RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010158
(516 letters)
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 170 bits (434), Expect = 7e-48
Identities = 86/340 (25%), Positives = 138/340 (40%), Gaps = 31/340 (9%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A S + E+R+R+ T +++ R+G FIP PG D I Q++L G V + +
Sbjct: 3 KAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKI-QEFLRTAQGGVFGIINL 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 261
G + S F LGI P I A+I+MQ+L +VP+L +L KEG +G I Y +
Sbjct: 62 FSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIA 121
Query: 262 FAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 316
+ +A + + S V V G + W+ + I+E G G
Sbjct: 122 LGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIG 181
Query: 317 QGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 376
G+SLII GI+ + + + + + V F L L + V + R+
Sbjct: 182 NGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAF-LFFLAFIVLAFAGMAAVQQAERR 240
Query: 377 VKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL 432
+ +QY G ++ YIP +N +G+ P++ +L P LA+
Sbjct: 241 IPVQYARKVVGGRVYGGQAT---------YIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 291
Query: 433 G-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
+P Q + NP I V LF
Sbjct: 292 QDNPVLQGIANFFNPTR------PSGLFIEVLLVILFTYV 325
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 169 bits (431), Expect = 1e-47
Identities = 95/340 (27%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
++ F+ E+R++ T ++ VI R+G IP+PG + + +D+L GSV L D
Sbjct: 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 260
G +L+ F LG+ P I ASI+MQ+L +PSL +L KE G G KI Y +++L
Sbjct: 62 FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121
Query: 261 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
A ++++ +A + S + + +++T LV G M + WI D I+E G
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 375
G G+SLII GI+ + + + ++ + +L ++ + + + V V E R
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPL-TLLLIIALIIAIIVGIVYVQEAER 240
Query: 376 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 431
++ +QY G +L + + Y+P INP+G+ P++ LL PS L +
Sbjct: 241 RIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIPSTLLNF 291
Query: 432 LGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
+ +PF + + ++ P Y +Y F+ F F
Sbjct: 292 VQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYF 325
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 165 bits (420), Expect = 5e-46
Identities = 78/342 (22%), Positives = 156/342 (45%), Gaps = 40/342 (11%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A ++ FK E+R R+ T + +++ R+G +IP+PG + + ++ + G
Sbjct: 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAW-GEIFRRIAETAGVAGIL 61
Query: 205 --------GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIW 256
GA + S F + ++P I ASI++Q+L ++PSL ++ +EG +G +K Y
Sbjct: 62 SFYDVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTR 121
Query: 257 WISLGFAILEAVIVACY---SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISES 313
++L +A V+ S P + + ++ +++ ++ G M + W+ + I+E
Sbjct: 122 RLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEK 181
Query: 314 GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEG 373
G G G S++I GI+ Y + + L + L+ V I ++V +
Sbjct: 182 GIGNGISILIFAGIVARYPSYIRQAYLGGLN-----LLEWIFLIAVALITIFGIILVQQA 236
Query: 374 CRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 429
R++ +QY G ++ A Y+P +N G+ P++ + +++ PS +A
Sbjct: 237 ERRITIQYARRVTGRRVYGGAST---------YLPIKVNQGGVIPIIFASAIVSIPSAIA 287
Query: 430 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
SI + ++ + ++Y IY VF F F
Sbjct: 288 SITNNETLKN---LFRAGG------FLYLLIYGLLVFFFTYF 320
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 165 bits (419), Expect = 8e-46
Identities = 86/331 (25%), Positives = 149/331 (45%), Gaps = 31/331 (9%)
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKLS 211
E++RRL +++ RIG FIP+PG D ++ L G++ E+ + GA + S
Sbjct: 11 ELKRRLLFVIGALIVFRIGSFIPIPGIDAAVL-AKLLEQQRGTIIEMFNMFSGGALSRAS 69
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 271
F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +A
Sbjct: 70 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 129
Query: 272 CYSLPYSIYAA---SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
+ LV G M + W+ + I+E G G G S+II GI+
Sbjct: 130 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 189
Query: 329 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY----YGF 384
G + + Q + + L + + VT + V V G R++ + Y G
Sbjct: 190 AGLPPAIAHTIEQARQGDLHFLVL-LLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248
Query: 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS----PFWQHV 440
++ +A ++P +N +G+ P + + ++ FP+ +AS G + +
Sbjct: 249 RVYAAQST---------HLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTI 299
Query: 441 KEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
L P +Y +YA + F F
Sbjct: 300 SLYLQPGQ------PLYVLLYASAIIFFCFF 324
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 125 bits (315), Expect = 2e-31
Identities = 54/347 (15%), Positives = 109/347 (31%), Gaps = 39/347 (11%)
Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
+ + +L T +++V+ I I + ++ F A +
Sbjct: 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI--PAIFEFWQT-------ITASRIGTL 70
Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
LGI P + A I+MQ+L + ++Q+ + + +S+ +EAV+
Sbjct: 71 ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFV- 127
Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG-- 330
+ + + + G++ + ++ + +S+ G G G L I G+
Sbjct: 128 ----GAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 183
Query: 331 ----YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386
E L V ++ ++G IV + V ++ L + K
Sbjct: 184 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTI-IVFLMVVYAECMRVEIPLAHGRIKG 242
Query: 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNP 446
A P PV+ L A + L + + +
Sbjct: 243 AVG------------KYPIKFVYVSNIPVILAAALFANIQLWGLALYRMG---IPILGHY 287
Query: 447 ETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYF 493
E YY + + I +I+Y + I V F
Sbjct: 288 EGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAM-IITCVMFGIF 333
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 124 bits (313), Expect = 6e-31
Identities = 64/381 (16%), Positives = 122/381 (32%), Gaps = 52/381 (13%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+ I L + +R R T V +++ + IP+ G R+ QDY
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI--QDYF 59
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
F+ A S LGI P + A I++Q+L + +++L +
Sbjct: 60 QFLRV-------VLAGRNGSILTLGIGPIVTAGIILQLL--VGSEIIKLDLANPEDRRFY 110
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
++ S+ EA + + + ++ L G + + + + +S
Sbjct: 111 QALQRVFSVFMCFFEAAVWI-LGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVS 169
Query: 312 ESGFGQGSSLIICVGILTG---------------------------YTETLYKMLSQLLG 344
+ G G G SL I G+ + +L L
Sbjct: 170 KWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229
Query: 345 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 404
++ +L V + ++ +VV +V++ L V P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIP-----LGYRGV------TVRGSYP 278
Query: 405 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF 464
P++ T L A + A +L + +P T +V Y I
Sbjct: 279 IRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRF-DPTTGSPISGFVLYVIPPRN 337
Query: 465 VFLFNIFDIVSILYTLLFTIT 485
+F + +I+Y +L I
Sbjct: 338 IFSVIDNPVRAIVYLILTVIF 358
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 100 bits (251), Expect = 6e-23
Identities = 57/395 (14%), Positives = 124/395 (31%), Gaps = 40/395 (10%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+FL I+ +L + K + + ++ TA+ + I + IPL G +
Sbjct: 4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
A + + +LGISP + + ++MQ+L V +
Sbjct: 64 WMRV--------ILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK---DRALF 112
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
+ I ++++ + + ++ L + + + + +
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIT--IQLFVAGLIVLLLDELLQ 170
Query: 312 ES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV 370
+ G G G SL I I + + G + + ++ L + T +
Sbjct: 171 KGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRAL 230
Query: 371 TEGCRKVKLQYYGFKLASAA-----------REDSPIT-----EVEPYIPFNINPSGMQP 414
E + L +A+ R D PI P + + P
Sbjct: 231 REAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIP 290
Query: 415 VLTTTYLLAFPSILASILGSPFWQHVKEILNP--ETSVGARPWVYYTIYAFFVFLFNIFD 472
++ + L++ +++ +L + F ++ L + P Y + +L
Sbjct: 291 IILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPES 350
Query: 473 IVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCF 507
S+L + + Y V F FS
Sbjct: 351 FGSVLEDPVHAVV------YIVFMLGSCAF-FSKT 378
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 87.8 bits (217), Expect = 1e-18
Identities = 55/397 (13%), Positives = 122/397 (30%), Gaps = 45/397 (11%)
Query: 129 MYKNRFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP 187
M R ++ ++ + +L F K ++ T +I PL G +P
Sbjct: 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVG-----LP 54
Query: 188 QDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDG 247
+ V+ + L + + G+ P I + +++Q+L ++++ +
Sbjct: 55 KATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLA--GLKVIKVNFKIQSD 112
Query: 248 HEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWIC 307
E +S ++ ++ I + SV + + F LV + + +
Sbjct: 113 RELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168
Query: 308 DTISES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMW 366
+ I + GF G+ +I V I T + + +G L+ + +
Sbjct: 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD-QTEAQGALINLIQGLRSK 227
Query: 367 AVVVTEGCRKVKLQYYGFKLASA---------------AREDSPIT-----EVEPYIPFN 406
G + Y L + R + PI P
Sbjct: 228 HKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIK 287
Query: 407 INPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE--------ILNPETSVGARP--WV 456
+ +G VL + +L + I A +L ++ ++ A P +
Sbjct: 288 LLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPL 347
Query: 457 YYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYF 493
F ++ + F + G+ +
Sbjct: 348 SLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADK 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 3e-09
Identities = 92/549 (16%), Positives = 161/549 (29%), Gaps = 192/549 (34%)
Query: 1 MEATLL---SSHHFTPQL---FT----------------TTPVKLGG---GHVLADNRFC 35
+E LL +S QL F TTP +L G G+V +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLV 72
Query: 36 HPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRAN-----------------KRYSV--- 75
P F V L +L + K +
Sbjct: 73 EPSKVGQFDQVLNLCLTE-------FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 76 -YSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDS------QGLRDVTDNETF---RS 125
++ + + +++SAL AV + QG ++ F R
Sbjct: 126 YITARIMAKRPFDKKSNSAL---FRAVG---EGNAQLVAIFGGQG----NTDDYFEELRD 175
Query: 126 KPKMYKNRFLNFIRLSS-VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRR 184
+ Y + I+ S+ L+ + +E ++F T L ++ + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KVF-TQGLNILEWLENPSNTP----- 226
Query: 185 LIPQDYL--SFVSG---SVDELGDFGAELKLSFFQLGISPQIVASILMQVLCH----IVP 235
+DYL +S V +L + K LG +P + S L H +
Sbjct: 227 --DKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 236 SLVQLRKEGLDGHEKIKSYI---WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292
+ ++ I ++I G EA SLP SI S + +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAY--PNTSLPPSILEDSLENNEGVPS 336
Query: 293 AFLLVCGAMTMSWICDTISE--SGFGQGSSLIICV--G----ILTGYTETLYKMLSQLLG 344
L + +T + D +++ S G + I + G +++G ++LY + L
Sbjct: 337 PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-- 393
Query: 345 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 404
RK K A + + S IP
Sbjct: 394 ------------------------------RKAK--------APSGLDQSR-------IP 408
Query: 405 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH------VKEILNPETSVGARPW--- 455
F S + + +L P + SPF H +++N + +
Sbjct: 409 F----SERKLKFSNRFL---P------VASPF--HSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 456 -----VYYT 459
VY T
Sbjct: 454 DIQIPVYDT 462
Score = 31.2 bits (70), Expect = 1.1
Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 87/234 (37%)
Query: 48 LSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQL-----RSDYV---NVEASSALSVNLE 99
LS+ + + QV + ++++ N ++ + V ++ L++ L
Sbjct: 339 LSISNLTQEQV----QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 100 AV--PPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRL---SSVLNNAAESFFKS 154
P LD Q F + + NRFL + S +L A++
Sbjct: 395 KAKAPSGLD-----Q------SRIPFSERKLKFSNRFLP-VASPFHSHLLVPASD----- 437
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
I + L V I IP+ +D + D G++L+
Sbjct: 438 LINKDLVKNNVSFNAKDIQ--IPV--YD--------------TFD-----GSDLR----- 469
Query: 215 LGISPQIVASILMQVLC--------------HIV---P-------SLVQLRKEG 244
+S I I+ ++ HI+ P L K+G
Sbjct: 470 -VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 82/579 (14%), Positives = 159/579 (27%), Gaps = 172/579 (29%)
Query: 9 HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSR 68
HH F T + +L+ FV + + V + + LS+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFE-------DAFVD------NFDCKDVQDMPKSILSK 48
Query: 69 ANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN-----ETF 123
+ + S D V + L L + + + + LR N
Sbjct: 49 EEIDHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPI 98
Query: 124 RSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDR 183
+++ + +I L N + F K + R + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------L 145
Query: 184 RLIPQDYLSFVSG------SV---DELGDFGAELKLSF--FQLGI----SPQIVASILMQ 228
L P + + G + D + + K+ F F L + SP+ V +L Q
Sbjct: 146 ELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-Q 203
Query: 229 VLCH-IVPSLVQLR-------------KEGLDGHEKIKSY---------IW--WISLGFA 263
L + I P+ + L K K Y +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------ 257
Query: 264 ILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLII 323
A ++C L + + VT FL A T + I
Sbjct: 258 AWNAFNLSCKILLTTRFKQ--------VTDFL---SAATTTHISLDHHSMTLTPDEVK-- 304
Query: 324 CVGILTGYTETLYKML-SQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 382
+L Y + + L ++L ++ P L ++ + ++
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTN----PRRLSIIA--------ESIRDGLATWDNWKHV 350
Query: 383 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPS---ILASILGSPFWQH 439
+ E S + + P+ + + L FP I +L W
Sbjct: 351 NCDKLTTIIESS----LN-----VLEPAEYRKMF--DRLSVFPPSAHIPTILLSL-IWFD 398
Query: 440 VKE-----ILNP--ETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSY 492
V + ++N + S+ + TI + ++ + + + + Y
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTIS---------------IPSIYLELKVKLENEY 443
Query: 493 -----FVEHFVII-VFP------------FSCFLLFHLA 513
V+H+ I F F + HL
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG,
heme, hydrogen peroxide, iron, metal-binding, organic
radical; HET: HEM; 2.0A {Mycobacterium tuberculosis}
SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Length = 740
Score = 31.2 bits (71), Expect = 0.99
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
+ L + + +++ +S WWP G G I W
Sbjct: 74 DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWH 108
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 31.1 bits (70), Expect = 1.0
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 131 KNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY 190
K+ + L AES + R LI+ G F PL GF + DY
Sbjct: 11 KDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMN---GGFSPLEGFMNQ---ADY 64
Query: 191 LS 192
Sbjct: 65 DR 66
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 30.8 bits (70), Expect = 1.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
E + L +L+ SS WWP G G I W T
Sbjct: 62 EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 100
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM;
2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Length = 720
Score = 29.7 bits (67), Expect = 2.5
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
L + L L+ S WWP G G I W
Sbjct: 62 LKQDLQALMTDSQDWWPADWGHYGGLMIRLTWH 94
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 3.9
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 9/39 (23%)
Query: 121 ETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRR 159
M N +L + FF + R
Sbjct: 121 HDLGQNYIMIPNE---------ILQTLLDLFFPGYSKGR 150
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 28.0 bits (63), Expect = 5.7
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 221 IVASILMQVLCHIVP----SLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 267
+ + VL I P ++++ +E ++ EK I+ GF LE
Sbjct: 99 VNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEK 149
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 28.7 bits (63), Expect = 5.9
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 206 AELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAIL 265
+ SF+ S IL L +P L +L Y SL F +L
Sbjct: 73 DKSTFSFWSGLYSETEGTLIL---LFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLL 129
Query: 266 EAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICV 325
+ A LP+S+Y + L ++ D I + +
Sbjct: 130 ATLFSALAGLPWSLYNTFVIEEKHGFNQQTL------GFFMKDAIKK---------FVVT 174
Query: 326 GILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 378
+ +L + ++ G + ++ L+ +VT++A + K
Sbjct: 175 QCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFT 227
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 28.1 bits (63), Expect = 8.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 299 GAMTMSWICDTISESGFGQGSSLIICVGILTG 330
G MSWI DT + G I +TG
Sbjct: 172 GEREMSWIADTYAS---TIGHYDINAHACVTG 200
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 28.0 bits (62), Expect = 9.6
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLS 192
+ +I +R + L+ + G F PL F +DY +
Sbjct: 4 IKYLKSIQISQRSVLDLELLAV---GAFTPLDRFMGE---EDYRN 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.428
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,913,849
Number of extensions: 474885
Number of successful extensions: 953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 903
Number of HSP's successfully gapped: 25
Length of query: 516
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 418
Effective length of database: 3,965,535
Effective search space: 1657593630
Effective search space used: 1657593630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.2 bits)