Query 010161
Match_columns 516
No_of_seqs 316 out of 2371
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195 Transferrin receptor a 100.0 1.4E-70 3E-75 597.9 35.9 439 59-515 46-511 (702)
2 cd02121 PA_GCPII_like PA_GCPII 100.0 1.9E-36 4.1E-41 289.7 18.2 185 123-314 4-209 (220)
3 cd02128 PA_TfR PA_TfR: Proteas 100.0 3.7E-36 8.1E-41 278.5 16.9 160 155-321 19-182 (183)
4 cd02131 PA_hNAALADL2_like PA_h 100.0 1.2E-35 2.6E-40 263.6 13.0 131 152-292 2-138 (153)
5 PF04389 Peptidase_M28: Peptid 99.9 1.1E-26 2.5E-31 218.0 12.0 152 346-515 1-166 (179)
6 COG4882 Predicted aminopeptida 99.9 2.4E-24 5.1E-29 212.5 23.0 318 74-515 5-337 (486)
7 PRK10199 alkaline phosphatase 99.9 2.2E-22 4.7E-27 204.7 16.0 159 330-505 96-278 (346)
8 KOG2194 Aminopeptidases of the 99.8 1.8E-19 3.9E-24 197.3 10.6 172 329-515 126-301 (834)
9 COG2234 Iap Predicted aminopep 99.7 1.2E-17 2.6E-22 178.4 13.9 163 331-515 195-369 (435)
10 cd04819 PA_2 PA_2: Protease-as 99.6 9.3E-15 2E-19 129.8 11.2 104 156-293 14-119 (127)
11 KOG3946 Glutaminyl cyclase [Po 99.4 4.5E-12 9.6E-17 122.6 13.6 218 271-515 62-309 (338)
12 cd04820 PA_M28_1_1 PA_M28_1_1: 99.4 1.4E-12 3.1E-17 116.2 7.4 78 151-228 8-97 (137)
13 cd04816 PA_SaNapH_like PA_SaNa 99.3 9.8E-12 2.1E-16 109.6 10.1 107 155-292 7-113 (122)
14 cd02130 PA_ScAPY_like PA_ScAPY 99.3 1.9E-11 4E-16 107.8 11.0 99 156-292 13-113 (122)
15 PF09940 DUF2172: Domain of un 99.2 7.6E-11 1.6E-15 119.5 13.3 169 318-516 104-280 (386)
16 cd04822 PA_M28_1_3 PA_M28_1_3: 99.2 1.5E-11 3.3E-16 111.5 7.2 72 157-228 12-101 (151)
17 cd04817 PA_VapT_like PA_VapT_l 99.2 6.2E-11 1.3E-15 106.1 10.3 102 156-292 27-132 (139)
18 PF05450 Nicastrin: Nicastrin; 99.2 4.2E-10 9.2E-15 109.9 14.8 160 346-516 1-192 (234)
19 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.5E-10 3.1E-15 105.0 9.4 93 160-292 21-113 (143)
20 KOG2526 Predicted aminopeptida 99.1 2.8E-10 6E-15 115.8 10.2 113 327-439 189-315 (555)
21 PF02225 PA: PA domain; Inter 99.1 3.2E-10 7E-15 96.0 9.0 100 160-291 1-101 (101)
22 cd04814 PA_M28_1 PA_M28_1: Pro 99.1 1.5E-10 3.2E-15 103.9 6.9 65 158-227 13-100 (142)
23 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 1.1E-09 2.5E-14 98.0 11.6 106 156-293 8-126 (134)
24 cd00538 PA PA: Protease-associ 98.9 7.4E-09 1.6E-13 91.2 9.9 97 160-292 21-117 (126)
25 cd04821 PA_M28_1_2 PA_M28_1_2: 98.9 1.3E-08 2.8E-13 93.1 9.9 107 164-292 21-152 (157)
26 TIGR03176 AllC allantoate amid 98.8 1.6E-08 3.5E-13 107.3 9.4 79 331-412 55-139 (406)
27 cd02129 PA_hSPPL_like PA_hSPPL 98.8 2.1E-08 4.5E-13 87.6 8.3 74 187-292 40-113 (120)
28 cd02126 PA_EDEM3_like PA_EDEM3 98.7 4.3E-08 9.4E-13 86.9 8.8 100 164-293 16-118 (126)
29 cd02132 PA_GO-like PA_GO-like: 98.7 1.6E-07 3.5E-12 84.7 10.5 93 163-292 36-130 (139)
30 TIGR01879 hydantase amidase, h 98.6 8.9E-08 1.9E-12 101.4 9.4 78 332-412 54-137 (401)
31 cd02123 PA_C_RZF_like PA_C-RZF 98.6 2.4E-07 5.2E-12 84.9 9.7 101 161-293 36-139 (153)
32 cd02127 PA_hPAP21_like PA_hPAP 98.6 2.7E-07 5.8E-12 80.8 9.3 96 165-293 11-108 (118)
33 PRK13799 unknown domain/N-carb 98.5 1.8E-07 3.9E-12 103.8 8.9 79 330-411 236-320 (591)
34 PRK13590 putative bifunctional 98.5 2.5E-07 5.4E-12 102.7 9.3 77 331-410 237-319 (591)
35 cd02122 PA_GRAIL_like PA _GRAI 98.5 1.6E-06 3.5E-11 77.9 11.1 99 160-292 26-129 (138)
36 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.5E-06 3.2E-11 77.1 10.4 104 163-292 9-118 (127)
37 cd04813 PA_1 PA_1: Protease-as 98.4 9.5E-07 2.1E-11 77.2 8.1 75 188-292 36-110 (117)
38 PRK12890 allantoate amidohydro 98.4 9.6E-07 2.1E-11 93.9 9.4 79 332-413 61-145 (414)
39 PRK12891 allantoate amidohydro 98.3 1.5E-06 3.2E-11 92.6 9.2 76 332-410 63-144 (414)
40 PF01546 Peptidase_M20: Peptid 98.3 9E-06 2E-10 76.2 13.2 143 349-515 1-167 (189)
41 PRK09133 hypothetical protein; 98.2 5.6E-06 1.2E-10 89.6 11.4 82 331-416 88-192 (472)
42 PRK12893 allantoate amidohydro 98.1 6.5E-06 1.4E-10 87.5 9.0 79 332-413 63-147 (412)
43 PRK09290 allantoate amidohydro 98.1 7.9E-06 1.7E-10 86.9 9.3 79 332-413 60-144 (413)
44 PRK07906 hypothetical protein; 98.1 9.9E-06 2.2E-10 86.5 9.9 82 331-415 51-155 (426)
45 PRK12892 allantoate amidohydro 98.1 8.8E-06 1.9E-10 86.4 9.0 78 332-413 62-145 (412)
46 PRK06133 glutamate carboxypept 98.1 1.5E-05 3.3E-10 84.7 10.0 80 331-415 87-185 (410)
47 cd04818 PA_subtilisin_1 PA_sub 98.0 1.6E-05 3.4E-10 69.5 7.9 91 165-292 17-109 (118)
48 cd02124 PA_PoS1_like PA_PoS1_l 98.0 1.9E-05 4.1E-10 70.2 8.2 37 189-226 53-89 (129)
49 TIGR01910 DapE-ArgE acetylorni 98.0 1.6E-05 3.5E-10 83.3 9.0 78 332-413 52-152 (375)
50 TIGR01883 PepT-like peptidase 98.0 1.4E-05 3.1E-10 83.2 8.3 78 331-413 49-146 (361)
51 cd02120 PA_subtilisin_like PA_ 98.0 1.6E-05 3.5E-10 70.1 7.2 70 188-293 48-118 (126)
52 KOG2275 Aminoacylase ACY1 and 98.0 3.7E-05 8.1E-10 79.3 10.7 79 331-412 74-176 (420)
53 PRK08596 acetylornithine deace 98.0 2.8E-05 6.1E-10 82.9 9.8 80 332-414 63-166 (421)
54 PF05343 Peptidase_M42: M42 gl 98.0 6.1E-05 1.3E-09 76.3 11.6 125 361-515 132-277 (292)
55 PRK13983 diaminopimelate amino 98.0 4.5E-05 9.7E-10 80.5 10.7 80 331-414 63-166 (400)
56 PRK13381 peptidase T; Provisio 97.8 6.2E-05 1.3E-09 79.8 9.2 79 331-413 54-184 (404)
57 PRK09104 hypothetical protein; 97.8 7.8E-05 1.7E-09 80.6 10.1 82 331-415 68-177 (464)
58 PRK06837 acetylornithine deace 97.8 7.2E-05 1.6E-09 80.0 9.7 80 330-412 82-184 (427)
59 TIGR01892 AcOrn-deacetyl acety 97.8 0.00012 2.6E-09 76.2 11.0 78 331-415 46-145 (364)
60 PRK13013 succinyl-diaminopimel 97.8 0.00011 2.3E-09 78.5 10.8 79 331-413 71-170 (427)
61 PRK07907 hypothetical protein; 97.8 0.00011 2.4E-09 79.1 10.7 78 331-415 70-170 (449)
62 PRK07473 carboxypeptidase; Pro 97.8 0.00012 2.6E-09 77.0 10.0 81 332-415 62-161 (376)
63 TIGR01893 aa-his-dipept aminoa 97.8 8.2E-05 1.8E-09 80.7 9.0 75 332-413 47-152 (477)
64 PRK08262 hypothetical protein; 97.7 0.00013 2.8E-09 79.4 10.2 79 332-413 98-201 (486)
65 PRK08588 succinyl-diaminopimel 97.7 0.00011 2.4E-09 77.1 9.2 77 331-413 48-147 (377)
66 PRK06915 acetylornithine deace 97.7 0.00013 2.8E-09 77.8 9.5 79 331-413 80-181 (422)
67 TIGR01880 Ac-peptdase-euk N-ac 97.6 0.00021 4.5E-09 75.7 9.7 80 331-413 57-160 (400)
68 PRK07338 hypothetical protein; 97.6 0.00016 3.4E-09 76.6 8.8 79 332-415 81-178 (402)
69 TIGR01882 peptidase-T peptidas 97.6 0.00016 3.5E-09 76.9 8.7 78 331-412 57-187 (410)
70 PRK09961 exoaminopeptidase; Pr 97.6 0.00036 7.8E-09 72.5 10.9 126 360-515 163-310 (344)
71 PRK07522 acetylornithine deace 97.6 0.00022 4.8E-09 74.9 9.0 77 331-414 52-150 (385)
72 PRK07079 hypothetical protein; 97.6 0.00046 1E-08 74.7 11.4 82 331-415 72-177 (469)
73 PRK05469 peptidase T; Provisio 97.6 0.00023 5E-09 75.6 8.9 79 331-413 55-186 (408)
74 TIGR03107 glu_aminopep glutamy 97.6 0.00049 1.1E-08 71.5 10.9 123 361-515 176-318 (350)
75 PRK06446 hypothetical protein; 97.6 0.00039 8.4E-09 74.6 10.6 79 331-415 50-151 (436)
76 PRK08201 hypothetical protein; 97.6 0.00045 9.7E-09 74.5 10.9 81 331-415 66-169 (456)
77 COG4310 Uncharacterized protei 97.5 0.0003 6.5E-09 69.8 7.8 84 338-434 173-256 (435)
78 TIGR01886 dipeptidase dipeptid 97.5 0.00042 9E-09 75.1 9.5 79 333-415 67-166 (466)
79 PRK13009 succinyl-diaminopimel 97.5 0.00056 1.2E-08 71.6 9.9 77 331-413 47-147 (375)
80 COG0624 ArgE Acetylornithine d 97.4 0.00076 1.6E-08 71.6 10.3 83 330-416 61-166 (409)
81 PRK07318 dipeptidase PepV; Rev 97.4 0.00047 1E-08 74.6 8.6 78 333-414 68-166 (466)
82 PRK05111 acetylornithine deace 97.4 0.00052 1.1E-08 72.1 8.7 76 331-414 60-157 (383)
83 PRK08554 peptidase; Reviewed 97.4 0.00095 2.1E-08 71.7 10.6 75 332-414 53-149 (438)
84 PRK04443 acetyl-lysine deacety 97.4 0.00055 1.2E-08 71.1 8.5 74 332-414 49-136 (348)
85 PRK13007 succinyl-diaminopimel 97.3 0.00091 2E-08 69.3 9.6 75 332-415 50-142 (352)
86 PRK08652 acetylornithine deace 97.3 0.00062 1.3E-08 70.3 7.9 74 331-415 47-134 (347)
87 PRK07205 hypothetical protein; 97.3 0.0012 2.5E-08 71.1 9.8 75 333-413 66-163 (444)
88 PRK13004 peptidase; Reviewed 97.2 0.0012 2.7E-08 69.8 9.5 76 332-413 59-158 (399)
89 COG1363 FrvX Cellulase M and r 97.2 0.0019 4.2E-08 66.7 9.9 118 361-506 178-316 (355)
90 PRK09864 putative peptidase; P 97.2 0.003 6.4E-08 65.8 11.2 123 361-515 173-318 (356)
91 PRK08651 succinyl-diaminopimel 97.2 0.0012 2.7E-08 69.5 8.5 76 331-415 63-160 (394)
92 PRK06156 hypothetical protein; 97.2 0.0023 4.9E-08 70.3 10.8 78 333-415 97-203 (520)
93 TIGR01900 dapE-gram_pos succin 97.1 0.0027 5.8E-08 66.7 10.0 80 333-415 42-156 (373)
94 TIGR01887 dipeptidaselike dipe 97.1 0.0029 6.3E-08 68.2 10.2 66 345-413 67-153 (447)
95 TIGR01902 dapE-lys-deAc N-acet 97.0 0.0025 5.5E-08 65.8 8.4 74 332-415 40-127 (336)
96 TIGR01246 dapE_proteo succinyl 96.9 0.0045 9.8E-08 64.7 9.6 77 331-413 44-144 (370)
97 TIGR01891 amidohydrolases amid 96.9 0.0058 1.3E-07 63.8 10.3 79 331-414 43-137 (363)
98 PLN02693 IAA-amino acid hydrol 96.7 0.0052 1.1E-07 66.0 8.6 78 331-414 90-183 (437)
99 PRK00466 acetyl-lysine deacety 96.7 0.0034 7.4E-08 65.1 7.0 61 347-414 62-136 (346)
100 PRK15026 aminoacyl-histidine d 96.6 0.014 3E-07 63.6 10.9 89 331-431 52-171 (485)
101 COG4187 RocB Arginine degradat 96.5 0.01 2.2E-07 61.9 8.7 99 329-432 63-208 (553)
102 KOG2657 Transmembrane glycopro 96.5 0.015 3.3E-07 61.6 9.8 86 328-414 154-251 (596)
103 TIGR03526 selenium_YgeY putati 96.3 0.015 3.3E-07 61.4 9.2 76 332-413 57-156 (395)
104 PLN02280 IAA-amino acid hydrol 96.3 0.012 2.6E-07 63.9 8.5 76 331-413 140-232 (478)
105 KOG2442 Uncharacterized conser 96.1 0.019 4E-07 60.5 8.1 95 166-292 72-166 (541)
106 PRK08737 acetylornithine deace 96.0 0.022 4.9E-07 59.6 8.6 69 331-414 54-144 (364)
107 TIGR03320 ygeY M20/DapE family 96.0 0.026 5.7E-07 59.6 8.9 76 332-413 57-156 (395)
108 PRK10199 alkaline phosphatase 96.0 0.022 4.9E-07 58.8 8.0 46 70-115 32-79 (346)
109 TIGR03106 trio_M42_hydro hydro 95.9 0.055 1.2E-06 56.2 10.3 117 362-506 182-313 (343)
110 PF04114 Gaa1: Gaa1-like, GPI 95.8 0.19 4.2E-06 54.9 14.7 96 330-434 2-110 (504)
111 PRK02256 putative aminopeptida 95.6 0.049 1.1E-06 58.7 8.9 55 348-409 245-299 (462)
112 PTZ00371 aspartyl aminopeptida 94.8 0.1 2.2E-06 56.5 8.4 130 360-505 248-424 (465)
113 PRK02813 putative aminopeptida 93.6 0.42 9.1E-06 51.2 10.0 122 360-505 231-397 (428)
114 KOG2276 Metalloexopeptidases [ 93.2 0.29 6.3E-06 51.0 7.7 84 331-417 77-183 (473)
115 KOG4628 Predicted E3 ubiquitin 92.2 0.19 4E-06 51.8 4.8 73 187-291 75-147 (348)
116 KOG3920 Uncharacterized conser 91.0 0.23 5E-06 44.9 3.4 36 187-223 83-118 (193)
117 COG1473 AbgB Metal-dependent a 88.7 2.3 5E-05 45.0 9.3 78 332-414 57-150 (392)
118 KOG3946 Glutaminyl cyclase [Po 82.3 6.4 0.00014 39.4 8.1 56 59-115 41-96 (338)
119 PRK12893 allantoate amidohydro 81.5 2.5 5.4E-05 44.8 5.6 46 66-111 7-60 (412)
120 KOG2194 Aminopeptidases of the 77.9 6.6 0.00014 45.0 7.5 40 65-104 53-94 (834)
121 PRK09290 allantoate amidohydro 76.5 4.5 9.8E-05 42.9 5.7 47 65-111 3-57 (413)
122 PRK12891 allantoate amidohydro 76.2 4.6 0.0001 42.9 5.6 44 69-112 10-61 (414)
123 PRK12890 allantoate amidohydro 75.8 5.4 0.00012 42.3 6.1 44 68-111 8-58 (414)
124 KOG3566 Glycosylphosphatidylin 74.4 9.5 0.00021 41.8 7.3 79 328-416 117-196 (617)
125 TIGR03176 AllC allantoate amid 71.4 5.3 0.00011 42.5 4.6 52 70-121 4-64 (406)
126 PRK15026 aminoacyl-histidine d 70.8 8.9 0.00019 41.9 6.3 52 65-118 6-58 (485)
127 PRK13799 unknown domain/N-carb 67.3 7.6 0.00017 43.5 5.0 53 69-121 181-246 (591)
128 PRK13013 succinyl-diaminopimel 65.1 1.1E+02 0.0024 32.4 13.2 43 69-111 14-57 (427)
129 TIGR01879 hydantase amidase, h 65.0 9.2 0.0002 40.4 4.9 43 70-112 2-52 (401)
130 PRK06133 glutamate carboxypept 61.2 46 0.001 35.3 9.4 45 68-112 36-81 (410)
131 PRK06915 acetylornithine deace 60.0 18 0.0004 38.3 6.1 53 57-111 3-57 (422)
132 PRK12892 allantoate amidohydro 57.7 20 0.00044 37.8 5.9 45 67-111 8-59 (412)
133 PLN02693 IAA-amino acid hydrol 56.5 46 0.00099 35.8 8.4 39 69-109 47-85 (437)
134 PRK13590 putative bifunctional 55.6 19 0.00041 40.3 5.5 46 68-113 180-237 (591)
135 TIGR01893 aa-his-dipept aminoa 52.2 24 0.00052 38.3 5.5 43 68-112 3-45 (477)
136 PRK08652 acetylornithine deace 47.5 34 0.00075 34.9 5.5 42 69-112 2-43 (347)
137 PRK07338 hypothetical protein; 47.4 44 0.00096 35.1 6.5 43 69-111 17-60 (402)
138 TIGR01886 dipeptidase dipeptid 47.3 2.1E+02 0.0046 30.9 11.8 41 70-110 14-64 (466)
139 PRK05111 acetylornithine deace 45.4 40 0.00086 35.1 5.7 45 68-112 4-53 (383)
140 TIGR03107 glu_aminopep glutamy 43.9 19 0.00041 37.6 2.9 31 329-359 38-68 (350)
141 PRK08596 acetylornithine deace 42.4 49 0.0011 35.1 5.9 44 69-112 13-57 (421)
142 TIGR01880 Ac-peptdase-euk N-ac 41.1 55 0.0012 34.4 6.0 43 68-110 8-50 (400)
143 PRK09961 exoaminopeptidase; Pr 40.3 23 0.00049 36.9 2.9 28 330-359 41-68 (344)
144 PRK09133 hypothetical protein; 40.0 52 0.0011 35.5 5.7 42 68-109 36-77 (472)
145 KOG0538 Glycolate oxidase [Ene 37.8 36 0.00077 34.7 3.6 45 178-223 263-307 (363)
146 PRK13983 diaminopimelate amino 36.2 68 0.0015 33.5 5.8 42 70-111 6-51 (400)
147 PRK08651 succinyl-diaminopimel 36.0 68 0.0015 33.5 5.7 45 69-113 6-51 (394)
148 TIGR01910 DapE-ArgE acetylorni 35.6 55 0.0012 34.0 4.9 38 74-111 3-41 (375)
149 PRK04443 acetyl-lysine deacety 35.3 72 0.0016 32.8 5.7 42 69-112 6-47 (348)
150 TIGR03106 trio_M42_hydro hydro 34.9 72 0.0016 33.2 5.5 44 69-114 3-46 (343)
151 TIGR01935 NOT-MenG RraA famliy 34.0 1.2E+02 0.0026 27.6 6.2 69 155-225 18-91 (150)
152 PRK08588 succinyl-diaminopimel 33.8 80 0.0017 32.8 5.8 41 70-112 3-43 (377)
153 PRK06837 acetylornithine deace 33.4 90 0.0019 33.2 6.2 40 69-110 20-59 (427)
154 TIGR02998 RraA_entero regulato 33.0 1.7E+02 0.0036 27.0 7.0 71 154-226 21-96 (161)
155 TIGR01891 amidohydrolases amid 32.8 56 0.0012 33.8 4.4 37 72-110 2-38 (363)
156 TIGR01883 PepT-like peptidase 32.5 63 0.0014 33.3 4.8 40 71-112 2-41 (361)
157 PRK00466 acetyl-lysine deacety 32.5 1E+02 0.0022 31.7 6.2 42 69-112 10-51 (346)
158 cd01356 AcnX_swivel Putative A 31.4 1.1E+02 0.0023 27.0 5.2 52 166-226 27-80 (123)
159 PRK05469 peptidase T; Provisio 31.2 88 0.0019 33.0 5.6 44 71-114 4-56 (408)
160 TIGR01882 peptidase-T peptidas 31.1 1.1E+02 0.0023 32.5 6.2 40 82-121 24-66 (410)
161 PRK07522 acetylornithine deace 30.2 91 0.002 32.4 5.5 41 69-110 4-44 (385)
162 COG2195 PepD Di- and tripeptid 28.6 44 0.00095 35.7 2.7 42 66-109 2-43 (414)
163 PF02662 FlpD: Methyl-viologen 27.3 3.3E+02 0.0072 23.8 7.7 42 187-228 22-64 (124)
164 PRK09372 ribonuclease activity 26.2 2.2E+02 0.0048 26.1 6.6 69 156-225 23-95 (159)
165 TIGR02708 L_lactate_ox L-lacta 25.5 1.5E+02 0.0033 31.2 6.0 33 190-223 280-312 (367)
166 PRK06446 hypothetical protein; 25.1 1.4E+02 0.0031 31.8 6.0 43 70-112 3-46 (436)
167 PRK13007 succinyl-diaminopimel 24.3 1.3E+02 0.0027 30.8 5.2 40 69-110 7-47 (352)
168 PRK07473 carboxypeptidase; Pro 23.4 1.8E+02 0.0039 30.4 6.2 44 68-111 10-54 (376)
169 PF12459 DUF3687: D-Ala-teicho 23.4 1.3E+02 0.0028 21.3 3.4 26 18-43 10-35 (42)
170 PRK07906 hypothetical protein; 22.2 1.2E+02 0.0025 32.3 4.6 25 87-111 21-45 (426)
171 PRK13009 succinyl-diaminopimel 21.7 1.4E+02 0.0031 30.8 5.0 39 71-111 4-42 (375)
172 PLN02280 IAA-amino acid hydrol 20.7 2E+02 0.0044 31.3 6.1 39 70-110 98-136 (478)
173 PF01884 PcrB: PcrB family; I 20.7 1.3E+02 0.0028 29.5 4.1 56 166-223 153-211 (230)
174 PRK13004 peptidase; Reviewed 20.3 1.9E+02 0.004 30.4 5.6 38 69-108 15-52 (399)
175 COG1363 FrvX Cellulase M and r 20.1 1.8E+02 0.004 30.4 5.3 43 70-114 3-45 (355)
No 1
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.4e-70 Score=597.91 Aligned_cols=439 Identities=43% Similarity=0.688 Sum_probs=377.2
Q ss_pred HHHHHcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCc-eeeeeeEEEEeeecc---ceEEEEcCCCcE
Q 010161 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEYKALLSYPVH---ASVSAHFSNGTT 134 (516)
Q Consensus 59 ~~~~l~~~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~y~v~~~~p~~---~~l~l~~~~g~~ 134 (516)
...++.+...+++..+++.++..+|.+||..+.+++.++..+|.+.|++ ...-.|++.++||.. ....+...++.+
T Consensus 46 ~~l~~~~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~ 125 (702)
T KOG2195|consen 46 LELAQGELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLE 125 (702)
T ss_pred HHHhhhhccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccce
Confidence 4455556677789999999999999999999999999999999999997 589999999999953 233333445555
Q ss_pred E-EEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHH
Q 010161 135 V-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLA 212 (516)
Q Consensus 135 ~-~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A 212 (516)
+ .....+....+| ...+.+++|.+|++.|.++|++||+|||+.+||..|+..+++++|||+|+|++.++ +|+|+++|
T Consensus 126 i~~s~~~~~~~~Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~-~g~~~~na 204 (702)
T KOG2195|consen 126 IFSSMPHELQVDGDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIY-RGKKVKNA 204 (702)
T ss_pred eeccchhcccCCCcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccc-hhhhHhhH
Confidence 5 344455555566 44677889999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCeEEEEeecCCCcCC----------------Ccceeeceec--cCCCCCCCCCCCCCCCcccccccccccCCCCCC
Q 010161 213 EAKGAIGVLLYAEWDRLRG----------------GGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKI 274 (516)
Q Consensus 213 ~~~GA~gvIi~~dp~~~~~----------------~~v~rg~v~~--~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~I 274 (516)
+.+||.|||+|+||.++.. ..+++|+|.. +.|||.||+||+.....|... +......+|+|
T Consensus 205 ~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~~~P~I 283 (702)
T KOG2195|consen 205 EAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSGGLPKI 283 (702)
T ss_pred HHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcCCCCCC
Confidence 9999999999999876543 2478899984 899999999999987777663 22233568999
Q ss_pred ceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCCceE-EE-EEEeeeeeeeeEeEEEEEEcCcCCCCcEEEEee
Q 010161 275 PSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTM-VN-LTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGN 352 (516)
Q Consensus 275 P~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~g~~~~~-v~-l~~~~~~~~~~~~NVi~~i~G~~~~~~~viiga 352 (516)
|++||++++|+.|++.++|...++ ++.+..|+++|++.. .. +.+....+..+++||||+|+|+++||++|||||
T Consensus 284 p~~Pis~~~ae~l~~~~~g~~~~~----~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~Viiga 359 (702)
T KOG2195|consen 284 PSLPISAEDAEILLRLLGGGVKPD----GLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGA 359 (702)
T ss_pred CCcCccchhHHHHHHHhCCCcccc----cccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEec
Confidence 999999999999999998877665 222367888888641 11 122256778999999999999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccc
Q 010161 353 HRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAV 432 (516)
Q Consensus 353 H~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~ 432 (516)
|+|||.+||.|+++|+|+|+|++|.|..+++.||||+|||+|++|+|||+|++||++|+|++...++.++++|||+|+++
T Consensus 360 hrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~ 439 (702)
T KOG2195|consen 360 HRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAV 439 (702)
T ss_pred cccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHhcCCCeEEEeeecCCCCc
Q 010161 433 QG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGKGLAL 511 (516)
Q Consensus 433 ~g-~~l~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~l~~~~~~p~ 511 (516)
.+ .+|.+.++|.|.++++++++.+.+|....++. .+..+ +++|||.+|++++|||++++.|+..||+
T Consensus 440 ~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~-----------~v~~~-g~~Sd~~~F~~~~GIpsv~~~f~~~yP~ 507 (702)
T KOG2195|consen 440 LGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN-----------RVLSL-GGGSDYASFLQFAGIPSVDFAFNRTYPF 507 (702)
T ss_pred cCCceeEEecCccHHHHHHHHHhccCCCCccccce-----------eEecc-CCCCcchhhccccCcceeeeeecCCcce
Confidence 99 89999999999999999999999887643322 12344 6899999999999999999999999999
Q ss_pred Cccc
Q 010161 512 VFYI 515 (516)
Q Consensus 512 YHt~ 515 (516)
|||.
T Consensus 508 yhs~ 511 (702)
T KOG2195|consen 508 YHST 511 (702)
T ss_pred eecc
Confidence 9985
No 2
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=100.00 E-value=1.9e-36 Score=289.66 Aligned_cols=185 Identities=38% Similarity=0.599 Sum_probs=154.7
Q ss_pred ceEEEEcCCCcEEEEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCC
Q 010161 123 ASVSAHFSNGTTVELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGS 201 (516)
Q Consensus 123 ~~l~l~~~~g~~~~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~ 201 (516)
.++.+..+++... ++.|+....+ .+.+.+++|++||++|.++|+|||||||+.+||+.|++.+++++|||||+|+|.
T Consensus 4 ~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~f~a~s~sg~v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~ 81 (220)
T cd02121 4 RSLILTKPDGATG--KLIEDTVLEEPPSPDVVPPFHAYSASGNVTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGG 81 (220)
T ss_pred ccceeecCCCccc--cccccccccCCCCccccccceecCCCCCceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCC
Confidence 3445554444321 3334333222 234568899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHcCCeEEEEeecCCCc-----------------CCCcceeecee---ccCCCCCCCCCCCCCCCcccc
Q 010161 202 VLSRSGVIFLAEAKGAIGVLLYAEWDRL-----------------RGGGVERGTVM---RGVGDPLSPGWAGVEGGESLD 261 (516)
Q Consensus 202 ~~~~~~k~~~A~~~GA~gvIi~~dp~~~-----------------~~~~v~rg~v~---~~~Gdp~tP~~~s~~~~~r~~ 261 (516)
++ ++.|+++|+++||+|||||+||.++ +.+++|||+|+ .+.|||+|||||+.++.+|+.
T Consensus 82 ~~-~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~ 160 (220)
T cd02121 82 IF-RGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRD 160 (220)
T ss_pred cc-HHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccC
Confidence 98 8999999999999999999998665 23789999999 589999999999999999887
Q ss_pred cccccccCCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCC
Q 010161 262 LEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPG 314 (516)
Q Consensus 262 ~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~g~~ 314 (516)
..+ ...+|+||++|||+++|++||+.|+|..+|..|+++++ ..|++|++
T Consensus 161 ~~~---~~~lP~IPs~PIS~~da~~lL~~L~g~~~p~~W~g~l~-~~y~~g~~ 209 (220)
T cd02121 161 KEE---SKGLPKIPSLPISYRDAQPLLKALGGPGAPSDWQGGLP-VTYRLGFG 209 (220)
T ss_pred ccc---ccCCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCC-CceeeCCC
Confidence 533 24789999999999999999999999999999999986 78888765
No 3
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=100.00 E-value=3.7e-36 Score=278.50 Aligned_cols=160 Identities=32% Similarity=0.512 Sum_probs=142.6
Q ss_pred cccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCC---
Q 010161 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG--- 231 (516)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~--- 231 (516)
+|++||++|+++|++||||||+.+||++|++.+++++|||||+|||.++ +++|+++|+++||+|||||+||.|+..
T Consensus 19 ~f~~~s~~G~v~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~-~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~ 97 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKIS-FAEKVANAEKLGAVGVLIYPDPADFPIDPS 97 (183)
T ss_pred cccCCCCCCceEEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCC-HHHHHHHHHHCCCEEEEEecCHHHcCcccC
Confidence 4899999999999999999999999999999999999999999999998 999999999999999999999876542
Q ss_pred CcceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCcc
Q 010161 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRV 311 (516)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~ 311 (516)
+++|||+++++.|||+||+||+.++. ++...+ +..+|+||++|||+++|++||+.|+|..+|..|+++ ...|++
T Consensus 98 ~~~~~g~~~~~~GDplTPG~ps~~~~-~~~~~~---~~~lP~IPs~PIS~~da~~lL~~l~G~~~p~~w~g~--~~~y~~ 171 (183)
T cd02128 98 ETALFGHVHLGTGDPYTPGFPSFNHT-QFPPSQ---SSGLPNIPAQTISAAAAAKLLSKMGGPVCPSGWKGG--DSTCRL 171 (183)
T ss_pred cceeecceeccCCCcCCCCCcccccc-ccCccc---ccCCCCCCEeccCHHHHHHHHHHcCCCCCCccccCC--CcCEee
Confidence 46899999999999999999999865 344332 236899999999999999999999999999999998 489999
Q ss_pred CCCc-eEEEEE
Q 010161 312 GPGP-TMVNLT 321 (516)
Q Consensus 312 g~~~-~~v~l~ 321 (516)
||+. .+|+|+
T Consensus 172 Gp~~~~~v~~~ 182 (183)
T cd02128 172 GTSSSKNVKLT 182 (183)
T ss_pred CCCCCceEEEe
Confidence 9984 346664
No 4
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=100.00 E-value=1.2e-35 Score=263.62 Aligned_cols=131 Identities=27% Similarity=0.319 Sum_probs=116.5
Q ss_pred ccccccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCC
Q 010161 152 VVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (516)
Q Consensus 152 ~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~ 231 (516)
++++|++||++|+|+|++||||||+.|||++|++ +++|+|||||+|||+++ ||.|+++|+++||+|||||+||.|+..
T Consensus 2 ~~p~f~aYS~sG~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~-RG~Kv~~A~~~GA~GviIYsDP~d~~~ 79 (153)
T cd02131 2 LLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAP-LLYKLSLLEEAGFGGVLLYVDPCDLPK 79 (153)
T ss_pred CcCccceeCCCCceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcc-hHHHHHHHHHCCCeEEEEecChhhccC
Confidence 5678999999999999999999999999999988 69999999999999999 999999999999999999999987642
Q ss_pred C-----cceeeceecc-CCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 232 G-----GVERGTVMRG-VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 232 ~-----~v~rg~v~~~-~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
. ++|| ++.+ .|||+||||||+++++|++. ..+|+||++|||+++|+.||+.-.
T Consensus 80 ~~~~~~~v~~--v~~~~~GDP~TPG~PS~~~~~R~~~------~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 80 TRHTWHQAFM--VSLNPGGDPSTPGYPSADQSCRQCR------GNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cCCCccceEE--EecCCCCCCCCCCCccccCcccCCc------CCCCCCcccccCHHHHHHHHhCCc
Confidence 1 3443 4444 49999999999999999873 268999999999999999998764
No 5
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.94 E-value=1.1e-26 Score=218.05 Aligned_cols=152 Identities=30% Similarity=0.415 Sum_probs=111.4
Q ss_pred cEEEEeecCCC--------CCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhc
Q 010161 346 RYVLLGNHRDA--------WTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (516)
Q Consensus 346 ~~viigaH~Ds--------~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~ 417 (516)
++|||+||+|| +.+||+||+||+|+|||+||.|+++ +.+|+|+|+|++|+|||.|+.||++|+++ ...
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~---~~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~ 76 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKEL---KPQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHE 76 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHS---THSSSEEEEEEEESSGGGTSHHHHHHHHH-HHC
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHh---hcccCccEEEEEecccccCccchHHHHHh-hhc
Confidence 58999999999 6679999999999999999999874 34789999999999999999999999984 445
Q ss_pred ccccEEEEEEecccccC-CCcccccChhHH----HHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHH
Q 010161 418 LGAKAVAYLNVDCAVQG-PGFFAGATPQLD----DILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASF 492 (516)
Q Consensus 418 ~~~~~~a~inlD~~~~g-~~l~~~~sP~l~----~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F 492 (516)
+.+++.++||+||+|.+ ..+.....+.+. ..+.+..+.+. ..+.... ........+|||.||
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~sD~~~F 143 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYG------SSLGPDV-------PPEKPTFGGSDHYPF 143 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHH------CHTSSEC-------EEEESSTTSSTCHHH
T ss_pred ccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhh------ccccccc-------ccccCCCCCCCcHhh
Confidence 56899999999999998 555565665433 33333322211 0000000 001123578999999
Q ss_pred HhcCCCeEEEeeecC-CCCcCccc
Q 010161 493 VQHAGVPSVDMYYGK-GLALVFYI 515 (516)
Q Consensus 493 ~~~~GIPs~~l~~~~-~~p~YHt~ 515 (516)
.. .|||++.+.... ..+.|||.
T Consensus 144 ~~-~gip~~~~~~~~~~~~~~Ht~ 166 (179)
T PF04389_consen 144 SK-AGIPAVTLSSTDGYNPYYHTP 166 (179)
T ss_dssp HT-TT-EEEEEEESSSSGTTTTST
T ss_pred hc-CCEeEEEEEecCCCCCCCCCc
Confidence 97 799999999876 78999996
No 6
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=212.48 Aligned_cols=318 Identities=24% Similarity=0.235 Sum_probs=231.5
Q ss_pred HHHHhhc-CCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEEEEeeeccceEEEEcCCCcEEEEEeccccccccccccc
Q 010161 74 YLRDLTH-HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALLSYPVHASVSAHFSNGTTVELSLTEKGISQNAILDV 152 (516)
Q Consensus 74 ~L~~Ls~-~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~v~~~~p~~~~l~l~~~~g~~~~~~l~e~~~~~~~~~~~ 152 (516)
.++.++. +--.+|++|+..+++||.+.+++.-...++.++.|+.|.-.+..++.-+ +- .
T Consensus 5 y~k~~~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~~~---~~-----------------i 64 (486)
T COG4882 5 YSKLKGAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEPAA---SW-----------------I 64 (486)
T ss_pred HHHHhhhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCcch---hh-----------------h
Confidence 3444443 4568899999999999999999987778999999999976654443311 10 1
Q ss_pred cccccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccc-hhHHHHHHHcCCeEEEEeecCCCcCC
Q 010161 153 VQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSR-SGVIFLAEAKGAIGVLLYAEWDRLRG 231 (516)
Q Consensus 153 ~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~-~~k~~~A~~~GA~gvIi~~dp~~~~~ 231 (516)
.....+||-+|+++|.+|..+ -|+.|+|++.+..+.... ...+..|+++||.|+||-+++..
T Consensus 65 ~ai~~PYsls~~IEgr~v~~~--------------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~r--- 127 (486)
T COG4882 65 SAIVGPYSLSGDIEGRPVVLE--------------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPR--- 127 (486)
T ss_pred hhcccccccccccccceeccc--------------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCce---
Confidence 112468999999999999753 389999999998775412 23466799999999999887632
Q ss_pred CcceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCcc
Q 010161 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRV 311 (516)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~ 311 (516)
..|. .|| |.++ .+ ...++||+..+.-++...+-
T Consensus 128 -----riV~--~Gd-----~gy~-----~~-------s~PtPIPva~v~en~~~y~~----------------------- 160 (486)
T COG4882 128 -----RIVT--GGD-----WGYS-----VS-------SSPTPIPVAVVPENYSRYAE----------------------- 160 (486)
T ss_pred -----eEEe--ccc-----cccc-----CC-------CCCCCcceEEeccCcchhhc-----------------------
Confidence 1111 132 3221 11 13467999988655554432
Q ss_pred CCCceEEEEEEeeeeeeeeEeEEEEEEcCcCCCCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCc
Q 010161 312 GPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (516)
Q Consensus 312 g~~~~~v~l~~~~~~~~~~~~NVi~~i~G~~~~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~ 391 (516)
+..++++.++.......++|+|+.-.|. +.+|+|+||+|||..|+.||-.|++..+++++.|.. . .-.
T Consensus 161 --~~~rvrl~vD~~~~~ty~y~~Ia~~~~e---n~vv~i~AH~DHW~~G~tDN~lg~~~AV~~~~~lr~---~----~~~ 228 (486)
T COG4882 161 --EAGRVRLWVDACVERTYDYNVIAVDGGE---NGVVLIGAHLDHWYTGFTDNILGVAQAVETAGRLRG---R----GLA 228 (486)
T ss_pred --cceeEEEEEecccceeEEEEEEEecCCC---CCceEEeechhhhhhcccchhhhHHHHHHHHHHHhh---c----Ccc
Confidence 1245777777666667999999998765 579999999999999999999999999999887753 1 245
Q ss_pred EEEEEeCCCcCCC---------ccHHHHHHHhhhcccccEEEEEEecccccCCCcccccChhHHHHHHHHHHh-cCCCCC
Q 010161 392 IIFCSWDAEEFGM---------IGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKM-VKDPES 461 (516)
Q Consensus 392 i~f~~~~~eE~gl---------~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~l~~~~sP~l~~l~~~~~~~-v~~p~~ 461 (516)
+-+++|++||.|+ .||+.|+++++.. +.+.+|+|+|.++.+ .+...+.|.|.....++.+. +..|
T Consensus 229 ~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~~--~~v~~~VN~Dv~g~~-~lv~~~~P~L~e~~~~~g~~~vesp-- 303 (486)
T COG4882 229 AGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKAA--EEVEAYVNFDVAGYR-CLVASGAPQLVEHALEAGAVEVESP-- 303 (486)
T ss_pred eeEEEEeccccCCCCCcceeecccchHHHhhcCCc--hhhhheecccccccc-chhhhcChHHHHHHHHhCCceecCC--
Confidence 7889999999885 6899999987764 578999999999874 67788999998887765431 2211
Q ss_pred CccchhhhccCCCccccccCCCCCCCcHHHHHhcCCCeEEEeeec---CCCCcCccc
Q 010161 462 ESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYG---KGLALVFYI 515 (516)
Q Consensus 462 ~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~l~~~---~~~p~YHt~ 515 (516)
-..+|-..+.. +|||++.+..- .....||++
T Consensus 304 ----------------------e~y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p 337 (486)
T COG4882 304 ----------------------EPYCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTP 337 (486)
T ss_pred ----------------------Ccccchhhhhh-cCCCeeEeeeccCCCccceecCC
Confidence 13356666666 79999999763 245778876
No 7
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.89 E-value=2.2e-22 Score=204.66 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=115.8
Q ss_pred eEeEEEEEEcCcCCCCcEEEEeecCCCCC----------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 010161 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (516)
Q Consensus 330 ~~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~ 393 (516)
+..||||.++|+. ++.|||+||+|++. +||+||++|+|+|||+||.|.+. +++++|+
T Consensus 96 ~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~ 168 (346)
T PRK10199 96 TGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV-----PTEYGIR 168 (346)
T ss_pred ccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC-----CCCCcEE
Confidence 4689999999963 57899999999974 39999999999999999999753 5789999
Q ss_pred EEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCCccc-ccChhHH-------HHHHHHHHhcCCCCCCccc
Q 010161 394 FCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFA-GATPQLD-------DILIEVTKMVKDPESESGT 465 (516)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~l~~-~~sP~l~-------~l~~~~~~~v~~p~~~~~~ 465 (516)
|+++++||.|+.||++|+++......++++++||+||++.+..+.+ .+...+. +.+.++++..+.+...
T Consensus 169 fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~--- 245 (346)
T PRK10199 169 FVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATT--- 245 (346)
T ss_pred EEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCcccc---
Confidence 9999999999999999999876655679999999999987743332 2222222 2244455443322110
Q ss_pred hhhhccCCCccccccCCCCCCCcHHHHHhcCCCeEEEeee
Q 010161 466 LYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYY 505 (516)
Q Consensus 466 l~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~l~~ 505 (516)
.+..........+.+|||+||.+ .|||++.+..
T Consensus 246 ------~~~~~~~~p~g~~~rSDH~~F~~-~GIP~l~~~a 278 (346)
T PRK10199 246 ------NPGLNKNYPKGTGCCNDAEVFDK-AGIPVLSVEA 278 (346)
T ss_pred ------CCCccccccCCCcCCcccHHHHh-cCCCeEEeec
Confidence 00000001122358999999999 7999999954
No 8
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.79 E-value=1.8e-19 Score=197.32 Aligned_cols=172 Identities=23% Similarity=0.292 Sum_probs=144.8
Q ss_pred eeEeEEEEEEcCcCCCCc-EEEEeecCCCCC--CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCc
Q 010161 329 ATIHNVFAVIRGLEEPNR-YVLLGNHRDAWT--YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI 405 (516)
Q Consensus 329 ~~~~NVi~~i~G~~~~~~-~viigaH~Ds~~--~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~ 405 (516)
..+.||+.+|.++..+++ .|++.||+||+. +||.|+|+|||+|||++|.+.+..+ ..+++|+|.++++||.++.
T Consensus 126 ~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~~L~ 202 (834)
T KOG2194|consen 126 QNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEESGLL 202 (834)
T ss_pred eeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccchhh
Confidence 567899999988876666 999999999997 6999999999999999999987532 2389999999999999999
Q ss_pred cHHHHHHHhhhcccccEEEEEEecccccC-CCcccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCC
Q 010161 406 GSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGG 484 (516)
Q Consensus 406 GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~l~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 484 (516)
||..|+.||+- .+++.+.||||.+|+| +...++++|.- .+++...+.+++|-. .++.+..++.. ...
T Consensus 203 gsH~FItQH~w--~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~--stlgee~Fq~g-------~Ip 270 (834)
T KOG2194|consen 203 GSHAFITQHPW--SKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFA--STLGEELFQSG-------IIP 270 (834)
T ss_pred hcccceecChh--hhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchh--hhhHHHhhhcC-------cCc
Confidence 99999999874 4789999999999998 77777788775 677777777888754 56666665542 235
Q ss_pred CCCcHHHHHhcCCCeEEEeeecCCCCcCccc
Q 010161 485 VDSDFASFVQHAGVPSVDMYYGKGLALVFYI 515 (516)
Q Consensus 485 ~~SD~~~F~~~~GIPs~~l~~~~~~p~YHt~ 515 (516)
+.+|+..|.++.|+|.+|+.+..+.-.|||.
T Consensus 271 SdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk 301 (834)
T KOG2194|consen 271 SDTDFRIFREYGHLPGLDMAFVKNGYVYHTK 301 (834)
T ss_pred cccchHHHHHhCCcccceeeeeeccceEEee
Confidence 8899999999999999999998888899973
No 9
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=178.38 Aligned_cols=163 Identities=28% Similarity=0.360 Sum_probs=116.7
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCC--CCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHH
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAW--TYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~--~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~ 408 (516)
..++.+.+.. ...+..+++++|+|++ .+||+||+||+|+|||+||.|+.. +|+|+|+|++|++||.||.||.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~ 268 (435)
T COG2234 195 SQIIEAIIGT-AHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSE 268 (435)
T ss_pred cccceEEEec-cCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccH
Confidence 3444444433 3468999999999994 469999999999999999999764 5999999999999999999999
Q ss_pred HHHHHhhhcccccEEEEEEecccccC---CCcccccC--hhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCC
Q 010161 409 EWVEENLVNLGAKAVAYLNVDCAVQG---PGFFAGAT--PQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLG 483 (516)
Q Consensus 409 ~~~~~~~~~~~~~~~a~inlD~~~~g---~~l~~~~s--P~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~ 483 (516)
+|+..+...+.+++.++||+||.+.. ..+...++ +.....+.+..+.+..+.. . ......
T Consensus 269 ~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~ 333 (435)
T COG2234 269 AYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVD-------P--------STVQDF 333 (435)
T ss_pred HHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhcc-------c--------cccCCC
Confidence 99998886666778889999999985 23333222 1222233333322211100 0 011223
Q ss_pred CCCCcHHHHHhcCCCeEEEeeecC-----CCCcCccc
Q 010161 484 GVDSDFASFVQHAGVPSVDMYYGK-----GLALVFYI 515 (516)
Q Consensus 484 ~~~SD~~~F~~~~GIPs~~l~~~~-----~~p~YHt~ 515 (516)
..+|||+||.. .|||++.+.... ..+++||.
T Consensus 334 ~~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~ 369 (435)
T COG2234 334 DPRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTA 369 (435)
T ss_pred CCCCcchhhhh-cCCcceeeeecCCcccccccccccc
Confidence 68999999998 799999998753 34688875
No 10
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.59 E-value=9.3e-15 Score=129.78 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=82.3
Q ss_pred ccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCc--ccchhHHHHHHHcCCeEEEEeecCCCcCCCc
Q 010161 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV--LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (516)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~--~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~ 233 (516)
.++||++++++|++||+++|+.+||+ +++++|||||++++.+ . +.+|+++|+++||+|||+|++....
T Consensus 14 ~~~~s~~~~~~~~lV~~g~G~~~d~~-----~~~v~GkIvlv~~g~~~~~-~~~k~~~A~~~GA~avi~~~~~~g~---- 83 (127)
T cd04819 14 ALPRSPSGEAKGEPVDAGYGLPKDFD-----GLDLEGKIAVVKRDDPDVD-RKEKYAKAVAAGAAAFVVVNTVPGV---- 83 (127)
T ss_pred EcCCCCCCCeeEEEEEeCCCCHHHcC-----CCCCCCeEEEEEcCCCchh-HHHHHHHHHHCCCEEEEEEeCCCCc----
Confidence 36788999999999999999999997 7899999999999988 5 7899999999999999999754210
Q ss_pred ceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 234 v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
+ +.++.|... ....+.||++.|+.+++++|+++++.
T Consensus 84 ~-----------~~~~~~~~~-------------~~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 84 L-----------PATGDEGTE-------------DGPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred C-----------ccccccccc-------------CCCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 0 112221100 01235799999999999999999863
No 11
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.5e-12 Score=122.55 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=135.1
Q ss_pred CCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCCceEEEEEEe-eeeeeeeEeEEEEEEcCcCCCCcEEE
Q 010161 271 FPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQ-GKKKVATIHNVFAVIRGLEEPNRYVL 349 (516)
Q Consensus 271 ~~~IP~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~g~~~~~v~l~~~-~~~~~~~~~NVi~~i~G~~~~~~~vi 349 (516)
++++|--+=+++..+-|.+.+..- +|.-.. +.... .-.......|+|+++... ..++.+
T Consensus 62 v~Rvpgs~g~~~vr~~i~~~l~~l----~w~ve~--------------~~f~~~tp~g~~~f~nii~tl~~~--A~r~lV 121 (338)
T KOG3946|consen 62 VPRVPGSPGSRQVRRFIIQHLRNL----GWAVET--------------DAFTDNTPLGTRNFNNLIATLDPN--ASRYLV 121 (338)
T ss_pred ccccCCCCccHHHHHHHHHHHHhc----Cceeee--------------ccccccCcceeeeeeeEEEecCCC--cchhee
Confidence 466777777888888888777532 343221 11111 112345678999999776 579999
Q ss_pred EeecCCCCC------CCCCCCchHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeCCCcC--------CCccHHHHHHHh
Q 010161 350 LGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMR-LGWSPRRTIIFCSWDAEEF--------GMIGSTEWVEEN 414 (516)
Q Consensus 350 igaH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~-~g~~p~r~i~f~~~~~eE~--------gl~GS~~~~~~~ 414 (516)
+.||||+.. .||.|.+.-||+||++||++.+... .--++.-++..+||+|||. .+.||++.++++
T Consensus 122 lachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~ 201 (338)
T KOG3946|consen 122 LACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKW 201 (338)
T ss_pred eecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHH
Confidence 999999975 3999999999999999999987653 2235678999999999973 479999999884
Q ss_pred hhc---------ccccEEEEEEecccccC-C---CcccccChhHHHHHHHHHHhcCCCCC-CccchhhhccCCCcccccc
Q 010161 415 LVN---------LGAKAVAYLNVDCAVQG-P---GFFAGATPQLDDILIEVTKMVKDPES-ESGTLYDQWSAPNRIFNIQ 480 (516)
Q Consensus 415 ~~~---------~~~~~~a~inlD~~~~g-~---~l~~~~sP~l~~l~~~~~~~v~~p~~-~~~~l~~~~~~~~~~~~~~ 480 (516)
... ..+++...+-+|..|.. . .+...++ .+-.-+.++..++..-.- ....+=-.++++..
T Consensus 202 ~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~-~wF~Rl~~iE~~l~~~g~l~s~r~~~~~Fq~~~----- 275 (338)
T KOG3946|consen 202 ESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTD-RWFHRLQSIEGELALLGLLASHRLPPRYFQPGG----- 275 (338)
T ss_pred hccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchH-HHHHHHHHHHHHHHHHHHHHhccCCchhccccC-----
Confidence 432 22445555556666654 1 1112221 111112222111100000 00000001111111
Q ss_pred CCCCCCCcHHHHHhcCCCeEEEeeecCCCCcCccc
Q 010161 481 RLGGVDSDFASFVQHAGVPSVDMYYGKGLALVFYI 515 (516)
Q Consensus 481 ~~~~~~SD~~~F~~~~GIPs~~l~~~~~~p~YHt~ 515 (516)
..+..++||.||++ .|||++.++..+...+|||+
T Consensus 276 ~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~ 309 (338)
T KOG3946|consen 276 LSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTP 309 (338)
T ss_pred ccccccCCcchhhh-cCCceEEecCCCCcccccCc
Confidence 11237889999999 59999999998777899986
No 12
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.36 E-value=1.4e-12 Score=116.16 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=62.1
Q ss_pred cccccccccCCCCCcceeEEEEcCCChhcHHHHHH-cCCcccCcEEEEEcCCcc-----------cchhHHHHHHHcCCe
Q 010161 151 DVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVL-----------SRSGVIFLAEAKGAI 218 (516)
Q Consensus 151 ~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~-~gv~v~GkIvlv~~g~~~-----------~~~~k~~~A~~~GA~ 218 (516)
+.+..+.+|+++|.++|+|||+|||+.++...+.+ .++|++|||||++.+.+. .++.|+++|+++||+
T Consensus 8 d~~~~~~~~~~~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~ 87 (137)
T cd04820 8 DLLIGASAAEPAASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAI 87 (137)
T ss_pred ceEeeccccCCCCCceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCe
Confidence 34556677889999999999999998643222222 289999999999998751 256899999999999
Q ss_pred EEEEeecCCC
Q 010161 219 GVLLYAEWDR 228 (516)
Q Consensus 219 gvIi~~dp~~ 228 (516)
|||+|+||.+
T Consensus 88 aVIi~~d~~~ 97 (137)
T cd04820 88 GMITLTTPRS 97 (137)
T ss_pred EEEEEeCCcc
Confidence 9999999864
No 13
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.31 E-value=9.8e-12 Score=109.62 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=77.9
Q ss_pred cccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcc
Q 010161 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGV 234 (516)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v 234 (516)
+|.+++++++++|+|||++++..+.-+.+...+.+++|||||+++|.|. +.+|+.+|+++||+|||+|++.... .
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~-f~~K~~~A~~aGA~avIi~n~~~~~----~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCP-FADKQKVAAARGAVAVIVVNNSDGG----G 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEeCCCCc----c
Confidence 4778899999999999998654221111111256899999999999998 8999999999999999999875311 0
Q ss_pred eeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 235 ERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 235 ~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
.+++-. + + .....||++.|+++++++|++.++
T Consensus 82 -------------~~~~~~-------~-~-----~~~~~iP~~~Is~~~G~~l~~~l~ 113 (122)
T cd04816 82 -------------TAGTLG-------A-P-----NIDLKVPVGVITKAAGAALRRRLG 113 (122)
T ss_pred -------------cccccc-------C-C-----CCCCeeeEEEEcHHHHHHHHHHHc
Confidence 111100 0 0 012359999999999999999985
No 14
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.30 E-value=1.9e-11 Score=107.85 Aligned_cols=99 Identities=27% Similarity=0.427 Sum_probs=77.1
Q ss_pred ccccCCCCCcceeEEEEc-CCC-hhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCc
Q 010161 156 YHAYSPSGSAYGKVVFVN-YGR-EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (516)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~-~G~-~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~ 233 (516)
.++|++.++++|+|||++ .|+ ++||. .+++|||||+++|.|. +.+|+++|+++||+|||+|++..+ +
T Consensus 13 ~~~~~~~~~~~g~lv~~~~~gC~~~~~~------~~~~gkIvlv~rg~c~-f~~K~~~A~~aGA~~vIv~n~~~~----~ 81 (122)
T cd02130 13 AFTYSPAGEVTGPLVVVPNLGCDAADYP------ASVAGNIALIERGECP-FGDKSALAGAAGAAAAIIYNNVPA----G 81 (122)
T ss_pred ecccCCCCCcEEEEEEeCCCCCCcccCC------cCCCCEEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCC----c
Confidence 478999999999999995 564 56764 3799999999999998 899999999999999999986521 0
Q ss_pred ceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 234 v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
. .++.++. .....||++.|+.++++.|++.++
T Consensus 82 ~------------~~~~~~~---------------~~~~~Ip~v~Is~~~G~~L~~~l~ 113 (122)
T cd02130 82 G------------LSGTLGE---------------PSGPYVPTVGISQEDGKALVAALA 113 (122)
T ss_pred c------------cccccCC---------------CCCCEeeEEEecHHHHHHHHHHHh
Confidence 0 1111110 012469999999999999999885
No 15
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.24 E-value=7.6e-11 Score=119.51 Aligned_cols=169 Identities=21% Similarity=0.174 Sum_probs=105.0
Q ss_pred EEEEEeeeeeeeeEeEEEEEEcCcCCCCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Q 010161 318 VNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (516)
Q Consensus 318 v~l~~~~~~~~~~~~NVi~~i~G~~~~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~ 397 (516)
.++.++++..+....-.--.|+|. .++.|++++|.||... ||||-||.++++++||.|+++ +++.|.||++.
T Consensus 104 Y~V~IdS~l~~G~L~ygE~~ipG~--s~~EillsthiCHPsm-ANdnLSG~~v~~~La~~L~~~-----~~rytYRflf~ 175 (386)
T PF09940_consen 104 YEVVIDSTLEDGSLTYGEFVIPGE--SDEEILLSTHICHPSM-ANDNLSGPAVLTFLAKWLKQL-----PNRYTYRFLFV 175 (386)
T ss_dssp EEEEEEEEEES-EEEEEEEEE--S--SS-EEEEEEE----S--TTTTHHHHHHHHHHHHHHTTS-------SSEEEEEEE
T ss_pred eEEEEeeeecCCceeEEEEEecCC--CCCeEEEEEeccCccc-ccccccHHHHHHHHHHHHhcC-----CcCceEEEEEc
Confidence 556667777666666667778996 5788999999999884 999999999999999999765 45689999999
Q ss_pred CCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCCcccccCh----hHHHHHHHHHHhcCCCCCCccchhhhccCC
Q 010161 398 DAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATP----QLDDILIEVTKMVKDPESESGTLYDQWSAP 473 (516)
Q Consensus 398 ~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~l~~~~sP----~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~ 473 (516)
. +-+||-.|+.++.+.+++++.+-++|.++|....+....|+ ..+.++..+.+....+ ..++
T Consensus 176 P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~----~~~~------ 241 (386)
T PF09940_consen 176 P----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPN----FKIY------ 241 (386)
T ss_dssp -----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-----EEEE------
T ss_pred c----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCC----ceEe------
Confidence 8 47999999999999987779999999999986554433332 4445555554443210 1111
Q ss_pred CccccccCCCCCCCcHHHHHhcCC--CeEEEeeec--CCCCcCcccC
Q 010161 474 NRIFNIQRLGGVDSDFASFVQHAG--VPSVDMYYG--KGLALVFYIL 516 (516)
Q Consensus 474 ~~~~~~~~~~~~~SD~~~F~~~~G--IPs~~l~~~--~~~p~YHt~~ 516 (516)
.+...|||..-|-. -| +|+..+.-. ..||-|||.+
T Consensus 242 -------~F~~~GsDERQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~ 280 (386)
T PF09940_consen 242 -------DFLPRGSDERQFCS-PGFDLPVGSLMRSKYGEYPEYHTSL 280 (386)
T ss_dssp ----------S-SSTHHHHTS-TTT---EEEEESS-TT--TTTTBTT
T ss_pred -------cccccCCCcceeec-CCcCCceeeeecccccCCcccccCC
Confidence 11236899999876 46 888887543 2699999975
No 16
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.24 E-value=1.5e-11 Score=111.52 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=56.1
Q ss_pred cccCCCCCcceeEEEEcCCChhc-HHHHHHcCCcccCcEEEEEcCCc--------c---------cchhHHHHHHHcCCe
Q 010161 157 HAYSPSGSAYGKVVFVNYGREED-YRALEAAGVNVSGCVVMARKGSV--------L---------SRSGVIFLAEAKGAI 218 (516)
Q Consensus 157 ~a~s~~G~v~g~lVyv~~G~~~D-~~~L~~~gv~v~GkIvlv~~g~~--------~---------~~~~k~~~A~~~GA~ 218 (516)
.+++++|.++|+|||||||+.++ +......++||+|||||++.+.. + .++.|+++|+++||+
T Consensus 12 ~~~s~sg~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 12 FAFSRSGAVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred eccCCCCCceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 57788899999999999998532 22111238999999999976531 1 147899999999999
Q ss_pred EEEEeecCCC
Q 010161 219 GVLLYAEWDR 228 (516)
Q Consensus 219 gvIi~~dp~~ 228 (516)
|||+|+++.+
T Consensus 92 aVIv~~d~~~ 101 (151)
T cd04822 92 AVIVVNGPNS 101 (151)
T ss_pred EEEEEeCCcc
Confidence 9999999854
No 17
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.22 E-value=6.2e-11 Score=106.15 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=76.6
Q ss_pred ccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcc----cchhHHHHHHHcCCeEEEEeecCCCcCC
Q 010161 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL----SRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (516)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~----~~~~k~~~A~~~GA~gvIi~~dp~~~~~ 231 (516)
|.++.+.|.++|+||+++-|. .||. +.+++|||||+++|.|. ++.+|+++|+++||+|||||++..+.
T Consensus 27 ~~s~~~~g~~tg~lv~~g~~g-~d~~-----~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~-- 98 (139)
T cd04817 27 YASMPVTGSATGSLYYCGTSG-GSYI-----CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA-- 98 (139)
T ss_pred ccccccCCcceEEEEEccCCC-cccc-----CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC--
Confidence 455667899999999998666 4765 56899999999999874 26899999999999999999975221
Q ss_pred CcceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
+.+.+. +||+ .....||++.|++++++.|+++++
T Consensus 99 -g~~~~~----lg~~----------------------~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 99 -GLQNPF----LVDT----------------------NNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred -Cccccc----ccCC----------------------CCCceEeEEEeeHHHHHHHHHHhc
Confidence 111110 1111 012469999999999999999885
No 18
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.18 E-value=4.2e-10 Score=109.85 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=108.0
Q ss_pred cEEEEeecCCCCC------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcc-
Q 010161 346 RYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNL- 418 (516)
Q Consensus 346 ~~viigaH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~- 418 (516)
++|++.|.+|+.. +||+.+.+|.++||++|++|+++...--+.+|+|+|++|.||.+|.+||+.|+.+.....
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5899999999865 599999999999999999999884322256899999999999999999999998765322
Q ss_pred -----------cccEEEEEEecccccCC--Ccccc--c---C---hhHHHHHHHHHHhcCCCCCCccchhhhccCCCccc
Q 010161 419 -----------GAKAVAYLNVDCAVQGP--GFFAG--A---T---PQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIF 477 (516)
Q Consensus 419 -----------~~~~~a~inlD~~~~g~--~l~~~--~---s---P~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~ 477 (516)
.++|..+|.++.+|... .+++. . . ..+.+++..+.+.... ....+. ...
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~---~~~~~~----~~~--- 150 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLAS---SNIVIK----KAS--- 150 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccc---ccccee----ccc---
Confidence 14788899999988763 35543 1 1 1334444444433211 101110 000
Q ss_pred cccCCCCCCCcHHHHHhcC-CCeEEEeeec---CCCCcCcccC
Q 010161 478 NIQRLGGVDSDFASFVQHA-GVPSVDMYYG---KGLALVFYIL 516 (516)
Q Consensus 478 ~~~~~~~~~SD~~~F~~~~-GIPs~~l~~~---~~~p~YHt~~ 516 (516)
..... -.-|-...|++.- +||++-|.-. ..+++||+.+
T Consensus 151 ~~~~~-LPPsS~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~ 192 (234)
T PF05450_consen 151 SSNPP-LPPSSLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSIL 192 (234)
T ss_pred cCCCC-CCcchHHHHHccCCCCCEEEecCCCcccccCCccCcc
Confidence 00001 1234588899854 6999988643 2479999875
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.15 E-value=1.5e-10 Score=105.05 Aligned_cols=93 Identities=25% Similarity=0.326 Sum_probs=75.5
Q ss_pred CCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeece
Q 010161 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (516)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v 239 (516)
++.+.+++++||+++|+.+||. +.+++|||||+++|.|. +.+|+.+|+++||+|||+|++.... ..
T Consensus 21 ~~~~~~~~~lv~~g~g~~~d~~-----~~dv~GkIvL~~rg~c~-~~~K~~~a~~aGA~gvIi~n~~~~~----~~---- 86 (143)
T cd02133 21 TDLLGKTYELVDAGLGTPEDFE-----GKDVKGKIALIQRGEIT-FVEKIANAKAAGAVGVIIYNNVDGL----IP---- 86 (143)
T ss_pred CCCCCcEEEEEEccCCchhccC-----CCCccceEEEEECCCCC-HHHHHHHHHHCCCeEEEEeecCCCc----cc----
Confidence 4557889999999999999987 56899999999999987 8999999999999999999876211 00
Q ss_pred eccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 240 ~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
..+ .....||++.|++++++.|++.+.
T Consensus 87 -------~~~-------------------~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 87 -------GTL-------------------GEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred -------ccC-------------------CCCCeEeEEEecHHHHHHHHHHHh
Confidence 000 011358999999999999999885
No 20
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.11 E-value=2.8e-10 Score=115.79 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=96.5
Q ss_pred eeeeEeEEEEEEc-Cc-----CCCCcEEEEeecCCCCC------CCCCCCchHHHHHHHHHHHHHHHHH-cCCCCCCcEE
Q 010161 327 KVATIHNVFAVIR-GL-----EEPNRYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMR-LGWSPRRTII 393 (516)
Q Consensus 327 ~~~~~~NVi~~i~-G~-----~~~~~~viigaH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~-~g~~p~r~i~ 393 (516)
...++.||.|.+. |- .+.-+.|+|.||||..+ .||+-||||+++|||+||.|+++.. ..-+++.+++
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 3568899999997 32 22457999999999876 4999999999999999999999973 2357789999
Q ss_pred EEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC-CCccc
Q 010161 394 FCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFFA 439 (516)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~l~~ 439 (516)
|++.+|.-++..|++.|++-....+++++...|++|.+|++ .+|+.
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~m 315 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFM 315 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEE
Confidence 99999999999999999997777788899999999999998 66653
No 21
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.11 E-value=3.2e-10 Score=96.00 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=68.0
Q ss_pred CCCCCcceeEEEEcCCChhcHHHHH-HcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeec
Q 010161 160 SPSGSAYGKVVFVNYGREEDYRALE-AAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGT 238 (516)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~ 238 (516)
|+.|.++++||+.+++...+..... ..+.+++|||||+++|.+. +.+|+.+|+++||+||||++.+.... .
T Consensus 1 ~~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~-~~~k~~~a~~~GA~gvIi~~~~~~~~---~---- 72 (101)
T PF02225_consen 1 SPSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCS-FDDKVRNAQKAGAKGVIIYNPPPNNG---S---- 72 (101)
T ss_dssp ---EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSC-HHHHHHHHHHTTESEEEEE-TSCSCT---T----
T ss_pred CCCCCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCC-HHHHHHHHHHcCCEEEEEEeCCcccc---C----
Confidence 5678889999976665544333332 2467899999999999998 89999999999999999999221100 0
Q ss_pred eeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhc
Q 010161 239 VMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSL 291 (516)
Q Consensus 239 v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l 291 (516)
.+ . +.. .....||++.|+++++++|++.+
T Consensus 73 ------~~-~----------~~~-------~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 73 ------MI-D----------SED-------PDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp ------TT-C----------EBT-------TTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ------cc-c----------ccC-------CCCcEEEEEEeCHHHHhhhhccC
Confidence 00 0 000 12246999999999999999763
No 22
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=99.10 E-value=1.5e-10 Score=103.93 Aligned_cols=65 Identities=29% Similarity=0.395 Sum_probs=54.6
Q ss_pred ccCCCCCcceeEEEEcCCCh------hcHHHHHHcCCcccCcEEEEEcCCcc-----------------cchhHHHHHHH
Q 010161 158 AYSPSGSAYGKVVFVNYGRE------EDYRALEAAGVNVSGCVVMARKGSVL-----------------SRSGVIFLAEA 214 (516)
Q Consensus 158 a~s~~G~v~g~lVyv~~G~~------~D~~~L~~~gv~v~GkIvlv~~g~~~-----------------~~~~k~~~A~~ 214 (516)
..+.++.++++||||+||.. +||+ ++|++|||||+..|.+. .+..|+++|++
T Consensus 13 ~~~~~~~~~aelVfvGyGi~a~~~~~dDYa-----g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~ 87 (142)
T cd04814 13 NVDAVAIKDAPLVFVGYGIKAPELSWDDYA-----GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAAR 87 (142)
T ss_pred CCCCccccceeeEEecCCcCCCCCChhhcC-----CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHH
Confidence 45677889999999999965 4666 89999999999988651 14579999999
Q ss_pred cCCeEEEEeecCC
Q 010161 215 KGAIGVLLYAEWD 227 (516)
Q Consensus 215 ~GA~gvIi~~dp~ 227 (516)
+||+|||+++++.
T Consensus 88 ~GA~gvIii~~~~ 100 (142)
T cd04814 88 HGAAGVLIVHELA 100 (142)
T ss_pred CCCcEEEEEeCCC
Confidence 9999999999873
No 23
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.08 E-value=1.1e-09 Score=98.02 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=72.4
Q ss_pred ccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCc------ccchhH-------HHHHHHcCCeEEEE
Q 010161 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV------LSRSGV-------IFLAEAKGAIGVLL 222 (516)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~------~~~~~k-------~~~A~~~GA~gvIi 222 (516)
|.+.++.++++|++|+++ +.++++++ ...+++|||||+..+.| . ++.| .+.|+++||+|+|+
T Consensus 8 ~s~~t~~~gvta~vv~v~--~~~~~~~~--~~~~v~GKIvlv~~~~~~~~~~~~-~~~k~~~r~~~~~~A~~~GA~avIv 82 (134)
T cd04815 8 GSVATPPEGITAEVVVVK--SFDELKAA--PAGAVKGKIVFFNQPMVRTQTGSG-YGPTVAYRRRGAVEAAKKGAVAVLI 82 (134)
T ss_pred CCCCCCCCCcEEEEEEEC--CHHHHHhc--chhhcCCeEEEecCCccccCchhh-cCchhhhhhHHHHHHHhCCCEEEEE
Confidence 445566678999999996 33333332 14589999999999888 4 5666 79999999999999
Q ss_pred eecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 223 YAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 223 ~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
++...... .. +.+..| +.. ...+.||++.|+.+++..|.+.++.
T Consensus 83 ~s~~~~~~--~~-----------~~~G~~-------~~~-------~~~~~IP~v~is~ed~~~L~r~l~~ 126 (134)
T cd04815 83 RSIGTDSH--RS-----------PHTGMM-------SYD-------DGVPKIPAAAISVEDADMLERLAAR 126 (134)
T ss_pred EecCcccC--CC-----------CcCCcc-------ccC-------CCCCCCCEEEechhcHHHHHHHHhC
Confidence 98531100 00 001111 010 1235699999999999999998863
No 24
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.91 E-value=7.4e-09 Score=91.15 Aligned_cols=97 Identities=29% Similarity=0.440 Sum_probs=73.7
Q ss_pred CCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeece
Q 010161 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (516)
Q Consensus 160 s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v 239 (516)
.+.+.+.++++++++|++ |+. +.+++|||||+++|.+. +..|+.+|+++||+||||++++.+.. ..
T Consensus 21 ~~~~~~~~~~~~C~~~~~-~~~-----~~~~~GkIvl~~~g~~~-~~~k~~~a~~~GA~gvii~~~~~~~~---~~---- 86 (126)
T cd00538 21 SPVGVVAGPLVGCGYGTT-DDS-----GADVKGKIVLVRRGGCS-FSEKVKNAQKAGAKAVIIYNNGDDPG---PQ---- 86 (126)
T ss_pred CCccccccceEEEecCcc-ccc-----CCCccceEEEEECCCcC-HHHHHHHHHHCCCEEEEEEECCCCcc---cc----
Confidence 456778999999999987 544 56899999999999887 89999999999999999998863110 00
Q ss_pred eccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 240 ~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
...|. .. .....||++.|+.+++++|++.+.
T Consensus 87 --------~~~~~-------~~-------~~~~~iP~~~is~~~g~~l~~~~~ 117 (126)
T cd00538 87 --------MGSVG-------LE-------STDPSIPTVGISYADGEALLSLLE 117 (126)
T ss_pred --------ccccc-------CC-------CCCCcEeEEEeCHHHHHHHHHHHh
Confidence 00000 00 012459999999999999999985
No 25
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.86 E-value=1.3e-08 Score=93.13 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=68.0
Q ss_pred CcceeEEEEcCCChh------cHHHHHHcCCcccCcEEEEEcCCcc------------------cchhHHHHHHHcCCeE
Q 010161 164 SAYGKVVFVNYGREE------DYRALEAAGVNVSGCVVMARKGSVL------------------SRSGVIFLAEAKGAIG 219 (516)
Q Consensus 164 ~v~g~lVyv~~G~~~------D~~~L~~~gv~v~GkIvlv~~g~~~------------------~~~~k~~~A~~~GA~g 219 (516)
.++++||||+||..+ ||+ ++||+|||||+..+... ....|+..|+++||+|
T Consensus 21 ~~~~elVFvGyGi~ape~~~dDy~-----g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~g 95 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEYGWDDYK-----GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAG 95 (157)
T ss_pred cccCCEEEeccCccCcccCccccc-----CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeE
Confidence 358999999999753 565 89999999999966531 0125999999999999
Q ss_pred EEEeecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCce-eecCHHHHHHHHHhcC
Q 010161 220 VLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPS-LPLSFENAQIILGSLW 292 (516)
Q Consensus 220 vIi~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~-~~Is~~~a~~ll~~l~ 292 (516)
||++.++.... ..+.+ ....|.. +++.+... ...-+.+++ .+|+.+.|++|++..+
T Consensus 96 vi~v~~~~~~~-~~~~~----------~~~~~~~----~~~~~~~~--~~~~~~~~~~~~is~~~A~~lf~~ag 152 (157)
T cd04821 96 ALIVHETEPAS-YGWSV----------VQSSWTG----EQFDLVRA--NPGAPRVKVEGWIQRDAAVKLFALAG 152 (157)
T ss_pred EEEEeCCCccc-CChhh----------hccccCC----CceEeecc--cccCCCceEEEEECHHHHHHHHHhcC
Confidence 99998863211 01110 1111211 11221110 012345565 4799999999998754
No 26
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.79 E-value=1.6e-08 Score=107.29 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=70.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCC-----C
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----M 404 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~g-----l 404 (516)
.-|++|.++|.+...+.|++|+|+|++.. |.-|+..|+++.||++|.|++ .|.+|+|+|.+++|..||.+ +
T Consensus 55 ~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~---~~~~~~~~i~vi~~~~EEg~rf~~~~ 131 (406)
T TIGR03176 55 VGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKE---KYGAPLRTVEVLSMAEEEGSRFPYVF 131 (406)
T ss_pred CCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEeccccCccCCccc
Confidence 36999999998755689999999999987 678999999999999998865 46789999999999999986 9
Q ss_pred ccHHHHHH
Q 010161 405 IGSTEWVE 412 (516)
Q Consensus 405 ~GS~~~~~ 412 (516)
+||+.|.-
T Consensus 132 ~Gs~~~~g 139 (406)
T TIGR03176 132 WGSKNIFG 139 (406)
T ss_pred ccHHHHhC
Confidence 99999883
No 27
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.79 E-value=2.1e-08 Score=87.56 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCccccccccc
Q 010161 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (516)
Q Consensus 187 gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~ 266 (516)
..+++|||+|+++|.|. +.+|+.+|+++||+|||||++..... . .+ ..|+
T Consensus 40 ~~~l~gkIaLV~RG~Cs-F~~K~~~Aq~aGA~aVII~nn~~~~~---~-~~----~~~~--------------------- 89 (120)
T cd02129 40 PGGLKGKAVVVMRGNCT-FYEKARLAQSLGAEGLLIVSRERLVP---P-SG----NRSE--------------------- 89 (120)
T ss_pred ccccCCeEEEEECCCcC-HHHHHHHHHHCCCCEEEEEECCCCCC---C-CC----CCCC---------------------
Confidence 35799999999999998 99999999999999999999863110 0 00 0000
Q ss_pred ccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 267 VSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 267 ~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
.....||++.|++++++.|++.++
T Consensus 90 --~~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 90 --YEKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred --CcCCcccEEEEeHHHHHHHHHHhc
Confidence 012369999999999999998875
No 28
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.73 E-value=4.3e-08 Score=86.88 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=68.0
Q ss_pred CcceeEEEEc--CCChh-cHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeecee
Q 010161 164 SAYGKVVFVN--YGREE-DYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVM 240 (516)
Q Consensus 164 ~v~g~lVyv~--~G~~~-D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~ 240 (516)
.+.|+||.+. +|+.+ ++ ..+++|||||+++|.|. +.+|+++|+++||+|||+|++...... .
T Consensus 16 ~~~g~l~~~~p~~gC~~~~~------~~~~~gkIaLv~RG~C~-f~~K~~~Aq~aGA~avII~n~~~~~~~-~------- 80 (126)
T cd02126 16 AGVGRVVKAKPYRACSEITN------AEEVKGKIAIMERGDCM-FVEKARRVQKAGAIGGIVIDNNEGSSS-D------- 80 (126)
T ss_pred CceEEEEeCCchhcccCCCC------ccccCceEEEEECCCCc-HHHHHHHHHHCCCcEEEEEECCCCccc-c-------
Confidence 4678999884 66632 22 23689999999999998 999999999999999999976421100 0
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 241 RGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 241 ~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
..+..+-|... .......||++.|+.++++.|++.+..
T Consensus 81 ---~~~~~~m~~~~------------~~~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 81 ---TAPMFAMSGDG------------DSTDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred ---ccceeEeecCC------------CCCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 00000000000 000124699999999999999998853
No 29
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.66 E-value=1.6e-07 Score=84.67 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCcceeEEEEc--CCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeecee
Q 010161 163 GSAYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVM 240 (516)
Q Consensus 163 G~v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~ 240 (516)
+.++++++.++ .|+.. +. -+++||||||++|.|. +.+|+++|+++||+|||||++.... ..
T Consensus 36 ~~~~~~lv~~~~~~gC~~-~~------~~~~g~IvLV~RG~C~-F~~K~~nA~~aGA~avIv~n~~~~~----~~----- 98 (139)
T cd02132 36 NANKTRAVLANPLDCCSP-ST------SKLSGSIALVERGECA-FTEKAKIAEAGGASALLIINDQEEL----YK----- 98 (139)
T ss_pred CccEEEEEECCcccccCC-CC------cccCCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECCCcc----cc-----
Confidence 56788999875 55532 21 3789999999999998 9999999999999999999865211 00
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 241 RGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 241 ~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
..+|+.. ......||++.|++++++.|++.+.
T Consensus 99 -------~~~~~~~-------------~~~~~~IP~v~Is~~~G~~L~~~l~ 130 (139)
T cd02132 99 -------MVCEDND-------------TSLNISIPVVMIPQSAGDALNKSLD 130 (139)
T ss_pred -------cccCCCC-------------CCCCCcEeEEEecHHHHHHHHHHHH
Confidence 0001000 0012469999999999999999985
No 30
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.64 E-value=8.9e-08 Score=101.44 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=68.2
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----CCc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----gl~ 405 (516)
.||+|+++|...+.+.|++++|+|+++. |..|+..|++++|++++.|++ .|.+|+++|.|++|.+||. |++
T Consensus 54 ~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~---~g~~~~~~i~~~~~~dEE~~~f~~~~~ 130 (401)
T TIGR01879 54 GNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKE---AYVVPLHPIEVVAFTEEEGSRFPYGMW 130 (401)
T ss_pred CcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCcCcCcccccc
Confidence 5999999987533489999999999986 678999999999999998754 5778999999999999997 789
Q ss_pred cHHHHHH
Q 010161 406 GSTEWVE 412 (516)
Q Consensus 406 GS~~~~~ 412 (516)
||+.|+.
T Consensus 131 Gs~~~~~ 137 (401)
T TIGR01879 131 GSRNMVG 137 (401)
T ss_pred cHHHHhc
Confidence 9999875
No 31
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.60 E-value=2.4e-07 Score=84.89 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred CCCCcceeEEEEc--CCCh-hcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceee
Q 010161 161 PSGSAYGKVVFVN--YGRE-EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERG 237 (516)
Q Consensus 161 ~~G~v~g~lVyv~--~G~~-~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg 237 (516)
+.+.++|.|+.+. .|+. .++..+ ...++.|||||+++|.|. +.+|+++|+++||+|||||++..+.. ..
T Consensus 36 ~~~~~~g~lv~~~p~~gC~~~~~~~~--~~~~~~g~IvLV~RG~Ct-F~~Kv~nAq~aGA~avII~n~~~~~~---~~-- 107 (153)
T cd02123 36 PGSGLKGVLVVAEPLNACSPIENPPL--NSNASGSFIVLIRRGNCS-FETKVRNAQRAGYKAAIVYNDESNDL---IS-- 107 (153)
T ss_pred CCCceEEEEEeCCccccCCCCccccc--ccccCCCeEEEEECCCCC-HHHHHHHHHHCCCCEEEEEECCCCcc---ee--
Confidence 3567899999873 3442 222100 125789999999999998 99999999999999999998752110 00
Q ss_pred ceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 238 TVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 238 ~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
+ .++.. + .....||++.|+.++++.|.+.+..
T Consensus 108 --m--~~~~~-------------~-------~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 108 --M--SGNDQ-------------E-------IKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred --c--cCCCC-------------C-------CcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 0 01100 0 0123699999999999999988853
No 32
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=2.7e-07 Score=80.78 Aligned_cols=96 Identities=22% Similarity=0.163 Sum_probs=65.3
Q ss_pred cceeEEEEc--CCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceecc
Q 010161 165 AYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRG 242 (516)
Q Consensus 165 v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~ 242 (516)
+.++||.+. .|+.. ... ..+++|||+|+++|.|. +.+|+.+|+++||+|||||++..+.....+..
T Consensus 11 ~~~~lv~~~p~~gC~~-~~~----~~~~~g~I~Lv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m------ 78 (118)
T cd02127 11 KHVPLVPADPLEACEE-LRN----IHDINGNIALIERGGCS-FLTKAINAQKAGALAVIITDVNNDSDEYYVEM------ 78 (118)
T ss_pred cceEEEECCccccCCC-CCC----ccccCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCCccccceEe------
Confidence 456777764 45432 110 23789999999999998 99999999999999999998653210000000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 243 VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 243 ~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
.++. + .....||++.|+.++++.|++.+..
T Consensus 79 ~~~~-~--------------------~~~i~IP~v~Is~~dG~~L~~~l~~ 108 (118)
T cd02127 79 IQDD-S--------------------SRRADIPAAFLLGKNGYMIRKTLER 108 (118)
T ss_pred cCCC-C--------------------CCCceEEEEEecHHHHHHHHHHHHc
Confidence 0110 0 0123699999999999999998853
No 33
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.55 E-value=1.8e-07 Score=103.79 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=69.9
Q ss_pred eEeEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----C
Q 010161 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----G 403 (516)
Q Consensus 330 ~~~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----g 403 (516)
..-||+|.++|.+...+.|++|+|+|++.. |.-|...|+++.||++|.|.+ .|.+|+++|.|+.|.+||. +
T Consensus 236 ~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~---~~~~~~~~i~vi~~~~EEg~rF~~~ 312 (591)
T PRK13799 236 AVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHE---QGERLPFHFEVIAFAEEEGQRFKAT 312 (591)
T ss_pred CCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCCccCCCcc
Confidence 338999999998655689999999999986 678888999999999998865 5789999999999999997 7
Q ss_pred CccHHHHH
Q 010161 404 MIGSTEWV 411 (516)
Q Consensus 404 l~GS~~~~ 411 (516)
++||+.|+
T Consensus 313 ~~GS~~~~ 320 (591)
T PRK13799 313 FLGSGALI 320 (591)
T ss_pred ccchHHHh
Confidence 99999997
No 34
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.52 E-value=2.5e-07 Score=102.72 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=66.9
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----CC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GM 404 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----gl 404 (516)
.-||+|.++|.+...+.|++|+|+|++.. |.-|+..|++++||++|.|.+ .|.+++++|.|++|.+||. ++
T Consensus 237 ~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~---~~~~~~~~i~vv~~~~EEg~rF~~~~ 313 (591)
T PRK13590 237 VGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHR---QGRRLPFGLEVVGFAEEEGQRYKATF 313 (591)
T ss_pred CCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCccccCCccc
Confidence 48999999997643478999999999987 568999999999999998865 4778889999999999997 58
Q ss_pred ccHHHH
Q 010161 405 IGSTEW 410 (516)
Q Consensus 405 ~GS~~~ 410 (516)
+||+.|
T Consensus 314 ~GS~~~ 319 (591)
T PRK13590 314 LGSGAL 319 (591)
T ss_pred cchHHH
Confidence 999964
No 35
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.46 E-value=1.6e-06 Score=77.94 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=67.5
Q ss_pred CCCCCcceeEEEEc-----CCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcc
Q 010161 160 SPSGSAYGKVVFVN-----YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGV 234 (516)
Q Consensus 160 s~~G~v~g~lVyv~-----~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v 234 (516)
++..++.|-||... .|+.. +... ....+++|+||||++|.|. +.+|+++|+++||+|||||++..... ..+
T Consensus 26 ~~~~~~~G~l~~~~~~~~~~gC~~-~~~~-~~~~~~~g~IaLV~RG~C~-F~~K~~nA~~aGA~aVIIyn~~~~~~-~~~ 101 (138)
T cd02122 26 SPKEEAKGLVVVPDPPNDHYGCDP-DTRF-PIPPNGEPWIALIQRGNCT-FEEKIKLAAERNASAVVIYNNPGTGN-ETV 101 (138)
T ss_pred CCCCccEEEEecCCCCCCcCCCCC-Cccc-cCCccCCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCCCC-cee
Confidence 66677888776442 34321 1100 0024689999999999998 99999999999999999998753100 000
Q ss_pred eeeceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 235 ERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 235 ~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
. ++. .....||++.|+..+|+.|++.+.
T Consensus 102 ~-------m~~-----------------------~~~~~ip~v~Is~~~G~~l~~~l~ 129 (138)
T cd02122 102 K-------MSH-----------------------PGTGDIVAIMITNPKGMEILELLE 129 (138)
T ss_pred e-------ccC-----------------------CCCCcceEEEEcHHHHHHHHHHHH
Confidence 0 000 012358999999999999999885
No 36
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.45 E-value=1.5e-06 Score=77.11 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCcceeEEEEc---CCChhcHHHH---HHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCccee
Q 010161 163 GSAYGKVVFVN---YGREEDYRAL---EAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER 236 (516)
Q Consensus 163 G~v~g~lVyv~---~G~~~D~~~L---~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~r 236 (516)
+.+.|.|+|.- .|+. .+..- ++......+||||+++|.|. +.+|+++|+++||++||||++..+. -+..
T Consensus 9 ~~~~G~l~~~~~~~~gC~-~~~~~~~~~~~~~~~~~~IvLv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~---~~~m 83 (127)
T cd02125 9 GTLTGVVVYPKENRTGCK-EFDVFFKPKKSEPGRRPVILLLDRGGCF-FTLKAWNAQQAGAAAVLVADNVDEP---LLTM 83 (127)
T ss_pred CeeEEEEEecCCccccCC-CCcccccccccccCCCceEEEEECCCcC-HHHHHHHHHHCCCcEEEEEECCCCc---cccc
Confidence 45788888883 3432 11110 00012467899999999999 9999999999999999999864210 0100
Q ss_pred eceeccCCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 237 g~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
. ..++--+.++ .....||++.|+.++++.|++.+.
T Consensus 84 ~----~~~~~~~~~~-----------------~~~i~IP~v~Is~~~G~~L~~~l~ 118 (127)
T cd02125 84 D----TPEESGSADY-----------------IEKITIPSALITKAFGEKLKKAIS 118 (127)
T ss_pred c----Cccccccccc-----------------CCCceEeEEEECHHHHHHHHHHHh
Confidence 0 0000000010 012359999999999999999885
No 37
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.41 E-value=9.5e-07 Score=77.16 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=55.6
Q ss_pred CcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCcccccccccc
Q 010161 188 VNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEV 267 (516)
Q Consensus 188 v~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~ 267 (516)
.+++||||||++|.|. +.+|+++|+++||+|||||++.... ... .+ ..++.
T Consensus 36 ~~l~gkIvLV~RG~Cs-F~~K~~nAq~aGA~avII~n~~~~~---~~~---~m------~~~~~---------------- 86 (117)
T cd04813 36 AEIDGKVALVLRGGCG-FLDKVMWAQRRGAKAVIVGDDEPGR---GLI---TM------FSNGD---------------- 86 (117)
T ss_pred CCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCcc---cce---ec------ccCCC----------------
Confidence 4789999999999998 9999999999999999999865210 000 00 00000
Q ss_pred cCCCCCCceeecCHHHHHHHHHhcC
Q 010161 268 SKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 268 ~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
.....||++.|++++++.|.+.++
T Consensus 87 -~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 87 -TDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred -CCCcEEEEEEEcHHHHHHHHHhcc
Confidence 012469999999999999987765
No 38
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.39 E-value=9.6e-07 Score=93.93 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=66.8
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----CCc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----gl~ 405 (516)
.|++++++|...+.+.|++++|+|+++. |+.|+.+|+|++|++++.|.+ .+.+|+++|.|+++.+||. |++
T Consensus 61 ~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (414)
T PRK12890 61 GNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALRE---AGIRPPHPLEVIAFTNEEGVRFGPSMI 137 (414)
T ss_pred CcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEecccccccCCccc
Confidence 5999999886434578999999999986 578999999999999998864 4567889999999999997 678
Q ss_pred cHHHHHHH
Q 010161 406 GSTEWVEE 413 (516)
Q Consensus 406 GS~~~~~~ 413 (516)
||+.+.+.
T Consensus 138 G~~~~~~~ 145 (414)
T PRK12890 138 GSRALAGT 145 (414)
T ss_pred cHHHHHcc
Confidence 99877653
No 39
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.34 E-value=1.5e-06 Score=92.58 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=65.2
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCC-----Cc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~g-----l~ 405 (516)
.||++.++|.+...+.|++++|+|+++. |..|..+|++++|++++.|++ .|.+|+++|.|++|.+||.| +.
T Consensus 63 gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~---~~~~~~~~i~v~~~~dEE~~~f~~~~~ 139 (414)
T PRK12891 63 GNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALND---AGIETERPVDVVIWTNEEGSRFAPSMV 139 (414)
T ss_pred CCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEecccccCcCCcccc
Confidence 4999999987533478999999999986 568999999999999999865 46688999999999999985 57
Q ss_pred cHHHH
Q 010161 406 GSTEW 410 (516)
Q Consensus 406 GS~~~ 410 (516)
||..+
T Consensus 140 Gs~~~ 144 (414)
T PRK12891 140 GSGVF 144 (414)
T ss_pred cHHHH
Confidence 99755
No 40
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.32 E-value=9e-06 Score=76.18 Aligned_cols=143 Identities=24% Similarity=0.219 Sum_probs=91.6
Q ss_pred EEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCc-c
Q 010161 349 LLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI-G 406 (516)
Q Consensus 349 iigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~-G 406 (516)
++.+|+|.++ .|+.|+..|++++|.+++.|.+ .+.+++++|.|++..+||.|.. |
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~~~g 77 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKE---SGDDLPGNIIFLFTPDEEIGSIGG 77 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHH---TTTTCSSEEEEEEESTCCGTSTTH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHh---ccccccccccccccccccCCCcch
Confidence 5678888766 3999999999999999998865 3457899999999999999998 9
Q ss_pred HHHHHHHhhhcccccEEEEEEecccccCCCcccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCC
Q 010161 407 STEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVD 486 (516)
Q Consensus 407 S~~~~~~~~~~~~~~~~a~inlD~~~~g~~l~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 486 (516)
++.++++.... ..++...+..|....+. .....++.+.+.+.++.+++.. .. . ......++
T Consensus 78 ~~~l~~~~~~~-~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~---~-~~~~~~g~ 138 (189)
T PF01546_consen 78 AKHLLEEGAFF-GLHPDYVIIGEPTGKGG-VGSDNDPPLVQALQAAAQEVGG-------------EP---P-EPVASGGG 138 (189)
T ss_dssp HHHHHHHCEEE-EEEESEEEECECETTSE-EEHCTCHHHHHHHHHHHHHTTS-------------SE---E-EEEEESSS
T ss_pred hhhhhhhcccc-ccccccccccccccccc-ccccccHHHHHHHHHHHHHHhh-------------cc---c-cccceecc
Confidence 99998873110 01122222223222210 0122455566777777766431 00 0 00112467
Q ss_pred CcHHHHHh--cCCCeEEEeeecCCCCcCccc
Q 010161 487 SDFASFVQ--HAGVPSVDMYYGKGLALVFYI 515 (516)
Q Consensus 487 SD~~~F~~--~~GIPs~~l~~~~~~p~YHt~ 515 (516)
+|...|.+ .+|+|.+.+..+. ...|++
T Consensus 139 tD~~~~~~~~~~~~~~i~~G~~~--~~~H~~ 167 (189)
T PF01546_consen 139 TDAGFLAEVKGLGIPAIGFGPGG--SNAHTP 167 (189)
T ss_dssp STHHHHHCHHHTTEEEEEEESCE--ESTTST
T ss_pred ccchhhhhhhccccceeeeCCCC--CCCCCC
Confidence 89988874 4799999887653 555653
No 41
>PRK09133 hypothetical protein; Provisional
Probab=98.25 E-value=5.6e-06 Score=89.65 Aligned_cols=82 Identities=28% Similarity=0.340 Sum_probs=69.3
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
..||++.++|++ +.+.|++.+|+|.++ .|+.|+.+|+|++|++++.|.+ .+.+|
T Consensus 88 ~~nli~~~~g~~-~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~---~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGTD-PKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKR---EGFKP 163 (472)
T ss_pred ceeEEEEecCCC-CCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHh---cCCCC
Confidence 479999998875 346799999999753 2899999999999999887754 46678
Q ss_pred CCcEEEEEeCCCc-CCCccHHHHHHHhhh
Q 010161 389 RRTIIFCSWDAEE-FGMIGSTEWVEENLV 416 (516)
Q Consensus 389 ~r~i~f~~~~~eE-~gl~GS~~~~~~~~~ 416 (516)
+++|.|++...|| .|..|++.+++++..
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~ 192 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRD 192 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhh
Confidence 9999999999999 889999999987653
No 42
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.15 E-value=6.5e-06 Score=87.47 Aligned_cols=79 Identities=32% Similarity=0.442 Sum_probs=66.4
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCC-----Cc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~g-----l~ 405 (516)
.||+++++|...+.+.|++.+|+|.++. |..|+..|+|++|.+++.|.+ .+++++++|+|+++.+||.| +.
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~---~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLND---AGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEEccccccccccccc
Confidence 4999999886533578999999999875 557888999999999998865 45678899999999999986 88
Q ss_pred cHHHHHHH
Q 010161 406 GSTEWVEE 413 (516)
Q Consensus 406 GS~~~~~~ 413 (516)
|+..+.+.
T Consensus 140 G~~~~~~~ 147 (412)
T PRK12893 140 GSGVFTGA 147 (412)
T ss_pred cHHHHhCc
Confidence 99888754
No 43
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.13 E-value=7.9e-06 Score=86.92 Aligned_cols=79 Identities=30% Similarity=0.408 Sum_probs=65.9
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----CCc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----gl~ 405 (516)
.||+++++|.....+.|++.+|+|+++. |..|+..|+|+++.+++.|.+ .+++|+++|.|++...||. |+.
T Consensus 60 ~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g~~g~~~~ 136 (413)
T PRK09290 60 GNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNE---RGIRPRRPIEVVAFTNEEGSRFGPAML 136 (413)
T ss_pred CcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEcCCccccccCccc
Confidence 5999999875323578999999999976 567888999999999998864 4667889999999999998 578
Q ss_pred cHHHHHHH
Q 010161 406 GSTEWVEE 413 (516)
Q Consensus 406 GS~~~~~~ 413 (516)
|++.++++
T Consensus 137 G~~~~~~~ 144 (413)
T PRK09290 137 GSRVFTGA 144 (413)
T ss_pred cHHHHHcc
Confidence 99888754
No 44
>PRK07906 hypothetical protein; Provisional
Probab=98.12 E-value=9.9e-06 Score=86.48 Aligned_cols=82 Identities=28% Similarity=0.377 Sum_probs=68.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
..||+++++|.++..+.|++.+|+|.++ .|+.|+.+|++++|++++.|.+ .+.+|
T Consensus 51 ~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~---~~~~~ 127 (426)
T PRK07906 51 RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR---TGRRP 127 (426)
T ss_pred ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 4799999988654356899999999764 2889999999999999998864 45678
Q ss_pred CCcEEEEEeCCCcCC-CccHHHHHHHhh
Q 010161 389 RRTIIFCSWDAEEFG-MIGSTEWVEENL 415 (516)
Q Consensus 389 ~r~i~f~~~~~eE~g-l~GS~~~~~~~~ 415 (516)
+++|.|+++..||.| ..|++.+++++.
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHH
Confidence 899999999999986 469998887643
No 45
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.11 E-value=8.8e-06 Score=86.42 Aligned_cols=78 Identities=31% Similarity=0.471 Sum_probs=65.6
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcC-----CCc
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~-----gl~ 405 (516)
.|++++++|.. +.+.|++++|+|.++. |-.|+-.|+|++|++++.|.+ .|++|+++|.|+++..||. |+.
T Consensus 62 ~nl~a~~~g~~-~~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (412)
T PRK12892 62 GNVFGRLPGPG-PGPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNE---HGIATRHPLDVVAWCDEEGSRFTPGFL 137 (412)
T ss_pred CcEEEEecCCC-CCCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCcccccccCccc
Confidence 49999999865 3478999999999987 446777889999999887764 5778899999999999998 578
Q ss_pred cHHHHHHH
Q 010161 406 GSTEWVEE 413 (516)
Q Consensus 406 GS~~~~~~ 413 (516)
||+.++++
T Consensus 138 Gs~~~~~~ 145 (412)
T PRK12892 138 GSRAYAGR 145 (412)
T ss_pred cHHHHHcC
Confidence 99998853
No 46
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.07 E-value=1.5e-05 Score=84.68 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=67.4
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCc
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~ 391 (516)
..||+|+++|.. .+.|++.+|+|.++ .|+.|+.+|++++|++++.|.+. +.++.++
T Consensus 87 ~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~---~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQL---GFKDYGT 161 (410)
T ss_pred CCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHc---CCCCCCC
Confidence 369999998763 46799999999874 37789999999999999988653 4567789
Q ss_pred EEEEEeCCCcCCCccHHHHHHHhh
Q 010161 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 392 i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
|+|++..+||.|..|++.++++..
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh
Confidence 999999999999899999997643
No 47
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.05 E-value=1.6e-05 Score=69.55 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=63.4
Q ss_pred cceeEEEEc--CCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceecc
Q 010161 165 AYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRG 242 (516)
Q Consensus 165 v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~ 242 (516)
+.|++|... .++ ++... ..+++|||||++.+.+. +..|+.+|+++||+|+|||++..... .+.
T Consensus 17 ~~~~~~~~~~~~~C-~~~~~----~~~v~GkIvL~~rg~c~-f~~k~~~a~~aGA~gvIi~~~~~~~~--~~~------- 81 (118)
T cd04818 17 VLAGAAPASNTDGC-TAFTN----AAAFAGKIALIDRGTCN-FTVKVLNAQNAGAIAVIVANNVAGGA--PIT------- 81 (118)
T ss_pred eeEEEecCCccccc-CCCCc----CCCCCCEEEEEECCCCC-HHHHHHHHHHCCCeEEEEEECCCCCc--cee-------
Confidence 677777663 222 22221 24799999999999887 88999999999999999998753100 000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 243 VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 243 ~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
++++ .....||++.|++++++.|++.+.
T Consensus 82 ~~~~----------------------~~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 82 MGGD----------------------DPDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred ccCC----------------------CCCCEEeEEEecHHHHHHHHHHHh
Confidence 0110 011349999999999999999986
No 48
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.03 E-value=1.9e-05 Score=70.24 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=34.8
Q ss_pred cccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecC
Q 010161 189 NVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEW 226 (516)
Q Consensus 189 ~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp 226 (516)
+++||||||++|.|. +.+|+++|+++||+|||||++.
T Consensus 53 ~~~g~IaLv~rg~c~-f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 53 DLSGYIVLVRRGTCT-FATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred cccCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECC
Confidence 689999999999998 9999999999999999999865
No 49
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.02 E-value=1.6e-05 Score=83.28 Aligned_cols=78 Identities=26% Similarity=0.277 Sum_probs=65.3
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
.|+++.++|.. ..+.|++.+|+|+++. |+.|+.+|+|++|++++.|.+. +.++
T Consensus 52 ~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~---~~~~ 127 (375)
T TIGR01910 52 GKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREA---GIKP 127 (375)
T ss_pred cceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHc---CCCC
Confidence 36888888864 3468999999998653 6889999999999999988653 4567
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 389 RRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 389 ~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
+++|.|+++.+||.|..|+..++++
T Consensus 128 ~~~i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 128 NGNIILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred CccEEEEEEcCcccCchhHHHHHHc
Confidence 8899999999999999999999876
No 50
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.02 E-value=1.4e-05 Score=83.21 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=65.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC----------------CC----CCCchHHHHHHHHHHHHHHHHHcCCCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY----------------GA----IDPNSGTAALLDIARRYALLMRLGWSPRR 390 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~----------------Ga----~D~~sG~a~lle~ar~l~~~~~~g~~p~r 390 (516)
..|+++.++|+. +.+.|++.+|+|.++. |+ .|+.+|+|++|++++.|.+. + .|++
T Consensus 49 ~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~---~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTE---E-TPHG 123 (361)
T ss_pred CceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhc---C-CCCC
Confidence 479999998874 3478999999999763 44 68899999999999988652 3 4678
Q ss_pred cEEEEEeCCCcCCCccHHHHHHH
Q 010161 391 TIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 391 ~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
+|+|+++.+||.|..|++.+.+.
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999988754
No 51
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.00 E-value=1.6e-05 Score=70.05 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=55.1
Q ss_pred CcccCcEEEEEcCCc-ccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCccccccccc
Q 010161 188 VNVSGCVVMARKGSV-LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (516)
Q Consensus 188 v~v~GkIvlv~~g~~-~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~ 266 (516)
.+++|||||++++.+ . +..|+..|++.||+|+|++++..+.. . . .
T Consensus 48 ~~v~GkIVlc~~~~~~~-~~~k~~~~~~~GA~gvI~~~~~~~~~--~--------------~-----------~------ 93 (126)
T cd02120 48 SKVKGKIVLCDRGGNTS-RVAKGDAVKAAGGAGMILANDPTDGL--D--------------V-----------V------ 93 (126)
T ss_pred hhccccEEEEeCCCCcc-HHHHHHHHHHcCCcEEEEEecCCCCc--e--------------e-----------c------
Confidence 579999999999887 5 78999999999999999998763210 0 0 0
Q ss_pred ccCCCCCCceeecCHHHHHHHHHhcCC
Q 010161 267 VSKRFPKIPSLPLSFENAQIILGSLWG 293 (516)
Q Consensus 267 ~~~~~~~IP~~~Is~~~a~~ll~~l~g 293 (516)
.....||++.|++++++.|++.++.
T Consensus 94 --~~~~~iP~v~I~~~~g~~l~~y~~~ 118 (126)
T cd02120 94 --ADAHVLPAVHVDYEDGTAILSYINS 118 (126)
T ss_pred --ccccccceEEECHHHHHHHHHHHHc
Confidence 0012599999999999999999864
No 52
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.00 E-value=3.7e-05 Score=79.31 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=69.6
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
-++++.+++|+++...-|++.+|.|.++ .|+.|.-+-.++.||++|.|. .+|.+
T Consensus 74 ~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~---~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLK---ASGFK 150 (420)
T ss_pred eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHH---hcCCC
Confidence 7899999999987778999999999654 289999998899999988764 57899
Q ss_pred CCCcEEEEEeCCCcCC-CccHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFG-MIGSTEWVE 412 (516)
Q Consensus 388 p~r~i~f~~~~~eE~g-l~GS~~~~~ 412 (516)
|+|||...|-.+||.| ..|...+++
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999987 899999987
No 53
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.97 E-value=2.8e-05 Score=82.94 Aligned_cols=80 Identities=28% Similarity=0.305 Sum_probs=67.1
Q ss_pred eEEEEEEcCcCCC-CcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 332 HNVFAVIRGLEEP-NRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 332 ~NVi~~i~G~~~~-~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
.||+++++|+... .+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+++
T Consensus 63 ~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 139 (421)
T PRK08596 63 PNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE---AGIE 139 (421)
T ss_pred ceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH---cCCC
Confidence 6999999986421 25799999999732 2899999999999999998854 4667
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHh
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~~ 414 (516)
++++|.|++..+||.|..|+.+++++.
T Consensus 140 ~~~~v~~~~~~dEE~g~~G~~~~~~~~ 166 (421)
T PRK08596 140 LPGDLIFQSVIGEEVGEAGTLQCCERG 166 (421)
T ss_pred CCCcEEEEEEeccccCCcCHHHHHhcC
Confidence 889999999999999999999998764
No 54
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.97 E-value=6.1e-05 Score=76.34 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC------
Q 010161 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (516)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (516)
+.||-.||++|+|++|.+++. +.+.+++|++...||.|+.|++..+.+...+ ..|.+|..-..
T Consensus 132 alDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i~PD------~ai~vD~~~a~d~~~~~ 200 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRIKPD------IAIAVDVTPAGDTPGSD 200 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH-CS------EEEEEEEEEESSSTTST
T ss_pred eCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeecccccCCC------EEEEEeeeccCCCCCCc
Confidence 678999999999999987642 3358999999999999999999776654332 24566664321
Q ss_pred -C------C--cc-----cccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHh-cCCCe
Q 010161 435 -P------G--FF-----AGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAGVP 499 (516)
Q Consensus 435 -~------~--l~-----~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~GIP 499 (516)
. + +. .-.+|.+.+.+.+++++..-|-. + .....+++|-..|.. ..|||
T Consensus 201 ~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q--------~---------~~~~~ggTDa~~~~~~~~Gi~ 263 (292)
T PF05343_consen 201 EKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQ--------R---------EVFSGGGTDAGAIQLSGGGIP 263 (292)
T ss_dssp TTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EE--------E---------EEESSSSSTHHHHHTSTTSSE
T ss_pred hhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeE--------E---------EecCCcccHHHHHHHcCCCCC
Confidence 0 0 11 12356777888888887554421 0 011257889888754 23999
Q ss_pred EEEeeecCCCCcCccc
Q 010161 500 SVDMYYGKGLALVFYI 515 (516)
Q Consensus 500 s~~l~~~~~~p~YHt~ 515 (516)
++.++.- --+.||+
T Consensus 264 t~~i~iP--~ry~Hs~ 277 (292)
T PF05343_consen 264 TAVISIP--CRYMHSP 277 (292)
T ss_dssp EEEEEEE--EBSTTST
T ss_pred EEEEecc--cccCCCc
Confidence 9999873 3446664
No 55
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=97.95 E-value=4.5e-05 Score=80.46 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=66.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..|+++.++|.. +.+.|++.+|+|.++. |+.|+-.|++++|.+++.|.+ .+.+
T Consensus 63 ~~nl~~~~~g~~-~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~---~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGGD-GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMD---LGIR 138 (400)
T ss_pred CccEEEEecCCC-CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHH---hCCC
Confidence 489999998864 3458999999997652 688999999999998888764 3557
Q ss_pred CCCcEEEEEeCCCcCCCc-cHHHHHHHh
Q 010161 388 PRRTIIFCSWDAEEFGMI-GSTEWVEEN 414 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~-GS~~~~~~~ 414 (516)
++++|.|++..+||.|.. |+.++++++
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhc
Confidence 889999999999998874 888888763
No 56
>PRK13381 peptidase T; Provisional
Probab=97.83 E-value=6.2e-05 Score=79.84 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=64.5
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC------------------------------------------------CC-
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY------------------------------------------------GA- 361 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~------------------------------------------------Ga- 361 (516)
..||+|+++|+....+.|++.+|+|.++. |+
T Consensus 54 ~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~ 133 (404)
T PRK13381 54 HAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTS 133 (404)
T ss_pred CeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCcc
Confidence 35999999887532378999999998742 45
Q ss_pred ---CCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 362 ---IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 362 ---~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
.|+-+|+|++|.+++.|.+. + +++.+|.|++..+||.|..|+..++.+
T Consensus 134 ~~g~DmKgg~aa~l~a~~~l~~~---~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 134 VLGADNKAAIAVVMTLLENLTEN---E-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHhc---C-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 78889999999999988653 2 356799999999999998999998754
No 57
>PRK09104 hypothetical protein; Validated
Probab=97.82 E-value=7.8e-05 Score=80.58 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=66.8
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------------CCCCCCchHHHHHHHHHHHHHHHH
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------------YGAIDPNSGTAALLDIARRYALLM 382 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------------~Ga~D~~sG~a~lle~ar~l~~~~ 382 (516)
..||+++++|++...+.|++.+|+|.++ .|+.|+..|++++|++++.|.+.
T Consensus 68 ~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~- 146 (464)
T PRK09104 68 HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV- 146 (464)
T ss_pred CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh-
Confidence 3699999987543457899999999731 16799999999999999998764
Q ss_pred HcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 383 ~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
+-+++.+|.|++.+.||.|..|..+|+.+..
T Consensus 147 --~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 177 (464)
T PRK09104 147 --TGSLPVRVTILFEGEEESGSPSLVPFLEANA 177 (464)
T ss_pred --cCCCCCcEEEEEECccccCCccHHHHHHhhH
Confidence 2245678999999999999999999987643
No 58
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.82 E-value=7.2e-05 Score=79.97 Aligned_cols=80 Identities=26% Similarity=0.243 Sum_probs=65.2
Q ss_pred eEeEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCC
Q 010161 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (516)
Q Consensus 330 ~~~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (516)
...||++.++|.....+.|++.+|+|.++. |+.|+-+|++++|.+++.|.+ .|.
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~---~~~ 158 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA---AGL 158 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 358999999886433578999999997642 788999999999999887754 466
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHH
Q 010161 387 SPRRTIIFCSWDAEEFGMIGSTEWVE 412 (516)
Q Consensus 387 ~p~r~i~f~~~~~eE~gl~GS~~~~~ 412 (516)
+|+++|.|++...||.+..|+...+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHh
Confidence 78899999999999987778876654
No 59
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.81 E-value=0.00012 Score=76.16 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=65.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
..||++.+.|+. .+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+. +.
T Consensus 46 ~~nl~~~~~~~~--~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPSG--AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE-----QL 118 (364)
T ss_pred cccEEEEecCCC--CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc-----Cc
Confidence 579999996642 45799999999753 28999999999999999998753 24
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 389 ~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
+++|+|++..+||.|..|++.++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 678999999999999999999988764
No 60
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.81 E-value=0.00011 Score=78.45 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=63.8
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (516)
..|++|+++|.. +.+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+. +++++
T Consensus 71 ~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~---~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAV---YPDFA 146 (427)
T ss_pred cceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHh---CCCCC
Confidence 469999998864 357899999999753 28999999999999999988653 56778
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHH
Q 010161 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 390 r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
++|+|++..+||.|..|...|+.+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAE 170 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHh
Confidence 899999999999887655555543
No 61
>PRK07907 hypothetical protein; Provisional
Probab=97.80 E-value=0.00011 Score=79.07 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=65.4
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..||++.++|.. +.+.|++.+|+|.++ .|+.|+.+|+|++|.+++.| +.+
T Consensus 70 ~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l------~~~ 142 (449)
T PRK07907 70 APAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL------GGD 142 (449)
T ss_pred CCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh------ccC
Confidence 469999998753 357899999999753 28999999999999999987 235
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
++++|.|++.+.||.|..|+++++++..
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 170 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHP 170 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhch
Confidence 6789999999999999999999998753
No 62
>PRK07473 carboxypeptidase; Provisional
Probab=97.76 E-value=0.00012 Score=76.95 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=66.1
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC-------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~-------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i 392 (516)
.||++.++|.....+.|++.+|+|.+. .|+.|+-+|++++|.+++.|.+. +.+++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~---~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARA---GITTPLPI 138 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHc---CCCCCCCE
Confidence 589999976433346899999999652 28999999999999999988653 34456689
Q ss_pred EEEEeCCCcCCCccHHHHHHHhh
Q 010161 393 IFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 393 ~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
.|++..+||.|..|++.++++..
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEA 161 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhh
Confidence 99999999999999999998643
No 63
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.76 E-value=8.2e-05 Score=80.74 Aligned_cols=75 Identities=23% Similarity=0.105 Sum_probs=59.5
Q ss_pred eEEEEEEcCcC--CCCcEEEEeecCCCCCCC--------------------------C---CCCchHHHHHHHHHHHHHH
Q 010161 332 HNVFAVIRGLE--EPNRYVLLGNHRDAWTYG--------------------------A---IDPNSGTAALLDIARRYAL 380 (516)
Q Consensus 332 ~NVi~~i~G~~--~~~~~viigaH~Ds~~~G--------------------------a---~D~~sG~a~lle~ar~l~~ 380 (516)
.||++.++|.. +..+.|++.+|+|.++.| + .|+..|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~--- 123 (477)
T TIGR01893 47 GNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED--- 123 (477)
T ss_pred CeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---
Confidence 69999998753 234679999999987643 3 2999999999998663
Q ss_pred HHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 381 ~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
. ..+.++|.++++..||.|+.||+.+..+
T Consensus 124 ---~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 124 ---N-NLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred ---C-CCCCCCEEEEEEeccccCchhhhhcChh
Confidence 1 2356799999999999999999998754
No 64
>PRK08262 hypothetical protein; Provisional
Probab=97.74 E-value=0.00013 Score=79.39 Aligned_cols=79 Identities=28% Similarity=0.425 Sum_probs=66.0
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC-------------------------CCCCCCchHHHHHHHHHHHHHHHHHcCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------------YGAIDPNSGTAALLDIARRYALLMRLGW 386 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~-------------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (516)
.|+++.++|.+...+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+.
T Consensus 98 ~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~---~~~ 174 (486)
T PRK08262 98 HSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLA---QGF 174 (486)
T ss_pred ccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHH---cCC
Confidence 689999988753227899999999652 1899999999999999998865 355
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 387 SPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 387 ~p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
+++++|+|++..+||.|..|++++.+.
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHH
Confidence 678899999999999998899988865
No 65
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.73 E-value=0.00011 Score=77.07 Aligned_cols=77 Identities=30% Similarity=0.291 Sum_probs=64.2
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..|+++.+ |.. .+.|++.+|+|.++. |+.|+-.|++++|..++.|.+ .+.+
T Consensus 48 ~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 121 (377)
T PRK08588 48 RANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE---QGQL 121 (377)
T ss_pred CceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH---cCCC
Confidence 36999998 433 368999999997542 677999999999999998754 3567
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
++++|.|++..+||.|..|+..++++
T Consensus 122 ~~~~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 122 LNGTIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred CCCcEEEEEEcccccCchhHHHHHhc
Confidence 88999999999999999999999986
No 66
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.72 E-value=0.00013 Score=77.81 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=65.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..||+|+++|.. +.+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+++
T Consensus 80 ~~nlia~~~g~~-~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 155 (422)
T PRK06915 80 SPNIVATLKGSG-GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE---SGIE 155 (422)
T ss_pred CceEEEEEcCCC-CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH---cCCC
Confidence 489999998864 357899999999653 2888999999999998887754 3567
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
++.+|.|++..+||.|..|+...+++
T Consensus 156 ~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 156 LKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred CCCcEEEEEecccccCCcchHHHHhc
Confidence 77899999999999988898877664
No 67
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.64 E-value=0.00021 Score=75.69 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=65.2
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..|+++.++|+....+.|++.+|+|.++ .|+.|+-+|+|++|.+++.|.+ .+.+
T Consensus 57 ~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~---~~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKA---SGFK 133 (400)
T ss_pred ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHH---cCCC
Confidence 4699999988643236899999999753 1788999999999999998865 3556
Q ss_pred CCCcEEEEEeCCCcCCC-ccHHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFGM-IGSTEWVEE 413 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl-~GS~~~~~~ 413 (516)
++++|+|++..+||.|. .|+++++++
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 78999999999999875 699988865
No 68
>PRK07338 hypothetical protein; Provisional
Probab=97.64 E-value=0.00016 Score=76.59 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC-------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~-------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i 392 (516)
.||+++++|.. .+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+.+++++|
T Consensus 81 ~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~---~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFER---SPLADKLGY 155 (402)
T ss_pred CeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHh---cCCCCCCCE
Confidence 69999997653 23599999999764 1788999999999999998854 355677899
Q ss_pred EEEEeCCCcCCCccHHHHHHHhh
Q 010161 393 IFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 393 ~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
.|++..+||.|..|+..++++..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHh
Confidence 99999999999999999988754
No 69
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.63 E-value=0.00016 Score=76.91 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=60.9
Q ss_pred EeEEEEEEcCcCCC-CcEEEEeecCCCCCC-C------------------------------------------------
Q 010161 331 IHNVFAVIRGLEEP-NRYVLLGNHRDAWTY-G------------------------------------------------ 360 (516)
Q Consensus 331 ~~NVi~~i~G~~~~-~~~viigaH~Ds~~~-G------------------------------------------------ 360 (516)
.-||+|.++|.... .+.|++.||+|++.. |
T Consensus 57 ~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~ 136 (410)
T TIGR01882 57 NGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGT 136 (410)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCC
Confidence 68999999986431 278999999998651 1
Q ss_pred ---CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHH
Q 010161 361 ---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (516)
Q Consensus 361 ---a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~ 412 (516)
..|+-+|+|+||.+++.|.+.. + .++.+|+|++..+||.| .|++.+..
T Consensus 137 ~l~G~D~KgglAa~l~A~~~L~e~~--~-~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 137 TLLGADDKAGIAEIMTAADYLINHP--E-IKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EeecccCHHHHHHHHHHHHHHHhCC--C-CCCCCEEEEEECcccCC-cCcchhhh
Confidence 1577889999999999986631 2 35678999999999998 58887754
No 70
>PRK09961 exoaminopeptidase; Provisional
Probab=97.62 E-value=0.00036 Score=72.48 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=84.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCC----
Q 010161 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP---- 435 (516)
Q Consensus 360 Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~---- 435 (516)
-|-||-.||++++|++|.+++. +++.+++|++...||.|+.|++.-......+ ..|.+|+...+.
T Consensus 163 kalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~pd------~~I~vDv~~~~d~~~~ 231 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVSPD------VAIVLDTACWAKNFDY 231 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccCCC------EEEEEeccCCCCCCCC
Confidence 3679999999999999988542 4678999999999999999998765543322 267788754321
Q ss_pred ------------Cc-----ccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHh-cCC
Q 010161 436 ------------GF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAG 497 (516)
Q Consensus 436 ------------~l-----~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~G 497 (516)
.+ ..-..|.+.+.+.+++++...|-.. ....+++||-..|.. ..|
T Consensus 232 ~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~-----------------~~~~ggGTDa~~~~~~~~G 294 (344)
T PRK09961 232 GAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQA-----------------DMFSNGGTDGGAVHLTGTG 294 (344)
T ss_pred CCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEE-----------------EecCCCcchHHHHHHhCCC
Confidence 11 1123467777788888765533210 001135799988754 259
Q ss_pred CeEEEeeecCCCCcCccc
Q 010161 498 VPSVDMYYGKGLALVFYI 515 (516)
Q Consensus 498 IPs~~l~~~~~~p~YHt~ 515 (516)
||++.++... -+-||+
T Consensus 295 iptv~ig~p~--ry~Hs~ 310 (344)
T PRK09961 295 VPTVVMGPAT--RHGHCA 310 (344)
T ss_pred CCEEEechhh--hcccCh
Confidence 9999998752 245764
No 71
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.59 E-value=0.00022 Score=74.91 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=64.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
..||++.++|.. .+.|++.+|+|.++ .|+.|+-+|+|++|.+++.|.+. ++
T Consensus 52 ~~nv~a~~~~~~--~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 124 (385)
T PRK07522 52 KANLFATIGPAD--RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-----PL 124 (385)
T ss_pred cccEEEEeCCCC--CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC-----CC
Confidence 479999996652 46899999999642 28999999999999999988653 35
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHh
Q 010161 389 RRTIIFCSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 389 ~r~i~f~~~~~eE~gl~GS~~~~~~~ 414 (516)
+++|.|++..+||.|..|+..++++.
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHh
Confidence 67999999999999889999998754
No 72
>PRK07079 hypothetical protein; Provisional
Probab=97.58 E-value=0.00046 Score=74.73 Aligned_cols=82 Identities=18% Similarity=0.085 Sum_probs=67.4
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCC-------CC----C-------------CCCCCchHHHHHHHHHHHHHHHHHcCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDA-------WT----Y-------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds-------~~----~-------------Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (516)
-.||++.+.|.. +.+.|++.+|+|. |. + |+.|+-+|++++|.+++.|.+. .+.
T Consensus 72 ~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~--~~~ 148 (469)
T PRK07079 72 GPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA--RGG 148 (469)
T ss_pred CCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh--cCC
Confidence 479999986642 3468999999994 32 1 8999999999999999887532 245
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 387 ~p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
+++++|.|++...||.|..|+.++++++.
T Consensus 149 ~~~~~i~~~~~~dEE~g~~G~~~l~~~~~ 177 (469)
T PRK07079 149 RLGFNVKLLIEMGEEIGSPGLAEVCRQHR 177 (469)
T ss_pred CCCCCEEEEEECccccCCccHHHHHHHhH
Confidence 78899999999999999999999998764
No 73
>PRK05469 peptidase T; Provisional
Probab=97.57 E-value=0.00023 Score=75.57 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=63.6
Q ss_pred EeEEEEEEcCcC-CCCcEEEEeecCCCCCC------------------------------------------------CC
Q 010161 331 IHNVFAVIRGLE-EPNRYVLLGNHRDAWTY------------------------------------------------GA 361 (516)
Q Consensus 331 ~~NVi~~i~G~~-~~~~~viigaH~Ds~~~------------------------------------------------Ga 361 (516)
..||+|.++|+. ++.+.|++.+|+|.++. |+
T Consensus 55 ~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~ 134 (408)
T PRK05469 55 NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGT 134 (408)
T ss_pred CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCC
Confidence 358999998863 24588999999999831 44
Q ss_pred ----CCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 010161 362 ----IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 362 ----~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
.|+.+|+|++|.+++.|.+. +..++.+|+|++-.+||.| .|+..++.+
T Consensus 135 ~~lg~D~Kgglaa~l~a~~~l~~~---~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 135 TLLGADDKAGIAEIMTALEYLIAH---PEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred EeecccchHHHHHHHHHHHHHHhC---CCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 89999999999999988653 3356789999999999998 799887633
No 74
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.57 E-value=0.00049 Score=71.51 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC------
Q 010161 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (516)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (516)
|-||-.||++|+|++|.+.+. +++.++.|++..-||.|+.|++.-+.....+ ..|.+|+...+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD------~aI~vDv~~~~d~~~~~ 244 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFNPD------IFFAVDCSPAGDIYGDQ 244 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCCCC------EEEEEecCCcCCCCCCC
Confidence 558999999999999988642 4778999999999999999998644433222 46778865332
Q ss_pred -------CCc-----ccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHH--HHHhcCCCeE
Q 010161 435 -------PGF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFA--SFVQHAGVPS 500 (516)
Q Consensus 435 -------~~l-----~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~--~F~~~~GIPs 500 (516)
..+ ..-..|.+.+.+.+++++.+-|-. + ...++|+|-. -|.. .|||+
T Consensus 245 ~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q--------~----------~~~~gGtDa~~~~~~~-~Gvpt 305 (350)
T TIGR03107 245 GGKLGEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQ--------Y----------YVAKGGTDAGAAHLKN-SGVPS 305 (350)
T ss_pred ccccCCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcE--------E----------ecCCCCchHHHHHHhC-CCCcE
Confidence 112 122356777788888877554321 0 0112466766 4544 69999
Q ss_pred EEeeecCCCCcCccc
Q 010161 501 VDMYYGKGLALVFYI 515 (516)
Q Consensus 501 ~~l~~~~~~p~YHt~ 515 (516)
+.++.. .-+-||+
T Consensus 306 ~~i~ip--~Ry~Hs~ 318 (350)
T TIGR03107 306 TTIGVC--ARYIHSH 318 (350)
T ss_pred EEEccC--cccccCh
Confidence 999874 4556664
No 75
>PRK06446 hypothetical protein; Provisional
Probab=97.57 E-value=0.00039 Score=74.58 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=64.7
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
-.||++.+++. +.+.|++.+|+|.++ .|+.|+-+|++++|...+.|.+. + +
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~---~-~ 123 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDK---H-K 123 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHc---C-C
Confidence 47999999643 246799999999843 18999999999999998877532 2 4
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
++.+|.|++...||.|..|+.+|++++.
T Consensus 124 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 124 LNVNVKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred CCCCEEEEEEcccccCCHhHHHHHHHHH
Confidence 6779999999999999999999998754
No 76
>PRK08201 hypothetical protein; Provisional
Probab=97.56 E-value=0.00045 Score=74.52 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=66.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..||++.+.|.. +.+.|++.+|+|.++ .|+.|+-+|+|++|++++.|.+. +.+
T Consensus 66 ~~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~---~~~ 141 (456)
T PRK08201 66 HPIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV---EGT 141 (456)
T ss_pred CCEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh---cCC
Confidence 368999987642 356899999999832 18999999999999999988653 224
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
++++|.|++...||.|..|+.+|++++.
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhH
Confidence 5679999999999999999999998754
No 77
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=97.50 E-value=0.0003 Score=69.84 Aligned_cols=84 Identities=27% Similarity=0.237 Sum_probs=69.2
Q ss_pred EcCcCCCCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhc
Q 010161 338 IRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (516)
Q Consensus 338 i~G~~~~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~ 417 (516)
++|. .++.|++++|.+|.. =|+||-||.|++.-+|++|..+ +.+.+-||++-. +-+||-.|+.++.+.
T Consensus 173 ~rg~--~~~eiLlst~lCHPS-maNdn~SG~all~~lak~l~~~-----ktrysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 173 HRGT--SKDEILLSTYLCHPS-MANDNLSGLALLTFLAKALKSL-----KTRYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred ccCC--ccceeeeeecccChh-hccCccchHHHHHHHHHHHHhc-----cceeeEEEEecc----cccchhhhHhcchhH
Confidence 4666 567899999999976 4899999999999999999876 467889999876 358999999998877
Q ss_pred ccccEEEEEEecccccC
Q 010161 418 LGAKAVAYLNVDCAVQG 434 (516)
Q Consensus 418 ~~~~~~a~inlD~~~~g 434 (516)
+ +++..-+-+-+.|.|
T Consensus 241 l-khvk~GlVlsClGD~ 256 (435)
T COG4310 241 L-KHVKHGLVLSCLGDG 256 (435)
T ss_pred H-hhhhcceEEEEecCC
Confidence 6 477777777777765
No 78
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.48 E-value=0.00042 Score=75.06 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=63.3
Q ss_pred EEEEEEcCcCCCCcEEEEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCc
Q 010161 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (516)
Q Consensus 333 NVi~~i~G~~~~~~~viigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~ 391 (516)
|+++.+.+.. .++.|++.+|+|.++ .|+.|+-.|++++|..+++|++ .+.+++++
T Consensus 67 ~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~---~~~~~~~~ 142 (466)
T TIGR01886 67 NYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKE---LGLPPSKK 142 (466)
T ss_pred CCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHH---hCCCCCCC
Confidence 4445544332 357899999999752 2899999999999999887754 46678899
Q ss_pred EEEEEeCCCcCCCccHHHHHHHhh
Q 010161 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 392 i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
|+|++...||.|..|+.+|+++..
T Consensus 143 i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 143 IRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999998754
No 79
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.46 E-value=0.00056 Score=71.57 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=61.9
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..|+++++ |. +.+.|++.+|+|.++. |+.|+-+|++++|.+++.|.+ .+.+
T Consensus 47 ~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 120 (375)
T PRK13009 47 VKNLWARR-GT--EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVA---AHPD 120 (375)
T ss_pred CcEEEEEe-cC--CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHH---hcCC
Confidence 46999987 65 3578999999997542 677999999999999887754 3456
Q ss_pred CCCcEEEEEeCCCcCC-CccHHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFG-MIGSTEWVEE 413 (516)
Q Consensus 388 p~r~i~f~~~~~eE~g-l~GS~~~~~~ 413 (516)
++++|+|++..+||.+ ..|++.+++.
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~ 147 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEW 147 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHH
Confidence 7899999999999975 4699887754
No 80
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00076 Score=71.59 Aligned_cols=83 Identities=27% Similarity=0.234 Sum_probs=70.4
Q ss_pred eEeEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCC
Q 010161 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGW 386 (516)
Q Consensus 330 ~~~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~ 386 (516)
...|+++.+.|... ++.|+|++|+|.++ .|+.|+-.++++++.+++.+... |.
T Consensus 61 ~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~---~~ 136 (409)
T COG0624 61 GRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA---GG 136 (409)
T ss_pred CceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh---CC
Confidence 35699999988753 38999999999754 28999999999999999988653 55
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHHhhh
Q 010161 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENLV 416 (516)
Q Consensus 387 ~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~ 416 (516)
.++++|+|++-+.||.|-.|...|+++...
T Consensus 137 ~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~ 166 (409)
T COG0624 137 ELPGDVRLLFTADEESGGAGGKAYLEEGEE 166 (409)
T ss_pred CCCeEEEEEEEeccccCCcchHHHHHhcch
Confidence 678999999999999999999999988753
No 81
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.40 E-value=0.00047 Score=74.63 Aligned_cols=78 Identities=21% Similarity=0.105 Sum_probs=64.1
Q ss_pred EEEEEEcCcCCCCcEEEEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCc
Q 010161 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (516)
Q Consensus 333 NVi~~i~G~~~~~~~viigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~ 391 (516)
|+++.+++.+ ..+.|++.+|+|.++ .|+.|+-+|+++++.+++.|.+ .|++++++
T Consensus 68 n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~---~g~~~~~~ 143 (466)
T PRK07318 68 NYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE---LGLPLSKK 143 (466)
T ss_pred CccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH---cCCCCCcc
Confidence 7777765322 245799999999753 2899999999999999888754 46778889
Q ss_pred EEEEEeCCCcCCCccHHHHHHHh
Q 010161 392 IIFCSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 392 i~f~~~~~eE~gl~GS~~~~~~~ 414 (516)
|.|++...||.|..|++++++.+
T Consensus 144 i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 144 VRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEEEEcccccCchhHHHHHHhC
Confidence 99999999999999999999875
No 82
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.40 E-value=0.00052 Score=72.06 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=61.9
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
-.||+|++ |.. .+.|++.+|+|.++ .|+.|+-++++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~~--~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 131 (383)
T PRK05111 60 KFNLLASL-GSG--EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-----KL 131 (383)
T ss_pred CceEEEEe-CCC--CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc-----CC
Confidence 36999999 543 24599999999753 28999999999999999988642 24
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHh
Q 010161 389 RRTIIFCSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 389 ~r~i~f~~~~~eE~gl~GS~~~~~~~ 414 (516)
+.+|+|++..+||.|..|+++++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 57899999999999989999998764
No 83
>PRK08554 peptidase; Reviewed
Probab=97.38 E-value=0.00095 Score=71.71 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=60.2
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (516)
.|+++.+ |. .++.|++.+|+|.++ .|+.|+.+|++++|.+++.|.+. .++
T Consensus 53 ~~l~~~~-~~--~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~~ 124 (438)
T PRK08554 53 YAVYGEI-GE--GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE-----PLN 124 (438)
T ss_pred eEEEEEe-CC--CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc-----CCC
Confidence 7999997 43 246799999999643 28999999999999999988642 356
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHHh
Q 010161 390 RTIIFCSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 390 r~i~f~~~~~eE~gl~GS~~~~~~~ 414 (516)
++|+|++...||.|..++..+++..
T Consensus 125 ~~i~l~~~~dEE~g~~~~~~~~~~~ 149 (438)
T PRK08554 125 GKVIFAFTGDEEIGGAMAMHIAEKL 149 (438)
T ss_pred CCEEEEEEcccccCccccHHHHHHH
Confidence 7899999999999887777666654
No 84
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.37 E-value=0.00055 Score=71.11 Aligned_cols=74 Identities=24% Similarity=0.168 Sum_probs=61.7
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC--------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~ 397 (516)
.|++|++.+. .+.|++.+|+|.++ .|+.|+-+|+|++|++++.| . .+++++|.|++.
T Consensus 49 ~n~i~~~~~~---~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~-----~~~~~~i~~~~~ 119 (348)
T PRK04443 49 GNARGPAGDG---PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E-----ALVRARVSFVGA 119 (348)
T ss_pred CcEEEEcCCC---CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c-----ccCCCCEEEEEE
Confidence 5899998432 36899999999874 28999999999999999988 2 257889999999
Q ss_pred CCCcCCCccHHHHHHHh
Q 010161 398 DAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 398 ~~eE~gl~GS~~~~~~~ 414 (516)
.+||.|..|...++.+.
T Consensus 120 ~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 120 VEEEAPSSGGARLVADR 136 (348)
T ss_pred cccccCChhHHHHHHhc
Confidence 99999988888777653
No 85
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.34 E-value=0.00091 Score=69.33 Aligned_cols=75 Identities=29% Similarity=0.359 Sum_probs=60.2
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC----------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~----------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~ 395 (516)
.|+++++.+.. + +.|++.+|+|.++ .|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 50 ~~~~~~~~~~~-~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~-------~~~~~i~~~ 120 (352)
T PRK13007 50 NSVVARTDLGR-P-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA-------EPAHDLTLV 120 (352)
T ss_pred CeEEEEccCCC-C-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh-------ccCCCeEEE
Confidence 58999995432 2 3699999999864 389999999999999999883 367899999
Q ss_pred EeCCCcCCC--ccHHHHHHHhh
Q 010161 396 SWDAEEFGM--IGSTEWVEENL 415 (516)
Q Consensus 396 ~~~~eE~gl--~GS~~~~~~~~ 415 (516)
+.++||.|. .|+..++.++.
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~~ 142 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREHP 142 (352)
T ss_pred EEecccccCCcccHHHHHHhcc
Confidence 999999864 58888876543
No 86
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.31 E-value=0.00062 Score=70.33 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=60.5
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC--------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCS 396 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~ 396 (516)
..|+++ |. .+.|++.+|+|.++ .|+.|+-+|+|++|.+++.|... .++++|.|++
T Consensus 47 ~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~ 115 (347)
T PRK08652 47 VINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAF 115 (347)
T ss_pred eeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEE
Confidence 456666 32 36799999999865 39999999999999999988642 2456999999
Q ss_pred eCCCcCCCccHHHHHHHhh
Q 010161 397 WDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 397 ~~~eE~gl~GS~~~~~~~~ 415 (516)
..+||.|..|++.+++++.
T Consensus 116 ~~dEE~g~~G~~~~~~~~~ 134 (347)
T PRK08652 116 VSDEEEGGRGSALFAERYR 134 (347)
T ss_pred ecCcccCChhHHHHHHhcC
Confidence 9999998889999988753
No 87
>PRK07205 hypothetical protein; Provisional
Probab=97.27 E-value=0.0012 Score=71.06 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=62.0
Q ss_pred EEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCC
Q 010161 333 NVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (516)
Q Consensus 333 NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (516)
++++.+ |.. .+.|++.+|+|.++ .|+.|+-.|+|++|...+.|.+ .|.+++
T Consensus 66 ~~~~~~-g~~--~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~---~~~~~~ 139 (444)
T PRK07205 66 YGYAEI-GQG--EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLD---AGVQFN 139 (444)
T ss_pred EEEEEe-cCC--CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCC
Confidence 566665 542 46899999999753 2899999999999999887754 467788
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHH
Q 010161 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 390 r~i~f~~~~~eE~gl~GS~~~~~~ 413 (516)
++|+|++.+.||.|..|+..|++.
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhC
Confidence 999999999999999999999874
No 88
>PRK13004 peptidase; Reviewed
Probab=97.24 E-value=0.0012 Score=69.82 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=61.0
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
.|+++.+.|. .+.|++.+|+|.++. |+.|+-+|++++|.+++.|.+ .+.++
T Consensus 59 ~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 132 (399)
T PRK13004 59 GNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKD---LGLDD 132 (399)
T ss_pred CeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHh---cCCCC
Confidence 5899999764 267999999997642 677888999999999998865 35667
Q ss_pred CCcEEEEEeCCCcC-CCccHHHHHHH
Q 010161 389 RRTIIFCSWDAEEF-GMIGSTEWVEE 413 (516)
Q Consensus 389 ~r~i~f~~~~~eE~-gl~GS~~~~~~ 413 (516)
+++|.|++..+||. |-.|+..++++
T Consensus 133 ~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 133 EYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred CCeEEEEEEcccccCcchhHHHHHHh
Confidence 89999999999995 45677777765
No 89
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0019 Score=66.72 Aligned_cols=118 Identities=22% Similarity=0.254 Sum_probs=82.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCCc---
Q 010161 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGF--- 437 (516)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~l--- 437 (516)
|-||-.||++|||++|.|+ +..++.+++|++..-||.|+.|++....+.... ..|-+|....+...
T Consensus 178 alDdR~gva~lle~lk~l~-----~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~pd------~aiavd~~~~~d~~~~~ 246 (355)
T COG1363 178 ALDDRAGVAALLELLKELK-----GIELPADVYFVASVQEEVGLRGAKTSAFRIKPD------IAIAVDVTPAGDTPGVP 246 (355)
T ss_pred eccchHhHHHHHHHHHHhc-----cCCCCceEEEEEecchhhccchhhccccccCCC------EEEEEecccccCCCCCc
Confidence 4589999999999999883 226789999999999999999998776654332 35677776554221
Q ss_pred ------------c-c----ccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHhc-CCCe
Q 010161 438 ------------F-A----GATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQH-AGVP 499 (516)
Q Consensus 438 ------------~-~----~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~~-~GIP 499 (516)
. . -..|.|.+.+.+++++-+-|-. +....+++||...+... .|||
T Consensus 247 ~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q-----------------~~v~~~ggTDA~a~~~~g~gvp 309 (355)
T COG1363 247 KGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQ-----------------VDVSPGGGTDAGAAHLTGGGVP 309 (355)
T ss_pred ccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeE-----------------EEecCCCCccHHHHHHcCCCCc
Confidence 0 1 1257788888888887554321 01112478999887652 2699
Q ss_pred EEEeeec
Q 010161 500 SVDMYYG 506 (516)
Q Consensus 500 s~~l~~~ 506 (516)
+..++..
T Consensus 310 ta~Igip 316 (355)
T COG1363 310 TALIGIP 316 (355)
T ss_pred eEEEecc
Confidence 9999875
No 90
>PRK09864 putative peptidase; Provisional
Probab=97.18 E-value=0.003 Score=65.76 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC------
Q 010161 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (516)
Q Consensus 361 a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (516)
|-||-.||++|+|++|.+++ ++.+++|++..-||.|+.|++.-+.....+ + .|.+|+...+
T Consensus 173 alDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~PD----i--aIavDvt~~~d~p~~~ 239 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKPD----V--VIVLDTAVAGDVPGID 239 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCCC----E--EEEEecccCCCCCCCc
Confidence 45899999999999998742 678999999999999999998755544332 2 5677765321
Q ss_pred -----------CCc-----ccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHh-cCC
Q 010161 435 -----------PGF-----FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAG 497 (516)
Q Consensus 435 -----------~~l-----~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~G 497 (516)
..+ ..-.+|.+.+.+.+++++.+-|-.. .....+++|-..+.. ..|
T Consensus 240 ~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~-----------------~~~~~ggTDa~~i~~~~~G 302 (356)
T PRK09864 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQF-----------------STMKTGATDGGRYNVMGGG 302 (356)
T ss_pred ccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceE-----------------EEcCCCCchHHHHHHhCCC
Confidence 111 1223567777888888876544210 001124677766533 369
Q ss_pred CeEEEeeecCCCCcCccc
Q 010161 498 VPSVDMYYGKGLALVFYI 515 (516)
Q Consensus 498 IPs~~l~~~~~~p~YHt~ 515 (516)
||++.++.- --|-||+
T Consensus 303 vpt~~isiP--~RY~Hs~ 318 (356)
T PRK09864 303 RPVVALCLP--TRYLHAN 318 (356)
T ss_pred CcEEEEeec--cCcCCCc
Confidence 999999762 2334554
No 91
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.17 E-value=0.0012 Score=69.46 Aligned_cols=76 Identities=32% Similarity=0.284 Sum_probs=61.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
..|+++.. |.. ++.|++.+|+|.++ .|+.|+-.|++++|++++.|.+ .+
T Consensus 63 ~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~--- 133 (394)
T PRK08651 63 RPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDP---AG--- 133 (394)
T ss_pred cceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHh---cC---
Confidence 46788865 432 37899999999643 2678999999999999998754 22
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 389 ~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
+++|+|++..+||.|..|+++++++..
T Consensus 134 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 134 DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred CCCEEEEEecCccccchhHHHHHhccC
Confidence 689999999999998899999998754
No 92
>PRK06156 hypothetical protein; Provisional
Probab=97.16 E-value=0.0023 Score=70.35 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=62.5
Q ss_pred EEE--EEEcCcCCCCcEEEEeecCCCCC---------------------------CCCCCCchHHHHHHHHHHHHHHHHH
Q 010161 333 NVF--AVIRGLEEPNRYVLLGNHRDAWT---------------------------YGAIDPNSGTAALLDIARRYALLMR 383 (516)
Q Consensus 333 NVi--~~i~G~~~~~~~viigaH~Ds~~---------------------------~Ga~D~~sG~a~lle~ar~l~~~~~ 383 (516)
|++ +.++|.. .+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+
T Consensus 97 ~~v~~~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~--- 171 (520)
T PRK06156 97 NRVLEIGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD--- 171 (520)
T ss_pred CeEEEEEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH---
Confidence 544 5677653 35799999999652 1788999999999999887754
Q ss_pred cCCCCCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 010161 384 LGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 384 ~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~ 415 (516)
.+.+++++|.|++..+||.|..|+.+|++++.
T Consensus 172 ~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~ 203 (520)
T PRK06156 172 SGLPLARRIELLVYTTEETDGDPLKYYLERYT 203 (520)
T ss_pred cCCCCCceEEEEEecccccCchhHHHHHHhcC
Confidence 45677889999999999999999999998653
No 93
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.08 E-value=0.0027 Score=66.71 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=62.3
Q ss_pred EEEEEEcCcCCCCcEEEEeecCCCCC---------------------------------CCCCCCchHHHHHHHHHHHHH
Q 010161 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------------------YGAIDPNSGTAALLDIARRYA 379 (516)
Q Consensus 333 NVi~~i~G~~~~~~~viigaH~Ds~~---------------------------------~Ga~D~~sG~a~lle~ar~l~ 379 (516)
||++++.+. +.+.|++.+|+|.++ .|+.|+-+|+|++|.+++.|.
T Consensus 42 nvva~~~~~--~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFG--KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCC--CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 999998543 246799999999751 178899999999999999885
Q ss_pred HHHHcCCCCCCcEEEEEeCCCcCC--CccHHHHHHHhh
Q 010161 380 LLMRLGWSPRRTIIFCSWDAEEFG--MIGSTEWVEENL 415 (516)
Q Consensus 380 ~~~~~g~~p~r~i~f~~~~~eE~g--l~GS~~~~~~~~ 415 (516)
+. +.+.+++.+|.|++..+||.| ..|+..+++++.
T Consensus 120 ~~-~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~ 156 (373)
T TIGR01900 120 GR-APETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHP 156 (373)
T ss_pred hh-ccccCCCCCEEEEEEecccccCCCCCHHHHHHhCc
Confidence 42 123456789999999999985 359998887643
No 94
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.06 E-value=0.0029 Score=68.16 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=56.7
Q ss_pred CcEEEEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCC
Q 010161 345 NRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG 403 (516)
Q Consensus 345 ~~~viigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~g 403 (516)
.+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+ .+.+|+++|.|++...||.|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g 143 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE---LGLKLKKKIRFIFGTDEETG 143 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCCCcEEEEEECCcccC
Confidence 35799999999653 2899999999999999888754 46678899999999999999
Q ss_pred CccHHHHHHH
Q 010161 404 MIGSTEWVEE 413 (516)
Q Consensus 404 l~GS~~~~~~ 413 (516)
..|+.+|++.
T Consensus 144 ~~g~~~~l~~ 153 (447)
T TIGR01887 144 WACIDYYFEH 153 (447)
T ss_pred cHhHHHHHHh
Confidence 9999999875
No 95
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=96.97 E-value=0.0025 Score=65.76 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=60.4
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC--------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~ 397 (516)
.|+++.. |. ..+.|++.+|+|.++ .|+.|+.+|+|++|++.+.|.+. ..+|.|++.
T Consensus 40 ~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~ 109 (336)
T TIGR01902 40 GNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGL 109 (336)
T ss_pred CcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEE
Confidence 4777765 43 246899999999863 38999999999999999988532 358999999
Q ss_pred CCCcCCCccHHHHHHHhh
Q 010161 398 DAEEFGMIGSTEWVEENL 415 (516)
Q Consensus 398 ~~eE~gl~GS~~~~~~~~ 415 (516)
.+||.|..|++++++++.
T Consensus 110 ~dEE~g~~G~~~~~~~~~ 127 (336)
T TIGR01902 110 VDEESSSKGAREVIDKNY 127 (336)
T ss_pred eCcccCCccHHHHHhhcC
Confidence 999999999999988754
No 96
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=96.89 E-value=0.0045 Score=64.68 Aligned_cols=77 Identities=23% Similarity=0.241 Sum_probs=59.3
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCC-----------------------CCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..|++++. |. ..+.|++.+|+|.++. |+.|+-.|++++|..++.+.+ .+.+
T Consensus 44 ~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 117 (370)
T TIGR01246 44 TKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVK---KNPD 117 (370)
T ss_pred CceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHH---hcCC
Confidence 36899986 43 3578999999997531 677999999999988876654 3445
Q ss_pred CCCcEEEEEeCCCcCC-CccHHHHHHH
Q 010161 388 PRRTIIFCSWDAEEFG-MIGSTEWVEE 413 (516)
Q Consensus 388 p~r~i~f~~~~~eE~g-l~GS~~~~~~ 413 (516)
++.+|+|++..+||.+ ..|+..+.+.
T Consensus 118 ~~~~v~~~~~~dEE~~~~~G~~~~~~~ 144 (370)
T TIGR01246 118 HKGSISLLITSDEEGTAIDGTKKVVET 144 (370)
T ss_pred CCCcEEEEEEeccccCCCcCHHHHHHH
Confidence 6789999999999976 4699887653
No 97
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=96.88 E-value=0.0058 Score=63.82 Aligned_cols=79 Identities=30% Similarity=0.270 Sum_probs=58.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCCCC--------CCC--------chHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYGA--------IDP--------NSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~Ga--------~D~--------~sG~a~lle~ar~l~~~~~~g~~p~r~i~f 394 (516)
..||+++++|.. +.+.|++.+|+|.++.+. .++ .+++|++|.+++.|.+.. .+++++|.|
T Consensus 43 ~~~vva~~~~~~-~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~~---~~~~~~i~~ 118 (363)
T TIGR01891 43 ATGVVATIGGGK-PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKLA---DLLEGTVRL 118 (363)
T ss_pred CcEEEEEEeCCC-CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhch---hhCCceEEE
Confidence 379999997743 346899999999875210 011 256888888888776532 356789999
Q ss_pred EEeCCCcCCCccHHHHHHHh
Q 010161 395 CSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 395 ~~~~~eE~gl~GS~~~~~~~ 414 (516)
++..+||.| .|+..++++.
T Consensus 119 ~~~~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 119 IFQPAEEGG-GGATKMIEDG 137 (363)
T ss_pred EEeecCcCc-chHHHHHHCC
Confidence 999999986 7999887653
No 98
>PLN02693 IAA-amino acid hydrolase
Probab=96.71 E-value=0.0052 Score=66.04 Aligned_cols=78 Identities=24% Similarity=0.234 Sum_probs=59.7
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCCC----------------CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYG----------------AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~G----------------a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f 394 (516)
..||+|++.+. +.+.|++.+|+|.++.+ +.|--+++|++|.+++.|.+.. .+.+.+|+|
T Consensus 90 ~~~via~~g~~--~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~---~~~~g~V~~ 164 (437)
T PLN02693 90 ITGIIGYIGTG--EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR---HHLQGTVVL 164 (437)
T ss_pred CcEEEEEECCC--CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc---ccCCceEEE
Confidence 48999999432 35789999999997531 4455568999999999987642 234678999
Q ss_pred EEeCCCcCCCccHHHHHHHh
Q 010161 395 CSWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 395 ~~~~~eE~gl~GS~~~~~~~ 414 (516)
++..+|| +..|++.++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557999888763
No 99
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=96.71 E-value=0.0034 Score=65.07 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=52.4
Q ss_pred EEEEeecCCCCC--------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHH
Q 010161 347 YVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (516)
Q Consensus 347 ~viigaH~Ds~~--------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~ 412 (516)
.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+ .| .+|.|++..+||.|..|++++++
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~---~~----~~i~~~~~~dEE~g~~G~~~l~~ 134 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNE---KG----IKVMVSGLADEESTSIGAKELVS 134 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cC----CCEEEEEEcCcccCCccHHHHHh
Confidence 599999999975 4999999999999999998754 23 35899999999999899999988
Q ss_pred Hh
Q 010161 413 EN 414 (516)
Q Consensus 413 ~~ 414 (516)
+.
T Consensus 135 ~~ 136 (346)
T PRK00466 135 KG 136 (346)
T ss_pred cC
Confidence 64
No 100
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=96.59 E-value=0.014 Score=63.63 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=63.7
Q ss_pred EeEEEEEEcCcC--CCCcEEEEeecCCCCC--------------------------CCC---CCCchHHHHHHHHHHHHH
Q 010161 331 IHNVFAVIRGLE--EPNRYVLLGNHRDAWT--------------------------YGA---IDPNSGTAALLDIARRYA 379 (516)
Q Consensus 331 ~~NVi~~i~G~~--~~~~~viigaH~Ds~~--------------------------~Ga---~D~~sG~a~lle~ar~l~ 379 (516)
..|+++.+++.. ...+.|++.+|+|.++ .|+ .|++.|+|++|.+.+
T Consensus 52 ~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~--- 128 (485)
T PRK15026 52 VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA--- 128 (485)
T ss_pred cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---
Confidence 369999886531 2346799999999763 255 499999999887642
Q ss_pred HHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccc
Q 010161 380 LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCA 431 (516)
Q Consensus 380 ~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~ 431 (516)
+.+. +...|.|++...||.|+.|++++.... .+..+.||+|..
T Consensus 129 ---~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~~-----~~~~~~i~~e~~ 171 (485)
T PRK15026 129 ---DENV-VHGPLEVLLTMTEEAGMDGAFGLQSNW-----LQADILINTDSE 171 (485)
T ss_pred ---hCCC-CCCCEEEEEEcccccCcHhHHHhhhcc-----CCcCEEEEeCCC
Confidence 2233 367899999999999999999885422 234556777764
No 101
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=96.53 E-value=0.01 Score=61.95 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=76.7
Q ss_pred eeEeEEEEEEcCcCCCCcEEEEeecCCCCC--------------------------------------------CCCCCC
Q 010161 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------------------------------------YGAIDP 364 (516)
Q Consensus 329 ~~~~NVi~~i~G~~~~~~~viigaH~Ds~~--------------------------------------------~Ga~D~ 364 (516)
..-.||+|-++|. ++.+.||+.+|+|.+. .|+.|-
T Consensus 63 ygR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DM 141 (553)
T COG4187 63 YGRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDM 141 (553)
T ss_pred cccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhh
Confidence 3557999999995 4689999999999654 289999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhh---hcccccEEEEEEecccc
Q 010161 365 NSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL---VNLGAKAVAYLNVDCAV 432 (516)
Q Consensus 365 ~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~---~~~~~~~~a~inlD~~~ 432 (516)
-||.|+-|.+...|++-. --.-+|.|+....||....|.++-+.+.. +...-...+.||+|.+.
T Consensus 142 KsGlav~la~L~~fa~~~----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~ 208 (553)
T COG4187 142 KSGLAVHLACLEEFAART----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTS 208 (553)
T ss_pred hhhhHHHHHHHHHHhhCC----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccccc
Confidence 999999888877776421 23458999999999998888887665433 33334688999999863
No 102
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.015 Score=61.64 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=66.0
Q ss_pred eeeEeEEEEEEcCc-----CCC-CcEEEEeecCCCCC------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 010161 328 VATIHNVFAVIRGL-----EEP-NRYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (516)
Q Consensus 328 ~~~~~NVi~~i~G~-----~~~-~~~viigaH~Ds~~------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~ 395 (516)
+...+||....+.. .++ +++||..+..|+.. .||.-.-++...+|..||+|++.+.- -..+|++.|+
T Consensus 154 pl~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai-~nl~rnV~f~ 232 (596)
T KOG2657|consen 154 PLHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAI-NNLNRNVFFA 232 (596)
T ss_pred ccCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCccc-ccccceeEEE
Confidence 34557777766432 233 68999999999975 38877889999999999999653311 1357999999
Q ss_pred EeCCCcCCCccHHHHHHHh
Q 010161 396 SWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 396 ~~~~eE~gl~GS~~~~~~~ 414 (516)
+|.||-++.+||+..+-+.
T Consensus 233 ~f~get~~ylgS~r~~yem 251 (596)
T KOG2657|consen 233 FFNGETLDYLGSGRAAYEM 251 (596)
T ss_pred EeecceeeeccchhhhhHh
Confidence 9999999999999776554
No 103
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.33 E-value=0.015 Score=61.42 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=57.9
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
.||++.+ |.. .+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+ .++.+
T Consensus 57 ~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 130 (395)
T TIGR03526 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH---cCCCC
Confidence 5899988 542 36799999999643 2889999999999999998754 35566
Q ss_pred CCcEEEEEeCCCc-CCCccHHHHHHH
Q 010161 389 RRTIIFCSWDAEE-FGMIGSTEWVEE 413 (516)
Q Consensus 389 ~r~i~f~~~~~eE-~gl~GS~~~~~~ 413 (516)
++++.|++..+|| .+-.|+..++++
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhc
Confidence 7789898888899 344566666654
No 104
>PLN02280 IAA-amino acid hydrolase
Probab=96.32 E-value=0.012 Score=63.92 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=58.0
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCCCC-----------------CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYG-----------------AIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~~G-----------------a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~ 393 (516)
..||+|++ |.. +++.|++.+|+|.++.+ -+-+ .++|++|.+++.|++. +.+++.+|+
T Consensus 140 ~~~vva~~-g~~-~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd-~~~A~~l~a~~~L~~~---~~~~~g~V~ 213 (478)
T PLN02280 140 KTGIRAWI-GTG-GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHD-AHVAMLLGAAKILKSR---EHLLKGTVV 213 (478)
T ss_pred CCEEEEEE-CCC-CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCc-HHHHHHHHHHHHHHhc---cccCCceEE
Confidence 46999998 543 24789999999987631 1223 3899999999988653 234677999
Q ss_pred EEEeCCCcCCCccHHHHHHH
Q 010161 394 FCSWDAEEFGMIGSTEWVEE 413 (516)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~ 413 (516)
|++-.+||.|. |+++.+++
T Consensus 214 ~if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 214 LLFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred EEecccccccc-hHHHHHHC
Confidence 99999999974 99998876
No 105
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.13 E-value=0.019 Score=60.51 Aligned_cols=95 Identities=18% Similarity=0.100 Sum_probs=64.6
Q ss_pred ceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceeccCCC
Q 010161 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGD 245 (516)
Q Consensus 166 ~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~~Gd 245 (516)
.+.+.+.++..+-|=.. -....++||++++.+|++. +-+|++.|++.||.|++++++..|...
T Consensus 72 ~a~~~~~a~~~pld~cs--~~~~kl~~~~~~v~RGnC~-Ft~Ka~~Aq~aGAsaLliin~~~d~~~-------------- 134 (541)
T KOG2442|consen 72 AADIPHLAQVDPLDSCS--TLQSKLSGKVALVFRGNCS-FTEKAKLAQAAGASALLIINNKKDLLF-------------- 134 (541)
T ss_pred ccccchhhhcCCccccC--CCCccccceeEEEecccce-eehhhhhhhhcCceEEEEEcCchhhcc--------------
Confidence 34455555555444110 0124689999999999998 899999999999999999998654310
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCCceeecCHHHHHHHHHhcC
Q 010161 246 PLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (516)
Q Consensus 246 p~tP~~~s~~~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~ 292 (516)
.|..+ |.. ...-.||++.|++++++.+.....
T Consensus 135 --~~~~~------~~~-------~~dv~IPv~mi~~~~~~~l~~~~~ 166 (541)
T KOG2442|consen 135 --MPCGN------KET-------SLDVTIPVAMISYSDGRDLNKSTR 166 (541)
T ss_pred --CCCCC------CCc-------cccccceEEEEEhhhHHHHHhhhc
Confidence 11111 111 112469999999999999997654
No 106
>PRK08737 acetylornithine deacetylase; Provisional
Probab=96.05 E-value=0.022 Score=59.62 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=55.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCCCC---------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds~~---------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~ 389 (516)
..|+++. +|. +.|++.+|+|.++ .|+.|.-+|+|++|.+++. +.
T Consensus 54 ~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~----------~~ 118 (364)
T PRK08737 54 AVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA----------GD 118 (364)
T ss_pred ceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc----------cC
Confidence 4689986 453 3699999999753 1899998999999988763 34
Q ss_pred CcEEEEEeCCCcCCC-ccHHHHHHHh
Q 010161 390 RTIIFCSWDAEEFGM-IGSTEWVEEN 414 (516)
Q Consensus 390 r~i~f~~~~~eE~gl-~GS~~~~~~~ 414 (516)
.+|.|++...||.|. .|++.+++..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhC
Confidence 689999999999987 6888888763
No 107
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=95.99 E-value=0.026 Score=59.58 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=56.9
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCC-----------------------CCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~-----------------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p 388 (516)
.|++|.+ |.. .+.|++.+|+|.++ .|+.|+-.|+|++|.+++.|.+ .|.++
T Consensus 57 ~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~---~g~~~ 130 (395)
T TIGR03320 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHH---cCCCC
Confidence 5899988 532 36799999999743 3899999999999999998754 45567
Q ss_pred CCcEEEEEeCCCcCC-CccHHHHHHH
Q 010161 389 RRTIIFCSWDAEEFG-MIGSTEWVEE 413 (516)
Q Consensus 389 ~r~i~f~~~~~eE~g-l~GS~~~~~~ 413 (516)
+.+|.|++..+||.+ -.|+..++++
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEecccccccCchHHHHHHHh
Confidence 788999888888863 2344555543
No 108
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=95.98 E-value=0.022 Score=58.82 Aligned_cols=46 Identities=11% Similarity=0.383 Sum_probs=39.4
Q ss_pred HHHHHHHHhhc--CCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 010161 70 TVSSYLRDLTH--HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (516)
Q Consensus 70 ~i~~~L~~Ls~--~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~v 115 (516)
-..++++.++. ++|++||+++.++++||+++|+++|+++..++|..
T Consensus 32 ~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~ 79 (346)
T PRK10199 32 FANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNS 79 (346)
T ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccc
Confidence 34567777777 49999999999999999999999999998777764
No 109
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=95.85 E-value=0.055 Score=56.22 Aligned_cols=117 Identities=20% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccccc--------
Q 010161 362 IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQ-------- 433 (516)
Q Consensus 362 ~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~-------- 433 (516)
.||-+|+++++++++.|.+ .+++++++|.|++...||.| .|+..-+ . ..+.-+|.+|+...
T Consensus 182 ~D~K~G~a~~l~~~~~l~~---~~~~~~~~v~~~~t~qEEvG-~gaa~~i---~----pd~a~~i~vd~~~~~p~~~~lg 250 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVE---HKVPLPVDVHPLFTITEEVG-SGASHAL---P----PDVAELVSVDNGTVAPGQNSSE 250 (343)
T ss_pred cccHHhHHHHHHHHHHHHh---cCCCCCceEEEEEECCcccC-ccchhcc---c----HhhhccEEEEecccCCCCCcCC
Confidence 6899999999999998864 35568899999999999999 5642211 1 12222356664321
Q ss_pred -CCCcc-----cccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHh-cCCCeEEEeeec
Q 010161 434 -GPGFF-----AGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYYG 506 (516)
Q Consensus 434 -g~~l~-----~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~GIPs~~l~~~ 506 (516)
|..+. .-..|.+.+.+.+++++.+-|-.. ....++++|-..+.. ..|||++.++..
T Consensus 251 ~Gp~i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q~-----------------~~~~~~gtDa~~~~~~~~Gi~t~~i~iP 313 (343)
T TIGR03106 251 HGVTIAMADSSGPFDYHLTRKLIRLCQDHGIPHRR-----------------DVFRYYRSDAASAVEAGHDIRTALVTFG 313 (343)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-----------------EecCCCCChHHHHHHcCCCCCEEEeecc
Confidence 11221 123577888888888876544210 011135777777544 259999998763
No 110
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=95.81 E-value=0.19 Score=54.90 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=71.7
Q ss_pred eEeEEEEEEcCcC-CCCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHH
Q 010161 330 TIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408 (516)
Q Consensus 330 ~~~NVi~~i~G~~-~~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~ 408 (516)
...||+|.++... ...|.+|+.+.++.... .-|..|++.+|.++|.+++. .-| .+.|+|++.+. +..|.+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~--~~n~~~v~l~lal~~~~~~~--~~w--sKDii~l~~~~---~~~g~~ 72 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDG--EYNAGGVALALALARYFRRQ--SYW--SKDIIFLFTDD---ELAGMQ 72 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCc--ccchhhHHHHHHHHHHhhhc--hhh--hccEEEEecCC---cchHHH
Confidence 4579999997432 34688999999876553 44588999999999999864 235 68999998764 358999
Q ss_pred HHHHHhhhc---------c---cccEEEEEEecccccC
Q 010161 409 EWVEENLVN---------L---GAKAVAYLNVDCAVQG 434 (516)
Q Consensus 409 ~~~~~~~~~---------~---~~~~~a~inlD~~~~g 434 (516)
.|++++... + ...+.+.|++|..+..
T Consensus 73 awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~ 110 (504)
T PF04114_consen 73 AWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDS 110 (504)
T ss_pred HHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCC
Confidence 999987543 1 1258889999987654
No 111
>PRK02256 putative aminopeptidase 1; Provisional
Probab=95.59 E-value=0.049 Score=58.70 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=41.6
Q ss_pred EEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHH
Q 010161 348 VLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409 (516)
Q Consensus 348 viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~ 409 (516)
-++|.+.+=....+.||-.||.+++|+.+.+. +++..+++++|+-||.|+.|++-
T Consensus 245 ~~~G~~~efI~s~rLDNr~~~~~~leal~~~~-------~~~~~~~~~~~dqEEVGs~ga~g 299 (462)
T PRK02256 245 RDVGLDRSLIGAYGQDDRVCAYTSLEALLELE-------NPEKTAVVLLVDKEEIGSEGNTG 299 (462)
T ss_pred ceeccccceeeccccccHHHHHHHHHHHHhcc-------cCCCeEEEEEEcccccCCcchhh
Confidence 34455555445578899999999999987542 35678999999999999877653
No 112
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=94.81 E-value=0.1 Score=56.50 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEE----------------
Q 010161 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAV---------------- 423 (516)
Q Consensus 360 Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~---------------- 423 (516)
.+.||-.|+.++|+..+...... +-.+.....+++|+-||.|..|++--.........+++.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~ 325 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAK 325 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHH
Confidence 46799999999999977543210 001344555555999999988776422222221111111
Q ss_pred -----EEEEeccccc-------------------CCCc------ccccChhHHHHHHHHHHhcCCCCCCccchhhhccCC
Q 010161 424 -----AYLNVDCAVQ-------------------GPGF------FAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAP 473 (516)
Q Consensus 424 -----a~inlD~~~~-------------------g~~l------~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~ 473 (516)
..|.+|++-. |..+ ...+++.+..++++++++.+-|- +.+..+
T Consensus 326 ~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~-------Q~~~~~ 398 (465)
T PTZ00371 326 LMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI-------QEFVVK 398 (465)
T ss_pred HHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE-------EEEEec
Confidence 4678888532 1111 11245677777888877654442 111111
Q ss_pred CccccccCCCCCCCcHHHHHh-cCCCeEEEeee
Q 010161 474 NRIFNIQRLGGVDSDFASFVQ-HAGVPSVDMYY 505 (516)
Q Consensus 474 ~~~~~~~~~~~~~SD~~~F~~-~~GIPs~~l~~ 505 (516)
....+|||-.|++. ..|||+++++-
T Consensus 399 -------~d~~~GsTig~i~~s~~Gi~tvDiGi 424 (465)
T PTZ00371 399 -------NDSPCGSTIGPILSSNLGIRTVDIGI 424 (465)
T ss_pred -------CCCCCcchHHHHHHhCCCCcEEEech
Confidence 11247999999877 68999999975
No 113
>PRK02813 putative aminopeptidase 2; Provisional
Probab=93.58 E-value=0.42 Score=51.20 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCc---cHHH-HHHHhh---------------hcccc
Q 010161 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI---GSTE-WVEENL---------------VNLGA 420 (516)
Q Consensus 360 Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~---GS~~-~~~~~~---------------~~~~~ 420 (516)
.+.||-.|+.+++++.+.+. ++.++++++|+-||.|+. |+.. |++... ..+
T Consensus 231 ~~lDnr~~~~~~l~al~~~~--------~~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i-- 300 (428)
T PRK02813 231 GRLDNLSSCHAGLEALLAAA--------SDATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRAL-- 300 (428)
T ss_pred ecchhHHHHHHHHHHHHhcC--------CCCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhh--
Confidence 56799999999999876542 157999999999999988 7763 111111 111
Q ss_pred cEEEEEEecccccC-------------------CCccc------ccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCc
Q 010161 421 KAVAYLNVDCAVQG-------------------PGFFA------GATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNR 475 (516)
Q Consensus 421 ~~~a~inlD~~~~g-------------------~~l~~------~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~ 475 (516)
+--..|.+|++-.. ..+.. .+++.+..++++++++.+-|- +.+..+
T Consensus 301 ~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-------Q~~v~~-- 371 (428)
T PRK02813 301 ARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-------QEFVNR-- 371 (428)
T ss_pred CCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-------EEEEec--
Confidence 12235788875221 11111 134566777777777654431 111111
Q ss_pred cccccCCCCCCCcHHHHHh-cCCCeEEEeee
Q 010161 476 IFNIQRLGGVDSDFASFVQ-HAGVPSVDMYY 505 (516)
Q Consensus 476 ~~~~~~~~~~~SD~~~F~~-~~GIPs~~l~~ 505 (516)
.-.++|||-.|++. +.|||+++++-
T Consensus 372 -----~d~~gGstig~i~~s~~Gi~tvdiGi 397 (428)
T PRK02813 372 -----SDMPCGSTIGPITAARLGIRTVDVGA 397 (428)
T ss_pred -----CCCCCccHHHHHHHhCCCCcEEEeCh
Confidence 11147999999876 67999999975
No 114
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=93.23 E-value=0.29 Score=50.96 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=67.1
Q ss_pred EeEEEEEEcCcCCCCcEEEEeecCCC--------CC---------------CCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q 010161 331 IHNVFAVIRGLEEPNRYVLLGNHRDA--------WT---------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (516)
Q Consensus 331 ~~NVi~~i~G~~~~~~~viigaH~Ds--------~~---------------~Ga~D~~sG~a~lle~ar~l~~~~~~g~~ 387 (516)
..-|+--..|+++..+.|++..|+|- |. .|+.||-.-++..+++.++++++ |..
T Consensus 77 lPpvvl~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~---g~~ 153 (473)
T KOG2276|consen 77 LPPVVLGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQL---GID 153 (473)
T ss_pred cChhhhhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHh---Ccc
Confidence 33344444588877889999999994 32 39999999999999999988765 556
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhhhc
Q 010161 388 PRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (516)
Q Consensus 388 p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~ 417 (516)
.+.+|+||+=+-||.|..|-.+.++.....
T Consensus 154 lpvnv~f~~EgmEEsgS~~L~~l~~~~kD~ 183 (473)
T KOG2276|consen 154 LPVNVVFVFEGMEESGSEGLDELIEKEKDK 183 (473)
T ss_pred ccceEEEEEEechhccCccHHHHHHHHhhh
Confidence 789999999999999999998888776554
No 115
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.19 Score=51.77 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCcCCCcceeeceeccCCCCCCCCCCCCCCCccccccccc
Q 010161 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (516)
Q Consensus 187 gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~ 266 (516)
.-.....+||+++|++. +.+|+.+|+++|++|+|+|+++.+.. -+ .+.+-
T Consensus 75 ~~~~~~~laLI~Rg~Cs-Fe~Kv~~AQ~aGfkaaIVynn~~~~~--lv-------------~~~~~-------------- 124 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCS-FEDKVLNAQRAGFKAAIVYNNVGSED--LV-------------AMASN-------------- 124 (348)
T ss_pred CCCCcceEEEEEccCCc-hHHHHhhcccccCceEEEecCCCCch--he-------------eeccC--------------
Confidence 34567789999999998 89999999999999999999874321 11 11110
Q ss_pred ccCCCCCCceeecCHHHHHHHHHhc
Q 010161 267 VSKRFPKIPSLPLSFENAQIILGSL 291 (516)
Q Consensus 267 ~~~~~~~IP~~~Is~~~a~~ll~~l 291 (516)
...-.|+++-|+...++.|.+..
T Consensus 125 --~~~v~i~~~~vs~~~ge~l~~~~ 147 (348)
T KOG4628|consen 125 --PSKVDIHIVFVSVFSGELLSSYA 147 (348)
T ss_pred --CccceeEEEEEeeehHHHHHHhh
Confidence 01235888999988888888743
No 116
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.02 E-value=0.23 Score=44.87 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEe
Q 010161 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (516)
Q Consensus 187 gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~ 223 (516)
++...|.|+|+.+|+|. +-.|..+++++||.++||-
T Consensus 83 ~~f~~d~vaL~eRGeCS-Fl~Ktl~~e~aGa~aiiit 118 (193)
T KOG3920|consen 83 EIFAPDSVALMERGECS-FLVKTLNGEKAGATAIIIT 118 (193)
T ss_pred cccCCCcEEEEecCCce-eeehhhhhhhcCceEEEEe
Confidence 78899999999999998 8999999999999987764
No 117
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=88.67 E-value=2.3 Score=45.05 Aligned_cols=78 Identities=28% Similarity=0.271 Sum_probs=60.0
Q ss_pred eEEEEEEcCcCCCCcEEEEeecCCCCCC-------------C---CCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 010161 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------G---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (516)
Q Consensus 332 ~NVi~~i~G~~~~~~~viigaH~Ds~~~-------------G---a~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~ 395 (516)
.=|+|+++|.. +.+.|.+-|-+|..+. | |.=--.-++++|-.|+.|++++. ..+-+|+|+
T Consensus 57 TGvva~~~~g~-~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~---~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK-PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKD---NLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC-CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhh---hCCcEEEEE
Confidence 56899999765 4569999999998762 2 11111237999999999998753 467899999
Q ss_pred EeCCCcCCCccHHHHHHHh
Q 010161 396 SWDAEEFGMIGSTEWVEEN 414 (516)
Q Consensus 396 ~~~~eE~gl~GS~~~~~~~ 414 (516)
+-.|||.+- |++..+++=
T Consensus 133 fQPAEE~~~-Ga~~mi~~G 150 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDG 150 (392)
T ss_pred ecccccccc-cHHHHHhcC
Confidence 999999876 888888764
No 118
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=6.4 Score=39.39 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=44.0
Q ss_pred HHHHHcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeEE
Q 010161 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (516)
Q Consensus 59 ~~~~l~~~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~v 115 (516)
.+.+-...+..+++++|.-+- .+|..||+|..+..+||.+.+++.|+.++.+.|.-
T Consensus 41 lr~i~~~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~ 96 (338)
T KOG3946|consen 41 LRAINPDSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTD 96 (338)
T ss_pred HHHhcCCCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccc
Confidence 345555666777887754443 58999999999999999999999999988777653
No 119
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=81.54 E-value=2.5 Score=44.82 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=37.8
Q ss_pred cChHHHHHHHHHhhcCC--------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 66 SSNYTVSSYLRDLTHHP--------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 66 ~~~~~i~~~L~~Ls~~~--------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
++.+++.++|+.|.+.+ |.++|.++.++++||.+.|+++|++++.+
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~ 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 34567788888888743 67889999999999999999999987653
No 120
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=77.90 E-value=6.6 Score=45.04 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=35.2
Q ss_pred ccChHHHHHHHHHhhc-CCCCCCChhhH-HHHHHHHHHHHHC
Q 010161 65 LSSNYTVSSYLRDLTH-HPHLAGTEPSL-DTVRYVQSHFEQL 104 (516)
Q Consensus 65 ~~~~~~i~~~L~~Ls~-~~r~aGt~g~~-~~a~~i~~~~~~~ 104 (516)
+.+.++++.+|.+|++ +||+.||..++ .+.+|+.++..+.
T Consensus 53 ~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i 94 (834)
T KOG2194|consen 53 QFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKI 94 (834)
T ss_pred hhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHH
Confidence 4458899999999998 79999999998 8999999998863
No 121
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=76.50 E-value=4.5 Score=42.92 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=39.4
Q ss_pred ccChHHHHHHHHHhhcC-C-------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 65 LSSNYTVSSYLRDLTHH-P-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 65 ~~~~~~i~~~L~~Ls~~-~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
.++.+++.++++.|.+. + |.+.|.++.++++||++.|+++|++++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~ 57 (413)
T PRK09290 3 RIDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD 57 (413)
T ss_pred CcCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 35677888889998874 4 66889999999999999999999998654
No 122
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=76.22 E-value=4.6 Score=42.95 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc---C-----CCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 69 YTVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 69 ~~i~~~L~~Ls~---~-----~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
.++++.++.|++ . .|.+.|+++.++++||.+.|++.|++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~ 61 (414)
T PRK12891 10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDA 61 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 467777777775 2 4899999999999999999999999987643
No 123
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=75.79 E-value=5.4 Score=42.30 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhcCC-------CCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 68 NYTVSSYLRDLTHHP-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
.+++.+++..|+.-+ |.+.|+++.++++||.+.|++.|++++..
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 58 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD 58 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 457888999998644 56889999999999999999999988654
No 124
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.45 E-value=9.5 Score=41.80 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred eeeEeEEEEEEcCcC-CCCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCcc
Q 010161 328 VATIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIG 406 (516)
Q Consensus 328 ~~~~~NVi~~i~G~~-~~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~G 406 (516)
+....||+|.+++-. ...|-+|+...++.-..+ |-.|++.++.+++.++.-. -| .+.|+|++.+++ ..|
T Consensus 117 ~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~---~~~~v~l~lsla~~f~r~~--yW--sKDII~v~~d~~---~~g 186 (617)
T KOG3566|consen 117 EYSGENVYGILRAPRGDGTESIVLVVPYGRSSGS---NSASVALLLSLADYFSRWV--YW--SKDIIFVFTDGP---ALG 186 (617)
T ss_pred hcCCceEEEEEecCCCCCcceEEEEEecccCCCc---chhHHHHHHHHHHHhcCCe--ee--cccEEEEEeCCc---ccc
Confidence 344799999998643 345788889888765433 3568899999999886421 13 689999999884 577
Q ss_pred HHHHHHHhhh
Q 010161 407 STEWVEENLV 416 (516)
Q Consensus 407 S~~~~~~~~~ 416 (516)
-..|++.+.+
T Consensus 187 ~~AwLeaYhd 196 (617)
T KOG3566|consen 187 LDAWLEAYHD 196 (617)
T ss_pred HHHHHHHhhc
Confidence 7899988765
No 125
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=71.37 E-value=5.3 Score=42.49 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=40.4
Q ss_pred HHHHHHHHhhc--------CCCCCCChhhHHHHHHHHHHHHHCCCceeeeee-EEEEeeec
Q 010161 70 TVSSYLRDLTH--------HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY-KALLSYPV 121 (516)
Q Consensus 70 ~i~~~L~~Ls~--------~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y-~v~~~~p~ 121 (516)
++++.|+.|+. ..|++-|+.+.++.+|+.++++++||+++.+.. .++..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g 64 (406)
T TIGR03176 4 HFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVG 64 (406)
T ss_pred HHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecC
Confidence 56667777765 158999999999999999999999999887765 23444443
No 126
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=70.76 E-value=8.9 Score=41.89 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeee-EEEEe
Q 010161 65 LSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY-KALLS 118 (516)
Q Consensus 65 ~~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y-~v~~~ 118 (516)
.++...+.+.|+.|++.|+.+|. +.+.++|+.+.+++.|++++.++. .+...
T Consensus 6 ~~~~~~~~~~l~~Lv~ips~S~~--e~~~~~~l~~~~~~~G~~~~~d~~gnvi~~ 58 (485)
T PRK15026 6 QLSPQPLWDIFAKICSIPHPSYH--EEQLAEYIVGWAKEKGFHVERDQVGNILIR 58 (485)
T ss_pred hcCHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHhCCCEEEEEecCeEEEE
Confidence 45677888999999999988776 459999999999999999876543 34433
No 127
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=67.25 E-value=7.6 Score=43.50 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcC-----------CCCCCChhhHHHHHHHHHHHHHCCCc-eeeeee-EEEEeeec
Q 010161 69 YTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEY-KALLSYPV 121 (516)
Q Consensus 69 ~~i~~~L~~Ls~~-----------~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~y-~v~~~~p~ 121 (516)
+++.++|+.|+.. .|++-|+.+.++++|+.++|++.||+ ++.+.. .++-.+|+
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~g 246 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYKA 246 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcCC
Confidence 6788888888862 37888999999999999999999998 988775 34444443
No 128
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=65.10 E-value=1.1e+02 Score=32.36 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeee
Q 010161 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
+.+.+.|+.|-+.|=.... .++.++++||.+.|++.|+++...
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~ 57 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELI 57 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEE
Confidence 4677788888876544322 234689999999999999987544
No 129
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=65.02 E-value=9.2 Score=40.44 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=33.9
Q ss_pred HHHHHHHHhhc---C-----CCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 70 TVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 70 ~i~~~L~~Ls~---~-----~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
++++.|+.|++ . .|++-|+.+.++++|++++|++.|++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~ 52 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDE 52 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 34555555554 1 4888899999999999999999999987655
No 130
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=61.15 E-value=46 Score=35.25 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeee
Q 010161 68 NYTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
.+++.+.|+.|.+.+-.++- ++..++++||++.|+++|+++..++
T Consensus 36 ~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~ 81 (410)
T PRK06133 36 QPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAP 81 (410)
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 34677888888887766664 3456899999999999999976544
No 131
>PRK06915 acetylornithine deacetylase; Validated
Probab=60.05 E-value=18 Score=38.31 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=38.8
Q ss_pred HHHHHHHcccCh--HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 57 HFQKTFLSLSSN--YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 57 ~~~~~~l~~~~~--~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
++++.+++.++. +++.+.+++|-+.|=.+| .+.++++||++.|+++|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~ 57 (422)
T PRK06915 3 QLKKQICDYIESHEEEAVKLLKRLIQEKSVSG--DESGAQAIVIEKLRELGLDLDIW 57 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhcCCeeEEe
Confidence 456666665543 456778888887665544 46899999999999999987543
No 132
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=57.73 E-value=20 Score=37.82 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHhhcC-------CCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 67 SNYTVSSYLRDLTHH-------PHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 67 ~~~~i~~~L~~Ls~~-------~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
+.+++.+.|+.|++. .|.+-++++.++++||.+.|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 59 (412)
T PRK12892 8 DGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID 59 (412)
T ss_pred cHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 345677778888763 346678888999999999999999988654
No 133
>PLN02693 IAA-amino acid hydrolase
Probab=56.52 E-value=46 Score=35.79 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (516)
+++.+..++|-+.|=+++. +.++++||.+.|+++|+++.
T Consensus 47 ~~~~~~r~~lh~~PE~s~~--E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 47 DWMVRIRRKIHENPELGYE--EFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred HHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHCCCeeE
Confidence 3466677777777878777 68999999999999999864
No 134
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=55.62 E-value=19 Score=40.33 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhcC-----------CCCCCChhhHHHHHHHHHHHHHCCC-ceeeeee
Q 010161 68 NYTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKF-NTHTVEY 113 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~-----------~r~aGt~g~~~~a~~i~~~~~~~Gl-~~~~~~y 113 (516)
.+++++.|+.|+.. .|++-|+++.++++|+.++|++.|| +++.+..
T Consensus 180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 36788889988872 2667799999999999999999999 7776654
No 135
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=52.21 E-value=24 Score=38.28 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
.+++.+.|+.|.+.++. |..+.++++|+.+.|++.|++++.++
T Consensus 3 ~~~~~~~l~~l~~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~~ 45 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRP--SKNEKEVSNFIVNWAKKLGLEVKQDE 45 (477)
T ss_pred HHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHHHHcCCeEEEeC
Confidence 45778899999998876 45578899999999999999986654
No 136
>PRK08652 acetylornithine deacetylase; Provisional
Probab=47.47 E-value=34 Score=34.91 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
+++.+.+++|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~~~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~v~~~~ 43 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQ--EDEIALHIMEFLESLGYDVHIES 43 (347)
T ss_pred hhHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCEEEEEe
Confidence 4566778888887666654 67899999999999999876543
No 137
>PRK07338 hypothetical protein; Provisional
Probab=47.41 E-value=44 Score=35.09 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeee
Q 010161 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
+++.+.|..|.+.+=.++. +|..+.++||+++|++.|++++..
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 60 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELI 60 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 4455667777765533333 345689999999999999987543
No 138
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=47.34 E-value=2.1e+02 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCCC----------ChhhHHHHHHHHHHHHHCCCceee
Q 010161 70 TVSSYLRDLTHHPHLAG----------TEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aG----------t~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
.+.+.|+.|-+.|=.++ .++..++++|+.+.|++.|+++..
T Consensus 14 ~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~ 64 (466)
T TIGR01886 14 ALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKN 64 (466)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEE
Confidence 45566777766432221 255678999999999999999754
No 139
>PRK05111 acetylornithine deacetylase; Provisional
Probab=45.39 E-value=40 Score=35.12 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHHHHHCCCceeeee
Q 010161 68 NYTVSSYLRDLTHHPHLAGTE-----PSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt~-----g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
.+.+.+.|++|-+.|-.++.+ ++.++++||++.|++.|++++..+
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 53 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQP 53 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEe
Confidence 456778888888877666653 246799999999999999876544
No 140
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=43.88 E-value=19 Score=37.62 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=23.4
Q ss_pred eeEeEEEEEEcCcCCCCcEEEEeecCCCCCC
Q 010161 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWTY 359 (516)
Q Consensus 329 ~~~~NVi~~i~G~~~~~~~viigaH~Ds~~~ 359 (516)
...-||+|.++|.....+.|++.||.|..+.
T Consensus 38 D~~GNvia~~~g~~~~~~~vml~AHmDeVGf 68 (350)
T TIGR03107 38 DGLGGIFGIKESQVENAPRVMVAAHMDEVGF 68 (350)
T ss_pred CCCCCEEEEecCCCCCCCEEEEEecccEeCE
Confidence 3568999998875112358999999999874
No 141
>PRK08596 acetylornithine deacetylase; Validated
Probab=42.41 E-value=49 Score=35.12 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHHHHHCCCceeeee
Q 010161 69 YTVSSYLRDLTHHPHLAGTE-PSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~-g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
+++.+.|+.|.+.|=.++.. ++.++++||+++|++.|++++.++
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 57 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWD 57 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677888888866555443 466889999999999999876544
No 142
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=41.14 E-value=55 Score=34.39 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 010161 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
.+++.+.|+.|-+.|=..+..++.++++||++.|+++|+++..
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~ 50 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKT 50 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeE
Confidence 4455567777777654444444578999999999999998753
No 143
>PRK09961 exoaminopeptidase; Provisional
Probab=40.32 E-value=23 Score=36.87 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.5
Q ss_pred eEeEEEEEEcCcCCCCcEEEEeecCCCCCC
Q 010161 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY 359 (516)
Q Consensus 330 ~~~NVi~~i~G~~~~~~~viigaH~Ds~~~ 359 (516)
..-||++.++|.. .+.|+|.||.|..+.
T Consensus 41 ~~Gnvi~~~~g~~--~~~v~l~aHmDevg~ 68 (344)
T PRK09961 41 GLGSVLIRLNEST--GPKVMICAHMDEVGF 68 (344)
T ss_pred CCCCEEEEEcCCC--CCEEEEEeccceece
Confidence 5689999988742 347999999998873
No 144
>PRK09133 hypothetical protein; Provisional
Probab=39.96 E-value=52 Score=35.51 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 010161 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (516)
.+.+.+.|+.|.+.+-.++..++.++++||.+.|++.|+++.
T Consensus 36 ~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~ 77 (472)
T PRK09133 36 QQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADA 77 (472)
T ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCce
Confidence 344556777777766555444578899999999999999863
No 145
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=37.77 E-value=36 Score=34.68 Aligned_cols=45 Identities=29% Similarity=0.277 Sum_probs=35.2
Q ss_pred hcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEe
Q 010161 178 EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (516)
Q Consensus 178 ~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~ 223 (516)
+-++.|.+.=..|+|||.+.-.|+.. +|.-+..|...||+||.+=
T Consensus 263 AtI~~L~Evv~aV~~ri~V~lDGGVR-~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 263 ATIEALPEVVKAVEGRIPVFLDGGVR-RGTDVLKALALGAKGVFIG 307 (363)
T ss_pred chHHHHHHHHHHhcCceEEEEecCcc-cchHHHHHHhcccceEEec
Confidence 33555554333589999999989888 8999999999999998754
No 146
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=36.24 E-value=68 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHHHHHCCCc-eeee
Q 010161 70 TVSSYLRDLTHHPHLAGT---EPSLDTVRYVQSHFEQLKFN-THTV 111 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGt---~g~~~~a~~i~~~~~~~Gl~-~~~~ 111 (516)
++.+.|++|.+.+=.+++ .++.++++||++.|+++|++ ++..
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~ 51 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERY 51 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEE
Confidence 466778888775444433 35789999999999999998 7543
No 147
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=36.01 E-value=68 Score=33.49 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeeee
Q 010161 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVEY 113 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~y 113 (516)
+++.+.|+.|.+.|=.++. .++.++++||+++|+++|++++..++
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~ 51 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEV 51 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4555677777775533322 34568999999999999998765543
No 148
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=35.59 E-value=55 Score=34.02 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCC-CChhhHHHHHHHHHHHHHCCCceeee
Q 010161 74 YLRDLTHHPHLA-GTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 74 ~L~~Ls~~~r~a-Gt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
.|++|.+.|-.+ .+.++.++++||+++|++.|++++..
T Consensus 3 ~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~ 41 (375)
T TIGR01910 3 LLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVI 41 (375)
T ss_pred hHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEE
Confidence 456666655432 35568899999999999999987554
No 149
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=35.31 E-value=72 Score=32.85 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
+++.+.|++|.+.|-.+| .+.++++|+.+.|++.|+++..++
T Consensus 6 ~~~~~~l~~Lv~i~s~s~--~e~~~~~~l~~~l~~~G~~~~~~~ 47 (348)
T PRK04443 6 LEARELLKGLVEIPSPSG--EEAAAAEFLVEFMESHGREAWVDE 47 (348)
T ss_pred HHHHHHHHHHHcCCCCCC--ChHHHHHHHHHHHHHcCCEEEEcC
Confidence 456778888888766555 467999999999999999876543
No 150
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=34.88 E-value=72 Score=33.19 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeE
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK 114 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 114 (516)
+.+.+.|+.|+.-+=.+|. +.+.++|+.+.|+++|++++.+.+-
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~--E~~V~~~l~~~l~~~g~ev~~D~~G 46 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGF--TDAVVRYVAERLEDLGIEYELTRRG 46 (343)
T ss_pred HHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHHcCCeEEECCCe
Confidence 4566778899987766666 5689999999999999998766553
No 151
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=33.97 E-value=1.2e+02 Score=27.60 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=43.1
Q ss_pred cccccCCCCCcceeEEEEcCCChhcHHHHH-HcCCcccCcEEEEEcCCccc---ch-hHHHHHHHcCCeEEEEeec
Q 010161 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALE-AAGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAE 225 (516)
Q Consensus 155 ~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvlv~~g~~~~---~~-~k~~~A~~~GA~gvIi~~d 225 (516)
.|..|++...+-|+.+=+.+. +|-..+. .....-.|+|+++..+.... .| .....|+.+|+.|+|+---
T Consensus 18 ~~~~~g~~~~i~G~A~TV~~~--~d~~~~~~ai~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~ 91 (150)
T TIGR01935 18 MFRNFGGRAAFAGPIVTVKCF--EDNSLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGC 91 (150)
T ss_pred hhhhcCCCCEEEEEEEEEEEE--CCcHHHHHHHhcCCCCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeec
Confidence 466788887787877666544 2211121 12234689999998654210 24 4566689999999987643
No 152
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=33.76 E-value=80 Score=32.76 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
++.+.|+.|.+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 3 ~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 43 (377)
T PRK08588 3 EKIQILADIVKINSVNDN--EIEVANYLQDLFAKHGIESKIVK 43 (377)
T ss_pred HHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCceEEEe
Confidence 455678888876666664 67899999999999999876543
No 153
>PRK06837 acetylornithine deacetylase; Provisional
Probab=33.40 E-value=90 Score=33.20 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
+++.+.|++|.+.|=.+ ..+.++++||++.|+++|++++.
T Consensus 20 ~~~~~~l~~li~ipS~s--~~e~~~~~~l~~~l~~~G~~~~~ 59 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTR--GAEAPCQDFLARAFRERGYEVDR 59 (427)
T ss_pred HHHHHHHHHHhccCCCC--CcHHHHHHHHHHHHHHCCCceEE
Confidence 34556677777655444 45678999999999999998754
No 154
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=33.03 E-value=1.7e+02 Score=27.05 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=44.6
Q ss_pred ccccccCCCCCcceeEEEEcCCChhcHHHHHH-cCCcccCcEEEEEcCCccc---ch-hHHHHHHHcCCeEEEEeecC
Q 010161 154 QPYHAYSPSGSAYGKVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAEW 226 (516)
Q Consensus 154 ~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~-~gv~v~GkIvlv~~g~~~~---~~-~k~~~A~~~GA~gvIi~~dp 226 (516)
+.|..|++.-.+-|+.+=|.... |-..+.+ ....-.|+|+++..+.... .| .....|..+|++|+|+.---
T Consensus 21 ~~~~~~g~~~~~~G~A~TV~~~~--d~~~~~~aid~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG~v 96 (161)
T TIGR02998 21 PIFSNFGGRSSFGGKVVTVKCFE--HNGLINELLEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYGAV 96 (161)
T ss_pred ccccccCCCCEEEEEEEEEEeeC--CcHHHHHHHhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEeecc
Confidence 34778888777788887775443 2111211 2234579999988654210 13 45566899999999987543
No 155
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=32.79 E-value=56 Score=33.81 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 010161 72 SSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 72 ~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
.+.+++|.+.|..+|- +.++++||.+.|+++|+++..
T Consensus 2 ~~~~~~L~~ips~s~~--E~~~a~~l~~~l~~~g~~~~~ 38 (363)
T TIGR01891 2 TDIRRHLHEHPELSFE--EFKTSSLIAEALESLGIEVRR 38 (363)
T ss_pred hHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCceEe
Confidence 3578888888888875 689999999999999998753
No 156
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=32.53 E-value=63 Score=33.26 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 71 VSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 71 i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
+.+.|++|.+.|=.+| .+.++++||++.|+++|+++...+
T Consensus 2 ~~~~~~~l~~i~s~s~--~e~~~~~~l~~~l~~~g~~~~~~~ 41 (361)
T TIGR01883 2 LKKYFLELIQIDSESG--KEKAILTYLKKQITKLGIPVSLDE 41 (361)
T ss_pred hHHHHHHHeecCCCCC--cHHHHHHHHHHHHHHcCCEEEEec
Confidence 5667788887665554 467999999999999999875543
No 157
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=32.48 E-value=1e+02 Score=31.69 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
+++.+.|+.|-+.+= .|..+.++++||++.|++.|+++..++
T Consensus 10 ~~~~~~l~~lv~i~s--~s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 10 QKAKELLLDLLSIYT--PSGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 466777888877543 344567899999999999999876544
No 158
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=31.44 E-value=1.1e+02 Score=27.03 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=31.7
Q ss_pred ceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCccc-chhHHHHHHHcCCe-EEEEeecC
Q 010161 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLS-RSGVIFLAEAKGAI-GVLLYAEW 226 (516)
Q Consensus 166 ~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~-~~~k~~~A~~~GA~-gvIi~~dp 226 (516)
+|.++..+ -|+. |.+++|||+++.+++-.. -+.....+.++|-+ +.|++.+.
T Consensus 27 tG~iid~~----H~l~-----G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~~ 80 (123)
T cd01356 27 TGKVIDPH----HPLY-----GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEEA 80 (123)
T ss_pred CCeEeeCC----CCcC-----CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecCc
Confidence 57777643 2333 789999999999876431 13344455555543 66666554
No 159
>PRK05469 peptidase T; Provisional
Probab=31.20 E-value=88 Score=32.98 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCCC--------hhhHHHHHHHHHHHHHCCCc-eeeeeeE
Q 010161 71 VSSYLRDLTHHPHLAGT--------EPSLDTVRYVQSHFEQLKFN-THTVEYK 114 (516)
Q Consensus 71 i~~~L~~Ls~~~r~aGt--------~g~~~~a~~i~~~~~~~Gl~-~~~~~y~ 114 (516)
+.+.|++|.+.+=.++. ++..++++||+++|++.|++ +..++..
T Consensus 4 ~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~ 56 (408)
T PRK05469 4 LLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENG 56 (408)
T ss_pred HHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCe
Confidence 44566666653222222 67899999999999999997 5555544
No 160
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=31.05 E-value=1.1e+02 Score=32.53 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=29.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHCCCc-eeeee-e-EEEEeeec
Q 010161 82 PHLAGTEPSLDTVRYVQSHFEQLKFN-THTVE-Y-KALLSYPV 121 (516)
Q Consensus 82 ~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~-y-~v~~~~p~ 121 (516)
.....++++++.++|++++|+++|++ ++.++ + .|+...|.
T Consensus 24 ~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~ 66 (410)
T TIGR01882 24 DTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPS 66 (410)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecC
Confidence 34555778889999999999999997 87765 3 34444455
No 161
>PRK07522 acetylornithine deacetylase; Provisional
Probab=30.19 E-value=91 Score=32.37 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
..+.+.|+.|.+.|-.+|-+ ..++++||.++|+++|++++.
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~ 44 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDS-NLALIEWVRDYLAAHGVESEL 44 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCc-cHHHHHHHHHHHHHcCCeEEE
Confidence 34667788888877666532 248999999999999998754
No 162
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=28.59 E-value=44 Score=35.75 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=36.3
Q ss_pred cChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCcee
Q 010161 66 SSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (516)
Q Consensus 66 ~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 109 (516)
+..+++.++..+|++-||.++- +.+.+.|+.++++..|+.+.
T Consensus 2 ~~~~~l~~~F~~~~kI~~~S~~--e~~~~p~~~~~~k~~~~~v~ 43 (414)
T COG2195 2 LKMERLLDRFLELVKIPTQSKH--EKAVAPSTVGQAKLLGLLVE 43 (414)
T ss_pred cchHHHHHHHHHHeeCCCCCCC--ccccccccHHHHHHcCchhh
Confidence 3566788888899999999887 78999999999999999875
No 163
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=27.29 E-value=3.3e+02 Score=23.78 Aligned_cols=42 Identities=24% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCcccCcEEEEEcCCccc-chhHHHHHHHcCCeEEEEeecCCC
Q 010161 187 GVNVSGCVVMARKGSVLS-RSGVIFLAEAKGAIGVLLYAEWDR 228 (516)
Q Consensus 187 gv~v~GkIvlv~~g~~~~-~~~k~~~A~~~GA~gvIi~~dp~~ 228 (516)
.+...-.|-++|..-... .-.-+..|.+.||.||++...+.+
T Consensus 22 ~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g 64 (124)
T PF02662_consen 22 RLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPG 64 (124)
T ss_pred cCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 345556688887542110 245688899999999999987643
No 164
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=26.17 E-value=2.2e+02 Score=26.14 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=39.4
Q ss_pred ccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcc---cchh-HHHHHHHcCCeEEEEeec
Q 010161 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL---SRSG-VIFLAEAKGAIGVLLYAE 225 (516)
Q Consensus 156 ~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~---~~~~-k~~~A~~~GA~gvIi~~d 225 (516)
+.++.+...+-|+.+=+.+. .++....+.....-.|+|+++..+... -.|+ ....|+.+|++|+|+---
T Consensus 23 i~~~~~~~~~~G~A~TV~~~-~d~~~~~~~i~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~ 95 (159)
T PRK09372 23 FSSFGGRSSFGGPITTVKCF-EDNGLVKELLEEPGEGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVYGC 95 (159)
T ss_pred ccccCCCCEEEEEEEEEEEe-CCcHHHHHHHhcCCCCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEeccc
Confidence 33455555666766555443 121111111233568999999865421 0244 456688999999987643
No 165
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=25.53 E-value=1.5e+02 Score=31.18 Aligned_cols=33 Identities=33% Similarity=0.197 Sum_probs=23.2
Q ss_pred ccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEe
Q 010161 190 VSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (516)
Q Consensus 190 v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~ 223 (516)
+.++|-|+-.|++. ++..+..|...||.+|.+-
T Consensus 280 v~~~i~vi~dGGIr-~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 280 VDKRVPIVFDSGVR-RGQHVFKALASGADLVALG 312 (367)
T ss_pred hCCCCcEEeeCCcC-CHHHHHHHHHcCCCEEEEc
Confidence 34566666667777 7777777777888887764
No 166
>PRK06446 hypothetical protein; Provisional
Probab=25.08 E-value=1.4e+02 Score=31.78 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHCCCceeeee
Q 010161 70 TVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVE 112 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (516)
++.+.|+.|-+.+=.++. ++..++++||++.|++.|++++..+
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~ 46 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIER 46 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345567777765434432 2337899999999999999876543
No 167
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=24.33 E-value=1.3e+02 Score=30.84 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHC-CCceee
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQL-KFNTHT 110 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~-Gl~~~~ 110 (516)
+++.+.+++|-+.|-.+|. +.+.++||+++|++. |+++..
T Consensus 7 ~~~~~~l~~li~ips~s~~--e~~~~~~l~~~l~~~~~~~~~~ 47 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGD--EKALADAVEAALRALPHLEVIR 47 (352)
T ss_pred HHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHhCcCceEEe
Confidence 4677889999988877775 678999999999995 887643
No 168
>PRK07473 carboxypeptidase; Provisional
Probab=23.42 E-value=1.8e+02 Score=30.37 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhcCCCCCCChhh-HHHHHHHHHHHHHCCCceeee
Q 010161 68 NYTVSSYLRDLTHHPHLAGTEPS-LDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGt~g~-~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
.+++.+.|+.|.+.+=.++.+.+ .+.++|+.+.|++.|++++..
T Consensus 10 ~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 54 (376)
T PRK07473 10 SEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERI 54 (376)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 44566777788776555555333 467889999999999987653
No 169
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=23.38 E-value=1.3e+02 Score=21.30 Aligned_cols=26 Identities=12% Similarity=-0.091 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCC
Q 010161 18 PPLMTFTFLLILCIIGFYTLHHPYPS 43 (516)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (516)
.+++++++++++.++-|+.+..+...
T Consensus 10 fi~~T~fYf~Ill~L~ylYgy~g~~~ 35 (42)
T PF12459_consen 10 FIGKTLFYFAILLALIYLYGYSGIGQ 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 56679999999888888777655443
No 170
>PRK07906 hypothetical protein; Provisional
Probab=22.19 E-value=1.2e+02 Score=32.26 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHHHHCCCceeee
Q 010161 87 TEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 87 t~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
++++.++++||.++|++.|++++..
T Consensus 21 ~~~e~~~~~~l~~~l~~~G~~~~~~ 45 (426)
T PRK07906 21 GKGEREAAEYVAEKLAEVGLEPTYL 45 (426)
T ss_pred CchHHHHHHHHHHHHHhCCCCeEEe
Confidence 3678899999999999999997654
No 171
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=21.72 E-value=1.4e+02 Score=30.78 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeee
Q 010161 71 VSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (516)
Q Consensus 71 i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (516)
+.+.|++|-+.|=.+ +.+.++++||.+.|++.|++++..
T Consensus 4 ~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~ 42 (375)
T PRK13009 4 VLELAQDLIRRPSVT--PDDAGCQDLLAERLEALGFTCERM 42 (375)
T ss_pred HHHHHHHHhCCCCCC--CchhhHHHHHHHHHHHcCCeEEEe
Confidence 445677777654333 456889999999999999987643
No 172
>PLN02280 IAA-amino acid hydrolase
Probab=20.70 E-value=2e+02 Score=31.29 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceee
Q 010161 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 110 (516)
.+.+..++++..|=.++- +.++++||.+.|+++|+++..
T Consensus 98 ~l~~l~r~lh~~PEls~~--E~~t~~~i~~~L~~~G~~~~~ 136 (478)
T PLN02280 98 WLKSVRRKIHENPELAFE--EYKTSELVRSELDRMGIMYRY 136 (478)
T ss_pred HHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCeEEe
Confidence 344555556665655544 689999999999999998653
No 173
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=20.67 E-value=1.3e+02 Score=29.51 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=31.3
Q ss_pred ceeEEEEcCCC--hhcH-HHHHHcCCcccCcEEEEEcCCcccchhHHHHHHHcCCeEEEEe
Q 010161 166 YGKVVFVNYGR--EEDY-RALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (516)
Q Consensus 166 ~g~lVyv~~G~--~~D~-~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~ 223 (516)
--+++|..||+ ..+- +...+.--.+.. +.|+--|++. ..++++.+.++||..|++=
T Consensus 153 g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~-~~LivGGGIr-s~e~A~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 153 GMPIIYLEAGSGAYGPVPEEVIAAVKKLSD-IPLIVGGGIR-SPEQAREMAEAGADTIVVG 211 (230)
T ss_dssp T-SEEEEE--TTSSS-HHHHHHHHHHHSSS-SEEEEESS---SHHHHHHHHCTTSSEEEES
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHhcCC-ccEEEeCCcC-CHHHHHHHHHCCCCEEEEC
Confidence 35799998854 4444 222221112333 4444446677 7899999999999988764
No 174
>PRK13004 peptidase; Reviewed
Probab=20.31 E-value=1.9e+02 Score=30.40 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCce
Q 010161 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT 108 (516)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~ 108 (516)
+++.+.|++|.+.|=.+|. +.++++||.+.|+++|+++
T Consensus 15 ~~~~~~l~~lv~ips~s~~--e~~~a~~l~~~l~~~G~~~ 52 (399)
T PRK13004 15 ADMTRFLRDLIRIPSESGD--EKRVVKRIKEEMEKVGFDK 52 (399)
T ss_pred HHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCcE
Confidence 4577788888887766654 6789999999999999974
No 175
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=20.10 E-value=1.8e+02 Score=30.42 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCceeeeeeE
Q 010161 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK 114 (516)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 114 (516)
.+.+.|++|+.-+=.+|- +.+..+|++++|++++.+++.+..-
T Consensus 3 ~~~~~LkeL~~~~gpsG~--E~eVr~~~~~el~~~~~ev~~D~lG 45 (355)
T COG1363 3 ELLELLKELLEAPGPSGY--EEEVRDVLKEELEPLGDEVEVDRLG 45 (355)
T ss_pred HHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHHHhCCceEEcCCC
Confidence 467789999998777887 5669999999999999998777654
Done!