Query 010158
Match_columns 516
No_of_seqs 161 out of 1149
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 4.1E-84 1.4E-88 685.6 30.4 354 148-514 6-381 (434)
2 3dl8_G Preprotein translocase 100.0 7.9E-84 2.7E-88 683.3 14.6 355 147-514 5-381 (429)
3 3j01_A Preprotein translocase 100.0 5.6E-83 1.9E-87 677.4 12.4 348 154-514 10-380 (435)
4 3din_C Preprotein translocase 100.0 4E-82 1.4E-86 670.3 12.0 347 147-514 5-376 (431)
5 1rh5_A Preprotein translocase 100.0 1.3E-79 4.4E-84 651.9 23.6 350 135-514 1-391 (436)
6 3mp7_A Preprotein translocase 100.0 4.2E-79 1.4E-83 654.6 10.5 356 134-514 3-423 (482)
7 2ww9_A SEC sixty-one protein h 100.0 4.3E-78 1.5E-82 647.8 13.4 358 131-514 3-440 (490)
8 2wwb_A Protein transport prote 100.0 1.3E-75 4.5E-80 627.0 17.7 354 132-514 3-434 (476)
9 3mp7_A Preprotein translocase 27.0 84 0.0029 33.5 6.2 30 308-339 425-454 (482)
10 2nsc_A Trigger factor, TF; cha 24.7 40 0.0014 28.4 2.6 19 480-498 40-58 (109)
11 2ww9_A SEC sixty-one protein h 23.4 88 0.003 33.5 5.5 41 298-340 429-472 (490)
12 2wwb_A Protein transport prote 21.9 97 0.0033 33.0 5.5 40 298-339 423-465 (476)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=4.1e-84 Score=685.60 Aligned_cols=354 Identities=26% Similarity=0.398 Sum_probs=295.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHH
Q 010158 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVAS 224 (516)
Q Consensus 148 ~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItAS 224 (516)
+..++++|+|+|++||++++++||+|+|||+||+|.+++++. ++...++++++.+ | ||++++|+|+|||+||||||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS 84 (434)
T 2zjs_Y 6 WSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA 84 (434)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred HhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence 346778999999999999999999999999999999876542 2222234553333 4 57899999999999999999
Q ss_pred HHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccc-cccc--cchHHHHHHHHHHHHH
Q 010158 225 ILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-P-YSI-YAAS--HSVKHVMVTAFLLVCG 299 (516)
Q Consensus 225 IImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l-~-~~~-~~~~--~~~~~~~~ivl~LvaG 299 (516)
||||||+.++|.++|++||||+||+|+|+||||+|+++|++||++++.... . ++. ...+ .+..+.++++++|++|
T Consensus 85 II~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aG 164 (434)
T 2zjs_Y 85 IIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAG 164 (434)
T ss_dssp HHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974321 1 121 1123 3455678899999999
Q ss_pred HHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEE
Q 010158 300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKL 379 (516)
Q Consensus 300 s~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPI 379 (516)
++++|||||+|||||+|||+|++|++||++++|+++.+.++....+..++.. +++.+++++++++++||+|++||||||
T Consensus 165 t~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~vi~~vV~~~~~~rrIPv 243 (434)
T 2zjs_Y 165 IALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVA-FLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHH-HHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH-HHHHHHHHHHHHHHHHHheeeEEEEee
Confidence 9999999999999999999999999999999999998888654443334443 244555667778889999999999999
Q ss_pred eeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcC-CchHHHHHHHcCCCCcCCCCCchhh
Q 010158 380 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVYY 458 (516)
Q Consensus 380 qy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~-~~~~~~l~~~l~p~~sl~~~~~iy~ 458 (516)
||+++ +.|+ +.++++++|+|+|+|+|||||+||||+++++|+++++++. ++|.+++.++++|+ +|+|.
T Consensus 244 qyakr--~~gr---~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y~ 312 (434)
T 2zjs_Y 244 QYARK--VVGG---RVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSGL 312 (434)
T ss_dssp EECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHHH
T ss_pred hhhhh--hccC---cccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHHH
Confidence 99974 3443 3566789999999999999999999999999999999774 44666788888876 38999
Q ss_pred eeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 459 TIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 459 lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++|++++++ |||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 313 ~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~l 381 (434)
T 2zjs_Y 313 FIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLL 381 (434)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999998886 49999999999 49999999999999999999 9999999999998865
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=7.9e-84 Score=683.28 Aligned_cols=355 Identities=28% Similarity=0.487 Sum_probs=287.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHH
Q 010158 147 AAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVA 223 (516)
Q Consensus 147 ~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItA 223 (516)
.+..|+++|+|+|++||++++++||+|+|||+||+|.++.++.+ +..+++.+++.+ + |+++++|+|+|||+|||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~-~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItA 83 (429)
T 3dl8_G 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFL-KAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISA 83 (429)
T ss_dssp ---CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC----------------CCSSSSSSCCSSSCCCSSSSSHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHh-hhccccHHHHHHHHhCcccccccHHHHhhHHHHHH
Confidence 45567889999999999999999999999999999998764322 211123333333 4 5689999999999999999
Q ss_pred HHHHHHHHhHhhhHHHhhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cccccccchHHHHHHHHHHH
Q 010158 224 SILMQVLCHIVPSLVQLRK-EGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPY-----SIYAASHSVKHVMVTAFLLV 297 (516)
Q Consensus 224 SIImQLL~~~iP~L~kl~k-ege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~-----~~~~~~~~~~~~~~ivl~Lv 297 (516)
|||||||+.++|+++|++| |||+||+|+|+||||+|+++|++||++++...... .....+.+..+.++++++|+
T Consensus 84 sII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 163 (429)
T 3dl8_G 84 SIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLV 163 (429)
T ss_dssp HHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999987433210 01112334556789999999
Q ss_pred HHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEE
Q 010158 298 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKV 377 (516)
Q Consensus 298 aGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrI 377 (516)
+|++++|||||+|||||+|||+|++|++||++++|+++.+.++....+..++.+. +..+++++++++++||+|++||||
T Consensus 164 aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~-l~~l~~~l~vi~~vV~~~~~~rrI 242 (429)
T 3dl8_G 164 AGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTL-LLIIALIIAIIVGIVYVQEAERRI 242 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHH-HHHHHHHHHHHHHHTCSCCCCCCC
T ss_pred HHHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHH-HHHHHHHHHHHHHHHHheeeEEEE
Confidence 9999999999999999999999999999999999998766542222233344433 455666777788899999999999
Q ss_pred EEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCchHHHHHHHcCCCCcCCCCCchh
Q 010158 378 KLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVY 457 (516)
Q Consensus 378 PIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~~~~~l~~~l~p~~sl~~~~~iy 457 (516)
|+||+|+ +.|+ +.++++++|+|+|+|||||||+||||+++++|++++++++++|..++.++++|+ .|+|
T Consensus 243 Pvqyakr--~~g~---~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~------~~~y 311 (429)
T 3dl8_G 243 PIQYPGR--QVGR---QLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPG------AIFY 311 (429)
T ss_dssp CCBCSSS--CBCC---CCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTT------HHHH
T ss_pred EEEEchh--hccc---cccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCC------chHH
Confidence 9999973 4453 366788999999999999999999999999999999988655655666777764 3899
Q ss_pred heeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 458 YTIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 458 ~lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
.++|++++++ |||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 312 ~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavl 381 (429)
T 3dl8_G 312 NFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALI 381 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999998775 49999999999 49999999999999999999 9999999999999864
No 3
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=5.6e-83 Score=677.45 Aligned_cols=348 Identities=26% Similarity=0.448 Sum_probs=287.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHHHHHH
Q 010158 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILMQVL 230 (516)
Q Consensus 154 ~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItASIImQLL 230 (516)
+|+|+|++||++++++||+|++||+||+|.+++.+.+ +...++++++.+ | |+++++|+|+|||+||||||||||||
T Consensus 10 ~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~-~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL 88 (435)
T 3j01_A 10 GELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLL-EQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLL 88 (435)
T ss_dssp CSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSC-SCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHH-hhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHH
Confidence 6999999999999999999999999999998764322 221223444434 3 56899999999999999999999999
Q ss_pred HhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 010158 231 CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLP-YS--IYAASHSVKHVMVTAFLLVCGAMTMSWIC 307 (516)
Q Consensus 231 ~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~-~~--~~~~~~~~~~~~~ivl~LvaGs~~lmWL~ 307 (516)
+.++|+++|++||||+||+|+|+||||+|+++|++||++++..... ++ ....+.++.+.++++++|++|++++||||
T Consensus 89 ~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~ 168 (435)
T 3j01_A 89 TVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLG 168 (435)
T ss_dssp HHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999743321 10 11112334456789999999999999999
Q ss_pred HHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeecccccc
Q 010158 308 DTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLA 387 (516)
Q Consensus 308 E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~ 387 (516)
|+|||||+|||+|++|++||++++|+++.+.++..+.+..+++. +++.+++++++++++||+|++||||||||+|+ +
T Consensus 169 E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr--~ 245 (435)
T 3j01_A 169 EQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLV-LLLVAVLVFAVTFFVVFVERGQRRIVVNYAKR--Q 245 (435)
T ss_dssp HHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHH-HHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCC--C
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHhheeEEEEEEEehhh--h
Confidence 99999999999999999999999999876554332333334433 24556666777888999999999999999974 4
Q ss_pred ccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCC----chHHHHHHHcCCCCcCCCCCchhheeeeh
Q 010158 388 SAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS----PFWQHVKEILNPETSVGARPWVYYTIYAF 463 (516)
Q Consensus 388 ~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~----~~~~~l~~~l~p~~sl~~~~~iy~lly~l 463 (516)
.|+ +.++++++|+|+|+|+|||||+||||+++++|+++++++++ .|..++.++++|+ +|+|.++|++
T Consensus 246 ~g~---~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~y~~ 316 (435)
T 3j01_A 246 QGR---RVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPG------QPLYVLLYAS 316 (435)
T ss_dssp SSC---CCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSS------GGGGTHHHHH
T ss_pred ccc---cccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCC------CcHHHHHHHH
Confidence 453 36678899999999999999999999999999999997642 2434455556654 4899999999
Q ss_pred hhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 464 FVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 464 lIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
++++ |||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 317 lii~F~~fyt~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavl 380 (435)
T 3j01_A 317 AIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLI 380 (435)
T ss_dssp HHHHHHHHHHHHSSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 49999999999 49999999999999999999 9999999999999864
No 4
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=4e-82 Score=670.27 Aligned_cols=347 Identities=23% Similarity=0.465 Sum_probs=281.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhc---c--Cccccccc-c--ccccccchhhcCch
Q 010158 147 AAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFV---S--GSVDELGD-F--GAELKLSFFQLGIS 218 (516)
Q Consensus 147 ~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~---s--g~l~~l~~-f--ga~~~~SLFaLGI~ 218 (516)
.+..|+++|+|+|++||++++++||+|+|||+||+|.+++.+.+ +.. + ++.+++.+ + |+++++|+|+|||+
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~ 83 (431)
T 3din_C 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIF-RRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVT 83 (431)
T ss_dssp ---CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC---------------------CTTHHHHCSSSSCCCSSSSSHH
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHH-hhhccccccccHHHHHHHHcCcccccccHHHHhhH
Confidence 45677889999999999999999999999999999998764321 210 1 22333333 3 56799999999999
Q ss_pred hHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccc-hHHHHHHHH
Q 010158 219 PQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHS-VKHVMVTAF 294 (516)
Q Consensus 219 PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~---~~~~~~~-~~~~~~ivl 294 (516)
||||||||||||+.++|+++|++||||+||+|+|+||||+|+++|++||++++... .++ ....+.+ ..+.+++++
T Consensus 84 PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl 162 (431)
T 3din_C 84 PYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSL-ARSNPDMVAPGVNVLQFTVLSTM 162 (431)
T ss_dssp HHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSSCCCCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCccccccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987432 221 1101233 557889999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccE
Q 010158 295 LLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 374 (516)
Q Consensus 295 ~LvaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~ 374 (516)
+|++|++++|||||+|||||+|||+|++|++||++++|+++.+.+. +..++.+. +..+++++++++++||+|++|
T Consensus 163 ~L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~----~~~~~~~~-l~~l~~~l~vi~~vV~~~~~~ 237 (431)
T 3din_C 163 SMLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL----GGLNLLEW-IFLIAVALITIFGIILVQQAE 237 (431)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS----CCSCTHHH-HHHHHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc----ccccHHHH-HHHHHHHHHHHHHHHhheeeE
Confidence 9999999999999999999999999999999999999998765431 22344443 455666777788899999999
Q ss_pred EEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCchHHHHHHHcCCCCcCCCCC
Q 010158 375 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 454 (516)
Q Consensus 375 rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~~~~~l~~~l~p~~sl~~~~ 454 (516)
|||||||+|+ +.|+ +.++++++|+|+|+|||||||+||||+++++|+++++++++.| ..++++|. .
T Consensus 238 rrIPvqyakr--~~g~---~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~~------~ 303 (431)
T 3din_C 238 RRITIQYARR--VTGR---RVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRAG------G 303 (431)
T ss_dssp CCCCCCBTTT--BCCC---CCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSSTT------H
T ss_pred EEEEEEechh--hccc---cccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCCC------c
Confidence 9999999974 4453 3667889999999999999999999999999999999874322 22345543 3
Q ss_pred chhheeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 455 WVYYTIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 455 ~iy~lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
|+|.++|++++++ |||+|+||||| ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavl 376 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALL 376 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8999999998775 49999999999 49999999999999999999 9999999999999864
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=1.3e-79 Score=651.90 Aligned_cols=350 Identities=14% Similarity=0.122 Sum_probs=280.5
Q ss_pred HHHhhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchh
Q 010158 135 LNFIRLSS-VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 213 (516)
Q Consensus 135 l~~~~~~~-~~~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SLF 213 (516)
+|.+|+.. .+||+++|++++|+|+|++||++++++||+|+|||+||+|.++.+ . +.+++.++|++++|+|
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~~-~--------~~~~~~~~a~~~~sif 71 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA-I--------FEFWQTITASRIGTLI 71 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS-C--------CTTHHHHHTCCTTBTT
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH-H--------HHHHHHhhccccchHH
Confidence 35677775 459999999999999999999999999999999999999997652 1 1223335688999999
Q ss_pred hcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH
Q 010158 214 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTA 293 (516)
Q Consensus 214 aLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~iv 293 (516)
+|||+||||||||||||++. .+.+++||||+||+|+|++|||+|+++|++||++++..+ .+ . +.+..+.++++
T Consensus 72 aLGI~PyItAsII~QLL~g~--~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~---~-~~~~~~~~~~v 144 (436)
T 1rh5_A 72 TLGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF---G-ILTPLLAFLVI 144 (436)
T ss_dssp TTTTHHHHHHHHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---C-CCCHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhhC--ceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc---c-CCchHHHHHHH
Confidence 99999999999999999653 344899999999999999999999999999999997431 12 1 23445677899
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHH-------HHHHhhcCCcccHHHHHHHHHHHHHHHHH
Q 010158 294 FLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYK-------MLSQLLGSSVRWWPFMLGLLGVFTIVTMW 366 (516)
Q Consensus 294 l~LvaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~-------~~~~~~~~~~~~~~~il~~lli~ilii~~ 366 (516)
++|++|++++|||||+|||||+|||+|++|++||++++|+++.+ .++....+..++.. +..++++++++++
T Consensus 145 l~L~~Gt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~--l~~l~~~l~v~~~ 222 (436)
T 1rh5_A 145 IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY--IAPIIGTIIVFLM 222 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887 66544433223322 3345566677888
Q ss_pred hhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcC---CchH------
Q 010158 367 AVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG---SPFW------ 437 (516)
Q Consensus 367 iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~---~~~~------ 437 (516)
+||+|++|||||+||++ ++ ++++|+|+|+|+|||||+||||+++++|++++++++ ..|.
T Consensus 223 vV~~~~~~rrIPvqyak---~~---------g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~ 290 (436)
T 1rh5_A 223 VVYAECMRVEIPLAHGR---IK---------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 290 (436)
T ss_dssp HHHHTTCEEEEECCCSS---ST---------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSS
T ss_pred HHhhcceEEEEEEEecc---cC---------CccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhcccc
Confidence 99999999999999996 22 478999999999999999999999999999999863 1232
Q ss_pred ---HHHHHHcCCCCcCC-----CCC-chhheeeehhhhh----------cChHHHHHHhh---ccccccccCCc-cHHhh
Q 010158 438 ---QHVKEILNPETSVG-----ARP-WVYYTIYAFFVFL----------FNIFDIVSILY---TLLFTITLGVN-DSYFV 494 (516)
Q Consensus 438 ---~~l~~~l~p~~sl~-----~~~-~iy~lly~llIi~----------Fnp~diAe~Lk---g~IpGiR~G~~-T~kyL 494 (516)
+++.+|++|+.+.. ... ++|.++|++++++ |||+|+||||| ++|||+|||++ |+|||
T Consensus 291 ~~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL 370 (436)
T 1rh5_A 291 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRL 370 (436)
T ss_dssp SBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHH
T ss_pred cccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHH
Confidence 34667888754321 111 6888888888775 49999999999 49999999999 69999
Q ss_pred hchh-hhhhhhHHHHHHHHHh
Q 010158 495 EHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 495 ~k~i-rit~~ga~fl~l~~~~ 514 (516)
+|++ |+|++||+|++++|.+
T Consensus 371 ~~vi~rit~~Ga~~l~~ia~l 391 (436)
T 1rh5_A 371 KRYIPPLTVMSSAFVGFLATI 391 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999998865
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=4.2e-79 Score=654.56 Aligned_cols=356 Identities=17% Similarity=0.182 Sum_probs=225.2
Q ss_pred hHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccch
Q 010158 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (516)
Q Consensus 134 ~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SL 212 (516)
|+|.+|++... ||+++|++++|+|+|++||++++++||+|++||+||+|.+.. |. +.+++.+.|.+++|+
T Consensus 3 ~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~~-~~--------~~~l~~~~Gg~~~Si 73 (482)
T 3mp7_A 3 ARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-DY--------FQFLRVVLAGRNGSI 73 (482)
T ss_dssp -----------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSCC-CS--------CSSTTTTTCSCTTBT
T ss_pred HHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCcccc-cH--------HHHHHHhcCCCcccH
Confidence 67889988655 999999999999999999999999999999999999998743 11 222334444479999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH
Q 010158 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292 (516)
Q Consensus 213 FaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~i 292 (516)
|+|||+||||||||||||+.. ++++++||||+||+|+|+||||+|+++|++||++++. ...++......+..+.+++
T Consensus 74 faLGI~PyITASII~QLL~~~--~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~-~~~~~~~~~~~~~~~~~~i 150 (482)
T 3mp7_A 74 LTLGIGPIVTAGIILQLLVGS--EIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWIL-GGAFGRVGVDVTYAIAVLM 150 (482)
T ss_dssp TSSTTHHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHH-SSSSSCC------CTHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhc--cHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccccccchHHHHHH
Confidence 999999999999999999975 8999999999999999999999999999999999973 4333221001223457789
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhc--------CCcccHHH------------
Q 010158 293 AFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLG--------SSVRWWPF------------ 352 (516)
Q Consensus 293 vl~LvaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~--------~~~~~~~~------------ 352 (516)
+++|++|++++|||||+|||||+|||+||+|++||++++|+++.+.+..... ...+..+.
T Consensus 151 vl~L~aGt~~lmwL~E~It~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~ 230 (482)
T 3mp7_A 151 ILQLAMGGIVLIILDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWG 230 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhH
Confidence 9999999999999999999999999999999999999999997654311000 00111110
Q ss_pred ---------HHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHH
Q 010158 353 ---------MLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLA 423 (516)
Q Consensus 353 ---------il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~ 423 (516)
.++.+++++++++++||+|++||||||||+|. + +++|+|+|+|||||||+||||++++
T Consensus 231 ~~~~~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~---~----------~~~~iPiKln~aGviPiIfassll~ 297 (482)
T 3mp7_A 231 AIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGV---T----------VRGSYPIRFLYVSNIPIILTFALYA 297 (482)
T ss_dssp SCCCSSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------------------CEECSSSSTTHHHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEeccc---c----------ccceeeEeecccCchHHHHHHHHHH
Confidence 13345566677788999999999999999862 1 4699999999999999999999999
Q ss_pred hHHHHHhhcCC---chH-----------HHHHHHcCCCCcCCC--CC----chhheeeehhhhh----------cChHHH
Q 010158 424 FPSILASILGS---PFW-----------QHVKEILNPETSVGA--RP----WVYYTIYAFFVFL----------FNIFDI 473 (516)
Q Consensus 424 ~P~~I~~~l~~---~~~-----------~~l~~~l~p~~sl~~--~~----~iy~lly~llIi~----------Fnp~di 473 (516)
+|+++++++.+ +|. +++.++++|+.++.. .+ ++|.++|++++++ +||+|+
T Consensus 298 ~p~~i~~~~~~~~~~~l~~~~~~~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~di 377 (482)
T 3mp7_A 298 NIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSI 377 (482)
T ss_dssp HHHHHHHHHHTTSCCSSBCCCCTTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGC
T ss_pred HHHHHHHHhhhccchhhhhhcccccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999987632 121 245677887654421 12 3688888887665 499999
Q ss_pred HHHhh---ccccccccCCc-cHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 474 VSILY---TLLFTITLGVN-DSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 474 Ae~Lk---g~IpGiR~G~~-T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
||||| ++|||+|||++ |+|||+|++ |+|++||+|++++|.+
T Consensus 378 A~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavl 423 (482)
T 3mp7_A 378 ARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVL 423 (482)
T ss_dssp CC--------CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999 49999999997 799999999 9999999999999864
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=4.3e-78 Score=647.81 Aligned_cols=358 Identities=15% Similarity=0.167 Sum_probs=288.1
Q ss_pred chhhHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccc
Q 010158 131 KNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 209 (516)
Q Consensus 131 ~~r~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~ 209 (516)
+.||+|.+|++... ||+++|.+++|+|+|++||++++++||+ +|||+||+|.+++. +. .+.+.+++.+.|+++
T Consensus 3 ~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~----~~-~~~~~~~~~~~a~~~ 76 (490)
T 2ww9_A 3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTP----NV-NDPIYFLRGVFGCEP 76 (490)
T ss_dssp CSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTT----CS-SCCCTTTHHHHTCCS
T ss_pred cchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHh----cc-cCHHHHHHHHHcccc
Confidence 46788999998655 9999999999999999999999999999 99999999987541 11 112333444668899
Q ss_pred cchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Q 010158 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHV 289 (516)
Q Consensus 210 ~SLFaLGI~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~ 289 (516)
+|+|+|||+||||||||||||++. .+.+++||||+||+|+|+||||+|+++|++||++++. +..++ .+.+..+.
T Consensus 77 ~sifaLGI~PyItASII~QLL~g~--~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~-~~~~~---~~~~~~~~ 150 (490)
T 2ww9_A 77 RTLLEFGLFPNISSGLILQLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIF-AGYFG---DDLSVVQI 150 (490)
T ss_dssp SSTTSSTTHHHHHHHHHHHHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSS---CCCSTTHH
T ss_pred cHHHHHhhHHHHHHHHHHHHHhhC--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---CCccHHHH
Confidence 999999999999999999999653 2333899999999999999999999999999999974 33332 23344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHhhHHHHHHH--------------------HHHHHh--hc--
Q 010158 290 MVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLY--------------------KMLSQL--LG-- 344 (516)
Q Consensus 290 ~~ivl~LvaGs~~lmWL~E~IT~-~GIGNGiSLII~~gIis~lp~~l~--------------------~~~~~~--~~-- 344 (516)
++++++|++|++++|||||+||| ||+|||+||+|++||++++|++++ +.++.. ..
T Consensus 151 ~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~ 230 (490)
T 2ww9_A 151 GLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKT 230 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccc
Confidence 78999999999999999999999 999999999999999999999876 444433 11
Q ss_pred --CCc-ccH-----HHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHH
Q 010158 345 --SSV-RWW-----PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVL 416 (516)
Q Consensus 345 --~~~-~~~-----~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPII 416 (516)
+.. +.. +. +..+++++++++++||+|+++|||||||+|+ + ++++|+|+|+|||||||+|
T Consensus 231 ~~~~l~~~~~r~~lp~-l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~---~---------g~~s~lPlKln~aGviPiI 297 (490)
T 2ww9_A 231 FIGGIISAFNRDYLPN-LTTTIIVLAIAIIVCYLQSVRVELPIRSTRA---R---------GTNNVYPIKLLYTGCLSVL 297 (490)
T ss_dssp CCCSCCCCCSSSSCCS-HHHHHHHHHHHHHHHHHTTCCEECCCBCSSS---S---------SBCCCCEECHHHHTHHHHH
T ss_pred cccchhhHHhhccccH-HHHHHHHHHHHHHHheeeeeEEEEEEEEccc---C---------CcCceeeeEeccccchHHH
Confidence 111 111 12 3345566667788999999999999999972 2 4789999999999999999
Q ss_pred HHHHHHHhHHHHHh----hcC----C--------chH---------HHHHHHcCCCCcCCC--CC-ch----hheeeehh
Q 010158 417 TTTYLLAFPSILAS----ILG----S--------PFW---------QHVKEILNPETSVGA--RP-WV----YYTIYAFF 464 (516)
Q Consensus 417 FAssLl~~P~~I~~----~l~----~--------~~~---------~~l~~~l~p~~sl~~--~~-~i----y~lly~ll 464 (516)
|||+++++|+++++ +++ + .|. +++.++++|+.++.. .+ |+ |.++|+++
T Consensus 298 Fassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~l 377 (490)
T 2ww9_A 298 FSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVT 377 (490)
T ss_dssp HHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHH
Confidence 99999999998888 541 1 122 345566777554321 23 55 77777777
Q ss_pred hhh----------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 465 VFL----------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 465 Ii~----------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
+++ |||+|+||||| ++|||+||| +|+|||+|++ |+|++||+|++++|.+
T Consensus 378 ii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavl 440 (490)
T 2ww9_A 378 GIWFADKWQAISGSSARDVALEFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVI 440 (490)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 59999999999 499999999 9999999999 9999999999998864
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.3e-75 Score=627.04 Aligned_cols=354 Identities=14% Similarity=0.138 Sum_probs=287.6
Q ss_pred hhhHHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcccccccccccccc
Q 010158 132 NRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 210 (516)
Q Consensus 132 ~r~l~~~~~~~~~-~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~ 210 (516)
.||+|.+|+.... ||+++|.+++|+|+|++||++++++||+|+|||+||+|.++..| .++++++..|++++
T Consensus 3 ~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~--------~~~~~~~~fa~~~~ 74 (476)
T 2wwb_A 3 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD--------PFYWMRVILASNRG 74 (476)
T ss_dssp SCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSC--------CCHHHHHHHCSSCS
T ss_pred chHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccc--------cHHHHHHHHccccc
Confidence 5788999988555 99999999999999999999999999999999999999875322 35555564488899
Q ss_pred chhhcCchhHHHHHHHHHHHH--hHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Q 010158 211 SFFQLGISPQIVASILMQVLC--HIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKH 288 (516)
Q Consensus 211 SLFaLGI~PyItASIImQLL~--~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~ 288 (516)
|+|+|||+||||||||||||+ .++|.+++++ ||+|+|++|||+|+++|++||++++..+. ++.. .+.+..+
T Consensus 75 SifaLGI~PyItASII~QLL~g~~iip~~~~l~-----gR~k~~~~tR~lti~la~iQa~~~v~~g~-~~~~-~~~~~~~ 147 (476)
T 2wwb_A 75 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-----DRALFNGAQKLFGMIITIGQSIVYVMTGM-YGDP-SEMGAGI 147 (476)
T ss_dssp SSCSSSSTHHHHHHHHHHHHHHHCCCSCCSSSS-----CSSCHHHHHHHHHHHHHHHHHHHHHHHTS-SCCS-SCSCHHH
T ss_pred cHHHHhhHHHHHHHHHHHHHHhCCccccchhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCccHHH
Confidence 999999999999999999994 4689888875 99999999999999999999999874243 3321 1334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHhhHHHHHHHH------------------HHHHh--hcCC-
Q 010158 289 VMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYK------------------MLSQL--LGSS- 346 (516)
Q Consensus 289 ~~~ivl~LvaGs~~lmWL~E~IT~-~GIGNGiSLII~~gIis~lp~~l~~------------------~~~~~--~~~~- 346 (516)
.++++++|++|++++|||||+||| ||+|||+||+|++||++++.++.++ .++.. ..+.
T Consensus 148 ~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~ 227 (476)
T 2wwb_A 148 CLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKV 227 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccc
Confidence 778999999999999999999999 9999999999999999999444332 22211 1100
Q ss_pred --------cccHHHHHHHHHHHHHHHHHhhheeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHH
Q 010158 347 --------VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTT 418 (516)
Q Consensus 347 --------~~~~~~il~~lli~ilii~~iV~v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFA 418 (516)
.+-.+. +..+++++++++++||+|++||||||||+| ++ ++++|+|+|+|||||||+|||
T Consensus 228 ~~l~~~~~r~~l~~-~~~ll~~~~v~~~vV~~q~~~rrIPv~yak---~~---------g~~~~~PiKln~aGviPiIfa 294 (476)
T 2wwb_A 228 RALREAFYRQNLPN-LMNLIATIFVFAVVIYFQGFRVDLPIKSAR---YR---------GQYNTYPIKLFYTSNIPIILQ 294 (476)
T ss_dssp SSSSSCSSSSSHHH-HHHHHHHHHHHHHHHHHHHCCBCCCCCBCS---SS---------SBCSCCCBCTTTSSHHHHHHH
T ss_pred cchhhhhhccccch-HHHHHHHHHHHhheeEEEEEEEEEEEEecc---cC---------CccceeeeeeccccchHHHHH
Confidence 011222 223444566778899999999999999996 23 467999999999999999999
Q ss_pred HHHHHhHHHHHhhc----C-Cc-------hHH-------------HHHHHcCCCCcCCC--CCchhheeeehhhhh----
Q 010158 419 TYLLAFPSILASIL----G-SP-------FWQ-------------HVKEILNPETSVGA--RPWVYYTIYAFFVFL---- 467 (516)
Q Consensus 419 ssLl~~P~~I~~~l----~-~~-------~~~-------------~l~~~l~p~~sl~~--~~~iy~lly~llIi~---- 467 (516)
++++++|+++++++ + +. |.. ++.++++|+.++.. .+|+|.++|++++++
T Consensus 295 ssll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~f 374 (476)
T 2wwb_A 295 SALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF 374 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHH
Confidence 99999999999886 2 21 321 27788888665432 358899999988774
Q ss_pred ----------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158 468 ----------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI 514 (516)
Q Consensus 468 ----------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~ 514 (516)
+||+|+||||| ++|||+|| ++|+|||+|++ |+|++||+|++++|.+
T Consensus 375 yt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavl 434 (476)
T 2wwb_A 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVL 434 (476)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999 49999999 89999999999 9999999999998865
No 9
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=27.03 E-value=84 Score=33.53 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=23.5
Q ss_pred HHhhhcCCccchhHHHHHHHhhHHHHHHHHHH
Q 010158 308 DTISESGFGQGSSLIICVGILTGYTETLYKML 339 (516)
Q Consensus 308 E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~ 339 (516)
|.+...| .|+|++|++|++-....++.+..
T Consensus 425 ~~l~~~g--gGTslLI~VgV~~~~~~qi~s~~ 454 (482)
T 3mp7_A 425 DFLGALG--TGTGILLTVGILYRFYEEIAREQ 454 (482)
T ss_dssp HHHTCSS--CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC--CceeeeeeHHHHHHHHHHHHHHH
Confidence 5555444 59999999999999998876543
No 10
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=24.73 E-value=40 Score=28.38 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=15.3
Q ss_pred cccccccCCccHHhhhchh
Q 010158 480 LLFTITLGVNDSYFVEHFV 498 (516)
Q Consensus 480 ~IpGiR~G~~T~kyL~k~i 498 (516)
.|||+|+|+...+.+++..
T Consensus 40 ~ipGFRkGKvP~~vi~k~y 58 (109)
T 2nsc_A 40 EIPGFRKGRIPKNVLKMKL 58 (109)
T ss_dssp CCTTSCTTCCCHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHH
Confidence 8999999988777666654
No 11
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=23.40 E-value=88 Score=33.46 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHH---HHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHH
Q 010158 298 CGAMTMS---WICDTISESGFGQGSSLIICVGILTGYTETLYKMLS 340 (516)
Q Consensus 298 aGs~~lm---WL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~ 340 (516)
.|++++. -+.|.+.. +|.|+|++|+++++-....++.+...
T Consensus 429 ~Ga~~L~~lavlp~~l~~--~ggGTslLI~VgV~~~~~~qi~~e~~ 472 (490)
T 2ww9_A 429 TGASVLSLITVIGESLGL--KGKAAGIVVGIAGGFSLLEVITIEYQ 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHSC--CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 34455443 34699999999999999999887764
No 12
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.93 E-value=97 Score=32.98 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=28.2
Q ss_pred HHHHHHH---HHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHH
Q 010158 298 CGAMTMS---WICDTISESGFGQGSSLIICVGILTGYTETLYKML 339 (516)
Q Consensus 298 aGs~~lm---WL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~ 339 (516)
.|++++. -+.|.+. ++|.|+|++|.++++-++..++.++-
T Consensus 423 ~Ga~~l~~lavlp~~l~--~~~gGTslLI~Vgv~~~~~e~i~~e~ 465 (476)
T 2wwb_A 423 FGGLCIGALSVLADFLG--AIGSGTGILLAVTIIYQYFEIFVKEQ 465 (476)
T ss_dssp HHHHHHHHHHHHHHHHC--CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 3344443 56779999999999999988876543
Done!