Query 010159
Match_columns 516
No_of_seqs 212 out of 1871
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.5E-45 5E-50 382.9 40.6 422 29-508 7-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.2E-17 4.2E-22 172.5 19.5 203 303-506 8-216 (460)
3 1pw4_A Glycerol-3-phosphate tr 50.7 1.8E+02 0.006 27.9 24.9 27 477-503 407-433 (451)
4 2k1k_A Ephrin type-A receptor 21.4 1.4E+02 0.0049 18.0 3.9 25 482-506 13-37 (38)
5 4hkr_A Calcium release-activat 16.6 5.1E+02 0.018 22.3 13.4 96 338-434 56-160 (214)
6 4ev6_A Magnesium transport pro 13.4 2.8E+02 0.0095 26.0 6.0 55 454-511 274-338 (339)
7 1nkz_B Light-harvesting protei 9.2 3.8E+02 0.013 16.6 3.9 35 158-192 5-39 (41)
8 2jwa_A Receptor tyrosine-prote 9.1 4E+02 0.014 16.7 4.5 10 284-293 29-38 (44)
9 1dx7_A Light-harvesting protei 8.4 1.3E+02 0.0045 19.3 1.1 48 140-193 1-48 (48)
10 1lgh_B LH II, B800/850, light 8.1 4.5E+02 0.015 16.6 3.5 36 158-193 10-45 (45)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.5e-45 Score=382.85 Aligned_cols=422 Identities=20% Similarity=0.217 Sum_probs=373.7
Q ss_pred cChHHHHHHHhHhHHHHHHhHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHHHHhhcchhhhhhhhhhchhhhhhhh
Q 010159 29 LDELGLEIAQIALPASLALTADPIASLIDTAFIGQIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDAIKSVA 108 (516)
Q Consensus 29 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~~g~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (516)
.++..|++++.++|.+++++.+.+++.+|+.+++++|++++|+++++.++.+....+. .++.....+.+
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~-~g~~~~~~~~i---------- 75 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-VGLLMALVPVV---------- 75 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH-HHHHHHHGGGC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----------
Confidence 3456799999999999999999999999999999999999999999988866544433 33333333333
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCCcccccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 109 REAEESDSIEEGSANGNSEDRELIPRSDSTEADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIA 188 (516)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 188 (516)
+| ++|++|+++.++. +.+++.+.++.+++.+++ +.
T Consensus 76 --------------------s~---------------------~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 110 (460)
T 3mkt_A 76 --------------------AQ---------------------LNGAGRQHKIPFE---VHQGLILALLVSVPIIAV-LF 110 (460)
T ss_dssp --------------------TT---------------------TTSSSSTTTHHHH---HHHHHHHHHHHHHHHHHH-HH
T ss_pred --------------------HH---------------------HHcCCChhHHHHH---HHHHHHHHHHHHHHHHHH-HH
Confidence 23 4444777777776 889999999998887665 78
Q ss_pred hhHhHHhhccCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhhhhhHhh----c
Q 010159 189 GAVPLLNFMGIGSESPMLSPAQKYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIILDPIFIFV----F 264 (516)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ii~~~i~i~l~~~li~~----~ 264 (516)
+.+++..+++.+++ ..+.+..|++++.++.++..+.....+++|+.||++.+++.++++.++|+++++++++. |
T Consensus 111 ~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p 188 (460)
T 3mkt_A 111 QTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188 (460)
T ss_dssp HHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCC
T ss_pred hHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 88999998876665 78899999999999999999999999999999999999999999999999999999975 4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------chhhhhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010159 265 RLGVSGAAIAHVISQYLIAIILLWKLIQQVDLIP-------PSMKRLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQ 337 (516)
Q Consensus 265 ~~Gv~Gaa~at~i~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~ 337 (516)
++|+.|+++++.+++.+..++..++++++++..+ .+.++..+|++++++.|.+++.+...+.+.+++.+++++
T Consensus 189 ~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 268 (460)
T 3mkt_A 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL 268 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999988888766543221 133445689999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCC
Q 010159 338 GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERATSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTR 417 (516)
Q Consensus 338 g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 417 (516)
|++++++|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.+++..+++++++++.++++++.++|++
T Consensus 269 g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 348 (460)
T 3mkt_A 269 GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE 348 (460)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHHHHH-HHHHHHHHHHHhhc-------cchHHHHHHH
Q 010159 418 DADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSMVFV-AFVSILCLLGLSAT-------NGFVGLWIGL 489 (516)
Q Consensus 418 d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~-~~~~i~l~~~l~~~-------~G~~G~~~a~ 489 (516)
|+++.+.+.+++++++++.++++++.+..+++++.||+|.+++..+.. +++++|+++++.+. +|..|+|+++
T Consensus 349 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~ 428 (460)
T 3mkt_A 349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGF 428 (460)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHH
Confidence 988888999999999999999999999999999999999999976665 59999999999987 9999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 010159 490 TIYMSLRAFAGFWRIGTGT 508 (516)
Q Consensus 490 ~i~~~i~~~~~~~~~~~~~ 508 (516)
.+++++..++..++++|+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 429 IIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988887777643
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.76 E-value=1.2e-17 Score=172.51 Aligned_cols=203 Identities=16% Similarity=0.086 Sum_probs=189.1
Q ss_pred hhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcHHHH
Q 010159 303 RLKFGRFLQNGFLLLIRVMAVTFCVTLSASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFAKKDYERA 382 (516)
Q Consensus 303 ~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~i~~~g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g~~~~~~~ 382 (516)
+...|++++.++|.+++++...+...+|+.+++++|++++++++.+.++..+...+..+++++..|.+++.+|++|.++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 34589999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhcCCCHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHhhcChhhHHHHHH
Q 010159 383 TSSAARVLQLGLVLGLVLGAILGVALQYGAKLFTRDADVVRLIGIGIPFVASTQPINSLAFVFDGINFGASDYAYAACSM 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~ 462 (516)
++..+.+..+.+..++++.++ ..+.+++..++..|++..+.+..+++++.++.++..+.....+.+++.||++.++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG 166 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999998765 7888999999988898888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 463 VFVAFVSILCLLGLSA------TNGFVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 463 ~~~~~~~i~l~~~l~~------~~G~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
+...++++++++++++ .+|+.|+++++.+++.+..++..+.+++
T Consensus 167 ~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 216 (460)
T 3mkt_A 167 FIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVT 216 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999985 5899999999999999988877766654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=50.65 E-value=1.8e+02 Score=27.93 Aligned_cols=27 Identities=11% Similarity=-0.102 Sum_probs=15.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHH
Q 010159 477 SATNGFVGLWIGLTIYMSLRAFAGFWR 503 (516)
Q Consensus 477 ~~~~G~~G~~~a~~i~~~i~~~~~~~~ 503 (516)
....|....++...+..++..++..+.
T Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 407 VDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666665555555444443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.40 E-value=1.4e+02 Score=18.03 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 010159 482 FVGLWIGLTIYMSLRAFAGFWRIGT 506 (516)
Q Consensus 482 ~~G~~~a~~i~~~i~~~~~~~~~~~ 506 (516)
+.|+.++...+-.+...+.+++++|
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeec
Confidence 4455555555554444444444443
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=16.63 E-value=5.1e+02 Score=22.33 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh--------hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010159 338 GPTSMAAFQVCLQVWLATSLLADGLAVAGQAILASSFA--------KKDYERATSSAARVLQLGLVLGLVLGAILGVALQ 409 (516)
Q Consensus 338 g~~~va~~~i~~~i~~~~~~~~~~i~~a~~p~vs~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (516)
.+.-+.+|++...+.-...++..-+++-..|-+...-+ +.-.+|.+.++...-.++-.++++..+.-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44568889998888777777777778777776543322 3345677777655555555554444333333333
Q ss_pred HhHhhcCCCH-HHHHHHHhhHHHHHh
Q 010159 410 YGAKLFTRDA-DVVRLIGIGIPFVAS 434 (516)
Q Consensus 410 ~i~~lf~~d~-~~~~~~~~~l~~~~~ 434 (516)
|+ +++..++ .....+.-++|...+
T Consensus 136 WV-KF~~~~~~aa~~~t~vliPv~i~ 160 (214)
T 4hkr_A 136 WV-KFYDLSRRAAWSATVVLIPVMII 160 (214)
T ss_dssp HH-HHTTTCHHHHHHHHHHTHHHHHH
T ss_pred eE-EeecCCcHHHHHHHHHHHHHHHH
Confidence 33 5554443 333333334444433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.39 E-value=2.8e+02 Score=26.04 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-hcc---------chHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010159 454 DYAYAACSMVFVAFVSILCLLGLS-ATN---------GFVGLWIGLTIYMSLRAFAGFWRIGTGTGPW 511 (516)
Q Consensus 454 ~~~~~~~~~~~~~~~~i~l~~~l~-~~~---------G~~G~~~a~~i~~~i~~~~~~~~~~~~~~~w 511 (516)
++...|+...+...+.+|+.++.. +.+ .-.|-|+...+..+ .+++.++++|| ++|
T Consensus 274 ~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~-~~~~~~~~fkr--k~W 338 (339)
T 4ev6_A 274 KMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVV-IIMIFVYIFRR--SGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHH-HHHHHHHHHHT--TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHH-HHHHHHHHHHH--cCC
Confidence 556666654444455567766654 211 12355555444433 33444555665 457
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=9.18 E-value=3.8e+02 Score=16.57 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 010159 158 YEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVP 192 (516)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 192 (516)
++++++..+.+.+++..-..++++.=++.+...|+
T Consensus 5 ~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPW 39 (41)
T 1nkz_B 5 AEQSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566666667888777777777766666666554
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.07 E-value=4e+02 Score=16.74 Aligned_cols=10 Identities=0% Similarity=0.122 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 010159 284 IILLWKLIQQ 293 (516)
Q Consensus 284 l~~~~~~~~~ 293 (516)
+...++++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334445444
No 9
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=8.37 E-value=1.3e+02 Score=19.35 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=0.0
Q ss_pred cccCCCCCcCccCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 010159 140 ADCESKPLTSSCNVVKPKYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPL 193 (516)
Q Consensus 140 ~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i 193 (516)
||-+..+... -.++++++..+.+.+++..-..++++.=++.+...|++
T Consensus 1 ~d~~~~s~tG------LT~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 48 (48)
T 1dx7_A 1 ADKSDLGYTG------LTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPWF 48 (48)
T ss_dssp CCCGGGGHHH------HHHHHHHHHTHHHHHHHHHHTTHHHHHHHHHHHSSCCC
T ss_pred CCccCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 10
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=8.13 E-value=4.5e+02 Score=16.61 Aligned_cols=36 Identities=8% Similarity=-0.070 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 010159 158 YEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVPL 193 (516)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~i 193 (516)
++++++..+.+.+++..-..++++.=++.+...|++
T Consensus 10 ~~EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wrPWl 45 (45)
T 1lgh_B 10 EEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPWF 45 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Done!