Query 010158
Match_columns 516
No_of_seqs 161 out of 1149
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 21:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0201 SecY Preprotein transl 100.0 1.4E-80 2.9E-85 657.0 30.4 356 142-514 4-385 (436)
2 PRK09204 secY preprotein trans 100.0 6.5E-79 1.4E-83 647.5 32.4 353 149-514 7-380 (426)
3 PRK12907 secY preprotein trans 100.0 3.6E-78 7.7E-83 641.7 31.8 346 152-514 10-382 (434)
4 CHL00161 secY preprotein trans 100.0 3.5E-75 7.6E-80 617.7 30.2 346 149-514 3-368 (417)
5 PRK08568 preprotein translocas 100.0 2.2E-73 4.9E-78 610.0 31.5 356 134-514 3-417 (462)
6 TIGR00967 3a0501s007 preprotei 100.0 9E-74 1.9E-78 605.9 27.8 343 157-514 1-366 (410)
7 PRK12417 secY preprotein trans 100.0 6.6E-73 1.4E-77 597.3 29.5 329 148-514 4-354 (404)
8 PTZ00219 Sec61 alpha subunit; 100.0 1.8E-70 3.9E-75 588.6 28.4 358 131-514 4-436 (474)
9 TIGR02920 acc_sec_Y2 accessory 100.0 1.7E-67 3.7E-72 555.3 29.2 325 155-514 1-347 (395)
10 PF00344 SecY: SecY translocas 100.0 4.8E-62 1E-66 506.3 22.1 289 211-514 1-315 (346)
11 KOG1373 Transport protein Sec6 100.0 1.8E-50 3.8E-55 411.0 19.1 357 129-511 1-431 (476)
12 PF10559 Plug_translocon: Plug 88.9 0.15 3.3E-06 36.5 0.5 22 168-189 1-22 (35)
13 PF04923 Ninjurin: Ninjurin ; 59.7 27 0.00058 31.0 6.0 45 218-262 45-90 (104)
14 CHL00161 secY preprotein trans 45.0 3.8E+02 0.0083 29.3 13.2 25 314-339 383-407 (417)
15 PRK10582 cytochrome o ubiquino 28.5 2.3E+02 0.005 25.4 6.8 50 256-305 47-100 (109)
16 TIGR02847 CyoD cytochrome o ub 25.3 2.8E+02 0.0062 24.3 6.7 50 256-305 36-89 (96)
17 PRK12907 secY preprotein trans 24.0 4.2E+02 0.009 29.3 9.2 26 313-339 396-421 (434)
18 TIGR02901 QoxD cytochrome aa3 21.6 3.7E+02 0.008 23.5 6.6 49 257-305 39-91 (94)
19 PF10066 DUF2304: Uncharacteri 21.2 5.8E+02 0.013 22.5 8.4 32 305-336 51-83 (115)
20 COG3125 CyoD Heme/copper-type 20.2 3.6E+02 0.0078 24.4 6.4 56 256-311 49-108 (111)
No 1
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-80 Score=657.03 Aligned_cols=356 Identities=26% Similarity=0.418 Sum_probs=294.4
Q ss_pred hhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcCchhH
Q 010158 142 SVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQ 220 (516)
Q Consensus 142 ~~~~~~~~~~-~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SLFaLGI~Py 220 (516)
...|++.++. +.+++|||++||++++++||+|++||+||+|.++..+.+.+...+.++.+...||++++|+|+|||+||
T Consensus 4 ~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~Py 83 (436)
T COG0201 4 PLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPY 83 (436)
T ss_pred hhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHH
Confidence 3457788887 479999999999999999999999999999998775433222111111121226789999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccchHHHHHHHHHHH
Q 010158 221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHSVKHVMVTAFLLV 297 (516)
Q Consensus 221 ItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~---~~~~~~~~~~~~~ivl~Lv 297 (516)
||||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++. ...+. ....+.+..++++++++|+
T Consensus 84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~-~~~~~~~~~~~~~~~~~~~~l~il~L~ 162 (436)
T COG0201 84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVL-GGNNGGSPSDVGNGGIFFYLLIILQLT 162 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCcccccccchHHHHHHHHHHH
Confidence 9999999999878999999999999999999999999999999999999974 33321 1111223567889999999
Q ss_pred HHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHHHhhheeccEE
Q 010158 298 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCR 375 (516)
Q Consensus 298 aGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~--~~~~~~il~~lli~ilii~~iV~v~~a~r 375 (516)
+|||++|||||+|||||||||+||+|++||++++|+.+.+.......+. .++.. .++.++.++++++++||+|++||
T Consensus 163 ~Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~~r 241 (436)
T COG0201 163 AGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQARR 241 (436)
T ss_pred HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhheEE
Confidence 9999999999999999999999999999999999999998775544432 12221 23455566777888999999999
Q ss_pred EEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCc-------hHHHHHHHcCCCC
Q 010158 376 KVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNPET 448 (516)
Q Consensus 376 rIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~-------~~~~l~~~l~p~~ 448 (516)
||||||+|++. +.++++|+|+|+|||||||+||||+++++|.+++++++++ |...+..++.|.
T Consensus 242 ~IPI~y~~~~~---------~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~- 311 (436)
T COG0201 242 RIPIQYAKRQS---------YRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPG- 311 (436)
T ss_pred Eeehhhhhhhh---------cCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCC-
Confidence 99999998431 2357899999999999999999999999999999998622 334566666654
Q ss_pred cCCCCCchhheeeehhhhh---------cChHHHHHHhh--c-cccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 449 SVGARPWVYYTIYAFFVFL---------FNIFDIVSILY--T-LLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 449 sl~~~~~iy~lly~llIi~---------Fnp~diAe~Lk--g-~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
.|+|+.+|++++++ +||+|+||||| | +|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 312 -----~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iail 385 (436)
T COG0201 312 -----SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAIL 385 (436)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999886 49999999999 4 9999999999999999999 9999999999999875
No 2
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=6.5e-79 Score=647.50 Aligned_cols=353 Identities=28% Similarity=0.488 Sum_probs=291.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHH
Q 010158 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASI 225 (516)
Q Consensus 149 ~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItASI 225 (516)
..++++|+|+|++||++++++||+|++||+||+|.++.+|.+ +..+++++++.+ + ||++++|+|+|||+|||||||
T Consensus 7 ~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~-~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsI 85 (426)
T PRK09204 7 NAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLF-DQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASI 85 (426)
T ss_pred hHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHH-hhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHH
Confidence 345679999999999999999999999999999998764322 221123555544 3 578999999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccccchHHHHHHHHHHHHHHH
Q 010158 226 LMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS----IYAASHSVKHVMVTAFLLVCGAM 301 (516)
Q Consensus 226 ImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~----~~~~~~~~~~~~~ivl~LvaGs~ 301 (516)
+||||+.++|+++|++||||+||+|+|++|||+|+++|++||++++.....+. .....++..++++++++|++|++
T Consensus 86 i~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~ 165 (426)
T PRK09204 86 IMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTM 165 (426)
T ss_pred HHHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999863222121 11111134467789999999999
Q ss_pred HHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEEee
Q 010158 302 TMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 381 (516)
Q Consensus 302 ~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy 381 (516)
+++||||+|||||+|||+|++|++||++++|+++.+.+.....+..++.. +++.+++++++++++||+|++|||||+||
T Consensus 166 i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~rIPi~~ 244 (426)
T PRK09204 166 FLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILV-FLLLIVLFLAVIAFVVFVEQAQRRIPVQY 244 (426)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH-HHHHHHHHHHHHHHHheeeeeEEEEEEEe
Confidence 99999999999999999999999999999999998877543323233332 24445556677888999999999999999
Q ss_pred ccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCc-hHHHHHHHcCCCCcCCCCCchhhee
Q 010158 382 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVYYTI 460 (516)
Q Consensus 382 ~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~-~~~~l~~~l~p~~sl~~~~~iy~ll 460 (516)
+++ ..++ +.++++++|+|+|+||+||||+|||++++++|++++++.++. |.+.+.++++|. +|+|.++
T Consensus 245 ~~~--~~~~---~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 313 (426)
T PRK09204 245 AKR--QVGR---KMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPG------SPLYILL 313 (426)
T ss_pred hhh--hccc---cccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCC------ChHHHHH
Confidence 973 2332 234467899999999999999999999999999999985443 556677888764 4889999
Q ss_pred eehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 461 YAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 461 y~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
|++++++ +||+|+||||| ++|||+|||++|+|||+|++ |+|++||++++++|++
T Consensus 314 y~~lii~Fs~fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~ 380 (426)
T PRK09204 314 YALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALL 380 (426)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9988876 49999999999 49999999999999999999 9999999999999975
No 3
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.6e-78 Score=641.69 Aligned_cols=346 Identities=21% Similarity=0.350 Sum_probs=275.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHHHH
Q 010158 152 FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILMQ 228 (516)
Q Consensus 152 ~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItASIImQ 228 (516)
+++|+|+|++||++++++||+|++||+||+|.++++. .+. +.+.++.+ | |+++++|+|+|||+|||||||+||
T Consensus 10 ~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~--~~~--~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~Q 85 (434)
T PRK12907 10 RVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV--QDQ--ANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQ 85 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh--hhh--hhHHHHHHHHhccccccChHHHHccHHHHHHHHHHH
Confidence 3689999999999999999999999999999876531 111 12233323 3 678999999999999999999999
Q ss_pred HHHh-HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c-cccccchHHHHHHHHHHHHHHHHHH
Q 010158 229 VLCH-IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--I-YAASHSVKHVMVTAFLLVCGAMTMS 304 (516)
Q Consensus 229 LL~~-~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~--~-~~~~~~~~~~~~ivl~LvaGs~~lm 304 (516)
||+. .+|++++++||||+||||+|+||||+|+++|++||++++. .+... . ...+.++.+.++++++|++|||++|
T Consensus 86 LL~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~ 164 (434)
T PRK12907 86 LLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSY-GFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLL 164 (434)
T ss_pred HHHhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCCccccCccHHHHHHHHHHHHHHHHHHH
Confidence 9964 6999999999999999999999999999999999999863 33210 0 0111233346777899999999999
Q ss_pred HHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHH-Hhh-cCC---cccHHHHHHHHHHHHHHHHHhhheeccEEEEEE
Q 010158 305 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLS-QLL-GSS---VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKL 379 (516)
Q Consensus 305 WL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~-~~~-~~~---~~~~~~il~~lli~ilii~~iV~v~~a~rrIPI 379 (516)
||||+|||||+|||+|++|++||++++|+++.+.+. ... .+. .+.. ..++++++++++++++||+|++|||||+
T Consensus 165 WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~v~v~~~~rrIPi 243 (434)
T PRK12907 165 WLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHII-KMLLIGLVILAIVVGVIYIQQAVRKIPI 243 (434)
T ss_pred HHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHH-HHHHHHHHHHHHHHHHhheeeeeEEEEE
Confidence 999999999999999999999999999988866432 111 121 0111 1122333445667789999999999999
Q ss_pred eeccccccccccCCCCCCC-CCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCc-hHHHHHHHcCCCCcCCCCCchh
Q 010158 380 QYYGFKLASAAREDSPITE-VEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVY 457 (516)
Q Consensus 380 qy~~~~~~~g~~~~~~~~~-~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~-~~~~l~~~l~p~~sl~~~~~iy 457 (516)
||+++ ++++ +.+++ +++|+|+|+|+|||||+||||+++++|+++++++++. +..++..++++. +++|
T Consensus 244 ~ya~r--~~~~---~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~ 312 (434)
T PRK12907 244 QYAKA--VSGN---NQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFA------HPIG 312 (434)
T ss_pred EEchh--hccc---cccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCC------CcHH
Confidence 99973 4442 23444 5789999999999999999999999999999997432 234455566654 3678
Q ss_pred heeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 458 YTIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 458 ~lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
.++|++++++ +||+|+||||| ++|||+|||++|++||+|++ |+|++||+|++++|++
T Consensus 313 ~~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~l 382 (434)
T PRK12907 313 MTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISIL 382 (434)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888887775 49999999998 49999999999999999999 9999999999999975
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=3.5e-75 Score=617.66 Aligned_cols=346 Identities=28% Similarity=0.466 Sum_probs=280.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHH
Q 010158 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASI 225 (516)
Q Consensus 149 ~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItASI 225 (516)
+.++++|+|+|++||++++++||+|++||+||+|.+...+.+ +. ++++++.+ + |+.+++|+|+|||+|||||||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~-~~--~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsI 79 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSL-SN--NPLLNLLNTFSGGGFFVIGLFALGILPYINASI 79 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhh-cc--ccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHH
Confidence 456788999999999999999999999999999987653211 11 23444444 2 568899999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Q 010158 226 LMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMS 304 (516)
Q Consensus 226 ImQLL~~~iP~L~kl~ke-ge~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~ivl~LvaGs~~lm 304 (516)
||||++.++|++++++|| ||+||||+|+||||+|+++|++||++++.+. ..... +.+..+.++++++|++|+++++
T Consensus 80 I~QLl~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~-~~~~~--~~~~~~~~~~v~~L~~Gt~~~~ 156 (417)
T CHL00161 80 IIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL-KPYLF--NWNLLLALEIVLALTSGSMIVL 156 (417)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc--CcchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999997 9999999999999999999999999997432 21111 1233467789999999999999
Q ss_pred HHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccc
Q 010158 305 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 384 (516)
Q Consensus 305 WL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~ 384 (516)
||||+|||||+|||+|++|++||++++|+.+.+.+.... +..+.+. .+.+++++++++++++++|++|||||+||+++
T Consensus 157 wL~e~it~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~ 234 (417)
T CHL00161 157 WLSELITEKGLGNGSSLLIFFNIVSNLPKLLQSLLFSLS-ANITILS-ILLLLFLFFITLIGIIFLQEAIRKIPLISAKQ 234 (417)
T ss_pred HHHHHHHhcCcCcchHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHH-HHHHHHHHHHHHHHHHHhhcceEEEEEEEhhh
Confidence 999999999999999999999999999999876654322 2122121 12333455666788999999999999999963
Q ss_pred cccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCchHHH---HHHHcCCCCcCCCCCchhheee
Q 010158 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH---VKEILNPETSVGARPWVYYTIY 461 (516)
Q Consensus 385 ~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~~~~~---l~~~l~p~~sl~~~~~iy~lly 461 (516)
. + ++...++++|+|+|+||+|+||+|||++++++|+++++++.+.++.. ...++++. .++|.++|
T Consensus 235 ~---~---~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~------~~~y~~~y 302 (417)
T CHL00161 235 L---G---KSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASF------KILYLVLY 302 (417)
T ss_pred h---c---cccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcc------cHHHHHHH
Confidence 2 1 11234568999999999999999999999999999999985543332 22333322 47889989
Q ss_pred ehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 462 AFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 462 ~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++++++ +||+|+||||| ++|||+|||++|+|||+|++ |+|++||++++++|++
T Consensus 303 ~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~ 368 (417)
T CHL00161 303 FVLILFFSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALL 368 (417)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888775 49999999999 49999999999999999999 9999999999999976
No 5
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.2e-73 Score=610.02 Aligned_cols=356 Identities=16% Similarity=0.147 Sum_probs=285.3
Q ss_pred hHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccch
Q 010158 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (516)
Q Consensus 134 ~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SL 212 (516)
|||.+|+.... ||+++|.+++++|+|++||++++++||+|++||+||+|.++ .| . +..++.+.|.+++|+
T Consensus 3 ~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~-~-------l~~l~~~~gg~~~sl 73 (462)
T PRK08568 3 FLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QD-L-------FELLRIIFAGSFGTL 73 (462)
T ss_pred HHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-cc-H-------HHHHHHHhCCcccch
Confidence 68999999666 99999999999999999999999999999999999999875 22 1 122223444458999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccchHHHHH
Q 010158 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIY-AASHSVKHVMV 291 (516)
Q Consensus 213 FaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~-~~~~~~~~~~~ 291 (516)
|+|||+|||||||||||++.. ++.+++++.|+||+|+|++|||+|+++|++||++++... .+... +...+..+.++
T Consensus 74 f~LGI~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~-~~~~~~~~~~~~~~~~~ 150 (462)
T PRK08568 74 LQLGIGPIVTAGIILQLLVGS--KLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAG-AFGPATGLASTPLLALL 150 (462)
T ss_pred HHhCcHHHHHHHHHHHHHhhC--chheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccHHHHHH
Confidence 999999999999999999754 444666667999999999999999999999999997432 22111 00123446778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHH---------------HHhhcCC--cccH----
Q 010158 292 TAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKML---------------SQLLGSS--VRWW---- 350 (516)
Q Consensus 292 ivl~LvaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~---------------~~~~~~~--~~~~---- 350 (516)
++++|++|++++|||||+|||||+|||+|++|++||++++|+++.+.+ .....+. .+.+
T Consensus 151 i~l~L~~Gt~i~~wL~E~Itk~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~ 230 (462)
T PRK08568 151 IFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTR 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhccc
Confidence 899999999999999999999999999999999999999999987654 1111111 0111
Q ss_pred -HHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHH
Q 010158 351 -PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 429 (516)
Q Consensus 351 -~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~ 429 (516)
+. +..++++++++++++|+|++|||||+||+| .+ ++++|+|+|+||+|+||+||||+++++|++++
T Consensus 231 l~~-l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k---~~---------g~~s~iPiKln~aGvmPiIFassll~~p~~i~ 297 (462)
T PRK08568 231 GLL-LLGLITTIVIFLIVVYLESMRVEIPLSHGR---VR---------GARGRYPLKFIYVSVLPVILVRALQANIQLFG 297 (462)
T ss_pred ccH-HHHHHHHHHHHHHheeEEeeEEEEEEEecc---cc---------CCCceeeEEecccCcHHHHHHHHHHHHHHHHH
Confidence 22 344555667788899999999999999986 22 25689999999999999999999999999999
Q ss_pred hhcCCc---h-----------HHHHHHHcCCCCcCC--CCCch----hheeeehhhhh----------cChHHHHHHhh-
Q 010158 430 SILGSP---F-----------WQHVKEILNPETSVG--ARPWV----YYTIYAFFVFL----------FNIFDIVSILY- 478 (516)
Q Consensus 430 ~~l~~~---~-----------~~~l~~~l~p~~sl~--~~~~i----y~lly~llIi~----------Fnp~diAe~Lk- 478 (516)
+++.+. + .+++.++++|+.+.. ..+++ |.++|++++++ +||+|+|||||
T Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk 377 (462)
T PRK08568 298 QLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQN 377 (462)
T ss_pred HHHhhcCchhhhhcccccccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 886321 2 256777888765431 12344 77777777665 49999999999
Q ss_pred --ccccccccCCc-cHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 479 --TLLFTITLGVN-DSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 479 --g~IpGiR~G~~-T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++|||+|||++ |+|||+|++ |+|++||++++++|++
T Consensus 378 ~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~l 417 (462)
T PRK08568 378 SGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVL 417 (462)
T ss_pred cCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999997 899999999 9999999999999986
No 6
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=9e-74 Score=605.88 Aligned_cols=343 Identities=27% Similarity=0.388 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccc---cccccccccccchhhcCchhHHHHHHHHHHHHh-
Q 010158 157 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD---ELGDFGAELKLSFFQLGISPQIVASILMQVLCH- 232 (516)
Q Consensus 157 rkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~---~l~~fga~~~~SLFaLGI~PyItASIImQLL~~- 232 (516)
|+|++||++++++||+|++||+||+|.++..+++ +. +++. ++...||++++|+|+|||+|||||||+|||++.
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~-~~--~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~ 77 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDI-QQ--NGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGD 77 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhh-cc--ccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999998764432 21 2222 223347899999999999999999999999975
Q ss_pred HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010158 233 IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISE 312 (516)
Q Consensus 233 ~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~ivl~LvaGs~~lmWL~E~IT~ 312 (516)
++|.+++++||||+||+|+|++|||+|+++|++||++++.... ++.. .+.+..+.++++++|++|+++++||||+|||
T Consensus 78 ~~~~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~-~~~~-~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~ 155 (410)
T TIGR00967 78 VPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGM-YGYV-GDPGAFFYLLIVIQLTTGSMIVMWLGEQITK 155 (410)
T ss_pred cChHHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999862222 1111 1234446788999999999999999999999
Q ss_pred cCCccchhHHHHHHHhhHHHHHHHHHHHHhh--cCC-cc---cHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccc
Q 010158 313 SGFGQGSSLIICVGILTGYTETLYKMLSQLL--GSS-VR---WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386 (516)
Q Consensus 313 ~GIGNGiSLII~~gIis~lp~~l~~~~~~~~--~~~-~~---~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~ 386 (516)
||+|||+|++|++||++++|+++.+.+.... .+. .+ ..+. ++.+++++++++++||+|++|||||+||+|++
T Consensus 156 ~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~- 233 (410)
T TIGR00967 156 YGIGNGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPF-LLYLIATIIVFAVVVFVQQARRKIPIQSAKRQ- 233 (410)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHH-HHHHHHHHHHHHHHheeeeeEEEEEEEEhhhh-
Confidence 9999999999999999999999988764211 111 11 1222 34455566778889999999999999999632
Q ss_pred cccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCchHHHHHHHcCCCCcCCCCCchhheeeehhhh
Q 010158 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVF 466 (516)
Q Consensus 387 ~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~~~~~l~~~l~p~~sl~~~~~iy~lly~llIi 466 (516)
.+++ .++++|+|+|+||+|+||+||||+++++|+++++++.+.+.. .++.+++.+++..+|+|.++|.++++
T Consensus 234 -~~~~-----~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~y~~lii 305 (410)
T TIGR00967 234 -GGRR-----GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGG--AWFLNPILSLSLSDPIGAILYLILII 305 (410)
T ss_pred -cCCC-----CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 1211 246799999999999999999999999999999997432111 11122222233335889999988877
Q ss_pred h---------cChHHHHHHhh--c-cccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 467 L---------FNIFDIVSILY--T-LLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 467 ~---------Fnp~diAe~Lk--g-~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
+ +||||+||||| | +|||+|||++|+|||+|++ |+|++||++++++|++
T Consensus 306 ~Fs~f~~~~~~~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~ 366 (410)
T TIGR00967 306 FFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALL 366 (410)
T ss_pred HHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 49999999999 4 9999999999999999999 9999999999999976
No 7
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=6.6e-73 Score=597.27 Aligned_cols=329 Identities=17% Similarity=0.265 Sum_probs=267.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc---cccccccchhhcCchhHHHHH
Q 010158 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD---FGAELKLSFFQLGISPQIVAS 224 (516)
Q Consensus 148 ~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~---fga~~~~SLFaLGI~PyItAS 224 (516)
.+.++++|+|+|++||++++++||+|++||+||+|.++..++. +.+..+.+ .|+++|+|+|+|||+||||||
T Consensus 4 ~~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~-----~~~~~~~~~fsGG~~~~~slfsLGI~PyItAs 78 (404)
T PRK12417 4 LKKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGH-----ESFLKIAAANTGGDLRTLNIFSLGLGPWMTSM 78 (404)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCcc-----chHHHHHHHhcccccccCcHHHHccHHHHHHH
Confidence 3467889999999999999999999999999999998764321 11222222 267899999999999999999
Q ss_pred HHHHHHHhH-hhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH
Q 010158 225 ILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTM 303 (516)
Q Consensus 225 IImQLL~~~-iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~ivl~LvaGs~~l 303 (516)
|+||||+.+ +|+++|++|| |.||+| ||+|+++|++||++++. .+.+.. .....+++.++++|++|++++
T Consensus 79 II~QLL~~~~~~~l~~~~ke-e~gr~~-----r~ltl~la~iQs~~~~~-~~~~~~---~~~~~~~~~~~l~L~aGt~~~ 148 (404)
T PRK12417 79 IILQLFSYRKRDGLMKQTIE-EQHYRE-----RILTLIIAVIQSLAVIL-SLPSKE---RISQTNILLNTLILVTGTMFL 148 (404)
T ss_pred HHHHHHHhCCCcchhhcChH-HHHHHH-----HHHHHHHHHHHHHHHHH-Hhcccc---cchhhHHHHHHHHHHHHHHHH
Confidence 999999998 8999999998 888864 99999999999999974 333211 111135678999999999999
Q ss_pred HHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeecc
Q 010158 304 SWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYG 383 (516)
Q Consensus 304 mWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~ 383 (516)
|||||+|||||+| |+|++|++||++++|+++.+.+... . .. ...+++++++++++++++|++|||||+||++
T Consensus 149 ~WL~E~it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~----~-~~--~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~ 220 (404)
T PRK12417 149 VWLSDLNARYGIG-GPMPIVLVSMIKSIPQDVIEYIDAS----H-IV--IILLILLVIITLFFLYFIELVEYRIPYNDIM 220 (404)
T ss_pred HHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH----H-HH--HHHHHHHHHHHHHHHHHHhheEEEEEEEEhh
Confidence 9999999999999 9999999999999999998776321 0 11 1222333444556789999999999999997
Q ss_pred ccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcC----C-chHHHHHHHcCCCCcCCCCCchhh
Q 010158 384 FKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG----S-PFWQHVKEILNPETSVGARPWVYY 458 (516)
Q Consensus 384 ~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~----~-~~~~~l~~~l~p~~sl~~~~~iy~ 458 (516)
+ +.++ .+++|+|+|+|+|||||+||||+++++|+++++++. + .+.++...++++. +|+|.
T Consensus 221 ~--~~~~-------~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 285 (404)
T PRK12417 221 N--HNRF-------KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFG------SPLGV 285 (404)
T ss_pred h--hccC-------CCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCC------CcHHH
Confidence 4 2322 157999999999999999999999999999999862 2 2333333445443 47899
Q ss_pred eeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 459 TIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 459 lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++|++++++ |||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|++
T Consensus 286 ~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~l 354 (404)
T PRK12417 286 TVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGI 354 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998886 49999999999 49999999999999999999 9999999999999985
No 8
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=1.8e-70 Score=588.61 Aligned_cols=358 Identities=16% Similarity=0.170 Sum_probs=282.7
Q ss_pred chhhHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccc
Q 010158 131 KNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 209 (516)
Q Consensus 131 ~~r~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~ 209 (516)
+.|++|.+|+.... ||+++|.++.++|+|++||++++++||+|++||+||+|.+...|+ +.++++..+..+
T Consensus 4 ~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~--------~~~~~~ifag~~ 75 (474)
T PTZ00219 4 MTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDP--------FYWMRVILASNR 75 (474)
T ss_pred cchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccch--------HHHHHHHHhcCc
Confidence 35678999998666 999999999999999999999999999999999999999765433 333444333449
Q ss_pred cchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Q 010158 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHV 289 (516)
Q Consensus 210 ~SLFaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~ 289 (516)
+|+|+|||+||||||||||||++. ++.+++++.+++|+|+|++|||+|+++|++||++++ ....++. ..+.++.+.
T Consensus 76 ~slf~LGI~PyItAsII~QLL~~~--~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~-~~~~~g~-~~~~~~~~~ 151 (474)
T PTZ00219 76 GTLMELGISPIVTSSMVMQLLAGS--KIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYV-WSGMYGD-ISEIGAGNA 151 (474)
T ss_pred chHHHhccHHHHHHHHHHHHHhhC--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccc-ccCccHHHH
Confidence 999999999999999999999753 344444445566999999999999999999999996 3322221 112234457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHhhHHHHHHHHH------------------HHH--hhcCC--
Q 010158 290 MVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKM------------------LSQ--LLGSS-- 346 (516)
Q Consensus 290 ~~ivl~LvaGs~~lmWL~E~IT~-~GIGNGiSLII~~gIis~lp~~l~~~------------------~~~--~~~~~-- 346 (516)
+++++||++|+++++||||+||| ||+|||+||+|++||++++|++.++. +.. ...+.
T Consensus 152 ~~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 231 (474)
T PTZ00219 152 ILIILQLFFAGIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLR 231 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccc
Confidence 78899999999999999999999 99999999999999999999765521 110 00000
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHH
Q 010158 347 --------VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTT 418 (516)
Q Consensus 347 --------~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFA 418 (516)
.+. +. ++.+++++++++++||+|+++||||++|++. +| +++++|+|+||+|+||+|||
T Consensus 232 ~l~~~~~r~~l-~~-~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~---~g---------~~~~~PiKln~agvmPiIfa 297 (474)
T PTZ00219 232 ALKEAFYRPHL-PN-LTNLLATVLVFLVVIYFQGFRVDLPLKSQKV---RG---------QQQSYPIKLFYTSNIPIILQ 297 (474)
T ss_pred hhhhhhhhccc-cc-HHHHHHHHHHHHhheeeeeeEEEEeeecccc---cC---------cCcccceeecccccHHHHHH
Confidence 000 11 2223556677888999999999999999962 22 45777999999999999999
Q ss_pred HHHHHhHHHHHhhcCC----c--------hH-----------HHHHHHcCCCCcCC--CCCchhheeeehhhhh------
Q 010158 419 TYLLAFPSILASILGS----P--------FW-----------QHVKEILNPETSVG--ARPWVYYTIYAFFVFL------ 467 (516)
Q Consensus 419 ssLl~~P~~I~~~l~~----~--------~~-----------~~l~~~l~p~~sl~--~~~~iy~lly~llIi~------ 467 (516)
++++++|+++++++.+ . |. +++.++++|+.++. ..+|+|.++|++++++
T Consensus 298 ssll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs 377 (474)
T PTZ00219 298 TALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFS 377 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999988621 1 21 12667788765442 2357889999888774
Q ss_pred --------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 468 --------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 468 --------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
+||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 378 ~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~l 436 (474)
T PTZ00219 378 KTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTIL 436 (474)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999 49999999999999999999 9999999999999875
No 9
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=1.7e-67 Score=555.34 Aligned_cols=325 Identities=18% Similarity=0.293 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcc-cccccc--ccccccchhhcCchhHHHHHHHHHHHH
Q 010158 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSV-DELGDF--GAELKLSFFQLGISPQIVASILMQVLC 231 (516)
Q Consensus 155 ~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l-~~l~~f--ga~~~~SLFaLGI~PyItASIImQLL~ 231 (516)
.+|+|++||++++++||+|++||+||+|.+.. .+ +...++. ..++.+ |+..++|+|+|||+|||||||+||||+
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~--~~-~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~ 77 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQ--DM-EGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFS 77 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhH--HH-hcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHH
Confidence 37899999999999999999999999998752 11 1111122 223333 567789999999999999999999999
Q ss_pred h-HhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 010158 232 H-IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTI 310 (516)
Q Consensus 232 ~-~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~ivl~LvaGs~~lmWL~E~I 310 (516)
. .+|++++++|| |.|| .|||+|+++|++||++++. ...+.. . ....+.++++++|++|+++++||||+|
T Consensus 78 ~~~~~~l~~~~~~-~~~~-----~tr~ltl~~a~iQs~~~~~-~~~~~~-~--~~~~~~~~~vl~L~~Gt~iv~wL~E~i 147 (395)
T TIGR02920 78 FTKSDGFDAQSPK-EQQY-----RERFLTLIIAIIQGLAIIH-SFTNKN-G--LSDFNMLLATLILVTGTCLLVWLADLN 147 (395)
T ss_pred hCcCcchhhhCHH-HhhH-----HHHHHHHHHHHHHHHHHHH-Hhhccc-c--cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999999987 4444 3999999999999999863 333211 1 111246678999999999999999999
Q ss_pred hhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccc
Q 010158 311 SESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAA 390 (516)
Q Consensus 311 T~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~ 390 (516)
||||+| |+|++|++||++++|+++.+.... + . ...++..++++++++++++++|+++||||++|+++. .++
T Consensus 148 t~~GiG-G~sllI~~~I~s~~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~-~~~- 218 (395)
T TIGR02920 148 AKYGIG-GSMPIVLVSMLKNIPSNVFELFQM---S--Y-IWLIALLILLTLVALFLLAFIERAEYRIPVNDISLH-NRS- 218 (395)
T ss_pred hCCCcc-hHHHHHHHHHHHHHHHHHHHHHhc---c--h-HHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhh-ccC-
Confidence 999999 999999999999999998776531 1 1 111222333445555669999999999999998632 121
Q ss_pred cCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHH----hhcCC-chHHHHHHHcCCCCcCCCCCchhheeeehhh
Q 010158 391 REDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA----SILGS-PFWQHVKEILNPETSVGARPWVYYTIYAFFV 465 (516)
Q Consensus 391 ~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~----~~l~~-~~~~~l~~~l~p~~sl~~~~~iy~lly~llI 465 (516)
++++|+|+|+||+|+||+||||+++++|++++ +++++ .+.+.+...++ ..+|+|.++|++++
T Consensus 219 -------~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~i~y~~li 285 (395)
T TIGR02920 219 -------NLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFS------FSSPVGILIYLILQ 285 (395)
T ss_pred -------CCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhccC------CcchHHHHHHHHHH
Confidence 35799999999999999999999999995554 44322 11211112222 23578999998887
Q ss_pred hh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 466 FL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 466 i~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++ +||||+||||| ++|||+|||++|+|||+|++ |+|++||++++++|++
T Consensus 286 i~fs~fys~i~~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~l 347 (395)
T TIGR02920 286 MLLSYFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGI 347 (395)
T ss_pred HHHHHHHHHheECHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 49999999999 49999999999999999999 9999999999999975
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=4.8e-62 Score=506.31 Aligned_cols=289 Identities=27% Similarity=0.465 Sum_probs=239.8
Q ss_pred chhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----ccc
Q 010158 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAA-----SHS 285 (516)
Q Consensus 211 SLFaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~-----~~~ 285 (516)
|+|+|||+|||||||+||++ +.|+++|++||||+||+|++++||++|+++|++||++++.....++.... +.+
T Consensus 1 SlfsLGI~PyitAsIi~Qll--~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 78 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLL--IIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSG 78 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHH--HSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTC
T ss_pred ChHhhccHHHHHHHHHHHHH--hcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchH
Confidence 79999999999999999999 67999999999999999999999999999999999999744444332111 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhh---cCCcccHHHHHHHHHHHHH
Q 010158 286 VKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLL---GSSVRWWPFMLGLLGVFTI 362 (516)
Q Consensus 286 ~~~~~~ivl~LvaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~---~~~~~~~~~il~~lli~il 362 (516)
....++++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.+.... ....+++. .+..++++++
T Consensus 79 ~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~ 157 (346)
T PF00344_consen 79 FINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALF-LLIILIITLV 157 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999988876544 22234443 3555666777
Q ss_pred HHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCch-----H
Q 010158 363 VTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF-----W 437 (516)
Q Consensus 363 ii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~~-----~ 437 (516)
+++++||+|++|||||+||+++. .. ..++++|+|+|+||+|+||+|||++++++|+++++++++.+ .
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~--~~------~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~ 229 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV--NS------SRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLV 229 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB----------SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCS
T ss_pred HHHhheeeeeeEEEEEEEecccc--cc------CcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHH
Confidence 78889999999999999999741 11 12468999999999999999999999999999999985421 2
Q ss_pred HHHHHHcCCCCcCCCCCchhheeeehhhhh---------cChHHHHHHhh--c-cccccccCCccHHhhhchh-hhhhhh
Q 010158 438 QHVKEILNPETSVGARPWVYYTIYAFFVFL---------FNIFDIVSILY--T-LLFTITLGVNDSYFVEHFV-IIVFPF 504 (516)
Q Consensus 438 ~~l~~~l~p~~sl~~~~~iy~lly~llIi~---------Fnp~diAe~Lk--g-~IpGiR~G~~T~kyL~k~i-rit~~g 504 (516)
+++.++++.+ ...++|..+|.+++++ +||||+||||| | +|||+|||++|+|||+|++ |++++|
T Consensus 230 ~~i~~~~~~~----~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G 305 (346)
T PF00344_consen 230 SGIAYYFSQN----LNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLG 305 (346)
T ss_dssp SCCHHHTSSS----HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccC----cchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhh
Confidence 3355666211 1237888888888775 39999999999 3 9999999999999999999 999999
Q ss_pred HHHHHHHHHh
Q 010158 505 SCFLLFHLAI 514 (516)
Q Consensus 505 a~fl~l~~~~ 514 (516)
|+++++++++
T Consensus 306 ~~~l~~ia~~ 315 (346)
T PF00344_consen 306 ALFLALIAVL 315 (346)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-50 Score=410.98 Aligned_cols=357 Identities=15% Similarity=0.158 Sum_probs=297.9
Q ss_pred ccchhhHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccc
Q 010158 129 MYKNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAE 207 (516)
Q Consensus 129 ~~~~r~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~ 207 (516)
|.++||+|++||+..+ ||++.|.+|.++++|++||.+.+++|.+.++||++|+..+.-.|+ ++|++...|.
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP--------~yw~Rvilas 72 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADP--------FYWMRVILAS 72 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc--------HHHHHHHHhc
Confidence 5689999999999888 999999999999999999999999999999999999987655443 6777777788
Q ss_pred cccchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchH
Q 010158 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVK 287 (516)
Q Consensus 208 ~~~SLFaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~ 287 (516)
+|.++|+|||.|.+|++.|||+|++. ++.+.+.+-.+||..+|..||.+++++++.||..++ ++..|+.. .+.+..
T Consensus 73 nrgTLMelGisPivtSglimQlLag~--kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV-~tG~yG~p-~dLg~~ 148 (476)
T KOG1373|consen 73 NRGTLMELGISPIVTSGLIMQLLAGS--KIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYV-MTGMYGSP-SDLGVG 148 (476)
T ss_pred CCcchhhhccchhhHHHHHHHHHccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCh-hhcchh
Confidence 99999999999999999999999986 777888888999999999999999999999999997 45455432 244566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHhhHHHHHHHHH------------------HHHhhc--C-
Q 010158 288 HVMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKM------------------LSQLLG--S- 345 (516)
Q Consensus 288 ~~~~ivl~LvaGs~~lmWL~E~IT~-~GIGNGiSLII~~gIis~lp~~l~~~------------------~~~~~~--~- 345 (516)
..+++++||+..+.+++.|||+++| ||+|||+||+|.+|||+++.|..++. ++.+.. +
T Consensus 149 ~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k 228 (476)
T KOG1373|consen 149 ICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDK 228 (476)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchH
Confidence 7789999999999999999999999 99999999999999999999987653 111100 0
Q ss_pred ------C--cccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHH
Q 010158 346 ------S--VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLT 417 (516)
Q Consensus 346 ------~--~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIF 417 (516)
+ ..-+|+ +.-++.+++++++++|+|.-++++|+++.+ +|| +.+-+|+|+.|++.||+|+
T Consensus 229 ~~al~eAF~RqnLPN-l~nl~at~lif~iViYlQgfRVeLPirS~r---~RG---------~~~~yPIKL~YTsn~pIil 295 (476)
T KOG1373|consen 229 VRALREAFYRQNLPN-LTNLLATVLIFLIVIYLQGFRVELPIRSTR---ARG---------QYGSYPIKLFYTSNMPIIL 295 (476)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHHHHHHhhccceEEEeeecchh---hcc---------cCCccceEeeecCCcHHHH
Confidence 0 011233 344567777888899999999999999886 444 6788999999999999999
Q ss_pred HHHHHHhHHHHHhhcC-----Cc-------h-----------HHHHHHHcCCCCcCC--CCCchhheeeehhhhh----c
Q 010158 418 TTYLLAFPSILASILG-----SP-------F-----------WQHVKEILNPETSVG--ARPWVYYTIYAFFVFL----F 468 (516)
Q Consensus 418 AssLl~~P~~I~~~l~-----~~-------~-----------~~~l~~~l~p~~sl~--~~~~iy~lly~llIi~----F 468 (516)
.|++.+....++|++. +. | ..++.||++|+.+++ ..+|++.++|.+|++. |
T Consensus 296 qsalvsni~~isqll~~k~~~n~~v~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~F 375 (476)
T KOG1373|consen 296 QSALVSNIFVISQLLYKKFPGNFLVRLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALF 375 (476)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHH
Confidence 9999999999988861 10 1 136788899888775 3679999999999885 3
Q ss_pred ----------ChHHHHHHhh--c-cccccccCCccHHhhhchh-hhhhhhHHHHHHH
Q 010158 469 ----------NIFDIVSILY--T-LLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFH 511 (516)
Q Consensus 469 ----------np~diAe~Lk--g-~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~ 511 (516)
+|+|+|+||| + .++|+|+++ +.|+|+||| .-...|++.++.+
T Consensus 376 sktWievSgsSarDvAkqlKeQ~mvm~G~RE~n-~~~eLnr~IPtAA~~Gg~~igal 431 (476)
T KOG1373|consen 376 SKTWIEVSGSSARDVAKQLKEQQMVMRGHRETN-MAKELNRYIPTAAAFGGLCIGAL 431 (476)
T ss_pred HhHHHHHcCCCHHHHHHHHHhccceecCcchhh-HHHHHHhhccHHHHhhhhHHHHH
Confidence 9999999999 3 799999874 588999998 7777777776654
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=88.89 E-value=0.15 Score=36.48 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=15.6
Q ss_pred HHHHhCccccCCCccCCCcchh
Q 010158 168 VISRIGYFIPLPGFDRRLIPQD 189 (516)
Q Consensus 168 ~IyrlGs~IPLPGId~~~~~~~ 189 (516)
++|.+.++|||+|+......|+
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D~ 22 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSDP 22 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSCC
T ss_pred CEEEEeeCCccccccCCCcCCH
Confidence 5899999999999944444344
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=59.71 E-value=27 Score=31.03 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhH-hhhHHHhhhcChhhHHHHHHHHHHHHHHH
Q 010158 218 SPQIVASILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGF 262 (516)
Q Consensus 218 ~PyItASIImQLL~~~-iP~L~kl~kege~gr~ki~~~tR~Ltlvl 262 (516)
.=.++.||++|++.++ .--+.+.+.+.++.+++.+..--+.+.+.
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v 90 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILV 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 3458899999999885 33444455455555555555544444443
No 14
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=44.96 E-value=3.8e+02 Score=29.27 Aligned_cols=25 Identities=32% Similarity=0.580 Sum_probs=21.7
Q ss_pred CCccchhHHHHHHHhhHHHHHHHHHH
Q 010158 314 GFGQGSSLIICVGILTGYTETLYKML 339 (516)
Q Consensus 314 GIGNGiSLII~~gIis~lp~~l~~~~ 339 (516)
|+| |+|++|++|++-....++.+..
T Consensus 383 ~~g-gtslLI~Vgv~~~~~~qi~a~~ 407 (417)
T CHL00161 383 GLG-TTSLLILVGVAIDTSRQIQTYL 407 (417)
T ss_pred ccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 678 9999999999999998886654
No 15
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=28.47 E-value=2.3e+02 Score=25.42 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc-ccccc---hHHHHHHHHHHHHHHHHHHH
Q 010158 256 WWISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSW 305 (516)
Q Consensus 256 R~LtlvlAiiQA~~~~~~~l~~~~~-~~~~~---~~~~~~ivl~LvaGs~~lmW 305 (516)
...-+++|++|.+....+.+..+.. ...++ ..+.+.++++++.|+.-+||
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566788999999986554433211 11122 23345678888999987777
No 16
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=25.26 E-value=2.8e+02 Score=24.28 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc-ccccc---hHHHHHHHHHHHHHHHHHHH
Q 010158 256 WWISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSW 305 (516)
Q Consensus 256 R~LtlvlAiiQA~~~~~~~l~~~~~-~~~~~---~~~~~~ivl~LvaGs~~lmW 305 (516)
...-+++|++|......+.+.-+.. ...++ ..+...+++++++||+-+|+
T Consensus 36 ~~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 36 LVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999986554433211 11122 23456778889999988877
No 17
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=23.98 E-value=4.2e+02 Score=29.28 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred cCCccchhHHHHHHHhhHHHHHHHHHH
Q 010158 313 SGFGQGSSLIICVGILTGYTETLYKML 339 (516)
Q Consensus 313 ~GIGNGiSLII~~gIis~lp~~l~~~~ 339 (516)
.++| |+|++|++|++-....++.+..
T Consensus 396 ~~~g-GTslLI~VgV~ldt~~qi~s~l 421 (434)
T PRK12907 396 AQIG-GTSLLIIVGVALETMKTLESQL 421 (434)
T ss_pred cccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 4467 9999999999999998886544
No 18
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=21.61 E-value=3.7e+02 Score=23.49 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc-cccc---hHHHHHHHHHHHHHHHHHHH
Q 010158 257 WISLGFAILEAVIVACYSLPYSIYA-ASHS---VKHVMVTAFLLVCGAMTMSW 305 (516)
Q Consensus 257 ~LtlvlAiiQA~~~~~~~l~~~~~~-~~~~---~~~~~~ivl~LvaGs~~lmW 305 (516)
..-+++|++|......+.+.-+... ..++ ..+...+++++++||+-+|+
T Consensus 39 ~~i~~lA~iQi~VqL~~FLHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWIm~ 91 (94)
T TIGR02901 39 TIIIIFAFIQAGLQLIMFMHAGESEDGKVQIYNIYYSAFIALVTVFGSLWVMV 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHheeecCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556789999999864444322111 1122 23446778889999987776
No 19
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=21.22 E-value=5.8e+02 Score=22.55 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.4
Q ss_pred HHHHHhhh-cCCccchhHHHHHHHhhHHHHHHH
Q 010158 305 WICDTISE-SGFGQGSSLIICVGILTGYTETLY 336 (516)
Q Consensus 305 WL~E~IT~-~GIGNGiSLII~~gIis~lp~~l~ 336 (516)
.+.|.+.+ -|+|.|++++.+.+++.-+.-.+.
T Consensus 51 ~~~~~vA~~lGi~~~~n~lf~~~i~~ll~~~~~ 83 (115)
T PF10066_consen 51 NILDWVAKLLGIGRPPNLLFYLGILFLLVIIFS 83 (115)
T ss_pred hHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHH
Confidence 45555566 899999999999999887665543
No 20
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=20.20 E-value=3.6e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc-ccccc---hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010158 256 WWISLGFAILEAVIVACYSLPYSIY-AASHS---VKHVMVTAFLLVCGAMTMSWICDTIS 311 (516)
Q Consensus 256 R~LtlvlAiiQA~~~~~~~l~~~~~-~~~~~---~~~~~~ivl~LvaGs~~lmWL~E~IT 311 (516)
-...+++|++|......+.+.-+.. ...++ ..+.+.++++.++|++-+|+=.+.++
T Consensus 49 ~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~m 108 (111)
T COG3125 49 LIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNM 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4567899999999875444332211 11122 23455677888899998888765544
Done!