Query 010159
Match_columns 516
No_of_seqs 212 out of 1871
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 21:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 29.6 1.7E+02 0.012 25.4 29.7 30 476-505 403-432 (447)
2 d2iuba2 f.17.3.1 (A:286-349) M 16.4 1E+02 0.0074 19.3 4.5 23 455-477 2-24 (64)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 10.8 4.4E+02 0.032 22.2 14.0 29 264-292 405-433 (447)
4 d1lghb_ f.3.1.1 (B:) Light-har 9.8 1.7E+02 0.012 16.8 3.5 36 157-192 7-42 (43)
5 d1nkzb_ f.3.1.1 (B:) Light-har 9.5 1.7E+02 0.012 16.4 4.1 34 377-410 6-39 (41)
6 d1jo5a_ f.3.1.1 (A:) Light-har 8.9 1.8E+02 0.013 17.2 3.4 36 157-192 12-47 (48)
7 d2cu8a2 g.39.1.3 (A:38-70) Cys 5.3 57 0.0042 17.5 -0.2 12 2-13 15-26 (33)
8 d1ijdb_ f.3.1.1 (B:) Light-har 4.5 3.2E+02 0.024 15.1 3.7 30 377-406 7-36 (40)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 4.4 2.8E+02 0.021 14.2 2.5 12 476-487 19-30 (33)
10 d1m56d_ f.23.8.1 (D:) Bacteria 3.2 4.7E+02 0.034 14.7 4.6 26 374-399 4-29 (42)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=29.63 E-value=1.7e+02 Score=25.38 Aligned_cols=30 Identities=10% Similarity=-0.128 Sum_probs=17.1
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010159 476 LSATNGFVGLWIGLTIYMSLRAFAGFWRIG 505 (516)
Q Consensus 476 l~~~~G~~G~~~a~~i~~~i~~~~~~~~~~ 505 (516)
+...+|..+.++......++..++......
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678777766666555555554444443
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=16.40 E-value=1e+02 Score=19.29 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 010159 455 YAYAACSMVFVAFVSILCLLGLS 477 (516)
Q Consensus 455 ~~~~~~~~~~~~~~~i~l~~~l~ 477 (516)
+...++....-..+.+|++++..
T Consensus 2 ~N~~mk~lT~it~iflP~t~i~g 24 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 45556654455556677777654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.75 E-value=4.4e+02 Score=22.25 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=14.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 264 FRLGVSGAAIAHVISQYLIAIILLWKLIQ 292 (516)
Q Consensus 264 ~~~Gv~Gaa~at~i~~~~~~l~~~~~~~~ 292 (516)
...|..+..+.......+..++......+
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666655555555555555444444433
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=9.83 E-value=1.7e+02 Score=16.83 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=22.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 010159 157 KYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVP 192 (516)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 192 (516)
.++++++..+.+.+++..=..++++.=++.+...|+
T Consensus 7 T~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 7 TEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666666667887776666666666666555443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.48 E-value=1.7e+02 Score=16.44 Aligned_cols=34 Identities=18% Similarity=0.017 Sum_probs=24.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010159 377 KDYERATSSAARVLQLGLVLGLVLGAILGVALQY 410 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (516)
++.|+..+....+.+....+.++.=++.+...||
T Consensus 6 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 6 EQSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 4568888888888888887777666666555554
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.93 E-value=1.8e+02 Score=17.16 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=23.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 010159 157 KYEHQRRYIPSASSAMVIGSILGLIQAIVLIAGAVP 192 (516)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 192 (516)
.++++++..+.+-+++..-..++++.=++.+...|+
T Consensus 12 T~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 12 TDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456667776667777776666666666666555544
No 7
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.32 E-value=57 Score=17.51 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=7.7
Q ss_pred ccccCCCcccCC
Q 010159 2 AEEFGSPACKKS 13 (516)
Q Consensus 2 ~~~~~~~~~~~~ 13 (516)
+|-.|.|+|.+.
T Consensus 15 aEH~gkPYC~~P 26 (33)
T d2cu8a2 15 AEHDGKPFCHKP 26 (33)
T ss_dssp EEETTEEECTTT
T ss_pred cccCCCcCcCcc
Confidence 456677777653
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.53 E-value=3.2e+02 Score=15.08 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=20.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010159 377 KDYERATSSAARVLQLGLVLGLVLGAILGV 406 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
++.++..+....+.+....+.++.=++.+.
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~ 36 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFT 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Confidence 456788888888888777666554444433
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.38 E-value=2.8e+02 Score=14.20 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=6.0
Q ss_pred HhhccchHHHHH
Q 010159 476 LSATNGFVGLWI 487 (516)
Q Consensus 476 l~~~~G~~G~~~ 487 (516)
+.+++|+..+++
T Consensus 19 lvfw~gv~avf~ 30 (33)
T d1xmec1 19 LVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444556555443
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.16 E-value=4.7e+02 Score=14.69 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=11.5
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHH
Q 010159 374 FAKKDYERATSSAARVLQLGLVLGLV 399 (516)
Q Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (516)
+|+-|.+...|.+.-.+++.--.++.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~ 29 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVV 29 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444444433333
Done!