pred CCCCCcccccCC--ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHH
Q 010156 251 GFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFID 321 (516)
Q Consensus 251 ~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~-------~~~~~~~~~~d~viiV~~p~~~s~~~ 321 (516)
...........+ ......+.+.++.+. .+||+||||+++|+... ...++. ....-+++|+.+...++..
T Consensus 96 p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~-~l~~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 96 PMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAV-DVAAAALVVVTADLGTLNH 173 (251)
T ss_dssp SSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHH-HTTCEEEEEECSSTTHHHH
T ss_pred CCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHH-HcCCCEEEEEcCCCccHHH
Confidence 111000000111 112334566666554 79999999999987421 111111 1245689999999989999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCCCh
Q 010156 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (516)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (516)
+...++.+++.+.++.|+|+|++..+.... .....+.++ +. +|+++.||++.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~-----~~~~~~~le-~~-vpvLG~iP~~~ 225 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGLV-----AASNRSALA-RI-AMVRAALPAGA 225 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCHH-----HHHHHHHHH-HH-SCEEEEEETTG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhhh-----hhhHHHHHH-Hh-CCEEEEeeCCC
Confidence 999999998889999999999974322110 112334444 44 99999999875
No 53
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.26 E-value=4.9e-11 Score=118.41 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=100.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+++|+|++. +|+||||++.+||..++..|++|+++|+|.+.+.... .+.. .....|+.+++..
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~~---------~~~~~gl~~~~~~ 166 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLKI---------WGERVGATVISHS 166 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHHH---------HHHHHTCEEECCS
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHHH---------HHHHcCCcEEecC
Confidence 3579999965 9999999999999999999999999999987643110 0000 0011255565532
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhh------cCCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQV------VPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~------~~~~------~~~d~viiV~~p~~~s~ 319 (516)
... .....+...+......+||+||||+|+........ .... ...+.+++|+... ...
T Consensus 167 s~~---------~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~ 236 (306)
T 1vma_A 167 EGA---------DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQ 236 (306)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHH
T ss_pred Ccc---------CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCH
Confidence 211 11222111222112278999999999864321100 0001 1256778887665 333
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..+..+ +.+.+ ..++.|+|+|+.+....+ +.+..+...+|.|+.+.
T Consensus 237 ~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~i 282 (306)
T 1vma_A 237 NGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKFI 282 (306)
T ss_dssp HHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEEE
Confidence 333333 33433 256789999997654432 45778888999888764
No 54
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.22 E-value=7.3e-11 Score=113.07 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=100.8
Q ss_pred cccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc-c-cCCCCCceeeec
Q 010156 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL-E-MNPEKRTIIPTE 241 (516)
Q Consensus 166 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~--~~-~-~~~~~~~i~~~~ 241 (516)
.+++..|++.|.|++...|+|||++++.|+.+|+++|+||..+- |........-+.... .. . .......+.. .
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~-~ 90 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAINHSSDAHLFLQDNRLLDRSLTL-K 90 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTCCCSHHHHHHHHHHTTCTTCCH-H
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCCCCchHHHHHHHHHHHhCCCCh-H
Confidence 46788899999999999999999999999999999999999985 211111000000000 00 0 0000000000 0
Q ss_pred cCCceEEcCCCCCCcccccCC---ccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEe
Q 010156 242 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVT 312 (516)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~~~d~viiV~ 312 (516)
.-+...+.............+ ......+.+.++.+. ..||+||||+++|+.... ..++.. ...-+++|+
T Consensus 91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~-l~~pVILV~ 168 (242)
T 3qxc_A 91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALK-LKAKMLLIS 168 (242)
T ss_dssp HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHH-HTCEEEEEE
T ss_pred HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHH-cCCCEEEEE
Confidence 001122211111000000001 112234555555554 789999999998875321 111111 124589999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 313 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 313 ~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+...++..+...++.+++.+++ .|+|+|++..+
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 99999999999999999999999 99999997543
No 55
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.17 E-value=9e-12 Score=105.33 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=64.8
Q ss_pred cHHHHHHHhccCCCCCCCCCccccCCeeEEEEe-----cCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhc-CCCeeeeE
Q 010156 76 AENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN-----EALGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKVN 149 (516)
Q Consensus 76 ~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~-----~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~-l~gv~~v~ 149 (516)
.+++|+++|++|+|||++.++++||+|+++.+. ++.+.|.|.|++|.|+||+...|...++.+|.. +++.-+++
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 578999999999999999999999999997663 222679999999999999999999999999965 66644444
Q ss_pred Eee
Q 010156 150 VTM 152 (516)
Q Consensus 150 v~l 152 (516)
+.+
T Consensus 89 v~I 91 (130)
T 3ux2_A 89 IYI 91 (130)
T ss_dssp CCC
T ss_pred EEE
Confidence 443
No 56
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.02 E-value=5.5e-10 Score=110.50 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
+++|+|++ .+|+||||++.+||..++. .|++|+++|+|++.+.....+. ... ...|+.+...
T Consensus 105 g~vi~lvG-~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~------~~~---------~~~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLFG-STGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLK------TYA---------ELLQAPLEVC- 167 (296)
T ss_dssp SSEEEEEE-STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHH------HHH---------TTTTCCCCBC-
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHH------HHH---------HhcCCCeEec-
Confidence 46899985 5999999999999999996 8999999999998643211100 000 0012211110
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h-hhhhhc---CCCeEEEEeCCCcchHHHHHHH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVV---PLTAAVIVTTPQKLAFIDVAKG 325 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~-~~~~~~---~~d~viiV~~p~~~s~~~~~~~ 325 (516)
.. ...+...+..+ .+||+|||||++...... + .+..+. ..+.+++|+... ....++.+.
T Consensus 168 ---------~~---~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~~ 232 (296)
T 2px0_A 168 ---------YT---KEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKHI 232 (296)
T ss_dssp ---------SS---HHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHHH
T ss_pred ---------CC---HHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHHH
Confidence 00 01233444333 689999999988653211 1 111122 245556666333 234455555
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 010156 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (516)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (516)
.+.+.. +++.|+|+|+.+..... +....+...+|.|+.+
T Consensus 233 ~~~~~~--l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 233 VKRFSS--VPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp TTTTSS--SCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHhc--CCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 555543 45679999997544321 3556677778887655
No 57
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.80 E-value=1.3e-08 Score=103.37 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=82.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
...+|+|+ |++|+||||++.+|+..++..|+||+++|+|++.+..... ++.... .......+++.+.+.
T Consensus 78 ~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~---------~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 78 NAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTR---------MARLAVHPNAYIRPS 147 (355)
T ss_dssp CSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEECC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhh---------HHhhccCCCeeEEEC
Confidence 34577776 7899999999999999999999999999999987642211 111000 000112356677664
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (516)
+...... .........+..+...+||++|||||+ ++...... ...+|.+++|+.++..... ..+...+
T Consensus 148 ~~~~~~~------~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~- 215 (355)
T 3p32_A 148 PTSGTLG------GVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV- 215 (355)
T ss_dssp C--CCHH------HHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS-
T ss_pred CCCcccc------chhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH-
Confidence 4321110 111222222233334789999999975 55443333 3567999999887653211 0000001
Q ss_pred cCCCCEEEEEEecccc
Q 010156 331 KLKVPCIAVVENMCHF 346 (516)
Q Consensus 331 ~~~~~~~gvV~N~~~~ 346 (516)
.+.+ ..+|+|+++.
T Consensus 216 -~~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 216 -LELA-DIVVVNKADG 229 (355)
T ss_dssp -GGGC-SEEEEECCCG
T ss_pred -hhcC-CEEEEECCCC
Confidence 1223 3578899764
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.67 E-value=2.6e-08 Score=93.55 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=40.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
++...|.++||||||||+++++|..++++|++|+++|+|+|+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 46778889999999999999999999999999999999998754
No 59
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.52 E-value=6.3e-08 Score=96.90 Aligned_cols=249 Identities=18% Similarity=0.190 Sum_probs=136.4
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCCeeee
Q 010156 72 STGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (516)
Q Consensus 72 ~~~~~~~~v~~aL~~V~DPel~~~i---v~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~l~~~v~~aL~~l~gv~~v 148 (516)
....+++++.+.|+++.+..+..|| +...++++|+-.-....+. .... ..+.+.+.+++.+..+-+-..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~l~~~l~~~~- 115 (328)
T 3e70_C 44 TVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVR---IGTD----KGKIIEEAVKEAVSEILETSR- 115 (328)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEE---CC-------CHHHHHHHHHHHHHHSCCSS-
T ss_pred hccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccC---CccC----HHHHHHHHHHHHHHHHhCCcc-
Confidence 3556889999999999888777777 5566777665432111221 1111 144566667776665432111
Q ss_pred EEeeccCCCCchhhccccccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc
Q 010156 149 NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (516)
Q Consensus 149 ~v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~ 228 (516)
.+.+. .+ ......+.+|++. |..|+||||+...||..+...|.+|++++.|.+....... +.
T Consensus 116 ~~~~~------~~-----~~~~~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eq------l~ 177 (328)
T 3e70_C 116 RIDLI------EE-----IRKAEKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQ------LE 177 (328)
T ss_dssp CCCHH------HH-----HHSSCSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHH------HH
T ss_pred ccchh------hh-----cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHH------HH
Confidence 01110 00 0011235688888 6699999999999999999999999999999876431100 00
Q ss_pred ccCCCCCceeeeccCCceEEcCCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h----hhhhh
Q 010156 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQV 302 (516)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~----~~~~~ 302 (516)
.....-|+.+++........ ......+.... ...||++++|+++...... . .....
T Consensus 178 ---------~~~~~~gv~~v~q~~~~~p~-----~~v~e~l~~~~----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra 239 (328)
T 3e70_C 178 ---------EHAKRIGVKVIKHSYGADPA-----AVAYDAIQHAK----ARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239 (328)
T ss_dssp ---------HHHHHTTCEEECCCTTCCHH-----HHHHHHHHHHH----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHH
T ss_pred ---------HHHHHcCceEEeccccCCHH-----HHHHHHHHHHH----hccchhhHHhhccchhHHHHHHHHHHHHHHH
Confidence 00011234344322111100 01111222111 2579999999987643111 0 01122
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
...|..+++..+... .++...++.+.+ ...+.++|+|+.+..... +..-.+...+|.|+.+.
T Consensus 240 l~~de~llvLDa~t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 240 TKPNLVIFVGDALAG--NAIVEQARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILFV 301 (328)
T ss_dssp HCCSEEEEEEEGGGT--THHHHHHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEEE
T ss_pred hcCCCCEEEEecHHH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEEE
Confidence 346777777764332 344444555543 234468999996643322 34556777888887664
No 60
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.38 E-value=1.1e-06 Score=91.85 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=92.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+.+|+|+ |..|+||||+...||..+...|.+|++.+.|.+...... .+... ....++.+++-.
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~~~---------~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQVW---------GQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHHHH---------HHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHHHH---------HHhcCceEEecc
Confidence 35689988 779999999999999999988999999999876521000 00000 000123333311
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh-hhhh--hhhh---------cCCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLT--LCQV---------VPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~-~~~~--~~~~---------~~~d~viiV~~p~~~s~ 319 (516)
... .....+...+......+||+|||||++.... ..+. +..+ ..-+.+++|..+...
T Consensus 356 ~~~---------~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-- 424 (503)
T 2yhs_A 356 TGA---------DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-- 424 (503)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--
T ss_pred cCc---------CHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--
Confidence 100 0111122222211227899999999886532 1110 0000 013456777665432
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.+....++.+.+ ...+.++|+|+.+...++ +.+-.+...+|.|+.+.
T Consensus 425 q~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~fi 471 (503)
T 2yhs_A 425 QNAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRYI 471 (503)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEEE
Confidence 233334444443 133468999996643322 45677788889887763
No 61
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.37 E-value=2.6e-06 Score=85.85 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=68.4
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeeeccCCceEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (516)
...+|+++ |++|+||||+..+|+..++..|.+|.++|.|++.+.... +++........ ...++..+.+.
T Consensus 55 ~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~~ 124 (341)
T 2p67_A 55 NTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRPV 124 (341)
T ss_dssp CSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEEE
T ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeecC
Confidence 45688887 699999999999999999999999999999998754321 12211110000 00112222221
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 010156 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~ 316 (516)
.... ..+......++.+. .+.+.+|+++|||||+-. +..... ...+|.+++|+.+..
T Consensus 125 ~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~-~~~~~~--~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 125 PSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVGVG-QSETEV--ARMVDCFISLQIAGG 181 (341)
T ss_dssp CC----------CHHHHHHHHHH-HHHHTTCSEEEEEEECCT-THHHHH--HTTCSEEEEEECC--
T ss_pred cccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCCcc-chHHHH--HHhCCEEEEEEeCCc
Confidence 1100 01111222333332 222478999999998743 332222 356899999988754
No 62
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.97 E-value=7.1e-05 Score=73.92 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=90.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (516)
.+.+|+++ |.+|+||||+...||..+...|.+|++.+.|.+...... .+... ....++.+++-.
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~------ql~~~---------~~~~~i~~v~q~ 164 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT------QLSEW---------GKRLSIPVIQGP 164 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTH------HHHHH---------HHHHTCCEECCC
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHH------HHHHH---------HHhcCceEEEeC
Confidence 45689999 779999999999999999988999999999987632100 00000 000123333311
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--hh--------hh--hhcCCCeEEEEeCCCcchH
Q 010156 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT--------LC--QVVPLTAAVIVTTPQKLAF 319 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~~--~~--------~~--~~~~~d~viiV~~p~~~s~ 319 (516)
..... .......+.... ...+|++++|+++...... .. ++ ....-+.++++..+...
T Consensus 165 ~~~~p-----~~~v~~~v~~~~----~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~-- 233 (304)
T 1rj9_A 165 EGTDS-----AALAYDAVQAMK----ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG-- 233 (304)
T ss_dssp TTCCH-----HHHHHHHHHHHH----HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--
T ss_pred CCCCH-----HHHHHHHHHHHH----hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--
Confidence 11100 001112222211 1468999999987543111 00 00 01123456677665433
Q ss_pred HHHHHHHHHHH-cCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 320 IDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 320 ~~~~~~~~~l~-~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..+...+..+. ..+. .++|+|+.+....+ +..-.+...++.|+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~--t~iivTh~d~~a~g--------g~~l~i~~~~~~pi~~i 280 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGL--TGVIVTKLDGTAKG--------GVLIPIVRTLKVPIKFV 280 (304)
T ss_dssp THHHHHHHHHHHHHCC--SEEEEECTTSSCCC--------TTHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHHHHcCC--cEEEEECCcccccc--------cHHHHHHHHHCCCeEEE
Confidence 23333444443 3343 57888986433221 45667778889887653
No 63
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.94 E-value=6e-05 Score=75.20 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=109.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.+.|.+++.--+|||||++..|..+|.++|.++..+=....+ .+. . ....+ +|
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----~~~-------~-----~~gi~-----~D------ 204 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----VML-------E-----GDGVA-----LD------ 204 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----HHH-------H-----SCSCC-----GG------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----hhh-------h-----cCCcc-----hh------
Confidence 678999999999999999999999999999999884321111 000 0 00000 00
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCCh----hhhhhhhhcCCCeEEEEeCCCcchH---------
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKLAF--------- 319 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~----~~~~~~~~~~~d~viiV~~p~~~s~--------- 319 (516)
..........++++...+. ++||+|||-...|+-. ..+.+......+.+|++..|....+
T Consensus 205 ------av~~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 205 ------AVRVDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp ------GSBHHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred ------HHHHHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 0011122334555555543 6899999998876532 2223333345688999999877766
Q ss_pred --HHHHHHHHHHHc-----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecCC
Q 010156 320 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (516)
Q Consensus 320 --~~~~~~~~~l~~-----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (516)
.....+++.+.. .+.++.|+++|....+.. ..++..+.+++.+|+|.+..+.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~------~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEY------AAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH------HHHHHHHHHHHHHCSCEECHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCEEEEecC
Confidence 777777777755 678899999998543321 12356888999999988876544
No 64
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.88 E-value=7.8e-06 Score=83.59 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=46.8
Q ss_pred CcceEEEEEeCCC---CChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc
Q 010156 171 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (516)
Q Consensus 171 ~~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~ 225 (516)
...|+|.|+|..+ |.||||+++|||..||+.|+||+++ .+.|+++..||...
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 3568999999999 9999999999999999999999998 88999888776553
No 65
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.85 E-value=6.4e-05 Score=84.30 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.||++||....|+.. ....++... -.-+|+|+....-++..+.-.++.+...++++.|+|+|+...
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l-~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~------- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPF-RLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL------- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGG-CCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS-------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch-------
Confidence 799999998775431 111222111 124788888887788888888888888899999999997531
Q ss_pred cccCCchHHHHHHH----hCCCeEEecCCCh
Q 010156 354 YPFGRGSGSQVVQQ----FGIPHLFDLPIRP 380 (516)
Q Consensus 354 ~~~~~~~~~~~~~~----~g~~~l~~IP~~~ 380 (516)
...+.+.+. .++++++.+|+.+
T Consensus 273 -----~~~~~l~~~l~~~~~v~vLg~lP~~~ 298 (831)
T 4a0g_A 273 -----VNEVPLTSYLRNKVPVLVLPPVPKDP 298 (831)
T ss_dssp -----CTHHHHHHHTTTSSCEEEECCCCCCT
T ss_pred -----hHHHHHHHHHHhCCCceeeCCCCCCC
Confidence 123333333 4555677888765
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.72 E-value=0.00036 Score=70.37 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=36.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|+++ |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 4689988 6799999999999999999888999999999765
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00079 Score=66.28 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|++. |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 100 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4689988 6799999999999999999888999999988765
No 68
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.53 E-value=0.0004 Score=76.50 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=61.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..|++.|||||+...........+..+|.+++|+.+...........++.+...+++++ +|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 56899999999864322233334557899999999876655556667777777788865 678997643321 12
Q ss_pred chHHHHHHHhCCCeE-EecCC
Q 010156 359 GSGSQVVQQFGIPHL-FDLPI 378 (516)
Q Consensus 359 ~~~~~~~~~~g~~~l-~~IP~ 378 (516)
...+++.+.++...+ ..+|.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi 173 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAI 173 (704)
T ss_pred HHHHHHHHHhCCCceeEEccc
Confidence 467778888876433 34564
No 69
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.41 E-value=0.0006 Score=72.48 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..+.+.|+|||+...........+..+|.+++|+.+...........++.+...+++ +-+++|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~------~~ 152 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD------PM 152 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC------HH
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc------HH
Confidence 578899999987533222223335678999999988765445566777777777888 45788997643221 11
Q ss_pred chHHHHHHHhCCCeE
Q 010156 359 GSGSQVVQQFGIPHL 373 (516)
Q Consensus 359 ~~~~~~~~~~g~~~l 373 (516)
+..+++.+.++.+..
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 357788888886543
No 70
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.31 E-value=0.00034 Score=70.58 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+++.|+ +++|+||||+|.++|..+++.|.+|++||++.
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3466666 89999999999999999999999999999974
No 71
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.29 E-value=0.00067 Score=62.05 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=31.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.|+.++| .||||.|..+|...+.+|+||+++=+..
T Consensus 31 i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 31 IIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp EEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 44454888 9999999999999999999999997776
No 72
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.18 E-value=0.0005 Score=61.56 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=35.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+|++|.|++ ..|+||||++..|+..|..+|++|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 467888885 669999999999999999999999999999864
No 73
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.12 E-value=0.001 Score=67.32 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.|+ +..|+||||++.++|..+++.|.+|++||++.
T Consensus 75 ~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 466665 88999999999999999999999999999985
No 74
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.004 Score=62.52 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
..+|+++ |..|+||||+.-.|+..+...|.+|.++..|++...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 4578887 999999999999999999888999999999997643
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.95 E-value=0.013 Score=52.55 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
..+++.|+|+|+...........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++...+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~--- 142 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRT--- 142 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCccc---
Confidence 34678999998743221221222345688888776544 455555555555443 2455 45888997753311
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+.++.+
T Consensus 143 --~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 143 --VDTKQAHELAKSYGIP 158 (190)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --CCHHHHHHHHHHcCCe
Confidence 1223456666667654
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.88 E-value=0.01 Score=51.39 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (516)
..+++.|+|+|+..............+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++...+.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc---
Confidence 35678999998754222222222345788888877654 3445555555544432 455 45888997754321
Q ss_pred cccCCchHHHHHHHhCCCe
Q 010156 354 YPFGRGSGSQVVQQFGIPH 372 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~ 372 (516)
......+++.+.++.++
T Consensus 125 --~~~~~~~~~~~~~~~~~ 141 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIPY 141 (166)
T ss_dssp --SCHHHHHHHHHHHTCCE
T ss_pred --cCHHHHHHHHHHcCCeE
Confidence 11234566677777543
No 77
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=96.78 E-value=0.00067 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=29.4
Q ss_pred cccceEEEe-cCeeEEEEcCCCCccccchhhhhcCC
Q 010156 482 IEPEEIRPM-GNYAVSITWPDGFSQVVCLILFHSKS 516 (516)
Q Consensus 482 i~~~~~~~~-~~~~l~i~w~Dgh~s~y~~~~L~~~~ 516 (516)
..|+++.+. ++..|.|.|+|||.+.|++.|||.++
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~c 42 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHTSRLTFEHLRVEC 42 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCEEEEEHHHHHHTC
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCEEEECHHHHHhhC
Confidence 357788876 45689999999999999999999864
No 78
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.76 E-value=0.0072 Score=61.90 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=48.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+...........+..+|.+++|+.+.........+.+..+...+++.+-+++|+++..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 567899999976433222233334568999999988766556667777778878888666888997653
No 79
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.75 E-value=0.0025 Score=64.08 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.++.++ +..|+||||++.++|..+++.|.+|++||++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3567766 88999999999999999999999999999985
No 80
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.73 E-value=0.011 Score=58.96 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=36.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
...+++++ |..|+||||+.-.|+..+...|.+|.++..|++.
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 34678887 9999999999999999998888999999999864
No 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.73 E-value=0.011 Score=58.17 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCChh----------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 010156 280 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~----------~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (516)
.+.++|+|||+-.... ......+..+|.+++|+.++.. +..+....++.+...+.+++ +|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCCC
Confidence 6789999998743211 1112223467999999888754 44443333777777777755 7789977531
Q ss_pred CCccccccCCchHHHHHHHhC
Q 010156 349 DGKRYYPFGRGSGSQVVQQFG 369 (516)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~g 369 (516)
... ......+++.+.++
T Consensus 137 ~~~----~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAK----NVLPLIDEIHKKHP 153 (308)
T ss_dssp SGG----GGHHHHHHHHHHCT
T ss_pred CHH----HHHHHHHHHHHhcc
Confidence 111 11234566677765
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.65 E-value=0.059 Score=46.48 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+..............+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc
Confidence 4558899998743322222222345688888877654 345555554444432 3555 45888998753
No 83
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.63 E-value=0.00088 Score=71.18 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+++++ +|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~~~~------~~ 152 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRDTRP------SI 152 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSCCSC------HH
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCcccc------HH
Confidence 57789999998754322333334567899999999877655666777888888888855 677997653211 11
Q ss_pred chHHHHHHHhCCCeE
Q 010156 359 GSGSQVVQQFGIPHL 373 (516)
Q Consensus 359 ~~~~~~~~~~g~~~l 373 (516)
..++++.+.++....
T Consensus 153 ~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 153 ELLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHhhCCCce
Confidence 357788888886433
No 84
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.61 E-value=0.011 Score=64.99 Aligned_cols=86 Identities=16% Similarity=0.035 Sum_probs=57.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..+.+.|+|||+...........+..+|.+++|+.+...........+..+.+.+++++ +|+|+++..... ..
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~------~~ 147 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD------LW 147 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------HH
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC------HH
Confidence 56889999998764433333333556899999998876555555666777777788865 778997643211 12
Q ss_pred chHHHHHHHhCCC
Q 010156 359 GSGSQVVQQFGIP 371 (516)
Q Consensus 359 ~~~~~~~~~~g~~ 371 (516)
...+++.+.++..
T Consensus 148 ~~~~~l~~~l~~~ 160 (691)
T 1dar_A 148 LVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567777777754
No 85
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.60 E-value=0.014 Score=62.23 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=66.6
Q ss_pred ccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 010156 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 277 ~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.|++|-+=|||||+-.....-....+.++|++++|+.+..--...+...++.+.+.+++++ +++|+.+.... ..
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~a--d~--- 169 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREAL--HP--- 169 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCC--CH---
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhc--ch---
Confidence 3578889999999865433333444678899999999988777888999999999999976 56699664322 11
Q ss_pred CCchHHHHHHHhCCCeE
Q 010156 357 GRGSGSQVVQQFGIPHL 373 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~~l 373 (516)
...++++.+.++...+
T Consensus 170 -~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 -LDVMADIEQHLQIECA 185 (548)
T ss_dssp -HHHHHHHHHHHTSEEE
T ss_pred -hHhhhhhhhhcCCceE
Confidence 2568889999986543
No 86
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.60 E-value=0.028 Score=51.00 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=49.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (516)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.....
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 145 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPER--- 145 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCcccc---
Confidence 4577899999874322112222244578888887765 34566666666666543 455 45888997753221
Q ss_pred cccCCchHHHHHHHhCC
Q 010156 354 YPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (516)
........++.+.++.
T Consensus 146 -~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 146 -EVQAVEGKKLAESWGA 161 (201)
T ss_dssp -CSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHhCC
Confidence 1122344566666664
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.57 E-value=0.019 Score=51.48 Aligned_cols=86 Identities=10% Similarity=0.174 Sum_probs=50.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..... .
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 144 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER----V 144 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----C
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccc----C
Confidence 4678999998743222222222446788888887654 3555566666666543 344 56888997753311 1
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+..+++.+.+|.
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 145 VPAEDGRRLADDLGF 159 (189)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345667777775
No 88
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.52 E-value=0.015 Score=63.85 Aligned_cols=86 Identities=19% Similarity=-0.012 Sum_probs=55.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..+.+.|+|||+...........+..+|.+++|+.+...........++.+.+.+.+++ +|+|+++..... ..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~------~~ 145 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN------FE 145 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------HH
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc------hH
Confidence 56789999998854322222233456899999998876544455566777777788765 678997643211 11
Q ss_pred chHHHHHHHhCCC
Q 010156 359 GSGSQVVQQFGIP 371 (516)
Q Consensus 359 ~~~~~~~~~~g~~ 371 (516)
...+++.+.++..
T Consensus 146 ~~~~~l~~~l~~~ 158 (693)
T 2xex_A 146 YSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567777877754
No 89
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.003 Score=57.03 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+++|.+. |..|+||||++..||..|...|.+|.++|.|.-
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4566665 999999999999999999999999999998753
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.47 E-value=0.025 Score=50.16 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.++ -+|.|+++..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 136 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE-EEEEECGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccc
Confidence 4678999998754322222222345788888877654 344455444444432 25564 5888998753
No 91
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.46 E-value=0.011 Score=55.28 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=30.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
|.+..|-.|+||||.+..++..++.+|++|+++-
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4555599999999999999999999999999994
No 92
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.049 Score=47.95 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++......
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 133 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERV---- 133 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccc----
Confidence 4578899998743322222222445788888887654 345555555555543 3344 558889977543211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+...++.+..+.+
T Consensus 134 ~~~~~~~~~~~~~~~~ 149 (180)
T 2g6b_A 134 VKREDGEKLAKEYGLP 149 (180)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123445566666654
No 93
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.39 E-value=0.04 Score=48.23 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~--~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+... ...+.......+|.+++|...+ ..++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 35688999986432 1111112233468888777654 45666666666666543 455 45888997754
No 94
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.01 Score=53.44 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCcccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+.. .+.+ +-+|.|+++.....
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---- 144 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEER---- 144 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc----
Confidence 4567899999763211112222244678888888765 3455566666666655 2444 55888997753221
Q ss_pred ccCCchHHHHHHHhCCC
Q 010156 355 PFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (516)
.......+.+.+.++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 145 VVPTEKGQLLAEQLGFD 161 (191)
T ss_dssp CSCHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHcCCe
Confidence 11223456667777753
No 95
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.30 E-value=0.017 Score=58.36 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEe-cccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N-~~~~ 346 (516)
..+.+.|+|||.-..........+..+|.+++|+. +......+.+.+..+...+++.+-+++| +++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 56779999998754332333333457899999998 6666666777778888888888667888 8764
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.30 E-value=0.0069 Score=60.81 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
..++.|+ |-.|+||||++.++|..++..|.+|+.||....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4577776 669999999999999999999999999998753
No 97
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.30 E-value=0.045 Score=48.36 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=45.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++.....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 127 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMER---- 127 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTC----
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcc----
Confidence 4668899998743211111122335788888877654 455555555444422 2455 45788997753221
Q ss_pred ccCCchHHHHHHHhCC
Q 010156 355 PFGRGSGSQVVQQFGI 370 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (516)
....+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 128 VISYEEGKALAESWNA 143 (181)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred eecHHHHHHHHHHhCC
Confidence 1122345566666654
No 98
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.29 E-value=0.011 Score=60.48 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+...........+..+|.+++|+.............+..+...+++.+-+++|+++..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999976322122222334568999999988775555666667777778888666889997753
No 99
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.28 E-value=0.017 Score=55.18 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=54.8
Q ss_pred CCCCEEEEcCCCCCChhh----------h--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQ----------L--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~----------~--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++++.|+|||+...... + .......+|.+++|+..+. ......+...+.+.+.+++ +|+|+++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 345789999987432211 1 1111146799999988765 3444566677777788754 77899764
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
..... .....+.+.+.+|.+++..
T Consensus 123 ~~~~~-----~~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 123 AEHRG-----ISIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHTT-----CEECHHHHHHHHCSCEEEC
T ss_pred CCcCC-----cHHHHHHHHHHcCCCEEEE
Confidence 32211 1124677888899876654
No 100
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.032 Score=48.29 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=38.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+..............+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 4678999998743322222222345788888877654 344555544444432 2455 45888998753
No 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.19 E-value=0.025 Score=49.12 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCcccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.+.+.|+|+|+..............+|.+++|...+.. ++..+...++.+.. .+.+ +-+|.|+++...... .
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~----~ 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSC----I 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCS----S
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccc----c
Confidence 46789999987321111111223467888888877553 45555555554433 2455 458889977533111 1
Q ss_pred CCchHHHHHHHhCCC
Q 010156 357 GRGSGSQVVQQFGIP 371 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~ 371 (516)
..+..+++.+.++.+
T Consensus 128 ~~~~~~~~~~~~~~~ 142 (168)
T 1z2a_A 128 KNEEAEGLAKRLKLR 142 (168)
T ss_dssp CHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHcCCe
Confidence 123455666666653
No 102
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.19 E-value=0.073 Score=47.47 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=39.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-.........+..+|.+++|...+.. .......+.+++... +.+ +-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcc
Confidence 456789999987433222222234568999999888743 222333333444332 445 45888997643
No 103
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.19 E-value=0.09 Score=46.07 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----CCCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...++.+... +.+.+-+|.|+++......
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-- 132 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-- 132 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS--
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc--
Confidence 36789999987532222222224467899999887653 555555555555442 5565678899987533111
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+.++.+
T Consensus 133 --~~~~~~~~~~~~~~~~ 148 (178)
T 2hxs_A 133 --IKPEKHLRFCQENGFS 148 (178)
T ss_dssp --SCHHHHHHHHHHHTCE
T ss_pred --cCHHHHHHHHHHcCCc
Confidence 1123455566666643
No 104
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.17 E-value=0.1 Score=46.64 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=40.0
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEeccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCH 345 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~ 345 (516)
+.+.|+|+|+...........+..+|.+++|...+.. +...+...+..+.. .+ ..+-+|+|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 7899999987322111222224467899999887654 45555555555554 34 44668889977
No 105
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.17 E-value=0.028 Score=55.98 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=82.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeeeccCCceEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (516)
.+.|.+++.-.++||||++..|...|.++|++|..+-.-..+. +.+.. . -++.+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~----li~~~-----------~----------gv~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGI----LIGAD-----------A----------GYVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHH----HTTCS-----------E----------ECCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceee----eeccC-----------C----------CCCCC-
Confidence 5789999999999999999999999999999998855332211 11000 0 00000
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCC-----------c
Q 010156 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQ-----------K 316 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~yD~VIID~pp~~~~~-----~~~~~~~~~~d~viiV~~p~-----------~ 316 (516)
....+.....++.+......++||++||-...|+... .+....-...|.+|+.-.|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 0011111222333322221379999999999776422 22233333567888876554 2
Q ss_pred -chHHHHHHHHHHHHcCCCCEEEEE-Eec
Q 010156 317 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 343 (516)
Q Consensus 317 -~s~~~~~~~~~~l~~~~~~~~gvV-~N~ 343 (516)
.++.....+++.+. +.+++|++ +|.
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45555556666555 68899999 996
No 106
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.15 E-value=0.0079 Score=53.99 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.4
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
|+++|+|+ |..|+||||+...|...+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 56778877 6889999999999999999999999999998754
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.14 E-value=0.029 Score=54.98 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~--------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
+.+.++|+|||+-... .......+..+|.+++|+..+..--..-..+++.+++. +.++ -+|+|+++.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECccc
Confidence 4567899999874321 11122234568999999887643222234556677765 6665 477899764
No 108
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.12 E-value=0.0051 Score=58.97 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
|++|.+. |-.|+||||++..|+..|...|..++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4566666 779999999999999999989999988888753
No 109
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.05 E-value=0.18 Score=44.97 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----------CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~-----------~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+.-.........+..+|.+++|+..+.. ++..+...+..+.+. +.++ -+|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF-LFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-EEEEECcCC
Confidence 567799999987432222222224467889998877654 566666655555443 5554 578899764
Q ss_pred c
Q 010156 347 D 347 (516)
Q Consensus 347 ~ 347 (516)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 3
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.03 E-value=0.12 Score=45.23 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=35.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|+|+.-............+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 34678999998743222222222345788888887654 344555544444432 3445 4578899775
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.02 E-value=0.048 Score=49.44 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=39.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+ ...++.+... +.++ -+|.|+++..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecHHhh
Confidence 4678999998742211122222345788888876554 355555 3455555543 5664 4888997753
No 112
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.02 E-value=0.096 Score=46.46 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .+...+...++.+.. .+.+ +-+|.|+++......
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~--- 144 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRA--- 144 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCC---
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccc---
Confidence 5678999998743222222233456788998887654 455555555555543 3455 458889977533111
Q ss_pred ccCCchHHHHHHHhCCC
Q 010156 355 PFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (516)
...+...++.+.++.+
T Consensus 145 -~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 145 -VKEEEARELAEKYGIP 160 (195)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHcCCC
Confidence 1123455666666654
No 113
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.99 E-value=0.079 Score=48.02 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 130 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRV---- 130 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCC----
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccc----
Confidence 4678999998743222222222446788998888754 3556666656555542 333 568889977543211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+...++.+..+.+
T Consensus 131 ~~~~~~~~~~~~~~~~ 146 (206)
T 2bcg_Y 131 VEYDVAKEFADANKMP 146 (206)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123445555565643
No 114
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.96 E-value=0.054 Score=47.05 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++...+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC-----
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc-----
Confidence 4578999998632111111112345688888887654 3555555555555442 344 55888997752211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~ 140 (170)
T 1g16_A 125 VTADQGEALAKELGIP 140 (170)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123455666666654
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.95 E-value=0.047 Score=47.96 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+..+.|+|||+..............+|.+++|...+..........++.+...+.+ +-+|.|+++.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 34577889986432111111223456888888876654444445556666666676 4578899764
No 116
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.07 Score=47.65 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~ 347 (516)
+++.+.|+|+|+.-.........+..+|.+++|+..+. .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 139 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLR 139 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcc
Confidence 35678999998743322222223446799999888765 346666555554433 2455 45888997653
No 117
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.93 E-value=0.073 Score=48.00 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+..............+|.+++|...+. .++..+...+..+.. .+.++ -+|.|+++......
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~--- 136 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLEDKRQ--- 136 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTCGGGCC---
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCcccccc---
Confidence 4578999998754332222222345788888877654 455555555444443 25564 58889977533111
Q ss_pred ccCCchHHHHHHHhCC
Q 010156 355 PFGRGSGSQVVQQFGI 370 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (516)
...+...++.+..+.
T Consensus 137 -~~~~~~~~~~~~~~~ 151 (206)
T 2bov_A 137 -VSVEEAKNRAEQWNV 151 (206)
T ss_dssp -SCHHHHHHHHHHHTC
T ss_pred -ccHHHHHHHHHHhCC
Confidence 112334555555554
No 118
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.91 E-value=0.21 Score=43.27 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 120 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDM 120 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCC
Confidence 4568999998743222222222346788888887654 356666555554433 2444 5688899764
No 119
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.87 E-value=0.076 Score=46.70 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... -..+-+|.|+++...... .
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~ 135 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK----V 135 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----S
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc----C
Confidence 4678999998743222222222445788988887654 34566666666665432 223568889977532211 1
Q ss_pred CCchHHHHHHHhCC
Q 010156 357 GRGSGSQVVQQFGI 370 (516)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (516)
..+...++.+..+.
T Consensus 136 ~~~~~~~~~~~~~~ 149 (181)
T 2efe_B 136 TAEDAQTYAQENGL 149 (181)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12344555556554
No 120
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.0079 Score=55.57 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++|+|+ |.+|+||||+..+|+..+... ++|.+|+.|++
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 3567777 799999999999999988655 89999999985
No 121
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.86 E-value=0.0071 Score=54.42 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
|++|.|. |-.|+||||++..|+..|...|+++..+|.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4567766 7899999999999999999889999999754
No 122
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.79 E-value=0.073 Score=46.71 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH----HcCCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF----SKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l----~~~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+ ...+.+ +-+|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 3568899998743211111111335688888877655 3455555544444 223555 45888997754
No 123
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.74 E-value=0.013 Score=53.64 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3577777 8899999999999999998888899999988654
No 124
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.73 E-value=0.048 Score=46.93 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~-------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+..+.|+|||+.... ..........+|.+++|+..+..-........+.+...+.+ +-+|.|+++.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 346789999774331 11111223467888888877653222223455555555666 4578899764
No 125
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.64 E-value=0.097 Score=46.73 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++......
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~---- 138 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKV---- 138 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCC----
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccc----
Confidence 3578999998743221222222446788888887654 3445555555555443 344 457889977533211
Q ss_pred cCCchHHHHHHHhCCCeE
Q 010156 356 FGRGSGSQVVQQFGIPHL 373 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~~l 373 (516)
......+++.+.++.+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 139 VDYTTAKEFADSLGIPFL 156 (196)
T ss_dssp SCHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHcCCcEE
Confidence 122345667777775433
No 126
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.11 Score=47.22 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=47.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++......
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~---- 148 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERRE---- 148 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccc----
Confidence 3568899998743222222223446788888887654 3555555555555432 333 557889987532111
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+..+.+
T Consensus 149 v~~~~~~~~~~~~~~~ 164 (201)
T 2ew1_A 149 VSQQRAEEFSEAQDMY 164 (201)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCE
Confidence 1123344555555543
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.013 Score=54.91 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.++.++ |..|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 466666 889999999999999999999999999998863
No 128
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.61 E-value=0.53 Score=40.32 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCC
Confidence 45678999998743222222222456788888887654 4566666555554332 444 5688899765
No 129
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.61 E-value=0.086 Score=46.13 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .+...+...+..+.. .+.+ +-+|.|+++......
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---- 137 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRD---- 137 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccc----
Confidence 4578999998742211222222446788888887654 344555555554443 2344 568889977532111
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+...++.+..+.
T Consensus 138 ~~~~~~~~~~~~~~~ 152 (179)
T 1z0f_A 138 VTYEEAKQFAEENGL 152 (179)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112344555555554
No 130
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.1 Score=46.82 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+... ..........+|.+++|...+. .++..+...++.+.. .+.++ -+|.|+++......
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~--- 149 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADLDHSRQ--- 149 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGGGGGCC---
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECcccccccc---
Confidence 46788999987543 2222222345788888887754 455555554444433 35554 58889977543211
Q ss_pred ccCCchHHHHHHHhCC
Q 010156 355 PFGRGSGSQVVQQFGI 370 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (516)
.......++.+.++.
T Consensus 150 -v~~~~~~~~~~~~~~ 164 (196)
T 2atv_A 150 -VSTEEGEKLATELAC 164 (196)
T ss_dssp -SCHHHHHHHHHHHTS
T ss_pred -cCHHHHHHHHHHhCC
Confidence 112334555555554
No 131
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.49 E-value=0.2 Score=44.99 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=50.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 130 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER----V 130 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC----C
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc----c
Confidence 4578999998743222222223445788888888754 3555566665555542 444 45888997753321 1
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+...++.+.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 131 VSSERGRQLADHLGFE 146 (203)
T ss_dssp SCHHHHHHHHHHHTCE
T ss_pred cCHHHHHHHHHHCCCe
Confidence 1223456677777753
No 132
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.44 E-value=0.071 Score=46.22 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.+.+.|+|+|+.-............+|.+++|...+. .+...+...++.+...+ ...+-+|.|+++...... .
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----v 129 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----V 129 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----S
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc----c
Confidence 4678999998742222222222346788888887654 35556666666665432 224567889976532111 1
Q ss_pred CCchHHHHHHHhCC
Q 010156 357 GRGSGSQVVQQFGI 370 (516)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (516)
..+....+.+..+.
T Consensus 130 ~~~~~~~~~~~~~~ 143 (170)
T 1z0j_A 130 MERDAKDYADSIHA 143 (170)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12334555555554
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.42 E-value=0.12 Score=49.67 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCCCEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~------------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
.++.+.|+|||+...... ........+|.+++|+.... ..........+.+.+.+++ +|+|+++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 356789999987432110 01111236788999888765 3444555666666688854 77899774
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 010156 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
...... ....+.+.+.+|.+++..
T Consensus 125 ~~~~~~-----~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 125 AEKQNI-----RIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTTE-----EECHHHHHHHHTSCEEEC
T ss_pred hhhhhH-----HHHHHHHHHhcCCCEEEE
Confidence 321110 124678888888876654
No 134
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.39 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 46778999998742211111222346788998887654 456666655554432 3455 45888997643
No 135
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.092 Score=47.05 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.+. +. .+-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~-piiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENI-VMAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTC-EEEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-cEEEEEECcccc
Confidence 35678999998743222222222446788888887654 4556666666666543 33 356888998753
No 136
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.37 E-value=0.093 Score=45.38 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.++|+|+..............+|.+++|...+ ..++..+...+..+.+. +.+ +-+|.|+++.....
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 122 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR---- 122 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC----
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc----
Confidence 456788899764332222222234567787776654 44556666666655543 455 45788997754321
Q ss_pred ccCCchHHHHHHHhCC
Q 010156 355 PFGRGSGSQVVQQFGI 370 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (516)
....+..+.+.+..+.
T Consensus 123 ~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 123 EVSVDEGRACAVVFDC 138 (166)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHhCC
Confidence 1122334556666664
No 137
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.62 Score=41.14 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
+.+.+.|+|+|+.-............+|.+++|...+.. ++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVK 130 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCc
Confidence 346789999987432212222224467899998887554 56777666665544 2444 56888997643
No 138
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.34 E-value=0.15 Score=44.15 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++......
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---- 128 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERH---- 128 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCC----
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccc----
Confidence 4568899998743222222222345788888887654 455555555555543 2344 458889977543211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+..+.+
T Consensus 129 ~~~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 129 VSIQEAESYAESVGAK 144 (170)
T ss_dssp SCHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123455566666643
No 139
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.18 Score=44.51 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++...+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc----
Confidence 3457789998743221121122335688888877654 345555555555543 2455 45788997654221
Q ss_pred ccCCchHHHHHHHhCCCe
Q 010156 355 PFGRGSGSQVVQQFGIPH 372 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~ 372 (516)
...+..+++.+.++.++
T Consensus 126 -~~~~~~~~~~~~~~~~~ 142 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIPF 142 (189)
T ss_dssp -SCHHHHHHHHHHHTCCE
T ss_pred -cCHHHHHHHHHHcCCeE
Confidence 12245667777777643
No 140
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.32 E-value=0.018 Score=52.98 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+++++ +.+|+||||++.++|. ..|.+|+++|.+.+
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 456665 9999999999999998 56889999999863
No 141
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.31 E-value=0.0091 Score=58.28 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..+|+++ |-.|+||||+|..|+..|...|.++.+||+|-..
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4578887 7899999999999999998888899999999765
No 142
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.29 E-value=0.025 Score=55.54 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=31.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC--CCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllID~D~ 212 (516)
++. ..+-.|+||||++.+++..+++. |.+|+.||+..
T Consensus 30 ite-I~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEE-EEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEE-EECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 444 45789999999999999999886 88999999864
No 143
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.23 E-value=0.23 Score=44.20 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++......
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 143 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRD---- 143 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccc----
Confidence 4568999998632111111122346788888887654 3555555655555542 344 458889977532111
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+..+++.+..+.
T Consensus 144 v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 144 VKREEGEAFAREHGL 158 (191)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112345556666664
No 144
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.22 E-value=0.12 Score=46.61 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 4568899998754322222222345788999887654 4555555555555542 455 4578899775
No 145
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.22 E-value=0.018 Score=56.76 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.++.+ .+..|+||||++.++|..++..|.+|+.+++..
T Consensus 69 ~l~li-~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLI-AARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34555 499999999999999999999999999999884
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.21 E-value=0.033 Score=57.87 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCC-----hh---hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTG-----DI---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~-----~~---~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
....+.|+|||+-.. .. ......+..+|.+++|+.....-...-..+.+.+++.+.+++ +|+|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 456789999976211 00 111122345788888887655333344567777777777754 77799764
No 147
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.087 Score=45.69 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|||+...........+..+|.+++|...+.. ++..+...++.+.+. +.+ +-+|.|+++..
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 46789999987543222222223457888888776543 444445555444432 455 45888997753
No 148
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.19 E-value=0.084 Score=45.68 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 5678999998743222222222445788888887754 35566666655554432 22355777998753
No 149
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.17 E-value=0.088 Score=46.85 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=27.0
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
++.+++|+..............+.+...+.+++ +|.|+++.
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl 145 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDK 145 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 367777877655433444466677777777754 77899764
No 150
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.16 E-value=0.12 Score=45.65 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH----cCCCCEEEEEEecccccCCCccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~----~~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
+.+-|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+. ..+.++ -+|.|+++..... .
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~----~ 140 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLMHLR----K 140 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCE-EEEEECTTCSTTC----C
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECCCchhcc----C
Confidence 4466799987422111111123357888888776543 4555555544443 245564 4888997753311 1
Q ss_pred cCCchHHHHHHHhCCCeE
Q 010156 356 FGRGSGSQVVQQFGIPHL 373 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~~l 373 (516)
...+..+++.+.++.+++
T Consensus 141 v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 141 VTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp SCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHhCCeEE
Confidence 222446677777775533
No 151
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.16 E-value=0.015 Score=55.34 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHH-----CCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-----~G~rVllID~D~~~ 214 (516)
.+.+|+++ |-.|+||||+|..||..|.. .|++|+++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34577777 88999999999999988763 36789999999644
No 152
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.10 E-value=0.078 Score=47.59 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=40.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4678999998743222222222345788998887654 3555555555555543 344 56888998753
No 153
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.10 E-value=0.029 Score=60.90 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=64.6
Q ss_pred ccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 010156 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (516)
Q Consensus 277 ~~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (516)
.|++|-+-|||||+...........+..+|++++|+....--...+...++.+.+.+++.+ +++|+.+.....
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~------ 135 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID------ 135 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC------
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC------
Confidence 3577889999999876655444555778999999998876555567888999999899976 667996543211
Q ss_pred CCchHHHHHHHhCCCe
Q 010156 357 GRGSGSQVVQQFGIPH 372 (516)
Q Consensus 357 ~~~~~~~~~~~~g~~~ 372 (516)
-....+++.+.++...
T Consensus 136 ~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 136 LSTVYQDIKEKLSAEI 151 (638)
T ss_dssp SHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 1246778888887544
No 154
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.07 E-value=0.017 Score=51.55 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
||++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 467899995 88999999999999999999988888877754
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.07 E-value=0.11 Score=50.65 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred CCCCEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~---------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
+.+.++++|||+-..... .....+..+|.+++|+.....+- ....+++.+...+.|++ +|+|+++..
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~i-lvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVI-LAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCEE-EEEESTTTC
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 455688999975320110 01112334677777777654332 23455666776677765 566997643
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.06 E-value=0.024 Score=52.48 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+++++ |..|+||||++..+|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 467776 889999999999999998888889999998763
No 157
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.04 E-value=0.02 Score=52.93 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=33.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
..+|+|+ |.+||||||+..+|+..+... .++..|+.|++
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 3567777 779999999999999987655 78999999985
No 158
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.01 E-value=0.24 Score=54.38 Aligned_cols=88 Identities=19% Similarity=0.047 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
++|-+=|||||+......-...++..+|++++|+....--...+..+++.+.+.+++.+ +++|+.+..... -.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~------~~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGAN------FL 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCC------HH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCcc------HH
Confidence 35667899999876654444455677899999999877666778889999988899965 667996532211 12
Q ss_pred chHHHHHHHhCCCeE
Q 010156 359 GSGSQVVQQFGIPHL 373 (516)
Q Consensus 359 ~~~~~~~~~~g~~~l 373 (516)
..++++.+.++...+
T Consensus 156 ~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 156 RVVEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHHHCSCEE
T ss_pred HHHHHhhhhccccee
Confidence 467888888885443
No 159
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.14 Score=45.59 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (516)
.+.+.|+|||+.-.........+..+|.+++|..... .++..+...++.+.... -..+-+|.|+++.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 4678999998742211112222446788888887654 35555666666665431 2235688899775
No 160
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.17 Score=45.89 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|||+.-.........+..+|.+++|+..+. .++..+...+..+... +.+ +-+|.|+++...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCC-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc-----
Confidence 3678999998732211111222446788888888754 3455555555555432 344 55888998753211
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+.++.+
T Consensus 142 ~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 VTADQGEALAKELGIP 157 (213)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCE
Confidence 1123455666667754
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.90 E-value=0.1 Score=54.57 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=45.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+--.........+..+|.+++|+..+... .......+..+...+.+.+-+|+|+++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 5678999999874332333333455689999998876642 13455566666777776566889998754
No 162
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.88 E-value=0.34 Score=42.81 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~ 347 (516)
+.+.+.|+|+|+..............+|.+++|...+. .++..+...+..+ .. .+.+ +-+|.|+++..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLL 130 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcc
Confidence 35678899998643222222222446788988887654 4566665555444 22 2455 45888997643
No 163
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.87 E-value=0.11 Score=56.68 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..+.+.|+|||+...........+..+|.+++|+.+..-........++.+...+++++ +|+|+++.. .. ..
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~------~~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD------YY 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC------HH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh------HH
Confidence 45678999998643322222333456799999988766545556677777777788876 678997754 11 12
Q ss_pred chHHHHHHHhC
Q 010156 359 GSGSQVVQQFG 369 (516)
Q Consensus 359 ~~~~~~~~~~g 369 (516)
...+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45677888887
No 164
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.87 E-value=0.33 Score=50.74 Aligned_cols=123 Identities=7% Similarity=-0.017 Sum_probs=63.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
+.+.+.|+|||+.-.........+..+|.+++|+..+. .++..+...+..+.+ .+.+ +-+|.|+++....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~---- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA---- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC----
Confidence 45789999998743222222223456799999887654 456666655555433 2444 5588899764321
Q ss_pred cccCCchHHHHHHHhCCCeEEecCCChhHhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Q 010156 354 YPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVST 425 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pl~~~~p~s~~~~~~~~La~~i~~~~~~~~~~~~~ 425 (516)
...+++.+.++..... ..+.++++.. ......+.++.+.|.+.+.+.....++
T Consensus 439 -----~~~~~~~~~~~~~~~~------------~~~~~~~~~S--A~~g~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 439 -----MKPHEIQEKLGLTRIR------------DRNWYVQPSC--ATSGDGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp -----CCHHHHHHHTTCTTCC------------SSCEEEEECB--TTTTBTHHHHHHHHHHHCC--------
T ss_pred -----CCHHHHHHHhchhhhh------------cCCeEEEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 2356667776643221 1222333331 222334666777777666555555444
No 165
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.87 E-value=0.032 Score=49.75 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+++|+++ |-.|+||||++..|+..|...|.+++.+|.|.-.
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4577776 8899999999999999998889999988877543
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.87 E-value=0.026 Score=56.18 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=33.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++.+ .+..|+||||++.++|..++..|.+|+++.+..
T Consensus 48 LiiI-aG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 48 LVII-GARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp EEEE-EECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4555 499999999999999999999999999999875
No 167
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.85 E-value=0.36 Score=42.95 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=39.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~ 143 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI-VVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTC-EEEEEEECGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-eEEEEEECCCcc
Confidence 4568899998743221222222446788888877654 3445555556555543 33 356888997753
No 168
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.85 E-value=0.22 Score=44.42 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCcc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKR 352 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~~~~~~ 352 (516)
.+.+.|+|+|+.-....+. ..+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++......
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 144 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQ- 144 (187)
T ss_dssp EEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCS-
T ss_pred EEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCc-
Confidence 4567889998642111111 1234578888887765 3466666665555543 2555 458889987532111
Q ss_pred ccccCCchHHHHHHHhCC
Q 010156 353 YYPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~ 370 (516)
...+...++.+.++.
T Consensus 145 ---v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 145 ---VTKAEGVALAGRFGC 159 (187)
T ss_dssp ---SCHHHHHHHHHHHTC
T ss_pred ---cCHHHHHHHHHHcCC
Confidence 122345566666664
No 169
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.82 E-value=0.24 Score=43.65 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=39.3
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~ 347 (516)
+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 568899998743222222222445788888887654 345555555544433 2444 56888998753
No 170
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.13 Score=46.71 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|||+.-............+|.+++|...+. .++..+ ...+..+... +.++ -+|.|+++..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI-ILVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhhh
Confidence 4678999998743222222222345788888877654 355555 3455555543 5564 4888997653
No 171
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.80 E-value=0.19 Score=43.55 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~-~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.+.+.++|+|+.-.... +.......+|.+++|...+. .++..+...+..+... +.++ -+|.|+++.....
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~--- 125 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLARSR--- 125 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCGGGC---
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE-EEEeeCcchhhcc---
Confidence 45678999976432111 11111234688888877654 3455555555554432 4554 4788997753211
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
....+..+++.+.++.+
T Consensus 126 -~~~~~~~~~~~~~~~~~ 142 (169)
T 3q85_A 126 -EVSLEEGRHLAGTLSCK 142 (169)
T ss_dssp -CSCHHHHHHHHHHTTCE
T ss_pred -cCCHHHHHHHHHHcCCc
Confidence 11223455666666653
No 172
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.80 E-value=0.022 Score=58.97 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+.+ .+..|+||||++.++|..++..|.+|+++.+....
T Consensus 199 liiI-aG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 199 FVLI-AARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp EEEE-EECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred EEEE-EeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 4444 59999999999999999999999999999988643
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.79 E-value=0.036 Score=50.49 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=34.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.+|++. |-.|+||||++..||..|...|..+..+|.|.-
T Consensus 24 ~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45677777 899999999999999999888887788998754
No 174
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.76 E-value=0.48 Score=41.74 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=40.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
+.+.+.|+|||+..............+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 132 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLP 132 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCC
Confidence 34678999998642111111222345788888887654 456666665555433 2344 56888997643
No 175
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.74 E-value=0.29 Score=44.17 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=48.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.+ .+.+ +-+|.|+++......
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~---- 151 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELRE---- 151 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccc----
Confidence 3678999998743222222223456789999888765 355556566655554 2344 457889977532111
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+...++.+.++.
T Consensus 152 v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 152 VSLAEAQSLAEHYDI 166 (201)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112345556666664
No 176
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.74 E-value=0.13 Score=44.96 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCccccccC
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFG 357 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (516)
+.+.|+|+|+.-............+|.+++|...+. .+...+...+..+... +.+ +-+|.|+++..... ...
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~----~~~ 132 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERK----VVE 132 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGC----CSC
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhc----ccC
Confidence 578999998732111111222345788888877654 4555555555555442 244 45888997643221 112
Q ss_pred CchHHHHHHHhCCCe
Q 010156 358 RGSGSQVVQQFGIPH 372 (516)
Q Consensus 358 ~~~~~~~~~~~g~~~ 372 (516)
......+.+..+.++
T Consensus 133 ~~~~~~~~~~~~~~~ 147 (181)
T 3tw8_B 133 TEDAYKFAGQMGIQL 147 (181)
T ss_dssp HHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCeE
Confidence 234556666666543
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.71 E-value=0.45 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLA 195 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA 195 (516)
..|+++ |..|+||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 467777 899999999987665
No 178
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.66 E-value=0.34 Score=45.99 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 010156 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (516)
..+.+.|+|+|+...... ........+|.+++|+..+.. .........+.+.+.++ -+|+||++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pv-ilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKV-ILAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCE-EEEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCE-EEEEECcCCCCcc
Confidence 356789999987432111 111111357889999887654 23334556666677775 4788997753211
Q ss_pred ccccccCCchHHHHHHHhCCCeEEe
Q 010156 351 KRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
. .. ...+.+.+.+|.+++..
T Consensus 127 ~----i~-~~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 127 G----MK-IDRYELQKHLGIPVVFT 146 (258)
T ss_dssp T----CC-BCHHHHHHHHCSCEEEC
T ss_pred c----hH-HHHHHHHHHcCCCEEEE
Confidence 1 11 23678888899876654
No 179
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.63 E-value=0.12 Score=49.53 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCEEEEEEecccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 349 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~-~~~~gvV~N~~~~~~~ 349 (516)
.++.+.|+|||+...... ........+|.+++|+..... .........+.+.+ .++ -+|+|+++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNI-ILVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSE-EEEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCE-EEEEEChhcCcc
Confidence 455689999987432111 111111347888888876653 33334444455556 665 488899774321
Q ss_pred CccccccCCchHHHHHHHhCCCeEEe
Q 010156 350 GKRYYPFGRGSGSQVVQQFGIPHLFD 375 (516)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (516)
.. . ....+.+.+.+|.+++..
T Consensus 125 ~~----~-~~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 125 KG----A-KIDIKKMRKELGVPVIPT 145 (271)
T ss_dssp HT----C-CCCHHHHHHHHSSCEEEC
T ss_pred cc----c-HHHHHHHHHHcCCcEEEE
Confidence 11 1 123778888999876644
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.62 E-value=0.037 Score=50.27 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=31.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.+.++ |..|+||||++..++..+...|.+|+.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 356665 8999999999999999999989999988764
No 181
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.2 Score=43.15 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+...........+..+|.+++|...+.. +...+...+..+.+. +.+ +-+|.|+++....... ..
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~ 128 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGE-RK 128 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCC-CC
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccc-cC
Confidence 45689999987432222222224467888888876553 555665555555432 333 5588899875432110 01
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+..+++.+..+.
T Consensus 129 v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 129 VAREEGEKLAEEKGL 143 (170)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 122334555555664
No 182
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.54 E-value=0.15 Score=46.71 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCChh-----------h---hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecc
Q 010156 279 GELDYLVIDMPPGTGDI-----------Q---LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~-----------~---~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 344 (516)
..+.+.|+|||+ .+.. . ........+|.+++|+.............++.+...+.+++ +|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence 567899999986 3221 0 01111122567888887765333444566777777777754 788997
Q ss_pred cc
Q 010156 345 HF 346 (516)
Q Consensus 345 ~~ 346 (516)
+.
T Consensus 155 Dl 156 (223)
T 4dhe_A 155 DK 156 (223)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 183
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.52 E-value=0.31 Score=43.79 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~-~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+++...... +.......+|.+++|...+. .++..+...+..+.. .+.++ -+|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeechhcc
Confidence 45678889976432211 11111234688888877653 455556665555543 24554 4788997653
No 184
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.49 E-value=0.44 Score=42.58 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=45.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (516)
..+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNA---- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCC----
Confidence 45678999998742211111122346788988887654 4566666665555432 444 5688899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 010156 354 YPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (516)
...+++.+.++.
T Consensus 146 -----~~~~~i~~~~~~ 157 (192)
T 2b6h_A 146 -----MPVSELTDKLGL 157 (192)
T ss_dssp -----CCHHHHHHHTTG
T ss_pred -----CCHHHHHHHhCc
Confidence 224566666653
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.45 E-value=0.032 Score=51.29 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=34.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~ 212 (516)
.+++|.+. |-.|+||||++..|+..|. ..|.++..+|.|.
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34577776 8899999999999999998 7799999998764
No 186
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.44 E-value=0.43 Score=42.22 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||+.-............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCC
Confidence 34678999997642211111112345788888887654 3566666555544332 344 5688899764
No 187
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.42 E-value=0.12 Score=48.78 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=36.8
Q ss_pred CCCCEEEEcCCCCCChhh---------hh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------CCCEEEEE
Q 010156 279 GELDYLVIDMPPGTGDIQ---------LT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 340 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~---------~~---~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~------~~~~~gvV 340 (516)
.+..++|+|||+-..... +. ......+|.+++|+..+.... .....++.+.+. +. .+-++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~-~iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKW-MVIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGG-EEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhcc-EEEEE
Confidence 456789999987422100 00 011246788899988765432 223444444432 33 35577
Q ss_pred Eeccccc
Q 010156 341 ENMCHFD 347 (516)
Q Consensus 341 ~N~~~~~ 347 (516)
.|+.+..
T Consensus 146 ~nK~Dl~ 152 (247)
T 3lxw_A 146 TRKEDLA 152 (247)
T ss_dssp ECGGGGT
T ss_pred EchHhcC
Confidence 8987653
No 188
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.40 E-value=0.03 Score=49.94 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~ 210 (516)
+.+.++ |..|+||||++..++..+. ..|.+|+.+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 467666 8999999999999999997 77888877654
No 189
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.40 E-value=0.16 Score=52.23 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=48.2
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 278 ~~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
+..+.+.|+|||+...........+..+|.+++|+.....++. ...+.+..+...+++.+-+++|+++..
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 3578899999987544333333445578999999998876554 445556666667776556888997754
No 190
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.34 E-value=0.074 Score=54.87 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=36.1
Q ss_pred CCCCEEEEcCCCCCC-------h-hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTG-------D-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~-------~-~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+..+.|+|||+-.. . .......+..+|.+++|+.....-...-....+.+++.+.++ -+|+|+++..
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pv-ilv~NK~D~~ 124 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDNT 124 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCE-EEEEECCCC-
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccCc
Confidence 456789999977421 0 011122234578888887765421122245566677777775 4788997643
No 191
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.26 E-value=0.2 Score=44.78 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++....... .
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--~ 146 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD--D 146 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT--C
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC--c
Confidence 4567899998642221222222446788888877654 344443 3444455433 344 5588899875432111 1
Q ss_pred cCCchHHHHHHHhCCC
Q 010156 356 FGRGSGSQVVQQFGIP 371 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (516)
...+..+++.+.++.+
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 147 VTKQEGDDLCQKLGCV 162 (194)
T ss_dssp CCHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHhcCCC
Confidence 2234566777777765
No 192
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.22 E-value=0.67 Score=40.52 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+..............+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQ 131 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTS
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCC
Confidence 4568899998643211111222345688888877643 456666666555543 2344 5688899764
No 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.19 E-value=0.27 Score=44.35 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=38.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 3678999997631110111112345788888887654 345555555555543 2444 56888998753
No 194
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.18 E-value=0.31 Score=42.95 Aligned_cols=67 Identities=7% Similarity=-0.019 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCc
Confidence 346789999987422111222224467888888876553 66666665555543 2444 5688899764
No 195
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.15 E-value=0.61 Score=40.50 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=38.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+.. +...+...++.+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccc
Confidence 35689999987432222222223457888888766543 44444444444432 3445 45788997753
No 196
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.15 E-value=0.062 Score=48.14 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+|++. |-.|+||||++..|+..|...|..|+-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 88999999999999999988898876554
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.05 E-value=0.061 Score=52.19 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~ 212 (516)
.+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 36 ~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 467776 899999999999999999876 88999998875
No 198
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.04 E-value=0.032 Score=50.77 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.3
Q ss_pred ccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 169 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+..++++|++. |-.|+||||++..|+..+ | ..++|.|..
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 44556778777 889999999999999887 4 346777753
No 199
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.48 Score=43.44 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-....+.......+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3578999998743221222222445788888887654 3556666656555543 333 56788997753
No 200
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.00 E-value=0.26 Score=52.77 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 359 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (516)
.|.+.|+|||+...........+..+|.+++|+....-........+..+...+++ +-+|+|+++..... ...
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~------~~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD------VDR 144 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC------HHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC------HHH
Confidence 47788999987543322223335678999999887654333444445555566787 45778997643211 012
Q ss_pred hHHHHHHHhCC
Q 010156 360 SGSQVVQQFGI 370 (516)
Q Consensus 360 ~~~~~~~~~g~ 370 (516)
..+++.+.+|.
T Consensus 145 v~~el~~~lg~ 155 (600)
T 2ywe_A 145 VKKQIEEVLGL 155 (600)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhhCC
Confidence 34556666654
No 201
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.99 E-value=0.036 Score=49.59 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++|+|. |-.|+||||++..||..|...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 466665 8899999999999999998888656666654
No 202
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.99 E-value=0.14 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLA 195 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA 195 (516)
..|+|+ |..|+||||+.-.|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 467777 899999999987764
No 203
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.98 E-value=0.27 Score=42.82 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 3568999998743222222222346788888887754 345555555554443 2444 55888997753
No 204
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.95 E-value=0.47 Score=42.05 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=47.4
Q ss_pred CCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~-~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.+.+.|+|+|+.-... ......+..+|.+++|...+. .++..+...++.+.+ .+.+ +-+|.|+++.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 143 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAI--- 143 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc---
Confidence 4578999998632111 111122346788888887654 344445444444432 3455 45888997753221
Q ss_pred cccCCchHHHHHHHhCCCe
Q 010156 354 YPFGRGSGSQVVQQFGIPH 372 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~ 372 (516)
....+..+++.+.++.++
T Consensus 144 -~v~~~~~~~~~~~~~~~~ 161 (189)
T 1z06_A 144 -QVPTDLAQKFADTHSMPL 161 (189)
T ss_dssp -CSCHHHHHHHHHHTTCCE
T ss_pred -eeCHHHHHHHHHHcCCEE
Confidence 112234556666666543
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.91 E-value=0.056 Score=50.56 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~ 213 (516)
+.+..+..|+|||+++.++|...+ +.|.+|++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 444459999999999999998754 56899999998853
No 206
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.90 E-value=0.47 Score=42.30 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
+++.+.++|+|+..............+|.+++|...+.. ++..+...+..+.+ .+.+ +-+|.|+++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 346788999986422111111223467888888876554 56666665555533 3455 4588899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 010156 354 YPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (516)
...+++.+.++.
T Consensus 140 -----~~~~~~~~~~~~ 151 (190)
T 1m2o_B 140 -----VSEAELRSALGL 151 (190)
T ss_dssp -----CCHHHHHHHTTC
T ss_pred -----CCHHHHHHHhCC
Confidence 124566666654
No 207
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=93.88 E-value=0.17 Score=51.44 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=46.3
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.|+|||..-............+|.+++|+...... .......+..+...+.+.+-+|+|+++.
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 57899999875333333333455689999998887653 6667777777777676556688899764
No 208
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.59 Score=41.51 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+. ..+..+.+. +.++ -+|.|+++..
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 135 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDLR 135 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTST
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhc
Confidence 4568899998743222222222345788888887654 3455554 455555543 5554 5888997653
No 209
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.81 E-value=0.082 Score=63.00 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..++.|+ +..|+||||++.++|...++.|.+|+.||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4566665 9999999999999999999999999999998643
No 210
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.79 E-value=0.62 Score=42.48 Aligned_cols=68 Identities=4% Similarity=-0.071 Sum_probs=40.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHH-HHHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~-~~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++.. +...++.+... +.+ +-+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 45678899998742211122222446788888887654 34555 35555666543 444 45788997754
No 211
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.77 E-value=0.053 Score=57.69 Aligned_cols=39 Identities=36% Similarity=0.365 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+|.++ |..|+||||++..|+..|...|+++.++|.|.
T Consensus 372 ~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 4566666 88999999999999999999999999999885
No 212
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.76 E-value=0.16 Score=55.75 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCChh----hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 281 LDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 281 yD~VIID~pp~~~~~----~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
+++.|||||+ ++.. ......+..+|.+++|+.++.. +..+...+.+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999986 2221 1122223458999999887653 333433333455555666 56788997753
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.74 E-value=0.042 Score=48.72 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++|. .+|-.|+||||++..||..| |...+.+|.|.
T Consensus 4 ~~i~-l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMII-LNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp CEEE-EECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred eEEE-EECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 3454 55999999999999988776 45566667763
No 214
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.73 E-value=0.095 Score=47.61 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
++++.++ |--|+||||.+..+|..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555555 88899999999999999999999999995
No 215
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.72 E-value=0.034 Score=48.97 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++|.++ |-.|+||||++..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 45678777 789999999999998877 44 3677773
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.71 E-value=0.083 Score=47.47 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.|++. |-.|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 46666 888999999999999999999999976543
No 217
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.71 E-value=0.65 Score=41.52 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=39.5
Q ss_pred CCCCEEEEcCCCCCChhhhh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc-----CCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK-----LKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~---~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~-----~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|+|+.-...... ......+|.+++|...+.........+.+.+.+ .+.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecccc
Confidence 45789999998753211111 122446799999988777533444444344333 2444 4588899764
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.67 E-value=0.064 Score=55.52 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~ 212 (516)
.++.++ +..|+||||++.++|...+. .|.+|+++++..
T Consensus 201 ~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 201 SLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 355554 99999999999999999997 589999999974
No 219
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.66 E-value=0.31 Score=48.08 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHH-HcC---CCCEEEEEEecccccCCCccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL---KVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~~~~~~~~ 353 (516)
..+.+.|+|||+.-.........+..+|.+++|+..+ ..++..+...+..+ ... +.+ +-+|.|+++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~---- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA---- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc----
Confidence 4567899999874322111112234568888887765 44565555544443 322 444 5588899764321
Q ss_pred cccCCchHHHHHHHhCCC
Q 010156 354 YPFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (516)
...+++.+.++..
T Consensus 282 -----~~~~~i~~~~~~~ 294 (329)
T 3o47_A 282 -----MNAAEITDKLGLH 294 (329)
T ss_dssp -----CCHHHHHHHHTCT
T ss_pred -----cCHHHHHHHhchh
Confidence 2356677777643
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.65 E-value=0.09 Score=48.63 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+.++ |..|+||||++..+|..+...|.++..++++.
T Consensus 53 ~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 356665 88999999999999999999999999998854
No 221
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.65 E-value=0.35 Score=49.75 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 010156 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (516)
.+..+.|+|||+-... .......+..+|.+++|+.....-...-..+.+++++.+.+++ +|+|+++
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCC
Confidence 3445788999773211 0111223456788888887643211111344555665567754 7889965
No 222
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.79 Score=41.97 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~-~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 347 (516)
.+.++++|++...+. ..+.......++.+++|..- +..++..+......+.+. +.+ +-+|.|+++..
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 345678888653321 11111112235677776554 445666666665555532 455 45888998753
No 223
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.23 Score=44.38 Aligned_cols=85 Identities=11% Similarity=0.131 Sum_probs=45.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-----CCCCEEEEEEecccccCCCccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRY 353 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-----~~~~~~gvV~N~~~~~~~~~~~ 353 (516)
.+.+.|+|||+...........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++...+.
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~--- 130 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQRE--- 130 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCS---
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccc---
Confidence 4568999998743222222222345788888877654 344544444444433 1445 46888997754311
Q ss_pred cccCCchHHHHHHHhCC
Q 010156 354 YPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (516)
........+.+.++.
T Consensus 131 --~~~~~~~~~~~~~~~ 145 (199)
T 2gf0_A 131 --VDTREAQAVAQEWKC 145 (199)
T ss_dssp --SCHHHHHHHHHHHTC
T ss_pred --cCHHHHHHHHHHhCC
Confidence 111234455555554
No 224
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.53 E-value=0.047 Score=57.48 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~~ 213 (516)
.++ +..+..|+||||++.++|..++.. |.+|+++++...
T Consensus 243 ~l~-li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 243 EVI-MVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CEE-EEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred eEE-EEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 345 445999999999999999999987 999999999763
No 225
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.31 Score=43.30 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=16.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLA 195 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA 195 (516)
..|+|+ |..|+||||+...|.
T Consensus 49 ~~i~vv-G~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIA-GPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHh
Confidence 367777 889999999987664
No 226
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.49 E-value=0.078 Score=55.04 Aligned_cols=39 Identities=28% Similarity=0.522 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~ 213 (516)
.++.++ +..|+||||++.++|..++. .|.+|+++++...
T Consensus 204 ~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 455555 99999999999999999986 6899999998753
No 227
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.47 E-value=0.037 Score=49.12 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=25.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++|.+. |-.|+||||++..||..| | ...+|.|.
T Consensus 3 ~m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 3 LAKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp --CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 45567776 889999999999999876 3 34677764
No 228
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.42 E-value=0.48 Score=40.57 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+..............+|.+++|...+. .++..+...++.+.+ .+.+ +-+|.|+++..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 35678999998743222222222345788888876544 455555555444433 2555 45888997753
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.39 E-value=0.073 Score=46.20 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.+.++ |..|+||||++..++..+...|+++..++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3467776 8899999999999999998889888888764
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.35 E-value=0.075 Score=47.91 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+++.++ |--|+||||++..++..+..+|++|+++-.
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 345554 888999999999999999999999999753
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.27 E-value=0.049 Score=48.61 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++.|.++ |-.|+||||++..||..| |.. .+|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~~--~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KRI--LYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 35567776 779999999999999877 443 556664
No 232
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.20 E-value=0.2 Score=57.34 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+..............+|.+++|+..+..........+..+...+++.+-+++|+++..
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999987322222222234468999999887664444455556666667888666888997643
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.19 E-value=0.12 Score=62.44 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
..++.++ +..|+||||++.++|..+++.|.+|+.||+....
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 3466665 9999999999999999999999999999998643
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.16 E-value=0.11 Score=47.35 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+++|++. |-.|+||||++..||..|...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 3567776 77999999999999999998899985543
No 235
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.15 E-value=0.49 Score=42.56 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (516)
++++.++|||+.-............+|.+++|...+. .++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 4678899998642211121122346788988887654 456666666555533 3455 4578899764
No 236
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=1.3 Score=39.04 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+||++.-. .. . ...+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.......
T Consensus 66 ~~~l~i~Dt~G~~~-~~--~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 137 (184)
T 3ihw_A 66 SYLLLIRDEGGPPE-LQ--F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-- 137 (184)
T ss_dssp EEEEEEEECSSSCC-HH--H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC--
T ss_pred EEEEEEEECCCChh-hh--e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--
Confidence 35678899976432 22 1 234688888876544 4566666667666653 345 4588899765311110
Q ss_pred ccCCchHHHHHHHhC
Q 010156 355 PFGRGSGSQVVQQFG 369 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g 369 (516)
....+...++.+.++
T Consensus 138 ~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 138 VIDDSRARKLSTDLK 152 (184)
T ss_dssp CSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcC
Confidence 122234566666665
No 237
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.09 E-value=0.7 Score=49.50 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|||+...........+..+|.+++|+..+.--.......++.+...++++ -+++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEecccccc
Confidence 346899999875332222222234589999998877633334455666777778885 5788998753
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.05 E-value=0.13 Score=47.03 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+.+|+|. |..|+||||++..|+..+...|.++..|..|..
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3578887 899999999999999999876777888887753
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.98 E-value=0.12 Score=61.53 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|.++ +..|+||||++.++|..+++.|.+|+.+++....
T Consensus 732 G~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 3466665 9999999999999999999999999999997643
No 240
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.90 E-value=0.04 Score=49.25 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|+++ |-.|+||||++..||..| |.. ++|.|.
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 2 APKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 3467776 889999999999998877 443 678874
No 241
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.81 E-value=0.82 Score=42.08 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=51.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
..+.+-|.||++.-....+...-...++.+++|... +..++..+...++.+... +++ +-+|.|+++.....
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r---- 134 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKR---- 134 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGC----
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcC----
Confidence 345678999976432222222223457778777654 445677777766666542 333 56888997654321
Q ss_pred ccCCchHHHHHHHhCCCe
Q 010156 355 PFGRGSGSQVVQQFGIPH 372 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~ 372 (516)
....+..+++++.+|.++
T Consensus 135 ~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVMF 152 (216)
T ss_dssp CSCHHHHHHHHHHHTCEE
T ss_pred cccHHHHhhHHHHhCCee
Confidence 123345677888888643
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.74 E-value=0.072 Score=52.62 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~~ 213 (516)
+.++.|+ |..|+||||++.++|...+.. |.+|+.||++..
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3466666 889999999999999987665 789999999853
No 243
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.65 E-value=0.13 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllID~D~~~ 214 (516)
+.+|+++ |-.|+||||++..|+..+.. .+.+|.++..|...
T Consensus 92 p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4578877 88999999999999988874 35689999999743
No 244
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.62 E-value=0.14 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+++|++. |-.|+||||++..||..|...+.+|.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4577776 77899999999999999998888885544
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.62 E-value=0.1 Score=46.10 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|.+. |-.|+||||++..|+.. ......||.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3455555 99999999999888872 23456777764
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.56 E-value=0.14 Score=50.20 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D 211 (516)
.+-+.++ |..|+|||+++..+|..+. +.|++|+.+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3456666 8899999999999999999 999999998874
No 247
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.56 E-value=0.075 Score=48.62 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHH-----HCC-CcEEEEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 211 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G-~rVllID~D 211 (516)
||.++.|+ |..|+|||+.|..++..++ +.| ++|.+...|
T Consensus 4 ~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 45555555 9999999999999877765 567 665555444
No 248
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.53 E-value=0.28 Score=54.98 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+...........+..+|.+++|+.............+..+...+++++ +|+|+++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCcc
Confidence 46789999998854332233333557899999988766533344555555556677764 788997643
No 249
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.48 E-value=0.3 Score=42.84 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+. ..+..+.+. +.+ +-+|.|+++..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 4567899998642211111222345788888887655 4455554 345555543 555 45888997643
No 250
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.47 E-value=0.73 Score=47.62 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=41.3
Q ss_pred CCCEEEEcCCCC---------CChhhh--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPG---------TGDIQL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~---------~~~~~~--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
+..+.|+|||+- ...... .......+|.+++|+...........+.++.+.+.+.++ -+|+|+++..
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~ 319 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV-VIVVNKWDAV 319 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGGS
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCE-EEEEEChhcC
Confidence 346788999762 111111 111234578888888776644455566777777777664 4788998754
No 251
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=92.44 E-value=0.37 Score=51.65 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=49.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (516)
..|.+.|+|||+...........+..+|.+++|+....-........+..+...++++ -+|+|+++..... ..
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipi-IvViNKiDl~~a~------~~ 141 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV-VPVLNKIDLPAAD------PE 141 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEE-EEEEECTTSTTCC------HH
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEeeeccCccccc------HH
Confidence 3577899999875432222223345689999998875532223334444445567774 5778997653211 01
Q ss_pred chHHHHHHHhCC
Q 010156 359 GSGSQVVQQFGI 370 (516)
Q Consensus 359 ~~~~~~~~~~g~ 370 (516)
...+++.+.++.
T Consensus 142 ~v~~ei~~~lg~ 153 (599)
T 3cb4_D 142 RVAEEIEDIVGI 153 (599)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 345667777765
No 252
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.41 E-value=0.12 Score=50.50 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=33.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH--HCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllID~D~~~ 214 (516)
+.+|+++ |..|+||||++..|+..+. -.+.+|.+|++|-..
T Consensus 80 g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 80 PYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4588888 8899999999999998886 345579999998643
No 253
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.39 E-value=0.26 Score=51.65 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=42.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
++.+.|+|||+.-............+|.+++|+..+..........+..+...+++ +-+++|+++..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 45678999987533222222234457889999876554333445556666677888 55788997653
No 254
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.37 E-value=0.56 Score=41.58 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=24.7
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
|.+++|+..+...-..-...++.+...+.++ -+|.|+++..
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~ 147 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV-IVIATKADKI 147 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccC
Confidence 6777777655432222234556666667774 5788997653
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.36 E-value=0.12 Score=51.61 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~~ 213 (516)
+.++.|+ |..|+||||++.++|...+. .|.+|+.||++..
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3455555 99999999999999998654 5789999999863
No 256
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.33 E-value=0.12 Score=55.70 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=35.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+++|.|+ |-.|+||||++..||..|..+|.++..+|.|.-.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 34566666 8999999999999999999999999999877543
No 257
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.31 E-value=0.14 Score=54.16 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+|. ..|-.|+||||++..||..|...|.++.+++.|-
T Consensus 35 ~~lIv-lvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIV-MVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEE-EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEE-EECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 34454 4599999999999999999998899999999885
No 258
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.26 E-value=0.12 Score=55.21 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllID~D~ 212 (516)
.+.+|.|+ |-.|+||||++..|+..|..+| .++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 34566666 8899999999999999999888 8999999875
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.22 E-value=0.11 Score=49.42 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|+|+ |-.|+||||+|..||..+ |. .+|+.|.
T Consensus 1 M~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 3566665 889999999999998876 33 4677775
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.21 E-value=0.069 Score=48.50 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|+++ |..|+||||++-.||. + | +-++|+|.
T Consensus 1 m~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 1 MKRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 3578887 8899999999988887 4 5 45667764
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.21 E-value=0.14 Score=49.08 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC----------CCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~----------G~rVllID~D~ 212 (516)
.+++++ |..|+||||++.++|..++.. +.+|++++...
T Consensus 31 ~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 31 TVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 467776 999999999999999977652 35677777653
No 262
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=92.19 E-value=0.17 Score=53.46 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=41.0
Q ss_pred cceEEEEE-eCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 172 ISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 172 ~~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
|+|-|.|+ +.-.|+||+++++.|+..|.++|+||..+-.||+-+-
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~ 56 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV 56 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCS
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccccccc
Confidence 67889999 8899999999999999999999999999999987643
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.17 E-value=0.12 Score=51.35 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
++|+|+ |-.|+||||+|..||..|. +.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 466665 8899999999999988763 789999965
No 264
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.15 E-value=0.1 Score=47.55 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=26.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++|+++ |-.|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 35678887 8899999999988875 4654 568875
No 265
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.07 E-value=0.18 Score=44.42 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-------CCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~-------~G~rVllID~ 210 (516)
+.+.++ |..|+||||++..+|..+.. .|.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345555 99999999999999999977 3555555554
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.05 E-value=0.1 Score=50.66 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCC--CcEEEE-EcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G--~rVllI-D~D~~ 213 (516)
+.+|+|+ |..|+||||++..|+..|...| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3578887 8899999999999999998654 444444 88864
No 267
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.00 E-value=1.2 Score=44.39 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCCCh-------------hhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecc
Q 010156 280 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (516)
Q Consensus 280 ~yD~VIID~pp~~~~-------------~~~~~~~~~~~d~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 344 (516)
..++.|+|||+-... ..+....+..++.+++++.+.. ........+++.+...+.+++ +|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999873221 1222222445787887776532 223344556666666666755 566997
Q ss_pred ccc
Q 010156 345 HFD 347 (516)
Q Consensus 345 ~~~ 347 (516)
+..
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 754
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.91 E-value=0.072 Score=46.88 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=26.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|+++|+++ |-.|+||||++..||..+ |. ..+|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEeccH
Confidence 34578877 889999999998888765 33 5677763
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.89 E-value=0.12 Score=50.98 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
|.++|.++ |-.|+||||++..||..+ ...+||+|-.
T Consensus 4 m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 44566665 889999999999998765 3678899853
No 270
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.88 E-value=0.12 Score=46.90 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.6
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+..+++|+|. |-.|+||||++..||..+ |. ..+|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 4456778777 889999999999988764 54 567776
No 271
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.88 E-value=0.12 Score=48.07 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~ 212 (516)
.+++++ |..|+||||++..+|...+. .+.+|+.+|...
T Consensus 25 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 467776 89999999999999986443 367899999875
No 272
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.83 E-value=0.12 Score=46.84 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
++.|++. |-.|+||||++..||..| .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 3577777 889999999999998877 4677776653
No 273
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.78 E-value=0.32 Score=43.70 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCc
Confidence 34678999998742211111122345788888887654 344455444444332 2445 45788997754
No 274
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.75 E-value=0.12 Score=45.98 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=26.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
|+++|++. |-.|+||||++..||..| | ...+|.|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 45677776 889999999999998876 4 3566775
No 275
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.75 E-value=1.9 Score=38.84 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+ ...++.+.+. +.+ +-+|.|+++..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 4678999998742211111222345788888877654 345555 3444555442 344 56888997754
No 276
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.73 E-value=0.39 Score=50.79 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=39.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-.........+..+|.+++|+.... .......++.+...+ .+++ +|.|+++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~--~~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT--DSNKHYWLRHIEKYGGKSPVI-VVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--GGGHHHHHHHHHHHSSSCCEE-EEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--chhHHHHHHHHHHhCCCCCEE-EEEECCCcc
Confidence 46789999998742211111111335788888886543 345555666665543 6654 888997753
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.73 E-value=0.18 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
++|+|. |-.|+||||++..||..|...| +|...+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 456665 8899999999999999998777 675443
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.73 E-value=0.057 Score=49.33 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+|+|. |-.|+||||++..|+..|...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 788999999999999999888888887753
No 279
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.70 E-value=0.35 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-............+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 34567799998742211222222446788888887654 4555554 455555543 555 45788997653
No 280
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=91.66 E-value=0.38 Score=50.25 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||+.-.........+..+|.+++|+..+.-........+..++..+++. -+++|+++.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 3467999999874221122223345689999999876643444556666777788887 688899764
No 281
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=91.59 E-value=0.081 Score=44.90 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=23.7
Q ss_pred EEEecCeeEEEEcCCCCccccchhhhhcCC
Q 010156 487 IRPMGNYAVSITWPDGFSQVVCLILFHSKS 516 (516)
Q Consensus 487 ~~~~~~~~l~i~w~Dgh~s~y~~~~L~~~~ 516 (516)
+...++ .|.|.|+||+.+.|++.|||.++
T Consensus 16 l~~~~~-~L~v~w~DG~~~~~~~~wLRd~C 44 (132)
T 2l6n_A 16 LKRKSR-QLEISFDNGQQFTLSCELLRVYS 44 (132)
T ss_dssp EEGGGT-EEEEEETTSCEEEEEHHHHHHSC
T ss_pred EecCCC-EEEEEECCCCEEEeCHHHHHhcC
Confidence 333444 79999999999999999999864
No 282
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.59 E-value=0.82 Score=39.82 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+. ..++.+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR 125 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence 4567799998743222222222445788998888654 4555554 455555542 455 45888997753
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.49 E-value=0.18 Score=45.97 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=31.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
+.+|+++ |..|+||||++-.|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4588888 77899999999999887743 68999998754
No 284
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.48 E-value=0.059 Score=57.95 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+-..........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999874321111222234568888887665321 23345556667777887566888997753
No 285
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=91.46 E-value=0.47 Score=48.28 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 281 yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.|+|||+...........+..+|.+++|+..+... .......+..+...+.+.+-+++|+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 56899999874221122222344579999998877532 3444455555665666556688899764
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.44 E-value=0.12 Score=46.98 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|++. |-.|+||||++..||..| |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 4577776 899999999999999887 443 456663
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.39 E-value=0.13 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|.+. |-.|+||||++..||..+ |+. .+|.|.
T Consensus 1 M~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 1 MTLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp -CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 3466665 889999999999988776 443 467764
No 288
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=91.38 E-value=0.24 Score=52.25 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=39.9
Q ss_pred ceEEEEE-eCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 173 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 173 ~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
+|-|.|+ +.-.|+||+++++.|+..|+++|+||..+-.||+-+-
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~ 47 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINV 47 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccC
Confidence 4778888 8899999999999999999999999999999987653
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.30 E-value=0.13 Score=45.90 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+++|.+. |-.|+||||++..||..| |.. ++|.|
T Consensus 5 ~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 3456655 889999999999999877 544 45654
No 290
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.25 E-value=0.22 Score=43.82 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+++|+++ |-.|+||||++..|+..+ | ...+|.|.-
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 4577776 889999999999998876 5 356787753
No 291
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.22 E-value=0.26 Score=45.51 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+.|+|. |-.|+||||.+..|+..|...|++|....
T Consensus 7 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 466665 88999999999999999999999997654
No 292
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.07 E-value=0.33 Score=44.71 Aligned_cols=36 Identities=17% Similarity=-0.042 Sum_probs=31.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+++. |..|--|.||||.+..+|..+..+|+||+++-
T Consensus 28 G~l~-vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIE-VICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEE-EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEE-EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4444 45588899999999999999999999999985
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.06 E-value=0.12 Score=47.14 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+++|+++ |..|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34678887 7789999999887765431 5889999864
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.94 E-value=0.12 Score=46.58 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|++. |-.|+||||++..||..| | ...+|.|-
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4577776 889999999999998877 3 34677753
No 295
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.89 E-value=0.22 Score=52.64 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=46.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.+.+.|+|||+.-.........+..+|.+++|+..+..........+..+...++++ -+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi-IVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI-VLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE-EECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEeccccc
Confidence 345788999874332222222344578999999887766667777888888888884 5788997753
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.80 E-value=0.12 Score=46.73 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++|+++ |-.|+||||++..||..| | +-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 477777 889999999999998877 3 45678774
No 297
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.79 E-value=0.2 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAG 200 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~ 200 (516)
-+.+ .|..|+||||++..+|..+..
T Consensus 45 ~vll-~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPIL-LGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEE-ESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 4544 489999999999999999876
No 298
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.78 E-value=0.24 Score=46.10 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=33.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID~D~~~ 214 (516)
++.|+|. |--|+||||++..|+..|.. .|++|.++--.|.+
T Consensus 21 ~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 21 SMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 4567766 88999999999999999998 99999885556643
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.72 E-value=2.2 Score=42.52 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID 209 (516)
.+|+|+ |..|+||||+...++..+... |.+++.++
T Consensus 124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 366766 899999999999999888764 66666554
No 300
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.65 E-value=0.18 Score=45.37 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=26.7
Q ss_pred cCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 170 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 3445678887 88999999999888764 64 4678874
No 301
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.64 E-value=0.34 Score=44.07 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAY 196 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~ 196 (516)
..|+|+ |..|+||||+...|..
T Consensus 13 ~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHhc
Confidence 467777 8999999999877653
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.55 E-value=0.19 Score=45.44 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=25.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+++|.+. |-.|+||||++..||..+ |.. ++|+|
T Consensus 19 ~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp SCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 34567666 889999999999999877 554 46664
No 303
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.52 E-value=0.39 Score=51.00 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCCh-----------hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 282 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 282 D~VIID~pp~~~~-----------~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
.++|||||+-... .......+..+|.+++|+.+... ........++.+.+.+.+ +-+|+|+++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCcc
Confidence 5799999874321 11111223457999999988763 344556667777766666 55888997643
No 304
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.49 E-value=1.8 Score=37.96 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-............+|.+++|...+. .++..+ ...++.+.+. +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34568899998642211111122345788888877654 445555 3444545432 444 55888997754
No 305
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.48 E-value=0.25 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
|++-|+|= |--|+||||.+..|+..|. +|++|++.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 45678877 7788999999999999996 588887653
No 306
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.37 E-value=0.16 Score=48.10 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
++|.++ |-.|+||||++..|+..+ |..+.++|.|...
T Consensus 33 ~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 455554 899999999999998766 3456788988643
No 307
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.34 E-value=0.43 Score=43.62 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=39.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+.-............+|.+++|...+.. ++..+...+..+.+. +.++ -+|.|+++..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCccc
Confidence 356789999987321111111123457888888776553 455555555555442 4554 5888998754
No 308
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.33 E-value=0.18 Score=52.87 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH-C-CCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~-G~rVllID~D~ 212 (516)
+.+|.++ |-.|+||||++..||..|.. . |+.+-++|.|.
T Consensus 395 ~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3566665 88999999999999999987 5 47788999987
No 309
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.24 E-value=0.21 Score=48.14 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=26.8
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+++|+|+ |-.|+||||++..|+ .+ |.. +||+|.
T Consensus 73 ~~~~iI~I~-G~~GSGKSTva~~La-~l---g~~--~id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGLT-GISGSGKSSVAQRLK-NL---GAY--IIDSDH 107 (281)
T ss_dssp TTCEEEEEE-ECTTSCHHHHHHHHH-HH---TCE--EEEHHH
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHH-HC---CCc--EEehhH
Confidence 345678887 889999999999998 33 654 578875
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.13 E-value=0.31 Score=45.35 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~ 212 (516)
+.++++. |..|+||||+...++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4578887 8999999999999997655 6677888888764
No 311
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.06 E-value=0.23 Score=45.03 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+|+++ |--|+||||++..||..+ |. -+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g~--~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---GA--HVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CC--EEEECcHH
Confidence 477777 789999999999888765 54 56888864
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.02 E-value=0.23 Score=44.29 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++|++. |-.|+||||++..||..+ |. ..||.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 456665 889999999999998776 44 356766
No 313
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.00 E-value=0.18 Score=43.97 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 206 (516)
+|++. |-.|+||||++..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 56665 99999999999888 55677654
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.97 E-value=0.26 Score=44.03 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|.++ |-.|+||||++..||..+ .| .-.+|+|-
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 3466666 889999999999888762 24 45678873
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.82 E-value=2.7 Score=42.09 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~ 210 (516)
..+|+|+ |..|+||||+...|+..+... ..+|+.++-
T Consensus 136 g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4577777 889999999999999988764 457777763
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.81 E-value=0.23 Score=43.42 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|++|.++ |-.|+||||++..||..| |.+ ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 5678887 889999999999988877 554 467765
No 317
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.67 E-value=0.2 Score=49.14 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH------------HCC----CcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La------------~~G----~rVllID~D~~ 213 (516)
.++.|+ +..|+||||++.++|...+ ..| .+|+.||++..
T Consensus 99 ~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 99 SVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 455555 8899999999999998743 235 79999999864
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.67 E-value=0.31 Score=44.10 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|+++ |-.|+||||++-.|+..+ |. ..+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g~--~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---GL--EFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---CC--EEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---CC--eEEcccc
Confidence 3577776 889999999999999887 53 5677765
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.47 E-value=0.22 Score=48.24 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=26.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.+.+|-.|+||||++..|+..+ +.....||+|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 455667999999999999988755 224577888654
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.39 E-value=0.36 Score=45.30 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-----CCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-----G~rVllID~D~ 212 (516)
+.+|+++ |..|+||||++-.|+..+... +.++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 3588888 889999999999998877321 34678888884
No 321
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.38 E-value=0.14 Score=50.37 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+++. ..|..|+||||++.++|.. .|.+|+.++++
T Consensus 124 sviL-I~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMVI-VTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEE-EECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEEE-EEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 4554 4599999999999999987 57899999983
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.26 E-value=0.28 Score=45.67 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=26.8
Q ss_pred cccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 168 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.....++.|.|. |..|+||||++..||..| |. ..+|+|
T Consensus 11 ~~~~~~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 48 (233)
T 1ak2_A 11 PESPKGVRAVLL-GPPGAGKGTQAPKLAKNF---CV--CHLATG 48 (233)
T ss_dssp ---CCCCEEEEE-CCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---CC--ceecHH
Confidence 344445677776 889999999999999887 33 456664
No 323
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.21 E-value=0.43 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCc-EEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 208 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r-VllI 208 (516)
++.|+|. |-.|+||||++..|+..|...|.+ |.+.
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3567766 778999999999999999999999 5554
No 324
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.13 E-value=0.2 Score=43.64 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+|.+. |-.|+||||++..||..| |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 46666 889999999999998877 444 567764
No 325
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.08 E-value=0.22 Score=45.76 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=25.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
|+.|.|. |-.|+||||++..||..| |.. .+|+|
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 3467666 888999999999999887 544 45654
No 326
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.82 E-value=0.49 Score=42.95 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
|+|= |--|+||||.+..|+..|...|++|.+..
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5554 77899999999999999999999998764
No 327
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.76 E-value=0.49 Score=43.59 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCC-cEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllI 208 (516)
+.|+|- |-.|+||||.+..|+..|...|+ .|.+.
T Consensus 4 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 567776 78899999999999999999998 66444
No 328
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.71 E-value=0.43 Score=46.52 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=38.8
Q ss_pred CCCCEEEEcCCCCCCh-----hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~-----~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (516)
+.+.+.|+|||+.-.. ..........+|.+++|...+. .+...+....+.+... +.+ +-+|.|+++..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 3567899999764211 0111111245788999887765 4556554443333322 444 55888997653
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.64 E-value=0.41 Score=44.57 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.9
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
+++.|+|. |-.|+||||++..|+..|.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34577776 88999999999999999988 8888654
No 330
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=88.58 E-value=0.83 Score=46.87 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+...........+..+|.+++|+...........+.+..+...+.+.+-+|+|+++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999987432222222334578999999988765555566666677777877677889997643
No 331
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.57 E-value=0.45 Score=46.53 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.++ |..|+||||++..+|..+...|.+++.+++.
T Consensus 39 ~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 46666 8899999999999999999889999999864
No 332
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.54 E-value=0.43 Score=50.98 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=29.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
+.+..|-.|+||||+...++..+...|++|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 444459999999999999999999999999986
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.53 E-value=0.29 Score=43.31 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=24.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.|.++ |-.|+||||++..||..+ |. ..+|.|
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 456665 899999999999998877 43 345665
No 334
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.50 E-value=1.9 Score=38.71 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|+|+.-....+.......+|.+++|...+. .++..+. ..+..+... +.++ -+|.|+++..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeCHHhh
Confidence 34678899998743221122222446788988887654 4555554 455555543 5554 5888997653
No 335
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.46 E-value=0.39 Score=47.89 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC--------CCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~--------G~rVllID~D 211 (516)
+.+.++ |.+|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 456655 999999999999999998765 7888888864
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.41 E-value=0.33 Score=44.54 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++.|.|. |-.|+||||++..||..| |. ..+|+|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 4567776 889999999999999877 44 456664
No 337
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.34 E-value=0.31 Score=43.39 Aligned_cols=34 Identities=41% Similarity=0.451 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++|++. |..|+||||++-.||.. .+...+.+|.|
T Consensus 10 ~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 467766 88999999998888764 34445566655
No 338
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.21 E-value=0.23 Score=42.56 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=27.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.++ |..|+|||++|..++....+.+..++ +++..
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 5555 89999999999999887777677777 77753
No 339
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.16 E-value=0.54 Score=45.42 Aligned_cols=38 Identities=29% Similarity=0.245 Sum_probs=32.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.+.++ |..|+||||+|..+|..+...+..+..+|+...
T Consensus 49 ~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 49 SFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 56666 889999999999999999888888999998653
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.07 E-value=0.34 Score=43.29 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+++|++. |-.|+||||++..||..| |. ..+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 4577776 889999999999999877 44 366765
No 341
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.89 E-value=0.41 Score=46.31 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.+.++ |..|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 356666 889999999999999988 778888875
No 342
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.83 E-value=0.44 Score=44.38 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC----CCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~----G~rVllID 209 (516)
+.|+|. |-.|+||||++..|+..|... |++|.+.-
T Consensus 26 ~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 466665 889999999999999999988 99997543
No 343
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.80 E-value=0.65 Score=43.30 Aligned_cols=39 Identities=13% Similarity=-0.095 Sum_probs=32.3
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.++++.. ..|.-|.||||-+..++..+..+|+||+++-.
T Consensus 17 ~~g~l~v-~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQV-ILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp -CCEEEE-EECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEE-EECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3455554 45888999999999999999999999999984
No 344
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.57 E-value=0.65 Score=44.00 Aligned_cols=20 Identities=50% Similarity=0.604 Sum_probs=16.8
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLA 195 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA 195 (516)
.|+++ |..|+||||+.-.|.
T Consensus 38 ~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEE-ECTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 56776 999999999987775
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.48 E-value=0.42 Score=42.30 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=24.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++|++. |-.|+||||++..||..+ |. ..+|+|
T Consensus 5 ~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 5 QAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 466666 889999999999998876 44 456665
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.31 E-value=0.23 Score=43.93 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 206 (516)
+++|.+. |-.|+||||++..||..| |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 4566666 889999999999887655 55554
No 347
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.18 E-value=0.47 Score=43.46 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~ 212 (516)
..++++. |..|+||||++..|+..+.. .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3577777 88999999999999987654 356788888764
No 348
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.14 E-value=0.44 Score=47.31 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC---CCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~---G~rVllID~D~ 212 (516)
+.+.++ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 46 NNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 456665 899999999999999998765 78888888753
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.12 E-value=0.78 Score=44.90 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-C-CcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~rVllID~D~~ 213 (516)
+.+|++. |..|+||||++-.|+..+... | .+|.+|-.|..
T Consensus 90 g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4588887 889999999999999988753 5 57888888754
No 350
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=86.98 E-value=0.38 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAY 196 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~ 196 (516)
.++|+|+ |-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 4688887 8899999999998885
No 351
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=86.89 E-value=1.6 Score=45.16 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.+.|+|||+.-.........+..+|.+++|+........ ...+.+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999987543333333345568999999988764332 445555666677887667889998754
No 352
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=86.87 E-value=0.71 Score=43.27 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=40.0
Q ss_pred cceEEEEEeCC-CCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 172 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 172 ~~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
.||-|.|+++- .|.||-.+|+.|+..|..+|+||..+-.||+-+-
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNv 67 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 67 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceee
Confidence 46888888775 8899999999999999999999999999998654
No 353
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.80 E-value=0.42 Score=46.10 Aligned_cols=34 Identities=26% Similarity=0.152 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++|.+. |-.|+||||++..|+..+ .| ...||.|.
T Consensus 3 ~~I~l~-G~~GsGKST~a~~L~~~~--~~--~~~i~~D~ 36 (301)
T 1ltq_A 3 KIILTI-GCPGSGKSTWAREFIAKN--PG--FYNINRDD 36 (301)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHS--TT--EEEECHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhC--CC--cEEecccH
Confidence 455555 999999999998888732 23 56677763
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.77 E-value=0.49 Score=43.39 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+|+++ |..|+||||++..||..+ | +-.+|.|
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 478888 889999999999888766 3 3456665
No 355
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.75 E-value=0.43 Score=48.49 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllID~D~ 212 (516)
..++.|+ |..|+||||++.+|+..... .+.+|+.||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4567776 89999999999999877654 467899999875
No 356
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.61 E-value=0.47 Score=46.94 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
++|.|+ |-.|+||||++..||..| ..-+||+|-.
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 456655 889999999999988755 3568999964
No 357
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.51 E-value=0.69 Score=47.84 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCC-cEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllI 208 (516)
..+..|-.|+||||++..++..|...|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4455588999999999999999999887 67776
No 358
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.37 E-value=0.52 Score=46.92 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~ 212 (516)
+.++.++ |..|+||||++..++..++.. |.+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4577777 889999999999999987532 35889999864
No 359
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.35 E-value=0.75 Score=44.36 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCC----cEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~----rVllID~ 210 (516)
.-+.++ |..|+|||++|..+|..+...+. .++.+++
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 346666 88999999999999999988654 5555553
No 360
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.34 E-value=0.67 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+++.-|-+|+|||++.+++...|.+.|.+||++-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 66777999999999999999999999999998753
No 361
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.23 E-value=0.58 Score=45.77 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=24.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+.+|-.|+||||++..||..+ ..-+|.+|-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 44455889999999999998765 356888885
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.08 E-value=0.41 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
|+.|.|. |-.|+||||++..||..|
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4567666 789999999999999877
No 363
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.06 E-value=0.52 Score=42.25 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.|++. |-.|+||||++..||..|
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCccCHHHHHHHHHHhc
Confidence 46666 889999999999999887
No 364
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.90 E-value=0.63 Score=56.38 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
+++|.++ |-.|+|||++|.++|....++|.+|+.||++-.
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4566666 899999999999999999999999999998853
No 365
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=85.76 E-value=0.55 Score=48.00 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=34.2
Q ss_pred CcceEEEEEe---CCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 171 KISNIVAVSS---CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 171 ~~~kvI~v~s---~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
...|.|.|++ ..-|.||||+++.|+.+|.+.|+++.+. .+.||+
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSl 87 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSL 87 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCH
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCC
Confidence 3467776665 4779999999999999999999999764 344453
No 366
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.71 E-value=0.39 Score=44.33 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
++.|+|. |-.|+||||++..||..| |. ..+|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3567776 889999999999888765 54 356664
No 367
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.54 E-value=0.59 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.+.+|++. |..|+||||++-.||..+
T Consensus 26 ~~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35678887 999999999999999777
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.52 E-value=0.7 Score=43.31 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=24.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+++|.++ |-.|+||||++..|+..+ |. ..+++|
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~---g~--~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH---CY--CHLSTG 61 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEecH
Confidence 3456665 889999999999998776 43 455664
No 369
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.46 E-value=0.4 Score=43.25 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.++ |..|+|||+++..++..+...+.++..+..
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 5555 899999999999999998766544333333
No 370
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.30 E-value=0.93 Score=45.07 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~ 212 (516)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 56665 999999999999999988776 68888888754
No 371
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.18 E-value=0.57 Score=46.53 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~ 212 (516)
+.+.++ |..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 345555 999999999999999998764 66777777644
No 372
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.15 E-value=1.2 Score=40.41 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=32.5
Q ss_pred cccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 168 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
....|+++..++ |.-|+||||-....+..+..+|++|+++-..
T Consensus 15 ~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 344566655555 8888999999999999998999999999743
No 373
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.11 E-value=0.56 Score=41.73 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+|++. |..|+||||++..|+. ..+. ...+|.|.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~---~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA---QLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH---HSSS-EEEEEHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc---ccCC-eEEEcccc
Confidence 3466666 8899999999999975 2222 24566553
No 374
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.04 E-value=0.51 Score=43.08 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=23.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|+|. |..|+||||++..||..+ |..+ +|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 35555 888999999999999877 5544 5553
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.01 E-value=0.58 Score=42.60 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=23.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|.++ |-.|+||||++..||..+ |.. .+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~~--~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EIP--HISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCc--EeeHH
Confidence 35555 889999999999998776 543 45664
No 376
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.77 E-value=4.1 Score=35.26 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (516)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 130 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQ---- 130 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCC----
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCc----
Confidence 3678899998743221222222346788888887755 3556666666655542 344 558889977543211
Q ss_pred cCCchHHHHHHHhCC
Q 010156 356 FGRGSGSQVVQQFGI 370 (516)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (516)
...+..+++.+.++.
T Consensus 131 v~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 131 VSKERGEKLALDYGI 145 (183)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345566666664
No 377
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=84.40 E-value=1.2 Score=45.38 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 48 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 48 APFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 66789999999999999999999876
No 378
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=84.32 E-value=1.9 Score=40.73 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=39.0
Q ss_pred cceEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 010156 172 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (516)
Q Consensus 172 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~~ 217 (516)
.||-|.|+++ -.|.||=.+|+.|+..|..+|+||.++-.||+-+--
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD 68 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINID 68 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecC
Confidence 4566766654 678899999999999999999999999999987543
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.31 E-value=0.96 Score=41.25 Aligned_cols=32 Identities=47% Similarity=0.595 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++|+++ |-.|+||||++..||. .|. -++|+|.
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 467776 8899999999888875 465 5678873
No 380
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=84.29 E-value=0.7 Score=42.13 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=21.3
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.++++|+|+ ||.|+||+|+|--+...+
T Consensus 9 ~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 345677777 999999999998776555
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.09 E-value=0.84 Score=42.13 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.+|+|.+. |-.|+||+|.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45777777 889999999999999876
No 382
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.98 E-value=0.64 Score=43.89 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=30.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.++ |..|+|||++|..++..+.+.+.+++.+++..
T Consensus 32 vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 32 VLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp EEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred EEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 5555 89999999999999988877778888888764
No 383
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.77 E-value=0.71 Score=48.97 Aligned_cols=39 Identities=38% Similarity=0.458 Sum_probs=31.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D~ 212 (516)
+.+|+++ |..|+||||++..||..|... |.++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4577777 889999999999999999765 45787888774
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.58 E-value=0.69 Score=42.62 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|.|. |-.|+||||++..||..| |. ..+++|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 35555 889999999999999877 54 345663
No 385
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.56 E-value=1.3 Score=43.10 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|.| +|-.|+||||++..||..+ ..-+|.+|-
T Consensus 10 ~~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFL-MGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CEEEEE-ECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CcEEEE-ECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 345554 5899999999999998765 356788885
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.56 E-value=1.1 Score=47.25 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
..++++. |..|+||||++..++..+...|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3467776 8999999999999999998889999888764
No 387
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.39 E-value=1.1 Score=44.98 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=30.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.|+ |..|+||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455 8899999999999999998889999999765
No 388
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.31 E-value=0.9 Score=46.72 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC--CCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllID~D 211 (516)
+-+.++ |..|+||||++..+|..+... |.+++.+++.
T Consensus 131 ~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 456666 889999999999999999775 7888888764
No 389
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.14 E-value=0.94 Score=45.48 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.7
Q ss_pred eCCCCChHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 010156 180 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (516)
Q Consensus 180 s~KGGvGKTT~a~nLA~~La~~------G~rVllID~D~ 212 (516)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 5999999999999999988763 67788888753
No 390
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=83.09 E-value=0.93 Score=42.47 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.4
Q ss_pred ccccCcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 167 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.....|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 16 ~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred ccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 345567889999988888886 688899999999999997764
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.93 E-value=0.63 Score=42.42 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.|.++ |-.|+||||++..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 35555 889999999999887654 54 355664
No 392
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.88 E-value=0.73 Score=40.82 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
+++|+++ |..|+||||++-.|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3567766 899999999999888765
No 393
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=82.86 E-value=1.7 Score=44.64 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
..+.+.|+|||+.-.........+..+|.+++|+..+..-. ......+..+...+++.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999998743322222333446899999988876432 245566667777788856688899764
No 394
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.82 E-value=1.6 Score=40.71 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+-|.++ |..|+|||+++..+|..+ |.++..+++.
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 346666 889999999999998876 5677777664
No 395
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.57 E-value=1.3 Score=45.89 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=30.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+|.+ .|-.|+||||++..||..|...+.++..++.|.
T Consensus 40 ~~Ivl-vGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 40 TLIVM-VGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp EEEEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 34544 489999999999999999988888888777553
No 396
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.56 E-value=1.7 Score=41.23 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHC-CCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID~D 211 (516)
..+++|+ |..|+||||+...|+..+... ..+|.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 4577777 889999999999999888654 4567665544
No 397
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=82.54 E-value=1.4 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
.++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 39 ~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 4699999 66789999999999999999999887
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.52 E-value=0.86 Score=42.91 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.1
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
..+.+|++. |-.|+||||++-.||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345688888 889999999999888655
No 399
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=82.48 E-value=11 Score=37.29 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHc-C-CCCEEEEEEeccc
Q 010156 280 ELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 345 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~---------~~~~~~~~~~d~viiV~~p~~~---s~~~~~~~~~~l~~-~-~~~~~gvV~N~~~ 345 (516)
.+++.++|||+..... .........+|.+++|+..+.. +.......++.+.. . +.+ +-+|.|+++
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 4468889997643210 0001112246888888875543 45555556655543 2 555 457889966
Q ss_pred c
Q 010156 346 F 346 (516)
Q Consensus 346 ~ 346 (516)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
No 400
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=82.43 E-value=2.5 Score=43.90 Aligned_cols=65 Identities=5% Similarity=-0.094 Sum_probs=32.7
Q ss_pred CCCCEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcch-HH---HHHHHHHHHHcCCCCEEEEEEeccc
Q 010156 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLA-FI---DVAKGVRMFSKLKVPCIAVVENMCH 345 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~---------~~~~~~~~~d~viiV~~p~~~s-~~---~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (516)
+++.+.|+|||+- .... .+...+..+|.+++|+..+... .. .....++.+. +.+ +-+|+|+++
T Consensus 279 ~g~~l~liDT~G~-~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~D 354 (476)
T 3gee_A 279 DKTMFRLTDTAGL-REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLD 354 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTT
T ss_pred CCeEEEEEECCCC-CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcC
Confidence 4567899999763 2211 1111234678899988776542 22 3333344333 334 568889976
Q ss_pred cc
Q 010156 346 FD 347 (516)
Q Consensus 346 ~~ 347 (516)
..
T Consensus 355 l~ 356 (476)
T 3gee_A 355 RA 356 (476)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 401
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=82.31 E-value=1.2 Score=47.91 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH----CCCcEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 208 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllI 208 (516)
+.+..|..|+||||+...+...|.+ .|.+|+++
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 4555699999999999999988874 46677765
No 402
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=82.19 E-value=1.3 Score=43.43 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=28.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 207 (516)
.++|+|+ |--||||++.-++..|...|+++.+
T Consensus 108 ~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 108 HWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4799999 7789999999999999999988743
No 403
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.09 E-value=0.93 Score=41.22 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.+++|++. |-.|+||||++..|+..+
T Consensus 7 ~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 34577776 889999999998887654
No 404
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.79 E-value=1.4 Score=42.13 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=27.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
-+.++ |..|+|||+++..+|..+ +.++..+++..
T Consensus 52 ~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 52 NILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 45566 889999999999999887 66788888754
No 405
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=81.76 E-value=1.7 Score=43.12 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCC-------ChhhhhhhhhcCCCeEEEEeCCCc----chHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 010156 281 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (516)
Q Consensus 281 yD~VIID~pp~~-------~~~~~~~~~~~~~d~viiV~~p~~----~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 344 (516)
+.++|+|+|.-. +.....+..+..++.+++|+..+. .++..+....+.+... +.+ +-+|+|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 568999997611 011111112334788888887753 5666776666666653 344 45788997
Q ss_pred cc
Q 010156 345 HF 346 (516)
Q Consensus 345 ~~ 346 (516)
+.
T Consensus 285 Dl 286 (342)
T 1lnz_A 285 DM 286 (342)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 406
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=81.76 E-value=2.1 Score=44.67 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=39.4
Q ss_pred ceEEEEEeCC-CCChHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 010156 173 SNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (516)
Q Consensus 173 ~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~rVllID~D~~~~~ 216 (516)
+|-|.|++|- .|.||-.+|+.|+..|..+|+||.++-.||+-+-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnv 47 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINV 47 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceee
Confidence 6788888764 8889999999999999999999999999998754
No 407
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=81.74 E-value=1.8 Score=44.38 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=31.0
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
...++|.|+ |--||||++.-|+..|...|+||.++
T Consensus 50 ~~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 50 PAPKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999 66799999999999999999999885
No 408
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.35 E-value=0.72 Score=41.72 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
++|.|+ |-.|+||||++-.|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 456665 889999999999988776
No 409
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.28 E-value=2.5 Score=43.70 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=33.9
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
+++.+.|+|||+-.... .........+|.+++|+..+..........++.+.. .+ +-+|.|+++..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCC
Confidence 56678999997732110 001112345788898888765433333455555543 34 55788997643
No 410
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=81.22 E-value=1.1 Score=42.26 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=30.8
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.|++.|+++-+|.|+ .+|..|++.|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999887 56888999999999999774
No 411
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=80.92 E-value=2.9 Score=40.37 Aligned_cols=66 Identities=12% Similarity=0.002 Sum_probs=37.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEecccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 346 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 346 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..++.+... +.++ -+|.|+++.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 271 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDL 271 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE-EEEEECHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE-EEEEEchhc
Confidence 3456799998642211122222345788888887654 4455554 344444433 5554 578899765
No 412
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.71 E-value=1.2 Score=39.99 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G 202 (516)
+++++ |..|+||||+...||..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 57777 9999999999999999998667
No 413
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=80.55 E-value=1 Score=47.93 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=28.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHH---HH-CCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~L---a~-~G~rVllID~D~ 212 (516)
..++|+|+ |-||+||||+|..++... .. ....|.-++++.
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 35677776 999999999999987653 22 223577777764
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=80.35 E-value=1.2 Score=41.48 Aligned_cols=33 Identities=39% Similarity=0.530 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+|++. |-.|+||||++-.||..| | ...+|.|.
T Consensus 10 ~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 10 LVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 467776 889999999999998877 3 34567664
No 415
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=80.30 E-value=1.9 Score=44.96 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=31.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
..++|+|+ |--||||++.-|+..|...|++|.++-
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEEC
Confidence 35799999 667999999999999999999998874
No 416
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=80.28 E-value=0.9 Score=40.64 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.|+ |-.|+||||+|..||.. |.+|+.|+...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4555 77899999999998854 77899999865
No 417
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.23 E-value=1.2 Score=40.06 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
++|+++ |..|+||||++-.|+..+
T Consensus 7 ~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 477777 889999999998887665
No 418
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=79.87 E-value=2.3 Score=41.63 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=29.3
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+||+|-|- -||+|||-++..||..|. ++++.+|-=-.
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRGY 74 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRGY 74 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECCC
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeecc
Confidence 48888776 799999999999999994 45677765443
No 419
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=79.85 E-value=3.4 Score=44.30 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (516)
..+.++|+|||+.-.........+..+|.+++|+..+... .......+..+...+++.+-+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999875443333334455689999999887532 12455666677777877677889997643
No 420
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=79.74 E-value=5.2 Score=37.54 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=30.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~ 213 (516)
.|++.|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 8 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGR-----AIAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 368999999999887 577889999999999987653
No 421
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=79.72 E-value=6.3 Score=34.76 Aligned_cols=86 Identities=7% Similarity=0.001 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEecccccC-CCc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDA-DGK 351 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~~-~~~ 351 (516)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++... ..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 149 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRH- 149 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC--------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhc-
Confidence 4678999998642211222222345788888887654 355666666666654 2344 568889977533 11
Q ss_pred cccccCCchHHHHHHHhCC
Q 010156 352 RYYPFGRGSGSQVVQQFGI 370 (516)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~ 370 (516)
....+...++.+.++.
T Consensus 150 ---~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 150 ---QVRLDMAQDWATTNTL 165 (208)
T ss_dssp ---CCCHHHHHHHHHHTTC
T ss_pred ---cCCHHHHHHHHHHcCC
Confidence 1112345566666664
No 422
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.61 E-value=1.5 Score=39.73 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~ 201 (516)
+.+.|+ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 355555 899999999999999888643
No 423
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.26 E-value=2.5 Score=39.89 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+-+.++ |..|+|||++|..+|..+ |.+++.++
T Consensus 65 ~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 65 VSVLLE-GPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 456665 889999999999998874 55655554
No 424
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.18 E-value=2.1 Score=39.99 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
-+.++ |..|+||||++..+|..+ +..+..++
T Consensus 47 ~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 47 GVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred eEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 46666 889999999999999876 44555554
No 425
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=79.17 E-value=2.2 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.0
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
..++|+|+ |--||||++.-|+..|...|++|.++-
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~g 179 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLIG 179 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEEC
Confidence 45799999 667999999999999999999998763
No 426
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.06 E-value=1.1 Score=43.79 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=28.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++++++ |--|+||||+.-.|+... .|+|+.+|..|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 3456665 889999999987776543 689999998775
No 427
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.05 E-value=1.3 Score=39.64 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
+.+|+++ |-.|+||||++-.|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3578887 889999999999888764
No 428
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.05 E-value=1.7 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID 209 (516)
+.+..|-.|+||||+.+.++..|.+ .+.+|+++-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455688999999999999999887 678888763
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=79.02 E-value=1.4 Score=40.14 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
+|.|. |..|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45666 889999999999999876
No 430
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=78.78 E-value=2 Score=44.19 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.3
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34799999 66799999999999999999999886
No 431
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.66 E-value=1.6 Score=45.72 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.+.++ |..|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 456655 889999999999998887 7888877764
No 432
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=78.60 E-value=2.3 Score=44.28 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
..++|+|+ |--||||++.-|+..|...|+||.++
T Consensus 63 ~~~vI~Vt---GTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIA---GTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SSCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEe---CCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 34699999 55689999999999999999999765
No 433
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.49 E-value=1.3 Score=41.83 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|+++ |..|+||||++..||..| |. -.+|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 3567777 889999999999999877 43 4667764
No 434
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.45 E-value=1.4 Score=39.97 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=19.6
Q ss_pred cccCcc-eEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 168 GLQKIS-NIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 168 ~~~~~~-kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
+++.+. ++|++ +|..|+||||+...|+..+
T Consensus 13 ~~~~~~g~~ivl-~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVL-IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 344433 45555 5999999999998887654
No 435
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.41 E-value=1.6 Score=38.80 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La 199 (516)
.++++ |..|+||||+.-.|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 46676 8999999999999998884
No 436
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.38 E-value=1.8 Score=43.23 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
..|.++ |..|+|||++|..+|..+ |.++..+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 346666 889999999999999877 67788887654
No 437
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=78.21 E-value=2 Score=48.91 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHH--HH-HCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~--La-~~G~rVllID~D~ 212 (516)
.++|+|+ |-||+||||+|..++.. .. +....++.++.+.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4688887 88999999999998853 23 3355688888864
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.05 E-value=2.6 Score=40.30 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
.+.+.++ |..|+||||++..+|..+ +....-+++
T Consensus 54 ~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 4566666 889999999999888765 455555544
No 439
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=78.04 E-value=1.7 Score=39.78 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.-|+++ |--|+||||++..|+. .|.. +||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~----~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA----RGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH----TTCE--EEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH----CCCc--EEECcH
Confidence 4578888 7788999999887654 5764 578886
No 440
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.61 E-value=2.4 Score=42.01 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.|.++ |..|+|||++|..+|..+ |..++.+++.
T Consensus 117 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 4467776 889999999999998764 6677777663
No 441
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=77.53 E-value=8.1 Score=34.54 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 010156 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (516)
Q Consensus 280 ~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (516)
.+.+.|+|+|+.-.........+..+|.+++|+..+. .++..+...++.+... +. .+-+|.|+++.....
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~-piilV~NK~Dl~~~~---- 157 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP-DIVLIGNKADLPDQR---- 157 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCC-EEEEEEECTTCGGGC----
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCC-CEEEEEECCcccccc----
Confidence 5678999998632211222222446788888888654 3444554444444332 23 356888997653211
Q ss_pred ccCCchHHHHHHHhCCC
Q 010156 355 PFGRGSGSQVVQQFGIP 371 (516)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (516)
.......+++.+.++.+
T Consensus 158 ~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 158 EVNERQARELADKYGIP 174 (217)
T ss_dssp CSCHHHHHHHHHHTTCC
T ss_pred ccCHHHHHHHHHHCCCc
Confidence 11223455666666654
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.34 E-value=1.5 Score=39.90 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.|.|+ |..|+||||+|..|| ++|. -+|..|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 4567766 899999999887654 5566 455555
No 443
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.10 E-value=2.8 Score=38.55 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=30.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.+..+ .|--|+||||....++..+..+|++|+++-.
T Consensus 28 G~I~vi-tG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECI-TGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 344444 4778999999999999999999999999944
No 444
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=77.08 E-value=2.2 Score=37.93 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCc
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 204 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r 204 (516)
.+-|.|. +..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 3457776 8899999999887654 6775
No 445
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.07 E-value=2.4 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+-+.++ |..|+||||++..+|..+ +.++..+++.
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 346666 889999999999887764 6677766653
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=76.86 E-value=1.9 Score=39.83 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=26.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.+|+++ |-.|+||||++..||..| |. ..+|.|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l---g~--~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF---GF--TYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--ceecCCC
Confidence 4578887 889999999999888766 53 4678774
No 447
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=76.71 E-value=1.8 Score=40.34 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.7
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999988888886 57888999999999998654
No 448
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=76.63 E-value=2.2 Score=47.36 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 208 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllI 208 (516)
+.+..|-.|+||||+.+.++..|.+ .|.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4556699999999999999999887 67888876
No 449
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=76.58 E-value=2.4 Score=43.23 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=29.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.|+ |..|+|||++...+...+.+.|.+|+++|..
T Consensus 56 ~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 56 LLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4555 7789999999888888888899999999864
No 450
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=76.57 E-value=2.7 Score=43.22 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 207 (516)
++|+|+ |--||||++.-++..|...|++|.+
T Consensus 113 ~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 113 QLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 799999 5678999999999999999998855
No 451
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.56 E-value=2.7 Score=41.12 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~ 201 (516)
..+. .+|..|+|||+++-.++..|...
T Consensus 46 ~~ll-i~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 46 KLFY-ITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CEEE-EECCCSHHHHHHHHHHHHHHHHT
T ss_pred CeEE-EECCCCCCHHHHHHHHHHHHHHH
Confidence 3454 45999999999999999999753
No 452
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.32 E-value=3.1 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+-|.++ |..|+|||++|..+|..+ .+..+..+++
T Consensus 46 ~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp SEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred ceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 467776 889999999999999876 3455665555
No 453
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.25 E-value=1.3 Score=39.44 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=23.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHH-CCCcE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARV 205 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rV 205 (516)
++|+++ |..|+||||+.-.|+..+.. .|..+
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCCccceEEe
Confidence 467776 88999999999998887752 34433
No 454
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=75.94 E-value=1.8 Score=40.62 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 205 (516)
|++|+++ |+.|+||||++..|+.. .|.++
T Consensus 1 m~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 4688887 78999999998877543 46655
No 455
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=75.58 E-value=1.8 Score=39.72 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.7
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+.|+|.|+++-||.|+ .+|..|+++|++|.+++-+.
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 35678999988888886 67788889999999998653
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.56 E-value=1.8 Score=39.97 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=26.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
.+.+|+|. |.-|+||||++-.|+.. |.+|.+..-+
T Consensus 19 ~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 35688888 88999999998877765 5567766543
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.48 E-value=1.5 Score=40.63 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La 199 (516)
++.|+|. |--|+||||++..|+..|.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 3567777 7799999999999998773
No 458
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=75.46 E-value=1.7 Score=39.89 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999988888886 56788899999999998764
No 459
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=75.31 E-value=2.1 Score=39.52 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.+|+|. +--|+||||++..||..| |.+ ++|.|.
T Consensus 15 ~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 15 LIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 466665 889999999999999887 554 578765
No 460
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=75.25 E-value=1.9 Score=49.84 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.8
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHHH----CCCcEEEEEcCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 212 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllID~D~ 212 (516)
+..++|+|+ |-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 445788887 89999999999988876532 234677888754
No 461
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.22 E-value=2.7 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.014 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++.|+ |-.|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~-G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVL-GLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 355554 889999999999988775 34688898864
No 462
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=75.22 E-value=1.1 Score=40.71 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+|+++ |-.|+||||++..||..+ |. -++|.|.
T Consensus 5 ~i~i~-G~~gsGkst~~~~l~~~~---g~--~~~~~d~ 36 (219)
T 2h92_A 5 NIALD-GPAAAGKSTIAKRVASEL---SM--IYVDTGA 36 (219)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhc---CC--ceecCCh
Confidence 56666 889999999998887755 54 4678774
No 463
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.88 E-value=2.6 Score=41.74 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
+.|.++ |-.|+|||++|..+|..+ |.+.+.+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 356666 889999999999999887 6777777764
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=74.87 E-value=1.4 Score=45.50 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCC-cEEEEEcCCCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVYG 214 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllID~D~~~ 214 (516)
+.++++. |..|+||||+.-.|+-.+...+- +++.+|.|+..
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 4578888 88999999999999888765444 65678887643
No 465
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.86 E-value=1.8 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La 199 (516)
++++++ |..|+||||+.-.|+..+.
T Consensus 5 ~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 467777 8899999999998887663
No 466
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=74.78 E-value=2.5 Score=38.38 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=30.4
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllID~D~~ 213 (516)
.|||+|.|+++-||.|+ .++..|+ +.|++|.+++-++.
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQLK 41 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSHH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCcc
Confidence 46788999988888886 5667777 79999999987643
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.43 E-value=1.9 Score=39.37 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
-|.|+ |..|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 46665 999999999999999987
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.32 E-value=2.5 Score=40.71 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
+.|.++ |..|+||||++..+|..+ +...+.++
T Consensus 50 ~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 50 KGVLFY-GPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp SEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred ceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 456666 889999999999998765 45555554
No 469
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.03 E-value=3.2 Score=42.00 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
++|+|+ |-.|+||||++..||..+. .-+|.+|-
T Consensus 3 ~~i~i~-GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIA-GTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEEE-ECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEEE-CcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 355554 7889999999999998873 34688885
No 470
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=73.89 E-value=2.5 Score=39.30 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 468999988888887 47778889999999998664
No 471
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.78 E-value=4.3 Score=39.46 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+-|.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 52 ~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 456666 889999999999998875 556666654
No 472
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=73.78 E-value=2.5 Score=39.09 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
.|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 468999988888887 57788899999999998765
No 473
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=73.74 E-value=10 Score=39.32 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=36.8
Q ss_pred CCCCEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~---------~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+++.++|+|||+-.... ..+...+..+|.+++|+..+.. +..+ ..+++.+. +.+ +-+|+|+++.
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~il~~l~--~~p-iivV~NK~DL 362 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED-RKILERIK--NKR-YLVVINKVDV 362 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH-HHHHHHHT--TSS-EEEEEEECSS
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHH-HHHHHHhc--CCC-EEEEEECccc
Confidence 34568999998743011 1112224467899998876543 3333 34445552 445 4588899765
No 474
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.68 E-value=2.3 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG 200 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~ 200 (516)
+.++ |..|+|||+++-.||..+..
T Consensus 204 ~LL~-G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 204 PVLI-GEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEE-SCTTTTTHHHHHHHHHHHHS
T ss_pred eEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 4454 99999999999999999876
No 475
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=73.50 E-value=2.8 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.2
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllID~D~ 212 (516)
+++.|+|+++ |+.|. .++..|.+.| ++|.++|-++
T Consensus 4 ~~~~v~I~G~-G~iG~-----~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQ-----MIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECC-SHHHH-----HHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECC-CHHHH-----HHHHHHHhCCCceEEEEeCCH
Confidence 4567888877 88776 4566788889 9999998765
No 476
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=73.48 E-value=3.6 Score=42.12 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
.++|+|+ |--||||++.-|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4699999 66789999999999999999998865
No 477
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=73.41 E-value=2.6 Score=39.85 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.5
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.|++.|+++-||.|+ .+|..|++.|.+|.++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4578999999999887 67888999999999998653
No 478
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.37 E-value=1.5 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.++ |..|+|||++|..++....+.+...+.+++..
T Consensus 28 vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 28 VLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp EEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred EEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 5555 99999999999999988777778888888754
No 479
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=72.30 E-value=2.7 Score=38.79 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=29.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999988998886 67888999999999998764
No 480
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=72.02 E-value=2.8 Score=40.64 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
+.+.+|..|+|||+++..+|..+ |.+++-+++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 44556889999999999998776 667777774
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.00 E-value=1.4 Score=44.84 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+++|.+ .|-.|+||||++..|+..+ | ...||.|.
T Consensus 258 ~~lIil-~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVA-VGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp CCEEEE-ESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 345544 5999999999999887644 3 34566654
No 482
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=71.91 E-value=2.2 Score=39.87 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGM-----GSALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHH-----HHHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999999997 47788899999999987664
No 483
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.82 E-value=2.7 Score=36.47 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
.++++. |.-|+||||+.-.|+..+
T Consensus 34 e~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 478887 889999999999999887
No 484
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.80 E-value=3.2 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH-CCCcEEEEE
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID 209 (516)
+.++.|-.|+|||++.+.+...|.+ .+.+|+++-
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4555688999999999999988876 688998874
No 485
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.57 E-value=4.1 Score=41.44 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=29.6
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D 211 (516)
...+|+|+ |..|+||||+...|+..+...+.+|..++-+
T Consensus 166 ~ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 34567776 8999999999999988886555577776643
No 486
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.29 E-value=10 Score=37.10 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 209 (516)
..+++|+ |..|+||||+...|+..+.... ..+.++
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3577777 7889999999888887765433 344554
No 487
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=71.11 E-value=3.9 Score=42.96 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=28.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 208 (516)
.++|+|+ |--||||++.-++..|...|+++.++
T Consensus 122 ~~vIaVT---GTnGKTTTt~li~~iL~~~G~~~~~~ 154 (524)
T 3hn7_A 122 RHVIAVA---GTHGKTTTTTMLAWILHYAGIDAGFL 154 (524)
T ss_dssp SEEEEEE---CSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcEEEEE---CCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 4799999 66799999999999999999887543
No 488
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=71.06 E-value=10 Score=29.34 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=52.8
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHh-cCCCeeeeEE
Q 010156 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDM-FEQRANEVVL-AIPWVNKVNV 150 (516)
Q Consensus 74 ~~~~~~v~~aL~~V~DPel~~~iv~lg~I~~v~v~~~~~~v~v~l~lt~~~cp~~~~-l~~~v~~aL~-~l~gv~~v~v 150 (516)
+...+.|.++|.+ .-|-|. -+=|=|+-+.+++ +.|.|.|.-.+.+||.... +...|++.|+ .+|+++.+..
T Consensus 6 ~~~~~~I~~~L~~-IRP~L~---~dGGdvelv~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~ 78 (88)
T 1xhj_A 6 PTMFDQVAEVIER-LRPFLL---RDGGDCTLVDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp SCHHHHHHHHHHH-HHHHHH---HHSCEEEEEECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHHHHH-hcHHHH---hcCCeEEEEEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3457789999988 677553 2345566666765 8999999999999998876 6667888886 5788777643
No 489
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=70.94 E-value=3 Score=38.49 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 2 ~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 36 (250)
T 2cfc_A 2 SRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA 36 (250)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999988888876 57788899999999998653
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=70.92 E-value=1 Score=42.48 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.7
Q ss_pred CcceEEEEEeCCCCChHHHHHHHHHHHH
Q 010156 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (516)
Q Consensus 171 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 198 (516)
..++.|+|. |--|+||||++..||..|
T Consensus 22 ~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345677777 889999999999888776
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.67 E-value=3.4 Score=40.13 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=24.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 205 (516)
+.+++|+ |..|+||||+...|+..+ .| +|
T Consensus 126 Ge~vaIv-GpsGsGKSTLl~lL~gl~--~G-~I 154 (305)
T 2v9p_A 126 KNCLAFI-GPPNTGKSMLCNSLIHFL--GG-SV 154 (305)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhhhc--Cc-eE
Confidence 3588888 888999999999999988 55 45
No 492
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=70.66 E-value=3 Score=38.95 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=29.4
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
|.|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (256)
T 1geg_A 1 MKKVALVTGAGQGIGK-----AIALRLVKDGFAVAIADYND 36 (256)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999988888886 57888999999999998654
No 493
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=70.66 E-value=3.4 Score=38.39 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.1
Q ss_pred cceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 172 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
..|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 3578999988888886 68889999999999998654
No 494
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=70.49 E-value=3.8 Score=42.33 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 010156 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (516)
Q Consensus 279 ~~yD~VIID~pp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (516)
+.+.+.|+|||+..............+|.+++|+....-.+ ....+.+..+...+++.+-+++|+++.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45679999998753322222223456899999988765432 234455566667788756688899775
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=70.41 E-value=4.5 Score=40.08 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=25.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEc
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~ 210 (516)
-|.++ |..|+|||++|..+|..+ |..++.+++
T Consensus 86 ~iLL~-GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 86 GILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CEEEE-CSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 46666 889999999999999887 556666654
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.38 E-value=4.2 Score=44.74 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 010156 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (516)
Q Consensus 175 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~~~ 214 (516)
.+.|+ |-.|+|||++|..+|..+...+.+++.||+....
T Consensus 523 ~~Ll~-Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFL-GPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEE-SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 46666 8899999999999999998888899999986543
No 497
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=70.20 E-value=2.8 Score=37.87 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHH
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La 199 (516)
+.++++. |..|+||||+.-.|+..+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 3578887 8899999999998887763
No 498
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.15 E-value=2.4 Score=37.09 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.4
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 010156 174 NIVAVSSCKGGVGKSTVAVN 193 (516)
Q Consensus 174 kvI~v~s~KGGvGKTT~a~n 193 (516)
.++++. |..|+||||++-.
T Consensus 10 ei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEE-CCTTSCHHHHHHH
T ss_pred EEEEEE-CCCCCCHHHHHHH
Confidence 478877 9999999999885
No 499
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.15 E-value=2.3 Score=41.77 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 010156 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (516)
Q Consensus 176 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID~D~ 212 (516)
+.|+ |..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 5665 88999999999999999876554444555443
No 500
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=70.10 E-value=3.9 Score=42.24 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 010156 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (516)
Q Consensus 173 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 207 (516)
.++|+|+ |--||||++.-|+..|...|++|.+
T Consensus 114 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTV 145 (469)
T ss_dssp CCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4699999 6678999999999999999998743
Done!