RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 010158
         (516 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  137 bits (346), Expect = 3e-36
 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 32/346 (9%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 331
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 332 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 389
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 390 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETS 449
                 I       P         PV+    L A   +    L          + + E  
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPI---LGHYEGG 289

Query: 450 VGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVE 495
                  YY    + +       I +I+Y +   IT  +   ++VE
Sbjct: 290 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVE 335


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 30.8 bits (69), Expect = 0.43
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
             + + L  L+ +S  WWP   G  G   I   W 
Sbjct: 44  AAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWH 78


>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 406

 Score = 30.1 bits (67), Expect = 0.64
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
           E +   L +L+ SS  WWP   G  G   I   W    T
Sbjct: 45  EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 83


>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 410

 Score = 30.0 bits (67), Expect = 0.79
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
           + L + + +++ +S  WWP   G  G   I   W    T
Sbjct: 49  DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGT 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,925,844
Number of extensions: 87866
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 17
Length of query: 516
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 427
Effective length of database: 1,185,626
Effective search space: 506262302
Effective search space used: 506262302
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)