Query 010159
Match_columns 516
No_of_seqs 212 out of 1871
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 21:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.4E-53 3E-58 438.9 50.0 426 30-514 13-448 (455)
2 PRK10189 MATE family multidrug 100.0 8.9E-49 1.9E-53 406.9 51.1 426 31-513 26-466 (478)
3 PRK09575 vmrA multidrug efflux 100.0 7.7E-48 1.7E-52 399.0 48.7 423 27-506 5-435 (453)
4 PRK00187 multidrug efflux prot 100.0 9.6E-48 2.1E-52 399.0 48.0 427 29-513 5-450 (464)
5 PRK10367 DNA-damage-inducible 100.0 4.6E-47 1E-51 390.4 49.8 412 33-506 8-430 (441)
6 PRK01766 multidrug efflux prot 100.0 7.6E-46 1.6E-50 385.6 47.5 425 30-513 8-446 (456)
7 TIGR01695 mviN integral membra 100.0 1.6E-36 3.5E-41 319.9 49.3 412 36-508 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.6E-34 7.7E-39 301.0 47.2 408 37-508 2-435 (488)
9 PRK15099 O-antigen translocase 100.0 1E-32 2.2E-37 283.7 46.3 401 36-505 3-410 (416)
10 TIGR00797 matE putative efflux 100.0 9.3E-33 2E-37 276.7 38.7 334 42-432 1-341 (342)
11 PF03023 MVIN: MviN-like prote 100.0 9E-29 1.9E-33 255.1 46.0 349 156-509 47-405 (451)
12 KOG1347 Uncharacterized membra 100.0 1E-30 2.3E-35 267.1 26.6 425 31-514 25-457 (473)
13 COG0728 MviN Uncharacterized m 100.0 6.7E-27 1.5E-31 237.2 48.7 421 34-508 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 1.1E-26 2.4E-31 244.3 45.8 398 33-506 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 9.8E-23 2.1E-27 213.7 41.9 386 33-491 5-396 (480)
16 PRK10189 MATE family multidrug 99.9 5.4E-21 1.2E-25 199.0 29.3 205 301-505 23-235 (478)
17 PRK00187 multidrug efflux prot 99.9 1.2E-20 2.6E-25 196.2 27.9 202 302-504 5-212 (464)
18 COG0534 NorM Na+-driven multid 99.9 1.6E-20 3.6E-25 193.7 27.8 205 303-507 13-221 (455)
19 PRK10367 DNA-damage-inducible 99.9 2.6E-20 5.7E-25 192.0 27.7 201 305-505 7-210 (441)
20 PRK09575 vmrA multidrug efflux 99.9 5.1E-20 1.1E-24 191.1 27.6 202 305-506 10-214 (453)
21 PRK01766 multidrug efflux prot 99.9 1.1E-19 2.5E-24 189.1 28.4 204 303-506 8-217 (456)
22 TIGR00797 matE putative efflux 99.8 1.6E-16 3.5E-21 159.1 26.8 192 315-506 1-196 (342)
23 PF01943 Polysacc_synt: Polysa 99.7 5.9E-15 1.3E-19 142.5 30.6 269 37-373 2-272 (273)
24 PF01554 MatE: MatE; InterPro 99.7 3.3E-18 7.2E-23 152.0 6.3 161 315-475 1-162 (162)
25 TIGR01695 mviN integral membra 99.7 6.3E-15 1.4E-19 155.6 30.2 233 29-320 218-452 (502)
26 PF03023 MVIN: MviN-like prote 99.6 3.7E-13 8.1E-18 139.2 27.3 210 30-295 194-405 (451)
27 PF01554 MatE: MatE; InterPro 99.6 4.9E-15 1.1E-19 131.5 10.7 161 42-259 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.6 8.3E-14 1.8E-18 146.5 20.4 203 30-293 221-434 (488)
29 PRK10459 colanic acid exporter 99.6 6E-12 1.3E-16 132.5 31.9 201 31-293 204-405 (492)
30 PF13440 Polysacc_synt_3: Poly 99.5 1.1E-11 2.5E-16 118.1 28.6 245 53-372 3-250 (251)
31 COG0728 MviN Uncharacterized m 99.5 2.3E-11 5E-16 124.4 31.8 235 31-323 229-465 (518)
32 PRK15099 O-antigen translocase 99.5 1.5E-12 3.3E-17 134.0 21.6 202 29-293 210-412 (416)
33 COG2244 RfbX Membrane protein 99.4 7.4E-11 1.6E-15 123.9 24.3 187 30-278 209-396 (480)
34 KOG1347 Uncharacterized membra 99.2 1.8E-09 3.9E-14 111.2 20.1 201 304-505 25-228 (473)
35 KOG2864 Nuclear division RFT1 99.2 3.1E-07 6.8E-12 90.0 34.0 299 211-509 124-451 (530)
36 PF04506 Rft-1: Rft protein; 99.0 4.6E-07 9.9E-12 94.9 30.1 203 307-509 253-472 (549)
37 PF14667 Polysacc_synt_C: Poly 98.6 6.7E-06 1.5E-10 71.3 17.9 81 213-295 2-82 (146)
38 PF07260 ANKH: Progressive ank 98.4 0.00025 5.3E-09 67.3 24.9 256 32-351 9-285 (345)
39 PF14667 Polysacc_synt_C: Poly 98.4 1.7E-06 3.7E-11 75.0 9.3 82 428-509 1-82 (146)
40 PF01943 Polysacc_synt: Polysa 98.3 0.0003 6.6E-09 67.4 24.7 186 310-506 2-190 (273)
41 PF04506 Rft-1: Rft protein; 98.2 9.5E-05 2.1E-09 77.7 18.3 216 32-295 251-472 (549)
42 PF13440 Polysacc_synt_3: Poly 98.1 0.0017 3.7E-08 61.4 23.4 165 329-507 6-173 (251)
43 KOG2864 Nuclear division RFT1 98.0 0.0016 3.6E-08 64.5 20.7 213 33-300 238-456 (530)
44 COG4267 Predicted membrane pro 98.0 0.021 4.6E-07 55.4 33.7 278 211-498 132-437 (467)
45 PF07260 ANKH: Progressive ank 97.5 0.051 1.1E-06 51.9 22.3 163 305-477 9-180 (345)
46 COG4267 Predicted membrane pro 90.7 19 0.00041 35.8 22.3 148 345-506 62-210 (467)
47 PF04505 Dispanin: Interferon- 52.9 83 0.0018 23.9 6.9 37 362-398 36-72 (82)
48 PRK04288 antiholin-like protei 52.2 2E+02 0.0044 26.8 14.2 43 31-73 84-127 (232)
49 COG1346 LrgB Putative effector 47.7 2.3E+02 0.0051 26.2 13.0 44 30-73 80-124 (230)
50 PF04172 LrgB: LrgB-like famil 42.5 2.8E+02 0.006 25.6 13.5 44 30-73 67-111 (215)
51 PRK10711 hypothetical protein; 41.5 3E+02 0.0065 25.7 13.9 42 31-72 79-121 (231)
52 TIGR00659 conserved hypothetic 40.0 3.1E+02 0.0068 25.5 14.6 44 30-73 77-121 (226)
53 TIGR01478 STEVOR variant surfa 35.5 46 0.001 31.6 3.7 27 488-514 267-293 (295)
54 PTZ00370 STEVOR; Provisional 32.4 47 0.001 31.7 3.2 27 488-514 263-289 (296)
55 PHA02673 ORF109 EEV glycoprote 29.1 1.2E+02 0.0027 26.1 4.9 44 138-185 6-49 (161)
56 PF13347 MFS_2: MFS/sugar tran 28.8 6.3E+02 0.014 25.6 15.2 24 317-340 147-170 (428)
57 PF03594 BenE: Benzoate membra 22.0 8.3E+02 0.018 24.7 18.1 170 304-496 203-376 (378)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.4e-53 Score=438.90 Aligned_cols=426 Identities=29% Similarity=0.452 Sum_probs=391.4
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR 109 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (516)
++..|+++++++|++++++.+++++++|++++||+|++++||++++.++.+.+..+. .++....+++++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~-~gl~~g~~~lia---------- 81 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF-IGLGTGTTVLVA---------- 81 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH----------
Confidence 446899999999999999999999999999999999999999999999988776655 334444444433
Q ss_pred hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189 (516)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 189 (516)
|++|+||+++.++. ..+++.++++++++..++.+.+
T Consensus 82 -----------------------------------------q~~Ga~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 117 (455)
T COG0534 82 -----------------------------------------QAIGAGDRKKAKRV---LGQGLLLALLLGLLLAILLLFF 117 (455)
T ss_pred -----------------------------------------HHHcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555999999887 9999999999999999999999
Q ss_pred hHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh-cc-cc
Q 010159 190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV-FR-LG 267 (516)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~-~~-~G 267 (516)
.++++.+++.++| +.+.+.+|+++..++.|+..++.++.+.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|
T Consensus 118 ~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lG 195 (455)
T COG0534 118 AEPLLRLLGAPAE--VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLG 195 (455)
T ss_pred HHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 9999999998776 89999999999999999999999999999999999999999999999999999999998 57 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcc---CC---CchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHH
Q 010159 268 VSGAAIAHVISQYLIAIILLWKLIQQVD---LI---PPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTS 341 (516)
Q Consensus 268 v~Gaa~at~i~~~~~~l~~~~~~~~~~~---~~---~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~ 341 (516)
+.|+|+||++++.+..++..+++.++++ .. ..++++..+|++++.|.|.+++++.....+...+.+++++|++.
T Consensus 196 v~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~ 275 (455)
T COG0534 196 VAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVA 275 (455)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999999999999999999999887653 11 11344456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHH
Q 010159 342 MAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADV 421 (516)
Q Consensus 342 va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~ 421 (516)
+|+|+++.++.++.++++.|++++.+|++++++|++|+|++++..+.+.++++.++...+++++++++++.++|++|+|+
T Consensus 276 lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v 355 (455)
T COG0534 276 LAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEV 355 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHH-HHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 010159 422 VRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACS-MVFVAFVSILCLLGLSAT-NGFVGLWIGLTIYMSLRAFA 499 (516)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~-~~~~~~~~i~l~~~l~~~-~G~~G~~~a~~i~~~i~~~~ 499 (516)
.+.+..++++..+..++++.+.+..+.+||.||+|.++.. .+..|++.+|+.+++.+. +|..|+|+++..++.+..++
T Consensus 356 ~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~ 435 (455)
T COG0534 356 IALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAIL 435 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 556789999999999988 99999999999999999999
Q ss_pred HHHHHhcCCCCCccc
Q 010159 500 GFWRIGTGTGPWAFL 514 (516)
Q Consensus 500 ~~~~~~~~~~~w~~l 514 (516)
..+++++ ++|++.
T Consensus 436 ~~~~~~~--~~~~~~ 448 (455)
T COG0534 436 LLLRLRR--GRWRRK 448 (455)
T ss_pred HHHHHHH--hhhhhh
Confidence 9999987 556653
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.9e-49 Score=406.90 Aligned_cols=426 Identities=21% Similarity=0.278 Sum_probs=378.1
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVARE 110 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (516)
+..|+++++++|.+++++.+.+++++|..++|++|++++|+++++.++......+. .++....+++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~-~gl~~g~~~lvs----------- 93 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFF-AAIDLGTTVVVA----------- 93 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------
Confidence 45799999999999999999999999999999999999999999998877655443 333333443333
Q ss_pred hhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010159 111 AEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGA 190 (516)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 190 (516)
|++|++|+++.++. ..+++.+.++++++.+.+.+.+.
T Consensus 94 ----------------------------------------q~~Ga~~~~~~~~~---~~~~l~~~~~~~~~~~~l~~~~~ 130 (478)
T PRK10189 94 ----------------------------------------FSLGKRDRRRARAA---ARQSLVIMTLFAVLLAVLIHFFG 130 (478)
T ss_pred ----------------------------------------HHhcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhH
Confidence 35666999988887 99999999999999999999999
Q ss_pred HhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh----ccc
Q 010159 191 VPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV----FRL 266 (516)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~----~~~ 266 (516)
+++..++++..|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.+++..++|++++++++++ +++
T Consensus 131 ~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~l 210 (478)
T PRK10189 131 EQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGL 210 (478)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCcc
Confidence 9999999522233489999999999999999999999999999999999999999999999999999999975 489
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCc-------hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 010159 267 GVSGAAIAHVISQYLIAIILLWKLIQQ-VDLIPP-------SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQG 338 (516)
Q Consensus 267 Gv~Gaa~at~i~~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g 338 (516)
|+.|+++|+.+++.+..++..+++.++ ++..+. +.+...+|++++.|+|..++.........+.+.+++++|
T Consensus 211 Gv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G 290 (478)
T PRK10189 211 GFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG 290 (478)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999888776665543 211111 123346899999999999999999999998899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCC
Q 010159 339 PTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRD 418 (516)
Q Consensus 339 ~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d 418 (516)
++++|+++++.++.++.+++..|++++.+|++++++|++|++++++..+.+.++++.+++.++++++++++++.++|++|
T Consensus 291 ~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d 370 (478)
T PRK10189 291 TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQD 370 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHH-HHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHH
Q 010159 419 ADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAAC-SMVFVAFVSILCLLGLSA--TNGFVGLWIGLTIYMSL 495 (516)
Q Consensus 419 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~-~~~~~~~~~i~l~~~l~~--~~G~~G~~~a~~i~~~i 495 (516)
+|+.+.+..++++.++..++++.+.+..+.++|.||++.+++ +....+++.+|+.+++.. .+|..|+|++..+++.+
T Consensus 371 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~ 450 (478)
T PRK10189 371 PDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAV 450 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 466778999999998864 58999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcc
Q 010159 496 RAFAGFWRIGTGTGPWAF 513 (516)
Q Consensus 496 ~~~~~~~~~~~~~~~w~~ 513 (516)
..++..+++++ ++|++
T Consensus 451 ~~~~~~~r~~~--~~W~~ 466 (478)
T PRK10189 451 RGVLFYWRMVS--GRWLW 466 (478)
T ss_pred HHHHHHHHHHc--Ccccc
Confidence 99999999887 67877
No 3
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.7e-48 Score=399.02 Aligned_cols=423 Identities=17% Similarity=0.224 Sum_probs=376.1
Q ss_pred hccChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhh
Q 010159 27 LKLDELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIK 105 (516)
Q Consensus 27 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (516)
+.+++..|+++++++|.+++++.+.+++++|+.++|+ .|++++++++++.++.+....+. .++....++++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~-~~~~~g~~~lv------- 76 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIG-LMVGMGTGSLL------- 76 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHH-------
Confidence 3456778999999999999999999999999999999 59999999999988877655432 22222222332
Q ss_pred hhhhhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010159 106 SVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIV 185 (516)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 185 (516)
+ |++|++|+|+.++. ..+++.+.++++++..++
T Consensus 77 -----------------------s---------------------q~~Ga~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 109 (453)
T PRK09575 77 -----------------------S---------------------IKRGEGDLEKAKRI---LTTGLLLLLLLGPIVSVI 109 (453)
T ss_pred -----------------------H---------------------HHhcCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 2 35566899888887 999999999999999999
Q ss_pred HHHhhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcc
Q 010159 186 LIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFR 265 (516)
Q Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~ 265 (516)
.+.+++++..+++.+++ +.+.+.+|+++..++.|+..+.....+++|+.||++.+++.++.+.++|+++|+++++.++
T Consensus 110 ~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~ 187 (453)
T PRK09575 110 LFLFADDFLRAQGAEGR--TLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLD 187 (453)
T ss_pred HHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCC
Confidence 99999999999987766 8999999999999999999999999999999999999999999999999999999998889
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-----hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhCh-
Q 010159 266 LGVSGAAIAHVISQYLIAIILLWKLIQQVDLIPP-----SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGP- 339 (516)
Q Consensus 266 ~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~- 339 (516)
+|+.|+++++.+++.+..++..+++++|++..++ ++++..+|++++.|.|..++.....+...+.+.+++++|+
T Consensus 188 ~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (453)
T PRK09575 188 WGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSA 267 (453)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 9999999999999999998887777655433222 2233457999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC-C
Q 010159 340 TSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR-D 418 (516)
Q Consensus 340 ~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-d 418 (516)
+++|+++++.++..+..++..|++++..|++||++|+||+|++++..+.++++++..+++.++++..+++++.++|++ |
T Consensus 268 ~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~ 347 (453)
T PRK09575 268 LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGD 347 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999995 7
Q ss_pred HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010159 419 ADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAF 498 (516)
Q Consensus 419 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~ 498 (516)
||+.+.+.+++++..++.++++++.+..+.+++.||++.++..++..+++++|+.+++.+.+|+.|+|+++.+++.+..+
T Consensus 348 ~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~ 427 (453)
T PRK09575 348 SELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSL 427 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987788888999999998878999999999999998877
Q ss_pred HHHHHHhc
Q 010159 499 AGFWRIGT 506 (516)
Q Consensus 499 ~~~~~~~~ 506 (516)
+..+.+++
T Consensus 428 ~~~~~~~~ 435 (453)
T PRK09575 428 VVAPMLWR 435 (453)
T ss_pred HHHHHHHH
Confidence 76666654
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=9.6e-48 Score=398.95 Aligned_cols=427 Identities=19% Similarity=0.211 Sum_probs=371.4
Q ss_pred cChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 29 LDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 29 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
+++..|+++++++|.+++++.+.+.+++|+.+++|+|++++|+++++.++.+....+. .++.....++++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~-~gl~~~~~~i~a--------- 74 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFC-VGVIAAVGTLVA--------- 74 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------
Confidence 3445799999999999999999999999999999999999999999999887765543 333443444333
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA 188 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 188 (516)
|++|++|+++.++. ..+++.+.++++++..++.+
T Consensus 75 ------------------------------------------q~~Ga~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 108 (464)
T PRK00187 75 ------------------------------------------IRHGAGDIEGATRL---AQAGLWLAWLLALVAALLLW- 108 (464)
T ss_pred ------------------------------------------HHhcCCChhhHHHH---HHHHHHHHHHHHHHHHHHHH-
Confidence 46677999988887 89999999998888776655
Q ss_pred hhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh----c
Q 010159 189 GAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV----F 264 (516)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~----~ 264 (516)
+.++++.+++.++| +.+.+.+|+++..++.|+..+....++++|+.||++.+++.+++..++|+++|++|+++ |
T Consensus 109 ~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p 186 (464)
T PRK00187 109 NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLP 186 (464)
T ss_pred HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 67899999987666 89999999999999999999999999999999999999999999999999999999975 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhccC--CC-----chhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010159 265 RLGVSGAAIAHVISQYLIAIILLWKLIQQVDL--IP-----PSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ 337 (516)
Q Consensus 265 ~~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~--~~-----~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~ 337 (516)
++|+.|+++|+.+++.+..+....+++++++. .+ .+++...+|++++.++|.++++..+.....+++.+++++
T Consensus 187 ~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~ 266 (464)
T PRK00187 187 KLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGAL 266 (464)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999999988887776666553321 11 123334589999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC
Q 010159 338 GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR 417 (516)
Q Consensus 338 g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 417 (516)
|++++++++++.++..+.+++..|++++..++++|++|++|+|++++..+.++.+++.++++.+++++.+++++.++|++
T Consensus 267 G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~ 346 (464)
T PRK00187 267 GSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLD 346 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred --CH---HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHH-HHHHHHHHHHHHHhh--ccchHHHHHHH
Q 010159 418 --DA---DVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMV-FVAFVSILCLLGLSA--TNGFVGLWIGL 489 (516)
Q Consensus 418 --d~---~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~-~~~~~~i~l~~~l~~--~~G~~G~~~a~ 489 (516)
|+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++..+ ..|++++|+.+++.+ .+|+.|+|+++
T Consensus 347 ~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~ 426 (464)
T PRK00187 347 RNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGL 426 (464)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHH
Confidence 44 67888999999999999999999999999999999999999554 457999999999885 47999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcc
Q 010159 490 TIYMSLRAFAGFWRIGTGTGPWAF 513 (516)
Q Consensus 490 ~i~~~i~~~~~~~~~~~~~~~w~~ 513 (516)
.+++.+..+....+++.+..+|.+
T Consensus 427 ~i~~~~~~~~~~~~~~~~~~~~~~ 450 (464)
T PRK00187 427 ALGLACAAVALTLAFEWKTARLLR 450 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999888776666543333443
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.6e-47 Score=390.42 Aligned_cols=412 Identities=22% Similarity=0.294 Sum_probs=353.3
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHHHHHHHHhcc-ChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhh
Q 010159 33 GLEIAQIALPASLALTADPIASLIDTAFIGQI-GSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREA 111 (516)
Q Consensus 33 ~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~-g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (516)
.|+++++++|.+++++.+.+++++|+.++||+ |++++|+++++.++.+....+. .++....++++
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~-~~~~~g~~~lv------------- 73 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL-LFLRMSTTGLT------------- 73 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------------
Confidence 69999999999999999999999999999997 6779999999988887765543 22333333332
Q ss_pred hcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010159 112 EESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAV 191 (516)
Q Consensus 112 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 191 (516)
+ |+.|++|+++.++. ..+++.+.++++++...+...+.+
T Consensus 74 -----------------s---------------------q~~Ga~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 112 (441)
T PRK10367 74 -----------------A---------------------QAFGAKNPQALARA---LVQPLLLALGAGALIALLRTPLID 112 (441)
T ss_pred -----------------H---------------------HHhCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 35566899888887 999999999999988888888899
Q ss_pred hHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHH
Q 010159 192 PLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGA 271 (516)
Q Consensus 192 ~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Ga 271 (516)
+++.+++.++| +.+.+.+|+++..++.|+..+..+..+++|+.||+|.+++.+++++++|+++|+++++++++|+.|+
T Consensus 113 ~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Ga 190 (441)
T PRK10367 113 LALHIVGGSEA--VLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGA 190 (441)
T ss_pred HHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence 99999987776 8999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC--Cch-hh---hhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHH
Q 010159 272 AIAHVISQYLIAIILLWKLIQQVDLI--PPS-MK---RLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAF 345 (516)
Q Consensus 272 a~at~i~~~~~~l~~~~~~~~~~~~~--~~~-~~---~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~ 345 (516)
++||.+++.+..++..+++.++++.. +.+ ++ +..+|++++.|.|..++.......+.+.+.+++++|++++|+|
T Consensus 191 a~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~ 270 (441)
T PRK10367 191 ALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVN 270 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999998888777776543211 111 11 1357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHH
Q 010159 346 QVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLI 425 (516)
Q Consensus 346 ~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~ 425 (516)
+++.++.++.++++.|++++.+|+++|++|++|+|++++..+++.+++..++..++++++.+++++.++|++|+|+.+.+
T Consensus 271 ~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~ 350 (441)
T PRK10367 271 AVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLA 350 (441)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHhhhHHHHHHHHHHHHHhhcC---hhhHHHHHHHHH-HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 010159 426 GIGIPFVASTQPINSLAFVFDGINFGAS---DYAYAACSMVFV-AFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGF 501 (516)
Q Consensus 426 ~~~l~~~~~~~~~~~~~~i~~~~l~~~g---~~~~~~~~~~~~-~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~ 501 (516)
.+++++.++..+.........+++++.+ |++.++..+... |+ .++..+.+|..|+|++..+++.+..++..
T Consensus 351 ~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~-----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~ 425 (441)
T PRK10367 351 DRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFAL-----TLLTLPWLGNHGLWLALTVFLALRGLSLA 425 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH-----HHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 9999998876443334444444455554 599999855443 32 22233568999999999999999999998
Q ss_pred HHHhc
Q 010159 502 WRIGT 506 (516)
Q Consensus 502 ~~~~~ 506 (516)
+++++
T Consensus 426 ~~~~~ 430 (441)
T PRK10367 426 AIWRR 430 (441)
T ss_pred HHHHH
Confidence 88875
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7.6e-46 Score=385.59 Aligned_cols=425 Identities=22% Similarity=0.238 Sum_probs=374.1
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR 109 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (516)
++..|+++++++|.+++++.+.+++.+|..+++++|++++++++++.++......+. .++.....+.++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~-~g~~~a~~~~vs---------- 76 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFG-HGLLLALTPIVA---------- 76 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----------
Confidence 456899999999999999999999999999999999999999999877655443322 223333333333
Q ss_pred hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189 (516)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 189 (516)
+++|++|+++.++. .++++.+.++++++.+++.+.+
T Consensus 77 -----------------------------------------~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 112 (456)
T PRK01766 77 -----------------------------------------QLNGAGRRERIAHQ---VRQGLWLALFLSVLIMLVLYNA 112 (456)
T ss_pred -----------------------------------------HHhcCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 24555888887776 9999999999999999999999
Q ss_pred hHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh----cc
Q 010159 190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV----FR 265 (516)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~----~~ 265 (516)
.+++..+++.+++ +.+.+.+|+++..++.++..+....++++|+.||++.+++.++++.++|++++++++++ ++
T Consensus 113 ~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~ 190 (456)
T PRK01766 113 VPPILNMMNLEPE--VADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPE 190 (456)
T ss_pred HHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999987665 78999999999999999999999999999999999999999999999999999999864 57
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-----chhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 010159 266 LGVSGAAIAHVISQYLIAIILLWKLIQQVDLI--P-----PSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQG 338 (516)
Q Consensus 266 ~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~--~-----~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g 338 (516)
+|+.|+++++.+++.+..++..++.+++++.. + .+.++..+|++++.++|..++...+...+.++..+++++|
T Consensus 191 ~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G 270 (456)
T PRK01766 191 LGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG 270 (456)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999998887776543211 0 1223345899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCC
Q 010159 339 PTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRD 418 (516)
Q Consensus 339 ~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d 418 (516)
++++++++++.++.++..+++.|++.+..+.++|++|++|++++++..+.++.+++.++++.++++..+++++.++|++|
T Consensus 271 ~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d 350 (456)
T PRK01766 271 TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDD 350 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHH-HHHHHHHHHHHHhh--ccchHHHHHHHHHHHHH
Q 010159 419 ADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVF-VAFVSILCLLGLSA--TNGFVGLWIGLTIYMSL 495 (516)
Q Consensus 419 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~-~~~~~i~l~~~l~~--~~G~~G~~~a~~i~~~i 495 (516)
+++.+.+..++++..+..++++++....+++++.||++.+++..+. .+++++|+.+++.+ .+|+.|+|+++.+++.+
T Consensus 351 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~ 430 (456)
T PRK01766 351 PEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTA 430 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996555 56899999998774 58999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcc
Q 010159 496 RAFAGFWRIGTGTGPWAF 513 (516)
Q Consensus 496 ~~~~~~~~~~~~~~~w~~ 513 (516)
..++..+++++ .+|+.
T Consensus 431 ~~~~~~~~~~~--~~~~~ 446 (456)
T PRK01766 431 AAILLLLRLRK--LQRQP 446 (456)
T ss_pred HHHHHHHHHHH--HHHHH
Confidence 99988888876 34553
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.6e-36 Score=319.93 Aligned_cols=412 Identities=15% Similarity=0.095 Sum_probs=344.3
Q ss_pred HHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhh-hhhhHHHHHHHHHHHHhh-cchhhhhhhhhhchhhhhhhhhhhh
Q 010159 36 IAQIALPASLALTADPIASLIDTAFIGQ-IGSVEL-AAVGVSIALFNQVSRIAI-FPLVSVTTSFVAEEDAIKSVAREAE 112 (516)
Q Consensus 36 ~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~-aa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (516)
+.|.+.-..++++.+.+++++|..++++ +|++++ ++++.+.++.+.+..+.. .++..+..+...++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~----------- 70 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKA----------- 70 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------
Confidence 5688889999999999999999999999 999999 799999888877655432 22233332222210
Q ss_pred cccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcch-hhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 010159 113 ESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKY-EHQRRYIPSASSAMVIGS-ILGLIQAIVLIAGA 190 (516)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~-~~~~~~~~~~~~~~~~~l-~~~ll~~~~~~~~~ 190 (516)
+++ ++.++ ...+++.... +.+++..++.+.++
T Consensus 71 -------------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (502)
T TIGR01695 71 -------------------------------------------KKKEKEARR---AFANTVTTLLILSLLLVVLIGIFFA 104 (502)
T ss_pred -------------------------------------------HhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23333 3556555444 44445567778888
Q ss_pred HhHHhhcc--CCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccch
Q 010159 191 VPLLNFMG--IGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGV 268 (516)
Q Consensus 191 ~~i~~~~~--~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv 268 (516)
|++..+++ .+++ ..+.+.+|++++.++.++..+....++++|+.+|++.+++.+++.++++++..+++. +++|.
T Consensus 105 ~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~ 180 (502)
T TIGR01695 105 PFVISLLAPGFADE--TRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQ 180 (502)
T ss_pred HHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccch
Confidence 99998883 3333 678899999999999999999999999999999999999999999888776443333 67999
Q ss_pred hHHH--HHHHHHHHHHHHHHHHHHHHhccCCCc--hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Q 010159 269 SGAA--IAHVISQYLIAIILLWKLIQQVDLIPP--SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAA 344 (516)
Q Consensus 269 ~Gaa--~at~i~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~ 344 (516)
.|++ +++++++.+..++...+.+|++.+.++ ++++..+|++++++.|..+++....+...+|+.+.+.+|++++++
T Consensus 181 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~ 260 (502)
T TIGR01695 181 YSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSA 260 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 9988 999999999988887766554322233 234456899999999999999999999999999877779999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC----CH
Q 010159 345 FQVCLQVWLATSL-LADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR----DA 419 (516)
Q Consensus 345 ~~i~~~i~~~~~~-~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----d~ 419 (516)
|+.+.++.+++.. +..+++++..|.+++++|++|.++.++..+++.++...+++|.++++..+++++.++|.+ |+
T Consensus 261 ~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~ 340 (502)
T TIGR01695 261 LYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSE 340 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 9999999998764 678999999999999999999999999999999999999999999999999999999975 56
Q ss_pred HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 010159 420 DVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFA 499 (516)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~ 499 (516)
|..+.+.+++++++++.++.+++.++.+.+++.||+|.+++..+...++++++++++++.+|..|+|+++.+++.+...+
T Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~ 420 (502)
T TIGR01695 341 EDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVL 420 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999888888999999999999999999999999999999888
Q ss_pred HHHHHhcCC
Q 010159 500 GFWRIGTGT 508 (516)
Q Consensus 500 ~~~~~~~~~ 508 (516)
..++++|+.
T Consensus 421 ~~~~~~~~~ 429 (502)
T TIGR01695 421 LYLMLNRRL 429 (502)
T ss_pred HHHHHHHhc
Confidence 887777654
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.6e-34 Score=301.04 Aligned_cols=408 Identities=17% Similarity=0.222 Sum_probs=341.1
Q ss_pred HHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhccc
Q 010159 37 AQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESD 115 (516)
Q Consensus 37 ~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (516)
.|.+.|.+++++.+.+.+++|..+++| +|++++|+++.+.++.+....+..+++........++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~--------------- 66 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAE--------------- 66 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH---------------
Confidence 467899999999999999999999999 8999999999999988887777666666666655553
Q ss_pred ccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHh
Q 010159 116 SIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLN 195 (516)
Q Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~ 195 (516)
..|++|+++.++. +.+++.+.++.+++.+++.+.+++++..
T Consensus 67 ------------------------------------~~~~~~~~~~~~~---~~~~~~l~l~~~~~~~~l~~~~~~~i~~ 107 (488)
T TIGR02900 67 ------------------------------------ASAKNDRKNIKKI---LKVSLIFTLIWSLIVTAIVFLLSPFIAS 107 (488)
T ss_pred ------------------------------------HHhccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2233666666665 9999999999999998889899999888
Q ss_pred hccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh-----cccchhH
Q 010159 196 FMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV-----FRLGVSG 270 (516)
Q Consensus 196 ~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~-----~~~Gv~G 270 (516)
.++++++ ...+++++.+..++..+....++++|+.+|+|..+..++++.++|+.++..++.. .+.|+.|
T Consensus 108 ~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g 181 (488)
T TIGR02900 108 TLLKDER------SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAG 181 (488)
T ss_pred HHcCChh------HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 7754443 2457888889999999999999999999999999999999999998776655432 3567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCc------hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh----C-
Q 010159 271 AAIAHVISQYLIAIILLWKLIQQVD-LIPP------SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ----G- 338 (516)
Q Consensus 271 aa~at~i~~~~~~l~~~~~~~~~~~-~~~~------~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~----g- 338 (516)
+++++.+++.+..+....+.+|+++ +.+. +.++..+|++++++.|.+++++...+...+|+.++++. |
T Consensus 182 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~ 261 (488)
T TIGR02900 182 AYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGV 261 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998887666544322 1111 12234689999999999999999999999999988764 2
Q ss_pred --h---HHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 010159 339 --P---TSMAAF-QVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGA 412 (516)
Q Consensus 339 --~---~~va~~-~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 412 (516)
. +.++.| +++.++.+++..+..+++++..|.+++++|++|.++.++..+++.++...++.|.++++..+++++.
T Consensus 262 ~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 341 (488)
T TIGR02900 262 TYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELG 341 (488)
T ss_pred CHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223333 3566778888888899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHH
Q 010159 413 KLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLS--ATNGFVGLWIGLT 490 (516)
Q Consensus 413 ~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~--~~~G~~G~~~a~~ 490 (516)
.+|.++++ +.++++++++..++..++....+.+++.||+|.+++..+...+++++++++++ |.+|..|+|+++.
T Consensus 342 ~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~ 417 (488)
T TIGR02900 342 ALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFI 417 (488)
T ss_pred HHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99876554 57889999999999999999999999999999999988888899999999988 8999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 010159 491 IYMSLRAFAGFWRIGTGT 508 (516)
Q Consensus 491 i~~~i~~~~~~~~~~~~~ 508 (516)
+++++..++..+..+|..
T Consensus 418 i~~~~~~~~~~~~~~~~~ 435 (488)
T TIGR02900 418 ITSVLVTILNLAEIKKNI 435 (488)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998888887643
No 9
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1e-32 Score=283.66 Aligned_cols=401 Identities=13% Similarity=0.085 Sum_probs=329.8
Q ss_pred HHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhcc
Q 010159 36 IAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEES 114 (516)
Q Consensus 36 ~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (516)
++|.+.+...+.+...+.+++-..++.| +|++++|.++...++...+..+..+++....+...++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~-------------- 68 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQ-------------- 68 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHh--------------
Confidence 5678888999999999999999999999 9999999999887777665544434333333333221
Q ss_pred cccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q 010159 115 DSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLL 194 (516)
Q Consensus 115 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~ 194 (516)
+ ++|+++.++. +.+++.+.++.+++.+++.+.+.+++.
T Consensus 69 -------------------------------------~--~~~~~~~~~~---~~~~~~l~~~~~~i~~~~~~~~~~~i~ 106 (416)
T PRK15099 69 -------------------------------------Y--HDQPQQLRAV---VGTSSAMVLGFSTLLALVFLLAAAPIS 106 (416)
T ss_pred -------------------------------------c--CCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1555555555 999999999999999999999999999
Q ss_pred hhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHHHHH
Q 010159 195 NFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIA 274 (516)
Q Consensus 195 ~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Gaa~a 274 (516)
..++++++ ...+..+..+..+...+.....+.+|+.+|++.++..++++.++|+.+ +++++. ..|+.|++++
T Consensus 107 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~ia 178 (416)
T PRK15099 107 QGLFGHTD------YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLG 178 (416)
T ss_pred HHhCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHH
Confidence 87765553 245666666666677888899999999999999999999999999877 444432 2499999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccC----CCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHh-hhChHHHHHHHHHH
Q 010159 275 HVISQYLIAIILLWKLIQQVDL----IPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAA-RQGPTSMAAFQVCL 349 (516)
Q Consensus 275 t~i~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~-~~g~~~va~~~i~~ 349 (516)
+++++.+..+...++.+|+++. .+.++++..+|+++++|.|..+++....+.+..++.+++ .+|++++|.|+++.
T Consensus 179 t~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~ 258 (416)
T PRK15099 179 LALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVS 258 (416)
T ss_pred HHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHH
Confidence 9999999887776666554321 123344556899999999999999999999999999996 77999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhh
Q 010159 350 QVWLA-TSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIG 428 (516)
Q Consensus 350 ~i~~~-~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~ 428 (516)
|+.+. ...+..+++++.+|.+++. +|.++.++..++..+....++.+.++++.+++++++++|.+|+. +.+.++
T Consensus 259 ~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~--~~~~~~ 333 (416)
T PRK15099 259 SISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKF--TAMRDL 333 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHH
Confidence 99774 4889999999999999995 67889999999999999999999999999999999999987662 246889
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 429 IPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIG 505 (516)
Q Consensus 429 l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~~~~ 505 (516)
++++++..++...+......+.+.++++......+...++++|++++++|.+|..|++++..+++++...+......
T Consensus 334 ~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 334 FAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877778888888888888899999999999999999999999999999988876655544
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=9.3e-33 Score=276.75 Aligned_cols=334 Identities=37% Similarity=0.526 Sum_probs=292.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhccccccccc
Q 010159 42 PASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGS 121 (516)
Q Consensus 42 p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (516)
|.+++++...++..+|+.+++++|++++++++++.++.+....+. .++.....+.+++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~-~~i~~~~~~~~s~--------------------- 58 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSIL-MGLGTATTALVAQ--------------------- 58 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHH-HHHHHhHHHHHHH---------------------
Confidence 788999999999999999999999999999999987766555443 3444444444432
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhccCCC
Q 010159 122 ANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGS 201 (516)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~~~~~~~ 201 (516)
+.|++|+++.++. ++..+.+..+++++.+++.+.+++++..+++.++
T Consensus 59 ------------------------------~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 105 (342)
T TIGR00797 59 ------------------------------AVGAGNYQRLGRQ---AQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADG 105 (342)
T ss_pred ------------------------------HHCCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCH
Confidence 3444777777666 9999999999999999999999999999987555
Q ss_pred CccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHh-hcc-cchhHHHHHHHHHH
Q 010159 202 ESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIF-VFR-LGVSGAAIAHVISQ 279 (516)
Q Consensus 202 ~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~-~~~-~Gv~Gaa~at~i~~ 279 (516)
+ ..+.+..|++++.+..++..+..+..+++|+.||++.+...++++.+++++++++++. ..+ +|+.|+++++.+++
T Consensus 106 ~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~ 183 (342)
T TIGR00797 106 E--VAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISY 183 (342)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHH
Confidence 4 6888999999999999999999999999999999999999999999999999999887 556 88999999999999
Q ss_pred HHHHHHHHHHHHHhccC-----CCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Q 010159 280 YLIAIILLWKLIQQVDL-----IPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLA 354 (516)
Q Consensus 280 ~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~ 354 (516)
.+..++..++.+|+.+. .+.++++..+|++++++.|.+++++...+...+++.+++.+|++++++|+++.++.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~ 263 (342)
T TIGR00797 184 WLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESL 263 (342)
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99988887776653221 1133444568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHH
Q 010159 355 TSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFV 432 (516)
Q Consensus 355 ~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~ 432 (516)
..+++.+++++..|.+++++|++|.++.++..++++++.+.++++..+++.++++++.++|++||++.+.+..++++.
T Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 264 LFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888888775
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=9e-29 Score=255.11 Aligned_cols=349 Identities=17% Similarity=0.176 Sum_probs=310.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 010159 156 PKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRG 235 (516)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~ 235 (516)
+++++.++. .++.+.+..+..++++++.+++++++.+.+....+++..+.+.++++++.+..++..+..++.+++|+
T Consensus 47 ~~~~~~~~f---~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~ 123 (451)
T PF03023_consen 47 KGEEEARRF---ISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNA 123 (451)
T ss_pred cCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 77777888888888899999999999998865555567899999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhhhhhHhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--hhhhhhHHhHH
Q 010159 236 FKDTKTPLYATVAGDLTNIILDPIFIFVFRLG---VSGAAIAHVISQYLIAIILLWKLIQQVDLIPP--SMKRLKFGRFL 310 (516)
Q Consensus 236 ~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~G---v~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~i~ 310 (516)
++|...+....++.++..++..+++. ...| +.+.+++..++..++.++.....+|...+.++ ++++...|+++
T Consensus 124 ~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (451)
T PF03023_consen 124 HRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFL 201 (451)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHH
Confidence 99999999999998877655433333 4566 89999999999999999998888776554444 44556789999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHH
Q 010159 311 QNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATS-LLADGLAVAGQAILASSFAKKDYERATSSAARV 389 (516)
Q Consensus 311 ~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~-~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~ 389 (516)
+...|..+.....++...+++.+.+.+++.++++++.++++.+++. .+..+++++..|.+++...++|.++.++..++.
T Consensus 202 ~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~ 281 (451)
T PF03023_consen 202 KLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKA 281 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 667799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhcCC----CHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Q 010159 390 LQLGLVLGLVLGAILGVALQYGAKLFTR----DADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFV 465 (516)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~----d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~ 465 (516)
++..+.+.+|.++.+..+++++++++.+ |.+..+.+...+++++++.++.+++.++...+++.||+|.+++.++..
T Consensus 282 l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~ 361 (451)
T PF03023_consen 282 LRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH
Confidence 9999999999999999999999987742 566678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010159 466 AFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTGTG 509 (516)
Q Consensus 466 ~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~~~~~~~~ 509 (516)
.++++.+++++.+.+|..|+.+++.++..+..++..+.++|+.+
T Consensus 362 ~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 362 VVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999888887654
No 12
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.98 E-value=1e-30 Score=267.13 Aligned_cols=425 Identities=23% Similarity=0.287 Sum_probs=371.6
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVARE 110 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (516)
...|++++++.|.++..+.+...+++|..++||+|+.++++.+++++..|... .+.........+++|+
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~-------~s~~~gl~~aletlcg---- 93 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITG-------VSILLGLQLALDTLCG---- 93 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccc-------hHHhhccchhhhcchH----
Confidence 44699999999999999999999999999999999999999999988777522 2233333334444444
Q ss_pred hhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010159 111 AEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGA 190 (516)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 190 (516)
|++|+++.+....+ ..++....+..+++.. ..+.+.
T Consensus 94 ----------------------------------------Qa~ga~~~~~lg~~---lqrs~~~l~~~~~~~~-~l~~~~ 129 (473)
T KOG1347|consen 94 ----------------------------------------QAFGAKKFTALGVY---LQRSGIVLLVQGLPIS-LLILNS 129 (473)
T ss_pred ----------------------------------------hhhcccccchhhHH---HHHHHHHHHHHHHHHH-HHHHcc
Confidence 46667888888887 7788777777777765 466788
Q ss_pred HhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhH
Q 010159 191 VPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSG 270 (516)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~G 270 (516)
++++..++++++ +...+..|.+++.+..+.......+..++|+++++....+.......+|+.+++++++.+++|..|
T Consensus 130 ~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~G 207 (473)
T KOG1347|consen 130 EPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKG 207 (473)
T ss_pred HHHHHHhCCChh--HHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCcc
Confidence 999999998887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-c--CCCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhC--hHHHHHH
Q 010159 271 AAIAHVISQYLIAIILLWKLIQQV-D--LIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQG--PTSMAAF 345 (516)
Q Consensus 271 aa~at~i~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g--~~~va~~ 345 (516)
++++..+++.+.......|..... . +..+..+...+++++++++|..++...++..+.+.....+.++ ..++++.
T Consensus 208 aala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~ 287 (473)
T KOG1347|consen 208 AALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQ 287 (473)
T ss_pred chHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 999999999999999888876532 1 1122233446889999999999999999999999999999886 5899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHH
Q 010159 346 QVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLI 425 (516)
Q Consensus 346 ~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~ 425 (516)
++..++....++++.+++.+..+++++.+|+++++++|...+.+...++..+...+..+....+.+..+|++|+++.+..
T Consensus 288 sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~v 367 (473)
T KOG1347|consen 288 SICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLV 367 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHH-HHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHH
Q 010159 426 GIGIPFVASTQPINSLAFVFDGINFGASDYAYAAC-SMVFVAFVSILCLLGLS--ATNGFVGLWIGLTIYMSLRAFAGFW 502 (516)
Q Consensus 426 ~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~-~~~~~~~~~i~l~~~l~--~~~G~~G~~~a~~i~~~i~~~~~~~ 502 (516)
.+..++++++.++++.+.++.+..++.|.++...+ +.....++++|..+.+. .++|..|+|.++..+..+....+..
T Consensus 368 a~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~ 447 (473)
T KOG1347|consen 368 ADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAI 447 (473)
T ss_pred HHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 55666788999988877 4689999999999997777777666
Q ss_pred HHhcCCCCCccc
Q 010159 503 RIGTGTGPWAFL 514 (516)
Q Consensus 503 ~~~~~~~~w~~l 514 (516)
...+ .||++.
T Consensus 448 ~~~~--tdW~~~ 457 (473)
T KOG1347|consen 448 VTAR--TDWKNQ 457 (473)
T ss_pred heee--ccHHHH
Confidence 6554 788763
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=6.7e-27 Score=237.22 Aligned_cols=421 Identities=17% Similarity=0.083 Sum_probs=346.6
Q ss_pred HHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhh-hhhhhHHHHHHHHHHHHhhcch-hhhhhhhhhchhhhhhhhhh
Q 010159 34 LEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVE-LAAVGVSIALFNQVSRIAIFPL-VSVTTSFVAEEDAIKSVARE 110 (516)
Q Consensus 34 ~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~-~aa~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (516)
+.++|-++-.....+.+.+.+++...+++. +|... -.|+.++..+.|.+-++..-+. .++..|...++
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~--------- 77 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEA--------- 77 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHH---------
Confidence 667777888888888999999999999999 99854 4599999999999888763221 22223332221
Q ss_pred hhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010159 111 AEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGA 190 (516)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 190 (516)
++++..++.++...........+.++++++..+++
T Consensus 78 ---------------------------------------------~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~ 112 (518)
T COG0728 78 ---------------------------------------------KKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFA 112 (518)
T ss_pred ---------------------------------------------HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12221222222233444466677778888889999
Q ss_pred HhHHhhccCCC-CccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchh
Q 010159 191 VPLLNFMGIGS-ESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVS 269 (516)
Q Consensus 191 ~~i~~~~~~~~-~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~ 269 (516)
|++.+....+. |++....+....+++.|..++..+.....+.+++.+|...+.+..+..++.-+.....+......-..
T Consensus 113 p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~ 192 (518)
T COG0728 113 PWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLL 192 (518)
T ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHH
Confidence 99995543332 22233368888999999999999999999999999999999999999988877555544433222467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCc--hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Q 010159 270 GAAIAHVISQYLIAIILLWKLIQQVDLIPP--SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQV 347 (516)
Q Consensus 270 Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i 347 (516)
+.+|+++++-+.+.++.+..++|..-..++ ++++...|++.+.-.|..+.....++...+++.+.+.+.+.+++.++.
T Consensus 193 ~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~Y 272 (518)
T COG0728 193 ALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYY 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 899999999999999999998876543333 445567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC----CHHHH
Q 010159 348 CLQVWLATS-LLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR----DADVV 422 (516)
Q Consensus 348 ~~~i~~~~~-~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----d~~~~ 422 (516)
++++.+++. ++..++++...|.+|++..++|.++.++..++++++++.+++|.++++..+++++++++.. +++..
T Consensus 273 A~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~ 352 (518)
T COG0728 273 ADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDV 352 (518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 999999996 7889999999999999999999999999999999999999999999999999999877632 45556
Q ss_pred HHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 010159 423 RLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFW 502 (516)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~ 502 (516)
..+.+.+++++++.++..+..++...+++.+|+|.|++..+...++|+.+++++.+.+|..|++++..++..+.+.+.++
T Consensus 353 ~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~ 432 (518)
T COG0728 353 LMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYY 432 (518)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhcCC
Q 010159 503 RIGTGT 508 (516)
Q Consensus 503 ~~~~~~ 508 (516)
.++|+.
T Consensus 433 ~l~k~~ 438 (518)
T COG0728 433 LLRKRL 438 (518)
T ss_pred HHHHhc
Confidence 777654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=1.1e-26 Score=244.29 Aligned_cols=398 Identities=9% Similarity=0.076 Sum_probs=325.4
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhh
Q 010159 33 GLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREA 111 (516)
Q Consensus 33 ~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (516)
.++..+-+.+..+++....+.+++-..++.| +|++++|.++.+..+.+....+..+|+..... +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~----------- 68 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----Q----------- 68 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----h-----------
Confidence 4778899999999999999999999999999 99999999999988888777666655444221 1
Q ss_pred hcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010159 112 EESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAV 191 (516)
Q Consensus 112 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 191 (516)
+++++.++ ..+.+.+.++.+++..++.+.+++
T Consensus 69 --------------------------------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 100 (492)
T PRK10459 69 --------------------------------------------RQDISHLQ----LSTLYWLNVGLGIVVFVLVFLLSP 100 (492)
T ss_pred --------------------------------------------cccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121222 455666777777777777778888
Q ss_pred hHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHH
Q 010159 192 PLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGA 271 (516)
Q Consensus 192 ~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Ga 271 (516)
++..+++.++ ....+.+..+..++..+.....+.++..+|.+......++..++..++...+.+ .++|+.+.
T Consensus 101 ~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l 172 (492)
T PRK10459 101 LIADFYHNPE-------LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAA 172 (492)
T ss_pred HHHHHcCChh-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHH
Confidence 8877765332 345677777888888888889999999999999999888888887776665554 47899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHH
Q 010159 272 AIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQVCLQ 350 (516)
Q Consensus 272 a~at~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~i~~~ 350 (516)
++++.++..+..++..... +++.+.++++++...|++++++.|...+++...+...+|+.+++.+ |++++|.|+.+.+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~ 251 (492)
T PRK10459 173 ILGYLVNSSVRTLLFGYFG-RKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYN 251 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCCccceecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHH
Confidence 9999999988776554333 2222223334455689999999999999999999999999999887 9999999999999
Q ss_pred HHHHHHH-HHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhH
Q 010159 351 VWLATSL-LADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGI 429 (516)
Q Consensus 351 i~~~~~~-~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l 429 (516)
+.+.+.. +...+++...|..++. ++|.++.++.+++..++...+++|+.+++.+++++++.++.+|+ .+.+.+.+
T Consensus 252 l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l 327 (492)
T PRK10459 252 VATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPIL 327 (492)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHH
Confidence 9987654 4556788999999885 67889999999999999999999999999999999998887655 35678999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 430 PFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 430 ~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
+++++...+..+.......+++.||+|..++..+...++.+|..+++.+.+|..|+++++.+++.+...+..+..+|
T Consensus 328 ~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 328 QLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999988887776633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=9.8e-23 Score=213.75 Aligned_cols=386 Identities=16% Similarity=0.130 Sum_probs=300.0
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhh
Q 010159 33 GLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREA 111 (516)
Q Consensus 33 ~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (516)
.+++.|.+.....+++...+.+++-...++| +|+++.|.++.+.++...+..++.+++....+...+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~---------- 74 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEY---------- 74 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHh----------
Confidence 5889999999999999999999999999999 99999999999999999988888777777666665532
Q ss_pred hcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 010159 112 EESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPS-ASSAMVIGSILGLIQAIVLIAGA 190 (516)
Q Consensus 112 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~ 190 (516)
+++++....... ........+..+.+.........
T Consensus 75 --------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (480)
T COG2244 75 --------------------------------------------REKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLA 110 (480)
T ss_pred --------------------------------------------hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111111 22222222222222222111111
Q ss_pred HhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhH
Q 010159 191 VPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSG 270 (516)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~G 270 (516)
+. + +.....+.+..+..+.........+++|+.++.+......+.. ..-+...+.+. ......
T Consensus 111 ~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~ 173 (480)
T COG2244 111 PI-------D------PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGL 173 (480)
T ss_pred cc-------C------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhH
Confidence 11 1 2245667788889999999999999999999999999984444 11111112222 134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccCCCchhh--hhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHH
Q 010159 271 AAIAHVISQYLIAIILLWKLIQ-QVDLIPPSMK--RLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQ 346 (516)
Q Consensus 271 aa~at~i~~~~~~l~~~~~~~~-~~~~~~~~~~--~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~ 346 (516)
..++...+..........+..+ +++..+..++ ...+|+.++++.|..+.+....+...+|+.+++.+ |++++|.|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~ 253 (480)
T COG2244 174 AVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS 253 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc
Confidence 5666666766666555555532 2222233333 45689999999999999999999999999999988 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHH
Q 010159 347 VCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIG 426 (516)
Q Consensus 347 i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~ 426 (516)
.+.++......+..+++.+..|.+++...++|.++.++..++..++...+++|..+++..+++++..++.+++.. .+.
T Consensus 254 ~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~ 331 (480)
T COG2244 254 AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAA 331 (480)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chh
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766542 278
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010159 427 IGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTI 491 (516)
Q Consensus 427 ~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i 491 (516)
..++++++..++.+........+++.|+++..++......++++.+++++++.+|..|+..+...
T Consensus 332 ~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 332 PILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998833
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=5.4e-21 Score=199.01 Aligned_cols=205 Identities=19% Similarity=0.190 Sum_probs=191.0
Q ss_pred hhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHH
Q 010159 301 MKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYE 380 (516)
Q Consensus 301 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~ 380 (516)
++-..+|+++++++|.+++++.......+|+.+++++|++++|+++++.++..+...+..+++++..+.+||++|++|+|
T Consensus 23 ~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 23 YRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 33345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcC--CCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHH
Q 010159 381 RATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFT--RDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYA 458 (516)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~ 458 (516)
++++..+.++.+++.++++.+++...+++++..+|. .|+|+.+.+.+++++..++.++..+...+.+.+|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 459 ACSMVFVAFVSILCLLGLSA------TNGFVGLWIGLTIYMSLRAFAGFWRIG 505 (516)
Q Consensus 459 ~~~~~~~~~~~i~l~~~l~~------~~G~~G~~~a~~i~~~i~~~~~~~~~~ 505 (516)
++..+...++|++++++++. .+|+.|+|+++.+++.+..++..+.+.
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999998874 679999999999999988776555443
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.2e-20 Score=196.25 Aligned_cols=202 Identities=18% Similarity=0.113 Sum_probs=186.1
Q ss_pred hhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHH
Q 010159 302 KRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYER 381 (516)
Q Consensus 302 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~ 381 (516)
++..+|++++.++|.+++++...+...+|+.+++++|++++++++++.++.++...+..+++++..++++|++|++|+|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHH
Q 010159 382 ATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACS 461 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 461 (516)
+++..++++.+.+.++++..++.. +.+++.++|+.|+|+.+.+.+++++..++.++..+.....+.+++.||++.+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999998877655 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHHH
Q 010159 462 MVFVAFVSILCLLGLSA------TNGFVGLWIGLTIYMSLRAFAGFWRI 504 (516)
Q Consensus 462 ~~~~~~~~i~l~~~l~~------~~G~~G~~~a~~i~~~i~~~~~~~~~ 504 (516)
.+...++|++++++++. .+|+.|+++++.+++.+..+...+++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~ 212 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYI 212 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 47999999999999877665444333
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.6e-20 Score=193.66 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=196.8
Q ss_pred hhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHH
Q 010159 303 RLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERA 382 (516)
Q Consensus 303 ~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~ 382 (516)
+...|+++++++|.+++++.....+.+|+.++++++++++++-++++++..+...+..+++.+..+.++|.+|+||++++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHH
Q 010159 383 TSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSM 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~ 462 (516)
++..++++.++++++++..++...+++++..++.+++|+.+.+.+|+++..++.++..++..+.+.+++.||+|.+++..
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010159 463 VFVAFVSILCLLGLSAT----NGFVGLWIGLTIYMSLRAFAGFWRIGTG 507 (516)
Q Consensus 463 ~~~~~~~i~l~~~l~~~----~G~~G~~~a~~i~~~i~~~~~~~~~~~~ 507 (516)
+...++|+++++++++. +|+.|+++|+.+++.+..++..+.+.++
T Consensus 173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999975 8999999999999999988877777654
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=2.6e-20 Score=191.99 Aligned_cols=201 Identities=12% Similarity=0.085 Sum_probs=188.3
Q ss_pred hHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHH
Q 010159 305 KFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERAT 383 (516)
Q Consensus 305 ~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~ 383 (516)
+.|++++++.|..++++.......+|+.+++++ |++++++.+++.++.++...+..+++.+..+.+||++|++|+|+++
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~ 86 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALA 86 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 478999999999999999999999999999999 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHH
Q 010159 384 SSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMV 463 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~ 463 (516)
+..++++.+++..++++.+....+.+++..+++.|+|+.+.+.+|+++..++.++..+..+..+.+|+.||+|.+++..+
T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~i 166 (441)
T PRK10367 87 RALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLV 166 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH
Confidence 99999999999999999888888899999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 464 FVAFVSILCLLGLSA--TNGFVGLWIGLTIYMSLRAFAGFWRIG 505 (516)
Q Consensus 464 ~~~~~~i~l~~~l~~--~~G~~G~~~a~~i~~~i~~~~~~~~~~ 505 (516)
...++|+++++++++ .+|+.|+++++.+++.+..++..+.+.
T Consensus 167 i~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 167 VGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999886 679999999999999887766544443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=5.1e-20 Score=191.15 Aligned_cols=202 Identities=13% Similarity=0.057 Sum_probs=191.0
Q ss_pred hHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHH
Q 010159 305 KFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERAT 383 (516)
Q Consensus 305 ~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~ 383 (516)
..|++++.++|.+++++...+...+|+.+++++ |++++++++++.++.++...+..+++.+..+.++|++|++|+|+++
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~ 89 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAK 89 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHH
Confidence 478999999999999999999999999999997 9999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHH
Q 010159 384 SSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMV 463 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~ 463 (516)
+..+++..+++.++++..+++..+++++..+|+.|+++.+.+.+++++..++.++..+.....+++++.||++.++...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 169 (453)
T PRK09575 90 RILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMV 169 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 464 FVAFVSILCLLGLSA--TNGFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 464 ~~~~~~i~l~~~l~~--~~G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
...++|+++++++++ .+|+.|+++++.+++.+..++..+++.+
T Consensus 170 ~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 170 IGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 888999999999986 5899999999999999988876665554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=1.1e-19 Score=189.14 Aligned_cols=204 Identities=18% Similarity=0.121 Sum_probs=191.1
Q ss_pred hhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHH
Q 010159 303 RLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERA 382 (516)
Q Consensus 303 ~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~ 382 (516)
+..+|+++++++|.+++++..++...+|+.+++++|++++++++++.++..+...+..+++.+..|.+|+++|++|++++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 44589999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHH
Q 010159 383 TSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSM 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~ 462 (516)
++..++++.+++.+++++.+++..+++++..++..|+++.+.+.+++++.+++.++..+..+..+++++.||++.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHh------hccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 463 VFVAFVSILCLLGLS------ATNGFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 463 ~~~~~~~i~l~~~l~------~~~G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
+...+++++++++++ |.+|+.|+++++.+++.+..++..+.+++
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999887 45899999999999999988877666554
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=1.6e-16 Score=159.14 Aligned_cols=192 Identities=20% Similarity=0.206 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q 010159 315 LLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGL 394 (516)
Q Consensus 315 p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~ 394 (516)
|.+++++...+...+++.+++++|++++++++.+.++..+...+..+++++..|.++++.|++|+|++++..++...+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 010159 395 VLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLL 474 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~ 474 (516)
.++++.++++.++++++.++++.|++..+.+.+++++++++.++.++..+..+++++.||.+..++..+...++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888899999999999999999999999999999999999988888899999988
Q ss_pred HHhh-cc---chHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 475 GLSA-TN---GFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 475 ~l~~-~~---G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
++.+ .+ |..|+++++.+++++..++..+.+++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876 54 49999999999999988877666554
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.74 E-value=5.9e-15 Score=142.48 Aligned_cols=269 Identities=19% Similarity=0.228 Sum_probs=200.3
Q ss_pred HHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhccc
Q 010159 37 AQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESD 115 (516)
Q Consensus 37 ~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (516)
.|.+.....+++...+.+++-..++.| +|+++.|.++...++.+.+..+..+|+........++.+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~------------- 68 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK------------- 68 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------------
Confidence 567778889999999999999999999 999999999999999988887777776666665555310
Q ss_pred ccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHh
Q 010159 116 SIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLN 195 (516)
Q Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~ 195 (516)
+++++.+. ..........+.+++... ...+..
T Consensus 69 ----------------------------------------~~~~~~~~---~~~~~~~~~~~~~~i~~~-----~~~~~~ 100 (273)
T PF01943_consen 69 ----------------------------------------DKKELRSA---YFSSVLFLLLIFSLIFLL-----ILLIAS 100 (273)
T ss_pred ----------------------------------------hhHHHHHH---HHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 11122222 233343333333332222 222222
Q ss_pred hccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHHHHHH
Q 010159 196 FMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAH 275 (516)
Q Consensus 196 ~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Gaa~at 275 (516)
.++.++. ...+........+..........++++.++.+.....++...+...++..+++.. +.++.+..++.
T Consensus 101 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 173 (273)
T PF01943_consen 101 FFGNPSL------SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGL 173 (273)
T ss_pred HcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 4432321 1222222222225778888999999999999999999999998888776666653 44588999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHH
Q 010159 276 VISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQVCLQVWLA 354 (516)
Q Consensus 276 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~i~~~i~~~ 354 (516)
.++..+..++...+.+|+.+..+...++...|++++++.|..++++...+....|+.+++.+ |++++|.|+++.++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~ 253 (273)
T PF01943_consen 174 VISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA 253 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999998888888776554333333355689999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 010159 355 TSLLADGLAVAGQAILASS 373 (516)
Q Consensus 355 ~~~~~~~i~~a~~p~vs~~ 373 (516)
...+..++.++..|.+++.
T Consensus 254 ~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 254 ISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=3.3e-18 Score=151.97 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q 010159 315 LLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGL 394 (516)
Q Consensus 315 p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~ 394 (516)
|..++++.....+.+++.+++++|++++++++++.++.++...+..|++++..+.+|+++|++|+|++++..++++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHH-HHHHHHHH
Q 010159 395 VLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFV-AFVSILCL 473 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~-~~~~i~l~ 473 (516)
.+++++.+....+++++.++|++|+++.+.+.+++++..++.++..+.....+++++.||++.+++..+.. +++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999976665 59999998
Q ss_pred HH
Q 010159 474 LG 475 (516)
Q Consensus 474 ~~ 475 (516)
|+
T Consensus 161 yl 162 (162)
T PF01554_consen 161 YL 162 (162)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.72 E-value=6.3e-15 Score=155.59 Aligned_cols=233 Identities=18% Similarity=0.200 Sum_probs=184.6
Q ss_pred cChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 29 LDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 29 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
+++..|++++.+.|..+++....+...+|+.+.+.+|++++++++.+..+.+....+...++..+..|..++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~-------- 289 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSR-------- 289 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345579999999999999999999999999885559999999999998887766544334444555555443
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA 188 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 188 (516)
++|++|+++.++. ..+++.+...++++.++++..
T Consensus 290 -------------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 323 (502)
T TIGR01695 290 -------------------------------------------HASEGNWNELRDL---LNQGIRLSLLLTIPSSFGLLI 323 (502)
T ss_pred -------------------------------------------HHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777766 899999999999999999999
Q ss_pred hhHhHHhhccCCC--CccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhccc
Q 010159 189 GAVPLLNFMGIGS--ESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRL 266 (516)
Q Consensus 189 ~~~~i~~~~~~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~ 266 (516)
+++++..++.+++ ++|..+.+..++.+++++.++..+.......+++.||+|.+++.+....++|++++++++ +.+
T Consensus 324 ~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~--~~~ 401 (502)
T TIGR01695 324 LSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLI--FPL 401 (502)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHH--HHH
Confidence 9999999876533 334678899999999999999999999999999999999999999999999999999887 468
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHhHHHhhHHHHHHH
Q 010159 267 GVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRV 320 (516)
Q Consensus 267 Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~l~~ 320 (516)
|+.|+++++.+++.+..++..++.+|+....+. ....+++.|...+..++.
T Consensus 402 G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~as~~m~ 452 (502)
T TIGR01695 402 GLVGIALATSAASMVSSVLLYLMLNRRLKGILP---FGVLKVLAKLVIASAIIG 452 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCc---hHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777665432111 122445555555444443
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.61 E-value=3.7e-13 Score=139.18 Aligned_cols=210 Identities=22% Similarity=0.271 Sum_probs=180.2
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR 109 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (516)
++..|++++...|.+++....+++.++|+.+.+.+++..+++++.+..+.+....+...++..+..|..++.
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~-------- 265 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRL-------- 265 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345799999999999999999999999999999999999999999999999888777666666555554432
Q ss_pred hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189 (516)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 189 (516)
..+ +|+++.++. +++.+...+.+.++.++.++.+
T Consensus 266 ----------------------~~~---------------------~d~~~~~~~---~~~~l~~~~~i~iP~~~~~~~~ 299 (451)
T PF03023_consen 266 ----------------------AAE---------------------GDWEEFRKT---LRKALRLILLILIPASIGLIVL 299 (451)
T ss_pred ----------------------Hhc---------------------CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 111 555555554 9999999999999999999999
Q ss_pred hHhHHhhcc--CCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccc
Q 010159 190 AVPLLNFMG--IGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLG 267 (516)
Q Consensus 190 ~~~i~~~~~--~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~G 267 (516)
++++.+.+. ++-+.|-.+....++.++.++.|+..+...+...+.+.+|+|.++..++++.++|++++.+++ +.+|
T Consensus 300 a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~--~~~g 377 (451)
T PF03023_consen 300 AEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLV--PFFG 377 (451)
T ss_pred hHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999998653 333444577889999999999999999999999999999999999999999999999998777 6799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010159 268 VSGAAIAHVISQYLIAIILLWKLIQQVD 295 (516)
Q Consensus 268 v~Gaa~at~i~~~~~~l~~~~~~~~~~~ 295 (516)
..|.++++.++..+..++....++|+.+
T Consensus 378 ~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 378 VAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999888877755
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.60 E-value=4.9e-15 Score=131.53 Aligned_cols=161 Identities=24% Similarity=0.464 Sum_probs=143.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhccccccccc
Q 010159 42 PASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGS 121 (516)
Q Consensus 42 p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (516)
|.+++++.+.+...+|..+++++|++++++++++..+.+....+. .++.....+.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~-~g~~~a~~~~~s---------------------- 57 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLI-FGLATALQILIS---------------------- 57 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHH-HHHHHHHHHHHC----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhc-ccccccccceee----------------------
Confidence 899999999999999999999999999999999998888776544 334444443333
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhccCCC
Q 010159 122 ANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGS 201 (516)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~~~~~~~ 201 (516)
|++|++|+++.++. .+.++.+..+++++..++.+.+.+++..+++.++
T Consensus 58 -----------------------------~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 105 (162)
T PF01554_consen 58 -----------------------------QNIGAGDYKRAKKV---VRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDP 105 (162)
T ss_dssp -----------------------------CCCCSSSTTTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTT
T ss_pred -----------------------------cccccccccccccc---cccccccchhcccchhhhhhhHHHHHHHHhhhhH
Confidence 46666999988887 9999999999999999999999999999998777
Q ss_pred CccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHH-HHHHhhhhh
Q 010159 202 ESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGD-LTNIILDPI 259 (516)
Q Consensus 202 ~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~-~i~i~l~~~ 259 (516)
| +.+.+.+|+++..+..++..+.....+++|+.||++.+++.+++.. +++++++|+
T Consensus 106 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 106 E--VIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp C--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 7 8999999999999999999999999999999999999999999999 999998874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.59 E-value=8.3e-14 Score=146.51 Aligned_cols=203 Identities=19% Similarity=0.320 Sum_probs=156.5
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhh------hhhhh----HHHHHHHHHHHHhhcchhhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVE------LAAVG----VSIALFNQVSRIAIFPLVSVTTSFV 98 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~------~aa~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (516)
++..|++++.++|..++++...+.+.+|+.++++ +++.. .+.++ .+.++.+... ....++..+..|..
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998 54322 22222 2222222221 11122233333333
Q ss_pred hchhhhhhhhhhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 010159 99 AEEDAIKSVAREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSIL 178 (516)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~ 178 (516)
++ ..|++|+++.++. .++.+.+..++
T Consensus 300 s~---------------------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~ 325 (488)
T TIGR02900 300 SE---------------------------------------------------AMAKKNYSSIEKR---INQAIKISLLL 325 (488)
T ss_pred HH---------------------------------------------------HHHcCCHHHHHHH---HHHHHHHHHHH
Confidence 32 2333666666665 88999999999
Q ss_pred HHHHHHHHHHhhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhh
Q 010159 179 GLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDP 258 (516)
Q Consensus 179 ~ll~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~ 258 (516)
+++.++.+..+++++...+.++++ +..++.++++..++..+.....+.+++.||+|.+++.+++..++|+++++
T Consensus 326 ~~~~~~~~~~~~~~ii~~~~~~~~------~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~ 399 (488)
T TIGR02900 326 GLITTVILLVIPDELGALFYGRPD------AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLF 399 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764332 57889999999999999999999999999999999999999999999998
Q ss_pred hhHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 259 IFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQQ 293 (516)
Q Consensus 259 ~li~~~~~Gv~Gaa~at~i~~~~~~l~~~~~~~~~ 293 (516)
+++..|.+|+.|+++++.+++.+..++..+..+|.
T Consensus 400 ~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 400 VLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766789999999999999999998888777554
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.56 E-value=6e-12 Score=132.53 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=160.0
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR 109 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (516)
+..|++++++.|.+.+++...++..+|+.++|+ +|++++|.++.+..+.+....+....+..+..|..++.
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~-------- 275 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI-------- 275 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--------
Confidence 456999999999999999999999999999999 89999999999988776544333222223333332210
Q ss_pred hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189 (516)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 189 (516)
.+|+++.++ .+.+.+.+...+++++.+.+...
T Consensus 276 ---------------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~p~~~~l~~~ 307 (492)
T PRK10459 276 ---------------------------------------------QDDTEKLRV---GFLKLLSVLGIINFPLLLGLMVV 307 (492)
T ss_pred ---------------------------------------------cCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 034444444 48888888888999999999999
Q ss_pred hHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchh
Q 010159 190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVS 269 (516)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~ 269 (516)
+|++...+.+++ +..+...+.++++...+..+.+.....+++.||+|.....+++.++++++..+.+. ..+|+.
T Consensus 308 a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~ 381 (492)
T PRK10459 308 SNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLI 381 (492)
T ss_pred hHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHH
Confidence 999998776443 67788999999999999999999999999999999999999988888877666555 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 270 GAAIAHVISQYLIAIILLWKLIQQ 293 (516)
Q Consensus 270 Gaa~at~i~~~~~~l~~~~~~~~~ 293 (516)
|+++++.+++.+..+...++..||
T Consensus 382 g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 382 GVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888887776454
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=1.1e-11 Score=118.07 Aligned_cols=245 Identities=16% Similarity=0.212 Sum_probs=170.7
Q ss_pred HHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhhhhcccccccccCCCCCccccc
Q 010159 53 ASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAREAEESDSIEEGSANGNSEDREL 131 (516)
Q Consensus 53 ~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 131 (516)
.+++-..+++| +|+++.|.++...++......+...++........
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~~~--------------------------------- 49 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVRSA--------------------------------- 49 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------------
Confidence 45666778999 99999999999988887766654443333222100
Q ss_pred CCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhccCCCCccchhhHHH
Q 010159 132 IPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPLLNFMGIGSESPMLSPAQK 211 (516)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (516)
++++++.++. .........+.++ +...+...+..+++. ++ ...
T Consensus 50 -----------------------~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~------~~~ 92 (251)
T PF13440_consen 50 -----------------------ARDKQDIRSL---LRFSLLVSLLLAV----ILAILAILIAYFFGD-PE------LFW 92 (251)
T ss_pred -----------------------ccCHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHhCC-hh------HHH
Confidence 0233333332 3333333333333 232333333334432 22 345
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010159 212 YLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLI 291 (516)
Q Consensus 212 yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Gaa~at~i~~~~~~l~~~~~~~ 291 (516)
++....+..+...+....++.+++++|.+...............+..++.. .+.+..+..++..++..+..+......+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 93 LLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777778888999999999999999999999999998888544444443 2348888889888888887766655333
Q ss_pred HhccCCCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHH
Q 010159 292 QQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAAR-QGPTSMAAFQVCLQVWLATS-LLADGLAVAGQAI 369 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~-~g~~~va~~~i~~~i~~~~~-~~~~~i~~a~~p~ 369 (516)
++ ...++ +.. .+|.++.+.|..+.++........|..+++. +|++++|.|+++.++.+.+. ++..++++...|.
T Consensus 172 ~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~ 247 (251)
T PF13440_consen 172 RK-LRLSF--KFS-WRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPK 247 (251)
T ss_pred cc-cCCCc--hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 222 3348999999999999999999999999999 69999999999999999888 9999999999999
Q ss_pred HHH
Q 010159 370 LAS 372 (516)
Q Consensus 370 vs~ 372 (516)
++|
T Consensus 248 lar 250 (251)
T PF13440_consen 248 LAR 250 (251)
T ss_pred HhC
Confidence 886
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.53 E-value=2.3e-11 Score=124.40 Aligned_cols=235 Identities=20% Similarity=0.202 Sum_probs=184.2
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVARE 110 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (516)
+..|++.+...|..++..++++..++|+.+.+.+.+...+.+..+..+++....+....+..+.-|-.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~--------- 299 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRH--------- 299 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------
Confidence 45699999999999999999999999999999998999999999999998887776554444444444331
Q ss_pred hhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010159 111 AEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGA 190 (516)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 190 (516)
.. .+|.++.++ ...+++.+++++.++.++.+..++
T Consensus 300 ---------------------~~---------------------~~~~~~~~~---~l~~~i~l~lll~lP~~~~l~~la 334 (518)
T COG0728 300 ---------------------AA---------------------NGDWPEFLK---LLDWGLRLTLLLTLPASAGLLVLA 334 (518)
T ss_pred ---------------------hh---------------------cCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 144444444 499999999999999999999999
Q ss_pred HhHHhhccC--CCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccch
Q 010159 191 VPLLNFMGI--GSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGV 268 (516)
Q Consensus 191 ~~i~~~~~~--~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv 268 (516)
+|+.+.+.. .-+++........++.+..+.++..+..++...+.+++|+|.|+++.+++.++|+++|+.+. +.+|.
T Consensus 335 ~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~ 412 (518)
T COG0728 335 EPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGH 412 (518)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccc
Confidence 999987532 22223466778889999999999999999999999999999999999999999999996666 56888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHhHHHhhHHHHHHHHHH
Q 010159 269 SGAAIAHVISQYLIAIILLWKLIQQVDLIPPSMKRLKFGRFLQNGFLLLIRVMAV 323 (516)
Q Consensus 269 ~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~l~~~~~ 323 (516)
.|.+.++.++.++++.+.++.++|+....+ ...+.... +.|..+-..+.....
T Consensus 413 ~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~~~~~~-~~k~~l~~~i~~~~~ 465 (518)
T COG0728 413 VGLALATSLAAWVNALLLYYLLRKRLVYLP-GRGWGLFL-ILKLLLASAIMAAAL 465 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999888888777655333 33333234 555555555544333
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.51 E-value=1.5e-12 Score=134.00 Aligned_cols=202 Identities=8% Similarity=-0.040 Sum_probs=163.3
Q ss_pred cChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhh
Q 010159 29 LDELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSV 107 (516)
Q Consensus 29 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (516)
+++..|++++++.|..++++...+...+|+.++++ +|++++|.++.+..+.+........++..+..|..++.
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~------ 283 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL------ 283 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 45568999999999999999999999999999985 99999999999999877554444456666667666531
Q ss_pred hhhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010159 108 AREAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLI 187 (516)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 187 (516)
+|+++.++. .+........++++.+++.+
T Consensus 284 ------------------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 312 (416)
T PRK15099 284 ------------------------------------------------TEKRDITRE---IVKALKFVLPAVAAASFTVW 312 (416)
T ss_pred ------------------------------------------------CChHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344444443 77788888888888888888
Q ss_pred HhhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccc
Q 010159 188 AGAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLG 267 (516)
Q Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~G 267 (516)
+++|++..++.+++ ++.+.++..++.++..+...+......+-..++++......+...+++++++++++ +.+|
T Consensus 313 l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li--~~~G 386 (416)
T PRK15099 313 LLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLI--PLHG 386 (416)
T ss_pred HHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 99999999887654 45578899998888888877777766667778888888888888889999999988 5699
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 268 VSGAAIAHVISQYLIAIILLWKLIQQ 293 (516)
Q Consensus 268 v~Gaa~at~i~~~~~~l~~~~~~~~~ 293 (516)
..|+++++.+++.+..++..+...++
T Consensus 387 ~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 387 ALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877655443
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.39 E-value=7.4e-11 Score=123.89 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=154.3
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
.+..|++++.++|..++.....+.+.+|+.++++ +|++++|.++.+..+......+. .++..+..|..++.+
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~-~~l~~~l~P~~s~~~------ 281 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVA-SALNRVLFPALSRAY------ 281 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 4678999999999999999999999999999999 99999999996666655554443 455566666655432
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA 188 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 188 (516)
++++.++.++...+++.+....+++..+....
T Consensus 282 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~ 313 (480)
T COG2244 282 ------------------------------------------------AEGDRKALKKLLRQSLKLLLLISIPALLGLLL 313 (480)
T ss_pred ------------------------------------------------HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222322334888999999999999999999
Q ss_pred hhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccch
Q 010159 189 GAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGV 268 (516)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv 268 (516)
+++++...+.+++ ...+...+.++.+..++..+.......+++.||++..+..+.++.++|++++++++ +.+|.
T Consensus 314 ~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~ 387 (480)
T COG2244 314 LAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGL 387 (480)
T ss_pred HHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--Hhhhh
Confidence 9999998776554 33488899999999999999999999999999999999999999999999999998 67899
Q ss_pred hHHHHHHHHH
Q 010159 269 SGAAIAHVIS 278 (516)
Q Consensus 269 ~Gaa~at~i~ 278 (516)
.|++.++ .+
T Consensus 388 ~g~~~a~-~~ 396 (480)
T COG2244 388 IGAAIAT-AS 396 (480)
T ss_pred hhHHHHH-HH
Confidence 9999999 44
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.18 E-value=1.8e-09 Score=111.23 Aligned_cols=201 Identities=15% Similarity=0.062 Sum_probs=182.8
Q ss_pred hhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhhhcHHHH
Q 010159 304 LKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLAT-SLLADGLAVAGQAILASSFAKKDYERA 382 (516)
Q Consensus 304 ~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~-~~~~~~i~~a~~p~vs~~~g~~~~~~~ 382 (516)
.+.|++.+++.|..+..........++..+.+|+|+.++++.+++.+..+.. +-+..++..+..|.++|.+|.++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 4578999999999999999999999999999999999999999999988875 667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHH
Q 010159 383 TSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSM 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~ 462 (516)
....+++.......+.|.... +.+.+++...+.+||++...+..+.++..+..+.+.....+...+|+.+++....+..
T Consensus 105 g~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 999999988888888887665 4556999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 463 VFVAFVSILCLLGLSA--TNGFVGLWIGLTIYMSLRAFAGFWRIG 505 (516)
Q Consensus 463 ~~~~~~~i~l~~~l~~--~~G~~G~~~a~~i~~~i~~~~~~~~~~ 505 (516)
....++.+++++++.+ .+|..|+.++..+++.+......+...
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999986 578999999999999887776655554
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=3.1e-07 Score=89.99 Aligned_cols=299 Identities=12% Similarity=0.041 Sum_probs=193.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhh-hHhh-cccchhHHHHHHHHHHHHHHHHHHH
Q 010159 211 KYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPI-FIFV-FRLGVSGAAIAHVISQYLIAIILLW 288 (516)
Q Consensus 211 ~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~-li~~-~~~Gv~Gaa~at~i~~~~~~l~~~~ 288 (516)
.-..+...+...-.+...+.-..|..-+.+.-.+......++.-+.++. ++.+ ..+++..-|+|.......-.+...+
T Consensus 124 ~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~ 203 (530)
T KOG2864|consen 124 FAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYW 203 (530)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444455555555556666677677777777777777766333332 3323 3455666666665554433332233
Q ss_pred HHHHhccCC---Cc--hhhh-------h-----hHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh---ChHHHHHHHHH
Q 010159 289 KLIQQVDLI---PP--SMKR-------L-----KFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ---GPTSMAAFQVC 348 (516)
Q Consensus 289 ~~~~~~~~~---~~--~~~~-------~-----~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~---g~~~va~~~i~ 348 (516)
++.+.++.. ++ +..+ . .=++..|.-.....+...-.+...-+.++++.. .-++-|.|.+.
T Consensus 204 ~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v 283 (530)
T KOG2864|consen 204 FYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLV 283 (530)
T ss_pred HHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHH
Confidence 333322200 00 0000 0 013455555555666666666666555555533 45688899999
Q ss_pred HHHHHHHH-HHHHHHHHHhHHHHHHHhhhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHH
Q 010159 349 LQVWLATS-LLADGLAVAGQAILASSFAKKDYERATSSAA---RVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRL 424 (516)
Q Consensus 349 ~~i~~~~~-~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~ 424 (516)
++..++.. ++...+-.......++...+++.|+.++... ..++....++......-...++.+..++.+++.....
T Consensus 284 ~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~ 363 (530)
T KOG2864|consen 284 SNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGG 363 (530)
T ss_pred HhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCC
Confidence 99888774 5667788888888999888887777776654 3344444444444444445566777777765433334
Q ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHH---HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 010159 425 IGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACS---MVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGF 501 (516)
Q Consensus 425 ~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~---~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~ 501 (516)
....++++++..++.+++.+..+...+.++.+..... .....++.+..++++..++|..|..+|..+...++.+...
T Consensus 364 ~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~ 443 (530)
T KOG2864|consen 364 GSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSL 443 (530)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999888877762 4555677889999999999999999999999999988777
Q ss_pred HHHhcCCC
Q 010159 502 WRIGTGTG 509 (516)
Q Consensus 502 ~~~~~~~~ 509 (516)
..+++.++
T Consensus 444 ~fI~~~yr 451 (530)
T KOG2864|consen 444 RFIRHYYR 451 (530)
T ss_pred HHHHHHhc
Confidence 77665443
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.03 E-value=4.6e-07 Score=94.89 Aligned_cols=203 Identities=13% Similarity=0.068 Sum_probs=160.3
Q ss_pred HhHHHhhHHHHHHHHHHHHHHHHHHHHHhh--h-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhhhcH---
Q 010159 307 GRFLQNGFLLLIRVMAVTFCVTLSASLAAR--Q-GPTSMAAFQVCLQVWLATS-LLADGLAVAGQAILASSFAKKDY--- 379 (516)
Q Consensus 307 ~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~--~-g~~~va~~~i~~~i~~~~~-~~~~~i~~a~~p~vs~~~g~~~~--- 379 (516)
++.++.....+.+++.-.+...-|.+++.. + ..++-|.|+++++..++.. ++...+-.+.....++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678888999999999999999999999888 5 7899999999999988874 44556777777788877654422
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcC
Q 010159 380 ------ERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGAS 453 (516)
Q Consensus 380 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g 453 (516)
++..+.....+++...+++.+..+....++.+.+++.+++.....+...+++++...++.+++.+.....++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 44556666777777777777777777777777788765443333468899999999999999999999999998
Q ss_pred hhhHHHHH---HHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010159 454 DYAYAACS---MVFVAFVSILCLLGLSA-TNGFVGLWIGLTIYMSLRAFAGFWRIGTGTG 509 (516)
Q Consensus 454 ~~~~~~~~---~~~~~~~~i~l~~~l~~-~~G~~G~~~a~~i~~~i~~~~~~~~~~~~~~ 509 (516)
+.+..... .....++.+..++++.. .+|..|..+|..+...++.....+.+++..+
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87776662 34445666778888888 5999999999999999999988887776433
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.58 E-value=6.7e-06 Score=71.26 Aligned_cols=81 Identities=33% Similarity=0.509 Sum_probs=75.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 213 LTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKLIQ 292 (516)
Q Consensus 213 l~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Gaa~at~i~~~~~~l~~~~~~~~ 292 (516)
+.+++++.++..+.......+++.||+|..+..++++.++|++++++++ |.+|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999999999999997 68999999999999999999988888877
Q ss_pred hcc
Q 010159 293 QVD 295 (516)
Q Consensus 293 ~~~ 295 (516)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 654
No 38
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.43 E-value=0.00025 Score=67.25 Aligned_cols=256 Identities=13% Similarity=0.165 Sum_probs=147.6
Q ss_pred HHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccC---hhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 32 LGLEIAQIALPASLALTADPIASLIDTAFIGQIG---SVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 32 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g---~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
...++.++-.|..++.++..+..-+-..-++|-. .+.+|+++++..+.-.+.... .....+...++-
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~-~~~~~igl~~V~--------- 78 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPL-SMFHHIGLVFVN--------- 78 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChh-hhhHHHHHHHhc---------
Confidence 3588999999999999998888777777776632 245899999977765443222 111111221111
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH-HH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIV-LI 187 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~ 187 (516)
.++++.+. +............+...+ .-
T Consensus 79 -----------------------------------------------s~rsrr~~----vl~~~vag~v~avi~~LIa~T 107 (345)
T PF07260_consen 79 -----------------------------------------------SKRSRRKA----VLCMAVAGAVAAVIHLLIAWT 107 (345)
T ss_pred -----------------------------------------------chhhhHHH----HHHHHHHHHHHHHHHHHHHhC
Confidence 22222222 222222222222221121 22
Q ss_pred HhhHhHH-hhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhc--
Q 010159 188 AGAVPLL-NFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVF-- 264 (516)
Q Consensus 188 ~~~~~i~-~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~-- 264 (516)
.+...++ +.++.+++ +.+.+...+.++.+.-++..+....+|++-=.+++......++......+++...++...
T Consensus 108 pLG~~li~~lhgVs~~--va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~ 185 (345)
T PF07260_consen 108 PLGNYLINDLHGVSPS--VAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLE 185 (345)
T ss_pred chHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccC
Confidence 2233343 45676666 888999999999999999999999999888777777777777766666666555555321
Q ss_pred -----ccchhHHHHHHHHHHHHHHHHHHH-HHHHhccCC-Cc-hhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 010159 265 -----RLGVSGAAIAHVISQYLIAIILLW-KLIQQVDLI-PP-SMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAAR 336 (516)
Q Consensus 265 -----~~Gv~Gaa~at~i~~~~~~l~~~~-~~~~~~~~~-~~-~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~ 336 (516)
-.++.|.-.+ ...+.-..++.++ -.+.+.+.. .. +-++..+++++++..|.+........+--+.+.++++
T Consensus 186 ~~~pllipil~~y~g-~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR 264 (345)
T PF07260_consen 186 PQDPLLIPILALYAG-IAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSR 264 (345)
T ss_pred ccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122222111 1111111111111 111111111 11 1223468999999999999999989988888888888
Q ss_pred -h-C----hHHHHHHHHHHHH
Q 010159 337 -Q-G----PTSMAAFQVCLQV 351 (516)
Q Consensus 337 -~-g----~~~va~~~i~~~i 351 (516)
+ | +++++...+...+
T Consensus 265 ~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 265 DLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred ccCCcccchhhhhhhccccCC
Confidence 4 3 3566665554443
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.39 E-value=1.7e-06 Score=75.02 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=77.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010159 428 GIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWRIGTG 507 (516)
Q Consensus 428 ~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~~~~~~ 507 (516)
++++++++.++.++......++++.||+|..++..+...+++++++++++|.+|..|+.+++.+++.+...+..+..+|+
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999998888875
Q ss_pred CC
Q 010159 508 TG 509 (516)
Q Consensus 508 ~~ 509 (516)
.+
T Consensus 81 ~~ 82 (146)
T PF14667_consen 81 IG 82 (146)
T ss_pred hC
Confidence 54
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.34 E-value=0.0003 Score=67.41 Aligned_cols=186 Identities=22% Similarity=0.281 Sum_probs=117.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhhhhcHHHHHHHHH
Q 010159 310 LQNGFLLLIRVMAVTFCVTLSASLAARQ-GPTSMAAFQVCLQVWLATSLL-ADGLAVAGQAILASSFAKKDYERATSSAA 387 (516)
Q Consensus 310 ~~~~~p~~l~~~~~~~~~~~~~~~i~~~-g~~~va~~~i~~~i~~~~~~~-~~~i~~a~~p~vs~~~g~~~~~~~~~~~~ 387 (516)
.|.+......+....+...+...++.+. |+++.|.|+....+.++...+ -.|+.++..-.+++...+ .+..++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4556666677777766666666666655 999999999999999888765 667888877777765433 233333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Q 010159 388 RVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAF 467 (516)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~ 467 (516)
......+.. .. +......+...+. +++.. ..+........++.........++++.++.+......+...+
T Consensus 80 ~~~~~~~~~-~~----i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIF-SL----IFLLILLIASFFG-NPSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHH-HH----HHHHHHHHHHHcC-CchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 22 2222222222333 33321 222222222225788888899999999999988887777777
Q ss_pred HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 468 VSILCLLGLSAT-NGFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 468 ~~i~l~~~l~~~-~G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
..+.+.+++... .+..+...+..++.++...+..+..+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555543 348888899999998887777776664
No 41
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.19 E-value=9.5e-05 Score=77.70 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=166.8
Q ss_pred HHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc---cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 32 LGLEIAQIALPASLALTADPIASLIDTAFIGQ---IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 32 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~---~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
+-+++++++.....+.+...+.+--|..++.. ...++.|.|+++.++...+.++...|+....-.+.++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~------- 323 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL------- 323 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH-------
Confidence 35899999999999999999999999999998 46789999999999999999999888888776665542
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA 188 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 188 (516)
+.+++ ....+++++.++..+.+...+.+...+++++..+...
T Consensus 324 -----------------------l~~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~ 365 (549)
T PF04506_consen 324 -----------------------LSRDN---------------SKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPP 365 (549)
T ss_pred -----------------------hcccC---------------chhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 11100 0000233445566566788888888888888888888
Q ss_pred hhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhH---HHHHHHHHHHHhhhhhhHhhcc
Q 010159 189 GAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPL---YATVAGDLTNIILDPIFIFVFR 265 (516)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~---~~~ii~~~i~i~l~~~li~~~~ 265 (516)
.++.++.+++++.= ....+...+++.+..+|+.+++++.-.+.++.-..+... ..+.+..++.+..+++++.. +
T Consensus 366 ~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~ 442 (549)
T PF04506_consen 366 YSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-G 442 (549)
T ss_pred hHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 88888888765542 234468889999999999999999999998887765544 44455566677788888865 7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010159 266 LGVSGAAIAHVISQYLIAIILLWKLIQQVD 295 (516)
Q Consensus 266 ~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~ 295 (516)
+|..|..+|..+...+-.+....+.++..+
T Consensus 443 ~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 443 LGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888766544
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.08 E-value=0.0017 Score=61.43 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=106.2
Q ss_pred HHHHHHhhh-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 329 LSASLAARQ-GPTSMAAFQVCLQVWLATSLL-ADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGV 406 (516)
Q Consensus 329 ~~~~~i~~~-g~~~va~~~i~~~i~~~~~~~-~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
+...++++. |+++.|.|+....+..+...+ ..|+.+...- ..++|.++.++..+.......+..+...++
T Consensus 6 ~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (251)
T PF13440_consen 6 LFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL--- 77 (251)
T ss_pred HHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 334445554 999999999999998887765 4455554322 234556666666555554444444333332
Q ss_pred hHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHh-hccchHHH
Q 010159 407 ALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLS-ATNGFVGL 485 (516)
Q Consensus 407 ~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~-~~~G~~G~ 485 (516)
...+...+ ++++ ...++....+..++..........+++.+|.+..........+..+.+...+. ...+..+.
T Consensus 78 -~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (251)
T PF13440_consen 78 -AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSI 151 (251)
T ss_pred -HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333344 3443 24566677778888899999999999999999988877666665533333322 23478888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 010159 486 WIGLTIYMSLRAFAGFWRIGTG 507 (516)
Q Consensus 486 ~~a~~i~~~i~~~~~~~~~~~~ 507 (516)
.++..++.++..+......+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ 173 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLRRK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 8898898888777665555443
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0016 Score=64.54 Aligned_cols=213 Identities=12% Similarity=0.073 Sum_probs=160.7
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc---cChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhhh
Q 010159 33 GLEIAQIALPASLALTADPIASLIDTAFIGQ---IGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVAR 109 (516)
Q Consensus 33 ~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~---~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (516)
-++..+......-+.+...+.+--|.+++.- +.-++.|.+.+..++...+.++..-|+..-...+.++.
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~-------- 309 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARL-------- 309 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHH--------
Confidence 4677777788888888888888889988873 45567788888888888888887777776666665542
Q ss_pred hhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 110 EAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAG 189 (516)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~ 189 (516)
+.+ +++||.++...+..+.+.+...++++++.+....
T Consensus 310 ----------------------ls~---------------------~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~Y 346 (530)
T KOG2864|consen 310 ----------------------LSR---------------------DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAY 346 (530)
T ss_pred ----------------------hhc---------------------cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 222 5677777777778888888888888888878788
Q ss_pred hHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhH---HHHHHHHHHHHhhhhhhHhhccc
Q 010159 190 AVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPL---YATVAGDLTNIILDPIFIFVFRL 266 (516)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~---~~~ii~~~i~i~l~~~li~~~~~ 266 (516)
++.++.+.+++.= ....+...+++.+..+|+..++.+.-++..+....+..- ....+...+.++.+++++.. +
T Consensus 347 S~~vL~lygG~kw--ss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~ 422 (530)
T KOG2864|consen 347 SYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--F 422 (530)
T ss_pred cHHHHHHHcCccc--cCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--h
Confidence 8888888887652 234466889999999999999999999988876654433 33455566677889999865 6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 010159 267 GVSGAAIAHVISQYLIAIILLWKLIQQVDLIPPS 300 (516)
Q Consensus 267 Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~~~ 300 (516)
|..|..+|..+...+-.+....++++..+....+
T Consensus 423 ~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ld 456 (530)
T KOG2864|consen 423 GLVGLILANIINMSLRILYSLRFIRHYYRDLSLD 456 (530)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 6689989888888888777777776665544333
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.96 E-value=0.021 Score=55.45 Aligned_cols=278 Identities=9% Similarity=0.008 Sum_probs=172.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 010159 211 KYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFVFRLGVSGAAIAHVISQYLIAIILLWKL 290 (516)
Q Consensus 211 ~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~~~~Gv~Gaa~at~i~~~~~~l~~~~~~ 290 (516)
.|=...+..+...+.......++.+.+|.|...+...++..+.+.+..++- +.+..|..++..++..+.......+.
T Consensus 132 ~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~I 208 (467)
T COG4267 132 VYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYI 208 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 343444555677778888899999999999999999999999988887775 46889999999999988877776666
Q ss_pred HHhcc-CCCchhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhC--hHHH------HHHHHHHHHHHHHHHHHHH
Q 010159 291 IQQVD-LIPPSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQG--PTSM------AAFQVCLQVWLATSLLADG 361 (516)
Q Consensus 291 ~~~~~-~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g--~~~v------a~~~i~~~i~~~~~~~~~~ 361 (516)
.|..+ +.+..++-... .+--...++-....+++-++++.+.-.-+ .+.. .-|.+..-...+...|..+
T Consensus 209 lr~fk~~~~i~FdFL~~---~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~v 285 (467)
T COG4267 209 LRYFKSSRRIGFDFLLY---RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMV 285 (467)
T ss_pred HHhcccccccceehhhh---hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhh
Confidence 55422 22223332211 22222335556677777777776653222 1111 1233333333333333222
Q ss_pred -HHHHhHHHHHHHhh---------------hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHH
Q 010159 362 -LAVAGQAILASSFA---------------KKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLI 425 (516)
Q Consensus 362 -i~~a~~p~vs~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~ 425 (516)
+.....+..-+++. +++.+++....++...-..-+-...++.+.++++.+...+.-|+ .-
T Consensus 286 vF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~ 361 (467)
T COG4267 286 VFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YY 361 (467)
T ss_pred eeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HH
Confidence 22222222222221 13344555566666666677777888899999999988887554 34
Q ss_pred HhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHHHHHHH
Q 010159 426 GIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLS---ATNGFVGLWIGLTIYMSLRAF 498 (516)
Q Consensus 426 ~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~---~~~G~~G~~~a~~i~~~i~~~ 498 (516)
.+.+++-.++.........+-.+..-.++.+..+..+..-.+.|-.+.++.. |.+--.|...|..+...+...
T Consensus 362 l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~ 437 (467)
T COG4267 362 LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK 437 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence 5677777777666666666666666777777777766666666777766654 445455666666655554433
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.51 E-value=0.051 Score=51.94 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=112.9
Q ss_pred hHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHH
Q 010159 305 KFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ--GP-TSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYER 381 (516)
Q Consensus 305 ~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~--g~-~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~ 381 (516)
..+++.++-+|..+++....+.-.+.+.-+++- .+ +.+|+|+++..+.-++.-+...+-+....++. ++.+
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~rs- 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKRS- 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chhh-
Confidence 478999999999999999999988888888763 33 55999999999998888887777776555553 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhHHH-hHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChh
Q 010159 382 ATSSAARVLQLGLVLGLVLGAILG-----VALQY-GAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDY 455 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~ 455 (516)
-++. +....+.+.....+.. -+.+. +-+++.-||++.+.+...+.++.+..+++++....++++.=.+++
T Consensus 83 rr~~----vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 83 RRKA----VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 2222 2222222222222212 22222 246677789999999999999999999999999999988855666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 010159 456 AYAACSMVFVAFVSILCLLGLS 477 (516)
Q Consensus 456 ~~~~~~~~~~~~~~i~l~~~l~ 477 (516)
......++...+..+.+..++.
T Consensus 159 ~iV~~aSI~~v~~qvV~v~~ll 180 (345)
T PF07260_consen 159 WIVGSASIADVIAQVVLVAILL 180 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHH
Confidence 6655666665555555444444
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=90.67 E-value=19 Score=35.76 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHH
Q 010159 345 FQVCLQVWLATSLL-ADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVR 423 (516)
Q Consensus 345 ~~i~~~i~~~~~~~-~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~ 423 (516)
+-....-+.+..++ ..+++...+-.+|+..=++|+++....+.-+..+....+..++.. -.+.+++.
T Consensus 62 Flssv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~---------vf~~~~~~--- 129 (467)
T COG4267 62 FLSSVTYCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI---------VFFVNNQY--- 129 (467)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH---------hhhhcCch---
Confidence 33333334444444 445777777778888888888888887766665555555444421 12223331
Q ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010159 424 LIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLRAFAGFWR 503 (516)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~~~~~~~~ 503 (516)
...+=...+...+..+..++....+.+.+|.+...++...+..+.+.+..++- ..++.|.-++..++..+...+....
T Consensus 130 -si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~-~~~ie~lLL~~~IGi~~i~~l~~~~ 207 (467)
T COG4267 130 -SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL-KSPIEGLLLTLDIGIFIILFLLNFY 207 (467)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12222334445567777888889999999999999998888888887776654 4599999999999997776665555
Q ss_pred Hhc
Q 010159 504 IGT 506 (516)
Q Consensus 504 ~~~ 506 (516)
+.|
T Consensus 208 Ilr 210 (467)
T COG4267 208 ILR 210 (467)
T ss_pred HHH
Confidence 544
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=52.85 E-value=83 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHH
Q 010159 362 LAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGL 398 (516)
Q Consensus 362 i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
++......+-..+.+||++++++.-+++.+++.+-.+
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 4445556777788899999999999888877755433
No 48
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=52.23 E-value=2e+02 Score=26.78 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=34.8
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVG 73 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~ 73 (516)
+..+.+-+...|+.++.....+.+++....+++ +|-++--..+
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~S 127 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMAS 127 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 446778888899999999999999999999999 8866543333
No 49
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=47.67 E-value=2.3e+02 Score=26.20 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=35.6
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVG 73 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~ 73 (516)
.+.++.+-|...|++.+.+......++....+++ +|-++--..+
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S 124 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS 124 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3456788888999999999999999999999999 8866543333
No 50
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=42.52 E-value=2.8e+02 Score=25.58 Aligned_cols=44 Identities=7% Similarity=0.145 Sum_probs=35.3
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVG 73 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~ 73 (516)
.+.++.+.+...|...+.....+..+.....+++ +|-++--..+
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~S 111 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILS 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3456888889999999999999999999999999 8765533333
No 51
>PRK10711 hypothetical protein; Provisional
Probab=41.47 E-value=3e+02 Score=25.67 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=33.4
Q ss_pred hHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhh
Q 010159 31 ELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAV 72 (516)
Q Consensus 31 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~ 72 (516)
+..+.+-+...|+.++.....+.+++....+++ +|-++--..
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~ 121 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAA 121 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 445777788889999999999999999999999 876554333
No 52
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=39.98 E-value=3.1e+02 Score=25.45 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=34.5
Q ss_pred ChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhc-cChhhhhhhh
Q 010159 30 DELGLEIAQIALPASLALTADPIASLIDTAFIGQ-IGSVELAAVG 73 (516)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-~g~~~~aa~~ 73 (516)
.+..+.+-+...|+.++.....+.++.....+++ +|-++--..+
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~S 121 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIAS 121 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3446778888899999999999999999999999 8765433333
No 53
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.48 E-value=46 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc
Q 010159 488 GLTIYMSLRAFAGFWRIGTGTGPWAFL 514 (516)
Q Consensus 488 a~~i~~~i~~~~~~~~~~~~~~~w~~l 514 (516)
..++-.++..+++.|.+|||...|++.
T Consensus 267 vllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Confidence 334444566677888888888899874
No 54
>PTZ00370 STEVOR; Provisional
Probab=32.42 E-value=47 Score=31.67 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc
Q 010159 488 GLTIYMSLRAFAGFWRIGTGTGPWAFL 514 (516)
Q Consensus 488 a~~i~~~i~~~~~~~~~~~~~~~w~~l 514 (516)
..++-.++..+++.|.+|||...|++.
T Consensus 263 vllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 334444566677888888888899863
No 55
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=29.12 E-value=1.2e+02 Score=26.09 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=25.3
Q ss_pred cccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010159 138 TEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIV 185 (516)
Q Consensus 138 ~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 185 (516)
-|.|+|+.+= ++.. ...++.+..+|.+...+.++.+++++..+.
T Consensus 6 f~~dse~~~n--~~y~--as~~r~k~~~R~i~l~~Ri~~~iSIisL~~ 49 (161)
T PHA02673 6 FDNDSEAANN--ANYV--ASVKRQKAIRRYIKLFFRLMAAIAIIVLAI 49 (161)
T ss_pred ccCchhhccC--cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777554 2333 233444555556777777777777654433
No 56
>PF13347 MFS_2: MFS/sugar transport protein
Probab=28.79 E-value=6.3e+02 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhChH
Q 010159 317 LIRVMAVTFCVTLSASLAARQGPT 340 (516)
Q Consensus 317 ~l~~~~~~~~~~~~~~~i~~~g~~ 340 (516)
....+...+...+...++..+|..
T Consensus 147 ~~~~~g~~l~~~~~~~l~~~~g~~ 170 (428)
T PF13347_consen 147 IFSMIGSLLASFLAPILVSWFGGG 170 (428)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccC
Confidence 334443334445555555555443
No 57
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=22.02 E-value=8.3e+02 Score=24.67 Aligned_cols=170 Identities=16% Similarity=0.069 Sum_probs=80.0
Q ss_pred hhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-H
Q 010159 304 LKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQG---PTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKD-Y 379 (516)
Q Consensus 304 ~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g---~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~-~ 379 (516)
..+..++.+++|.++..+..+-...+-..-...+. ...+..-++++-+...+.-....++--+..++. |++- .
T Consensus 203 Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~---g~eah~ 279 (378)
T PF03594_consen 203 FSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICA---GPEAHP 279 (378)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHc---CCccCC
Confidence 34678999999999887766544433322222231 122333333333333222222222222222222 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHH
Q 010159 380 ERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAA 459 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~ 459 (516)
|.-||+ ..-+.+....+++-+++..++.+|..-|.. +...++=-..+..+...+.+.+. .++.|.+.
T Consensus 280 dp~rRy------~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~------li~~lAGLALlg~l~~sl~~A~~-~~~~r~aA 346 (378)
T PF03594_consen 280 DPSRRY------IAAVAAGVFYLLFGLFAAALVALFAALPPA------LIAALAGLALLGTLGGSLQTAFS-DEKYREAA 346 (378)
T ss_pred Ccccch------HHHHHHhHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHhc-CcchhHHH
Confidence 233332 233344445566777888888888654421 11122212223444444444443 23445554
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010159 460 CSMVFVAFVSILCLLGLSATNGFVGLWIGLTIYMSLR 496 (516)
Q Consensus 460 ~~~~~~~~~~i~l~~~l~~~~G~~G~~~a~~i~~~i~ 496 (516)
..+.....-+ +..+|+-...|+...+..+.
T Consensus 347 lvtFlvtaSG-------isl~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 347 LVTFLVTASG-------ISLLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred HHHHHHHHcC-------CCcccccHHHHHHHHHHHHH
Confidence 4333322222 24568888888888776654
Done!