BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010159
         (516 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 27/226 (11%)

Query: 175 GSILGLIQAIVLIAGAVPLLNFMGIGS--ESPMLSPAQKYLTLRSLGAPAVLLSLAMQGV 232
           G ILG+   I++ A   P  N++ +    E  M     +Y+   SL  PA ++  A+   
Sbjct: 100 GLILGIFGMILMWAAITPFRNWLTLSDYVEGTM----AQYMLFTSLAMPAAMVHRALHAY 155

Query: 233 FRGFKDTKTPLYATVAGDLTNIILDPIFIF----VFRLGVSGAAIAHVISQYLIAIILLW 288
                  +  +  + A  + N+ L+ IF++    +  LG +G  +A  ++ +  + + LW
Sbjct: 156 ASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGVA-TMAVFWFSALALW 214

Query: 289 KLIQQVDLIPPSMKRLKFGR-----FLQ-------NGFLLLIRVMAVTFCVTLSASLAAR 336
             I +     P     KFG+     F Q        G    +   A +F V L A     
Sbjct: 215 IYIAKEKFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPF--- 271

Query: 337 QGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERA 382
            G   +AA QV + +     ++   +  AG   +  S  ++++ RA
Sbjct: 272 -GEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRA 316



 Score = 32.3 bits (72), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 157 KYEHQR-RYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTL 215
           + E  R RYI   S  +V G +L +I  + L+    PL +      +  +LS A   L  
Sbjct: 310 RREFSRARYISGVS--LVSGWVLAVITVLSLVLFRSPLASMYN--DDPAVLSIASTVLLF 365

Query: 216 RSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFR--LGVSGAAI 273
             L  PA           RG+K TK P++   A       L P ++  +R  +G+ G   
Sbjct: 366 AGLFQPADFTQCIASYALRGYKVTKVPMFIHAAA-FWGCGLLPGYLLAYRFDMGIYGFWT 424

Query: 274 AHVISQYLIAIILLWKL 290
           A + S  + A+ L+W L
Sbjct: 425 ALIASLTIAAVALVWCL 441


>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 23/174 (13%)

Query: 193 LLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLT 252
           ++ FM +  E  M +    Y+       PA LL  A++    G   TK  +     G L 
Sbjct: 115 IIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLL 172

Query: 253 NIILDPIFIF----VFRLGVSGAAIAHVISQYLIAIILLWKLIQQVDLI---------PP 299
           NI L+ IF++       LG  G  +A  I  +++ ++LL+ ++    L           P
Sbjct: 173 NIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKP 232

Query: 300 SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLA---ARQGPTSMAAFQVCLQ 350
             K L   R  + GF +     A+ F VTL A +A   A  G T +AA QV L 
Sbjct: 233 QPKELI--RLFRLGFPV---AAALFFEVTLFAVVALLVAPLGSTVVAAHQVALN 281


>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
          Length = 304

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 175 GSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFR 234
             +L LI  IV       LL+ + + +E  M   A  +L   S+G   VL++L  QG + 
Sbjct: 174 NELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFL---SIGIKTVLITLGKQGTYF 230

Query: 235 GFKDTKTPLYATVAGDLTNIILDPIFI--FVFRLGVSGAAIAHVIS 278
             K+    + A     +        FI  FV RL  S   +A  I 
Sbjct: 231 ATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAID 276


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,420,926
Number of Sequences: 62578
Number of extensions: 444752
Number of successful extensions: 1144
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 7
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)