RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010158
(516 letters)
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 176 bits (449), Expect = 7e-51
Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 14/266 (5%)
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S F LGI P I ASI+MQ+L + P L +L KEG +G +KI+ Y +++L A+++A+ +
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60
Query: 271 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
Y ++ + ++++ L G M + W+ + I++ G G G SLII G
Sbjct: 61 VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120
Query: 327 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFK 385
I+ + + S L + L LL + T+ + VV + E R++ +QY
Sbjct: 121 IVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRV 180
Query: 386 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 445
+ + S Y+P +N +G+ P++ + LLA P +A LGS F L
Sbjct: 181 VGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLA 233
Query: 446 PETSVGARPWVYYTIYAFFVFLFNIF 471
+G+ VY Y + F+ F
Sbjct: 234 YYLPIGS--PVYILFYIVLIIFFSYF 257
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 178 bits (455), Expect = 1e-50
Identities = 95/341 (27%), Positives = 158/341 (46%), Gaps = 30/341 (8%)
Query: 144 LNNAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELG 202
+ ++ FK E+R+R+ T +++ RIG +IP+PG D + SG + L
Sbjct: 1 MLKTLKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAAL-AQLFDQQSGGILGLF 59
Query: 203 DF---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWIS 259
+ GA + S F LGI P I ASI+MQ+L ++P L +L+KEG G KI Y +++
Sbjct: 60 NLFSGGALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLT 119
Query: 260 LGFAILEAVIVACY----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
+ A ++++ +A S + + L G M + W+ + I+E G
Sbjct: 120 VVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGI 179
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 375
G G SLII GI+ G + + S+ F L L+ +F V + V V + R
Sbjct: 180 GNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVF-LLLIVLFLAVIAFVVFVEQAQR 238
Query: 376 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 431
++ +QY G K+ Y+P +N +G+ PV+ + +L FP+ +A
Sbjct: 239 RIPVQYAKRQVGRKMYGGQS---------SYLPLKVNMAGVIPVIFASSILLFPATIAQF 289
Query: 432 LGSPFW-QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
GS W Q + L+P + +Y +YA + F F
Sbjct: 290 FGSGSWLQWIANYLSPGS------PLYILLYALLIIFFTFF 324
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 157 bits (400), Expect = 6e-43
Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 16/328 (4%)
Query: 150 SFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAEL 208
FK E+R+R+ T +++ RIG FIP+PG + + + S + + GA
Sbjct: 12 PKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALS 71
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 268
+ S F LGI P I ASI+MQ+L P L +L KEG +G KI+ Y +++L A+++A+
Sbjct: 72 RGSIFALGIMPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQAL 131
Query: 269 IVACYSLPYSIYAAS---HSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICV 325
V + + ++ L G M + W+ + I++ G G G SLII
Sbjct: 132 GVV-LGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFA 190
Query: 326 GILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGF 384
GI+ ++ ++ L ++ L LL + T+ ++ VV V + R++ +QY
Sbjct: 191 GIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKR 250
Query: 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEIL 444
+ Y+P +N +G+ PV+ + LL FPS +A LG+ + L
Sbjct: 251 QSYRGQS---------SYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPL 301
Query: 445 N-PETSVGARPWVYYTIYAFFVFLFNIF 471
++ VY +Y + F+ F
Sbjct: 302 TSISDALSPGSPVYIALYVVLIIFFSYF 329
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 151 bits (384), Expect = 6e-41
Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 32/327 (9%)
Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF-----GAE 207
K E+ RL T L+++ R+G FIP+PG D L + L G
Sbjct: 7 KDELLNRLLFTLGLLLLIRLGTFIPVPGID-----HTQLYPSLSNNPLLNLLNTFSGGGF 61
Query: 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILE 266
+ F LGI P I ASI++Q+L I+PSL +L+KE G G KI Y +++LG+AI++
Sbjct: 62 FVIGLFALGILPYINASIIIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQ 121
Query: 267 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
++ + + L Y + ++ + L G+M + W+ + I+E G G GSSL+I
Sbjct: 122 SIGI-SFWLKP--YLFNWNLLLALEIVLALTSGSMIVLWLSELITEKGLGNGSSLLIFFN 178
Query: 327 ILTGYTETLYKMLSQLLGSSVRW-WPFMLGLLGVFTIVTMWA-VVVTEGCRKVKLQYYGF 384
I++ L K+L LL S + LL +T+ + + E RK+ L
Sbjct: 179 IVSN----LPKLLQSLLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPL----- 229
Query: 385 KLASA---AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK 441
SA + Y+P +N +G+ P++ + LL P L +IL + F +
Sbjct: 230 --ISAKQLGKSSRL--ASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLL 285
Query: 442 EILNPETSVGARPWVYYTIYAFFVFLF 468
+ S V Y + F F
Sbjct: 286 SLFLQLASFKILYLVLYFVLILFFSYF 312
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 140 bits (354), Expect = 1e-36
Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 33/329 (10%)
Query: 157 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--------GAEL 208
R +L T L+V+ RIG FIP+PG D S + + F GA
Sbjct: 1 REKLLFTLGLLVLFRIGTFIPIPGID--------ASAFQNLIQQNPIFGLLNTFSGGALG 52
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLR-KEGLDGHEKIKSYIWWISLGFAILEA 267
++S F LGISP I ASI++Q+L VP L+QL+ KEG G KI +++L A +++
Sbjct: 53 QISIFALGISPYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQS 112
Query: 268 VIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
+ + + Y ++ L G+M + W+ + I++ G G G SL+I GI
Sbjct: 113 LGIVMTGM--YGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGI 170
Query: 328 LTGYTETL---YKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV--TEGCRKVKLQYY 382
L ++ + + + + LL + + ++AVVV + RK+ +Q
Sbjct: 171 AATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSA 230
Query: 383 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 442
+ + Y+P +N +G+ PV+ + LL+ P+ ++ L S
Sbjct: 231 KRQGGRRGSQS-------TYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQG--GAW 281
Query: 443 ILNPETSVGARPWVYYTIYAFFVFLFNIF 471
LNP S+ + +Y + F+ F
Sbjct: 282 FLNPILSLSLSDPIGAILYLILIIFFSFF 310
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 89.3 bits (221), Expect = 4e-19
Identities = 68/290 (23%), Positives = 139/290 (47%), Gaps = 20/290 (6%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 213
+EIRR++ T ++++ RIG FIP+P + ++ + V G ++ G GA S F
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGG-GALQHFSIF 70
Query: 214 QLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
+GI+P I ASI++Q+L ++P + K+G G +K + + ++ A ++A+ +
Sbjct: 71 AVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGM-- 128
Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMT-----MSWICDTISESGFGQGSSLIICVGI 327
S ++ A + T +L + +T + W+ + I+ +G G G S++I G+
Sbjct: 129 -SYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAGL 187
Query: 328 LTG---YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYG 383
+ +Y Q G + + L+G+ + + V+ + + RK+ +QY
Sbjct: 188 VAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQY-- 245
Query: 384 FKLASAAREDSPITEVE-PYIPFNINPSGMQPVLTTTYLLAFPSILASIL 432
A A ++ + ++P +N +G+ PV+ + L P +A +
Sbjct: 246 ---AKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLF 292
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 73.1 bits (180), Expect = 7e-14
Identities = 64/326 (19%), Positives = 134/326 (41%), Gaps = 37/326 (11%)
Query: 150 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGF---DRRLIPQDYLSFVSGSVDELGDFGA 206
F I +++ T ++ I +G I +P D + +L + + GD
Sbjct: 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTG--GDLRT 63
Query: 207 ELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILE 266
L+ F LG+ P + + I++Q+ + L K+ ++ + ++L A+++
Sbjct: 64 ---LNIFSLGLGPWMTSMIILQLFSYR--KRDGLMKQTIEEQHYRERI---LTLIIAVIQ 115
Query: 267 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
++ V SLP S + +++ +LV G M + W+ D + G G G I+ V
Sbjct: 116 SLAVI-LSLPSK-ERISQTN--ILLNTLILVTGTMFLVWLSDLNARYGIG-GPMPIVLVS 170
Query: 327 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386
++ + + + + + +L LL + T+ ++ + + E ++ Y
Sbjct: 171 MIKSIPQDVIEYIDASHIVII-----LLILLVIITLFFLYFIELVE----YRIPYNDIMN 221
Query: 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK-EILN 445
+ + S Y+ +NP+G P++ + LL FP + ++ S F +
Sbjct: 222 HNRFKMYS-------YLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADM 274
Query: 446 PETSVGARPWVYYTIYAFFVFLFNIF 471
S G+ V T+Y FL + F
Sbjct: 275 DMLSFGSPLGV--TVYLILQFLLSYF 298
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 65.9 bits (161), Expect = 1e-11
Identities = 66/322 (20%), Positives = 127/322 (39%), Gaps = 38/322 (11%)
Query: 156 IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL----SFVSGSVDELGDFGAELKLS 211
I +++ T +++I +G +IP+P + + QD SF ++ G G LS
Sbjct: 2 IYKKILFTCFILIIYVLGSYIPIPFVE--VSKQDMEGVKNSFFKIAIANTG--GNLTTLS 57
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGH-EKIKSYIWWISLGFAILEAVIV 270
F LG+ P + + I++Q+ + +G D K + Y ++ A+I
Sbjct: 58 IFSLGLGPWMTSMIILQLFSFT-------KSDGFDAQSPKEQQYRERF---LTLIIAIIQ 107
Query: 271 ACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 330
+ S ++++ +LV G + W+ D ++ G G GS I+ V +L
Sbjct: 108 GLAIIHSFTNKNGLSDFNMLLATLILVTGTCLLVWLADLNAKYGIG-GSMPIVLVSMLKN 166
Query: 331 YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAA 390
++ +L S W ++ LL + T+V ++ + E ++ L + +
Sbjct: 167 IPSNVF----ELFQMSYIW---LIALLILLTLVALFLLAFIERAE-YRIPVNDISLHNRS 218
Query: 391 REDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK-EILNPETS 449
S Y+P +NP+G + LL P + +LG F + S
Sbjct: 219 NLMS-------YLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFS 271
Query: 450 VGARPWVYYTIYAFFVFLFNIF 471
+ + IY L + F
Sbjct: 272 FSSPVGIL--IYLILQMLLSYF 291
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 34.4 bits (80), Expect = 0.13
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 157 RRRLFVTAVLIVISRIGYF----IPLPGFDRRLIPQ-DYLSFVSGSVDELGDFGAELKLS 211
+ +L TA+++++ YF IPL G + + L + G FG +
Sbjct: 27 KEKLKWTAIVLIL----YFILTNIPLYGISQSSQDLFELLRIIFA-----GSFG-----T 72
Query: 212 FFQLGISPQIVASILMQVLCHIVPS-LVQLRKEGLDGHEKIKSYIWWISLGFAILEAV-- 268
QLGI P + A I++Q+L V S L+ L + + +++ LEA
Sbjct: 73 LLQLGIGPIVTAGIILQLL---VGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPF 129
Query: 269 IVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
++A P + A++ + ++ L G + + + + +S+ G G G SL I G+
Sbjct: 130 VLAGAFGPATGLASTPLLALLIFLQLFL--GGILIILLDELVSKWGIGSGISLFILAGV 186
>gnl|CDD|218339 pfam04941, LEF-8, Late expression factor 8 (LEF-8). Late
expression factor 8 (LEF-8) is one of the primary
components of RNA polymerase produced by polyhedrosis
viruses. LEF-8 shows homology to the second largest
subunit of prokaryotic DNA-directed RNA polymerase.
Length = 748
Score = 30.1 bits (68), Expect = 3.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 97 NLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEI 156
N+E PP L + ++ +R N+T R K+ F+ FI +SFF E+
Sbjct: 310 NIEISPPVLKYRIGNEVVRIT--NDTMRQDMLKQKSDFVKFI----------DSFFHGEM 357
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 29.5 bits (67), Expect = 4.4
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 319 SSLIICVGILTGYTE----TLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 374
L+ V +L G T Y LS S V W L L+G+ +++ +VT
Sbjct: 95 GGLLALVSLLLGGGAGRGWTEYPPLSSTSSSPVDLWILGLLLVGIGSLLGAINFIVTILK 154
Query: 375 RKVK 378
R+
Sbjct: 155 RRAP 158
>gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor. This family includes
a number of gustatory and odorant receptors mainly from
insect species such as A. gambiae and D. melanogaster.
They are classified as G-protein-coupled receptors
(GPCRs), or seven-transmembrane receptors. They show
high sequence divergence, consistent with an ancient
origin for the family.
Length = 370
Score = 28.9 bits (65), Expect = 6.0
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 457 YYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLA 513
+ + + L+N +I ++Y L + LG + + + ++ +L A
Sbjct: 235 CFGLQLLLILLYNFLNITVLIYWLYSILLLGSSGFTLLVFVLWLLIFLLLLVLIVYA 291
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.428
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,753,835
Number of extensions: 2686162
Number of successful extensions: 3744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3682
Number of HSP's successfully gapped: 99
Length of query: 516
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 415
Effective length of database: 6,457,848
Effective search space: 2680006920
Effective search space used: 2680006920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)