Your job contains 1 sequence.
>010162
MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV
IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK
EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII
CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV
FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG
RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC
EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNM
GEWGVVDRALLGGMLVSFLIILALLIHVGFRTLSTK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010162
(516 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030342 - symbol:AT1G72090 species:3702 "Arabi... 1672 1.3e-178 2
UNIPROTKB|Q291H5 - symbol:GA19679 "Threonylcarbamoyladeno... 1089 2.9e-110 1
FB|FBgn0034214 - symbol:CG6550 species:7227 "Drosophila m... 1072 1.9e-108 1
UNIPROTKB|E1BRH0 - symbol:CDKAL1 "Uncharacterized protein... 1063 1.7e-107 1
UNIPROTKB|Q5VV42 - symbol:CDKAL1 "Threonylcarbamoyladenos... 1056 9.2e-107 1
UNIPROTKB|F1MAW5 - symbol:CDKAL1 "Uncharacterized protein... 1050 4.0e-106 1
UNIPROTKB|F1RUG0 - symbol:CDKAL1 "Uncharacterized protein... 1048 6.5e-106 1
UNIPROTKB|E2RAI1 - symbol:CDKAL1 "CDK5 regulatory subunit... 1044 1.7e-105 1
MGI|MGI:1921765 - symbol:Cdkal1 "CDK5 regulatory subunit ... 1041 3.6e-105 1
ZFIN|ZDB-GENE-040426-1443 - symbol:cdkal1 "CDK5 regulator... 1030 5.3e-104 1
WB|WBGene00022363 - symbol:Y92H12BL.1 species:6239 "Caeno... 929 2.7e-93 1
UNIPROTKB|F1LV76 - symbol:F1LV76 "Uncharacterized protein... 594 8.4e-58 1
UNIPROTKB|Q81LS6 - symbol:BAS4209 "Uncharacterized protei... 431 1.6e-40 1
TIGR_CMR|BA_4535 - symbol:BA_4535 "conserved hypothetical... 431 1.6e-40 1
UNIPROTKB|P54462 - symbol:mtaB "Threonylcarbamoyladenosin... 429 2.6e-40 1
TIGR_CMR|CHY_0419 - symbol:CHY_0419 "MiaB-like tRNA modif... 415 7.8e-39 1
TIGR_CMR|CHY_1398 - symbol:CHY_1398 "tRNA-i(6)A37 thiotra... 397 6.3e-37 1
UNIPROTKB|Q74A23 - symbol:mtaB "tRNA (2-methylthio-N6-thr... 389 4.4e-36 1
TIGR_CMR|GSU_2568 - symbol:GSU_2568 "MiaB-like tRNA modif... 389 4.4e-36 1
UNIPROTKB|O31778 - symbol:miaB "(Dimethylallyl)adenosine ... 388 5.7e-36 1
UNIPROTKB|Q81WR0 - symbol:miaB "(Dimethylallyl)adenosine ... 378 6.5e-35 1
TIGR_CMR|BA_3908 - symbol:BA_3908 "conserved hypothetical... 378 6.5e-35 1
UNIPROTKB|Q83DX3 - symbol:miaB "(Dimethylallyl)adenosine ... 362 3.2e-33 1
UNIPROTKB|Q9KTE0 - symbol:miaB "(Dimethylallyl)adenosine ... 362 3.2e-33 1
TIGR_CMR|CBU_0569 - symbol:CBU_0569 "conserved hypothetic... 362 3.2e-33 1
TIGR_CMR|VC_0962 - symbol:VC_0962 "conserved hypothetical... 362 3.2e-33 1
UNIPROTKB|P0AEI1 - symbol:miaB "isopentenyl-adenosine A37... 361 4.1e-33 1
UNIPROTKB|Q74B44 - symbol:miaB "(Dimethylallyl)adenosine ... 353 2.9e-32 1
TIGR_CMR|GSU_2198 - symbol:GSU_2198 "tRNA-i(6)A37 modific... 353 2.9e-32 1
UNIPROTKB|Q747R0 - symbol:rimO "Ribosomal protein S12 met... 352 3.7e-32 1
TIGR_CMR|GSU_3205 - symbol:GSU_3205 "MiaB-like tRNA modif... 352 3.7e-32 1
UNIPROTKB|Q607P8 - symbol:MCA1711 "Putative uncharacteriz... 346 1.6e-31 1
UNIPROTKB|Q608N1 - symbol:miaB "(Dimethylallyl)adenosine ... 335 9.5e-30 1
TIGR_CMR|SO_1181 - symbol:SO_1181 "tRNA-i(6)A37 modificat... 339 1.5e-29 1
TIGR_CMR|ECH_0837 - symbol:ECH_0837 "tRNA-i(6)A37 modific... 329 1.6e-29 1
TIGR_CMR|SPO_A0002 - symbol:SPO_A0002 "tRNA-i(6)A37 thiot... 329 1.6e-29 1
TIGR_CMR|CJE_0508 - symbol:CJE_0508 "tRNA-i(6)A37 thiotra... 321 1.4e-28 1
TIGR_CMR|DET_0962 - symbol:DET_0962 "tRNA modification en... 319 2.3e-28 1
TIGR_CMR|NSE_0832 - symbol:NSE_0832 "tRNA-i(6)A37 modific... 327 7.5e-28 1
TIGR_CMR|DET_1385 - symbol:DET_1385 "tRNA-i(6)A37 thiotra... 311 1.9e-27 1
TIGR_CMR|CHY_1164 - symbol:CHY_1164 "MiaB-like tRNA modif... 313 1.5e-26 1
TIGR_CMR|APH_0880 - symbol:APH_0880 "tRNA-i(6)A37 thiotra... 303 5.1e-25 1
TIGR_CMR|CPS_3572 - symbol:CPS_3572 "tRNA-i(6)A37 thiotra... 297 5.6e-24 1
FB|FBgn0037816 - symbol:CG6345 species:7227 "Drosophila m... 240 1.4e-22 2
TIGR_CMR|NSE_0785 - symbol:NSE_0785 "tRNA modification en... 278 4.9e-22 1
UNIPROTKB|Q2GHP3 - symbol:ECH_0217 "tRNA modification enz... 276 5.8e-22 1
TIGR_CMR|ECH_0217 - symbol:ECH_0217 "tRNA modification en... 276 5.8e-22 1
ZFIN|ZDB-GENE-070424-90 - symbol:zgc:162738 "zgc:162738" ... 217 1.8e-20 2
UNIPROTKB|F1NZV3 - symbol:CDK5RAP1 "Uncharacterized prote... 217 1.3e-19 2
UNIPROTKB|Q60CM4 - symbol:rimO "Ribosomal protein S12 met... 252 6.6e-19 1
TAIR|locus:2115410 - symbol:AT4G36390 species:3702 "Arabi... 177 1.0e-18 2
UNIPROTKB|F1S500 - symbol:CDK5RAP1 "Uncharacterized prote... 196 6.0e-18 2
UNIPROTKB|E2QYD7 - symbol:CDK5RAP1 "Uncharacterized prote... 198 8.9e-18 2
DICTYBASE|DDB_G0287079 - symbol:DDB_G0287079 "CDK5 regula... 207 1.4e-17 2
MGI|MGI:1914221 - symbol:Cdk5rap1 "CDK5 regulatory subuni... 195 4.1e-17 2
UNIPROTKB|Q08DN3 - symbol:CDK5RAP1 "CDK5 regulatory subun... 188 5.8e-17 3
TIGR_CMR|CJE_1086 - symbol:CJE_1086 "MiaB-like tRNA modif... 233 8.3e-17 1
RGD|708387 - symbol:Cdk5rap1 "CDK5 regulatory subunit ass... 191 1.1e-16 2
TIGR_CMR|SPO_0277 - symbol:SPO_0277 "MiaB-like tRNA modif... 229 2.4e-16 1
UNIPROTKB|Q48FA7 - symbol:rimO "Ribosomal protein S12 met... 226 6.7e-16 1
UNIPROTKB|Q9KNW0 - symbol:rimO "Ribosomal protein S12 met... 224 1.3e-15 1
TIGR_CMR|VC_2620 - symbol:VC_2620 "conserved hypothetical... 224 1.3e-15 1
UNIPROTKB|P0AEI4 - symbol:rimO "ribosomal protein S12 D88... 223 1.4e-15 1
UNIPROTKB|Q87Y01 - symbol:rimO "Ribosomal protein S12 met... 222 1.9e-15 1
WB|WBGene00017776 - symbol:F25B5.5 species:6239 "Caenorha... 170 2.4e-15 2
UNIPROTKB|Q09316 - symbol:F25B5.5 "CDK5RAP1-like protein"... 170 2.4e-15 2
UNIPROTKB|Q8EA37 - symbol:rimO "Ribosomal protein S12 met... 220 3.9e-15 1
TIGR_CMR|SO_4072 - symbol:SO_4072 "MiaB-like putative RNA... 220 3.9e-15 1
TIGR_CMR|CJE_1627 - symbol:CJE_1627 "MiaB-like tRNA modif... 218 5.1e-15 1
UNIPROTKB|E2RIW1 - symbol:CDK5RAP1 "Uncharacterized prote... 160 1.6e-13 2
UNIPROTKB|Q96SZ6 - symbol:CDK5RAP1 "CDK5 regulatory subun... 192 2.6e-13 2
TIGR_CMR|SPO_0944 - symbol:SPO_0944 "RNA modification enz... 166 3.7e-09 1
UNIPROTKB|H0Y721 - symbol:CDK5RAP1 "CDK5 regulatory subun... 143 2.9e-07 1
UNIPROTKB|Q74FM0 - symbol:yhcC-2 "Radical SAM domain iron... 130 1.7e-05 1
TIGR_CMR|GSU_0586 - symbol:GSU_0586 "radical SAM protein,... 130 1.7e-05 1
UNIPROTKB|Q675N4 - symbol:CDK5RAP1 "CDK5 regulatory subun... 87 0.00075 2
>TAIR|locus:2030342 [details] [associations]
symbol:AT1G72090 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005783
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020 GO:GO:0016740
GO:GO:0051539 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:DVPAFTD EMBL:AC069273 EMBL:AF367274
EMBL:BT002712 IPI:IPI00526826 PIR:B96744 RefSeq:NP_565035.1
UniGene:At.17477 ProteinModelPortal:Q9C7H2 SMR:Q9C7H2 PaxDb:Q9C7H2
PRIDE:Q9C7H2 ProMEX:Q9C7H2 EnsemblPlants:AT1G72090.1 GeneID:843540
KEGG:ath:AT1G72090 TAIR:At1g72090 InParanoid:Q9C7H2
PhylomeDB:Q9C7H2 ProtClustDB:CLSN2689155 Genevestigator:Q9C7H2
Uniprot:Q9C7H2
Length = 601
Score = 1672 (593.6 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 320/381 (83%), Positives = 347/381 (91%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAF PY GME R ERIWITE+A DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 361 RWSVFGEVIKILNQVDDKIAS 381
RWSVFGEVI+ + + + S
Sbjct: 479 RWSVFGEVIETFSSANRETKS 499
Score = 84 (34.6 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 470 KKKQEWM--GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
K+ QE + G ++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 554 KEVQEVVVPGSSVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>UNIPROTKB|Q291H5 [details] [associations]
symbol:GA19679 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:46245 "Drosophila pseudoobscura
pseudoobscura" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 EMBL:CM000071
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
OMA:TLKGHSV OrthoDB:EOG4W3R39 Pfam:PF01938 RefSeq:XP_001360562.1
ProteinModelPortal:Q291H5 GeneID:4803921 KEGG:dpo:Dpse_GA19679
FlyBase:FBgn0079675 InParanoid:Q291H5 Uniprot:Q291H5
Length = 553
Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
Identities = 211/364 (57%), Positives = 267/364 (73%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA---- 68
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 138 KHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVA 197
Query: 69 ---LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 198 GAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVDRARQSFAEGC 257
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+V
Sbjct: 258 CEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPEH--CMLRVGMTNPPYILEHLEEVAKV 315
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 316 LQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPT 375
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 376 ETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYE 435
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITSV ++S+
Sbjct: 436 PYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKFSMV 495
Query: 366 GEVI 369
GE++
Sbjct: 496 GEIL 499
>FB|FBgn0034214 [details] [associations]
symbol:CG6550 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE013599 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
EMBL:AY051634 RefSeq:NP_611207.1 UniGene:Dm.4535
ProteinModelPortal:Q7K4W1 SMR:Q7K4W1 STRING:Q7K4W1 PaxDb:Q7K4W1
PRIDE:Q7K4W1 EnsemblMetazoa:FBtr0086961 GeneID:36954
KEGG:dme:Dmel_CG6550 UCSC:CG6550-RA FlyBase:FBgn0034214
InParanoid:Q7K4W1 OMA:TLKGHSV OrthoDB:EOG4W3R39 PhylomeDB:Q7K4W1
GenomeRNAi:36954 NextBio:801207 Bgee:Q7K4W1 Pfam:PF01938
Uniprot:Q7K4W1
Length = 552
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 208/365 (56%), Positives = 264/365 (72%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL KK
Sbjct: 137 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRV 196
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 197 AGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 256
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A
Sbjct: 257 CCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEH--CMLRVGMTNPPYILEHLEEVAN 314
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 315 VLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFP 374
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR++ LT +F ++
Sbjct: 375 TETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSY 434
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G + + +TE++ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 435 EPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSM 494
Query: 365 FGEVI 369
GE++
Sbjct: 495 VGEIL 499
>UNIPROTKB|E1BRH0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV
Pfam:PF01938 EMBL:AADN02027453 EMBL:AADN02027454 EMBL:AADN02027455
EMBL:AADN02027456 EMBL:AADN02027457 EMBL:AADN02027458
EMBL:AADN02027459 EMBL:AADN02027460 EMBL:AADN02027461
EMBL:AADN02027462 EMBL:AADN02027463 EMBL:AADN02027464
EMBL:AADN02027465 EMBL:AADN02027466 EMBL:AADN02027467
EMBL:AADN02027468 EMBL:AADN02027469 EMBL:AADN02027470
EMBL:AADN02027471 IPI:IPI00574581 ProteinModelPortal:E1BRH0
Ensembl:ENSGALT00000020688 ArrayExpress:E1BRH0 Uniprot:E1BRH0
Length = 568
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 209/372 (56%), Positives = 271/372 (72%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 121 IKKAQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 180
Query: 65 K-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 181 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA 240
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILE
Sbjct: 241 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILE 298
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IAT
Sbjct: 299 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIAT 358
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L
Sbjct: 359 DIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDL 418
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V I
Sbjct: 419 SQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEVNIY 478
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 479 EAGKHFMKGQPV 490
>UNIPROTKB|Q5VV42 [details] [associations]
symbol:CDKAL1 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:9606 "Homo sapiens" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 MIM:125853
EMBL:CH471087 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712
KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:AK000349 EMBL:AK128546 EMBL:AK291735 EMBL:AL513188
EMBL:AL022717 EMBL:AL033521 EMBL:AL035090 EMBL:AL451080
EMBL:AL512405 EMBL:AL513015 EMBL:AL513549 EMBL:BC064145
EMBL:BC121020 EMBL:BC121021 IPI:IPI00015713 IPI:IPI00443485
IPI:IPI00855838 RefSeq:NP_060244.2 UniGene:Hs.657604
ProteinModelPortal:Q5VV42 SMR:Q5VV42 STRING:Q5VV42
PhosphoSite:Q5VV42 DMDM:74747199 PaxDb:Q5VV42 PeptideAtlas:Q5VV42
PRIDE:Q5VV42 Ensembl:ENST00000274695 Ensembl:ENST00000378610
Ensembl:ENST00000378624 GeneID:54901 KEGG:hsa:54901 UCSC:uc003ndb.1
UCSC:uc003ndd.2 UCSC:uc003nde.2 GeneCards:GC06P020534
HGNC:HGNC:21050 HPA:HPA014374 MIM:611259 neXtProt:NX_Q5VV42
PharmGKB:PA134871999 InParanoid:Q5VV42 OMA:CPDITLR
OrthoDB:EOG4RJG1D PhylomeDB:Q5VV42 ChiTaRS:CDKAL1 GenomeRNAi:54901
NextBio:57928 Bgee:Q5VV42 CleanEx:HS_CDKAL1 Genevestigator:Q5VV42
Uniprot:Q5VV42
Length = 579
Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
Identities = 207/372 (55%), Positives = 272/372 (73%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 K-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>UNIPROTKB|F1MAW5 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:DAAA02055585
EMBL:DAAA02055586 EMBL:DAAA02055587 EMBL:DAAA02055588
IPI:IPI00826239 RefSeq:NP_001179620.1 UniGene:Bt.68904
ProteinModelPortal:F1MAW5 Ensembl:ENSBTAT00000017811 GeneID:530159
KEGG:bta:530159 NextBio:20875192 Uniprot:F1MAW5
Length = 578
Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 205/372 (55%), Positives = 271/372 (72%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 K-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKEL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRIFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>UNIPROTKB|F1RUG0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:CT841541
EMBL:CT842529 EMBL:CT954244 EMBL:CT956009 EMBL:CU326401
RefSeq:XP_003128247.3 UniGene:Ssc.32559 ProteinModelPortal:F1RUG0
Ensembl:ENSSSCT00000001175 GeneID:100512355 KEGG:ssc:100512355
Uniprot:F1RUG0
Length = 578
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 205/372 (55%), Positives = 270/372 (72%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 K-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>UNIPROTKB|E2RAI1 [details] [associations]
symbol:CDKAL1 "CDK5 regulatory subunit-associated protein
1-like 1" species:9615 "Canis lupus familiaris" [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:AAEX03017586
EMBL:AAEX03017587 EMBL:AB720723 RefSeq:XP_849433.1
Ensembl:ENSCAFT00000016240 GeneID:488240 KEGG:cfa:488240
Uniprot:E2RAI1
Length = 578
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 202/372 (54%), Positives = 267/372 (71%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPGTPAA+M +VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPAAKMVQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>MGI|MGI:1921765 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein
1-like 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 MGI:MGI:1921765 GO:GO:0016021
GO:GO:0005789 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0008033 eggNOG:COG0621 GeneTree:ENSGT00530000063447
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712 KO:K15865
GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938
OrthoDB:EOG4RJG1D EMBL:AK004490 EMBL:AK041864 EMBL:AK045506
EMBL:AK082629 EMBL:AK169761 EMBL:AL513025 EMBL:AL512647
EMBL:AL589701 EMBL:AL645587 EMBL:BC016073 IPI:IPI00163015
IPI:IPI00515329 IPI:IPI00648337 IPI:IPI00857573 IPI:IPI00857859
RefSeq:NP_653119.1 UniGene:Mm.212227 ProteinModelPortal:Q91WE6
STRING:Q91WE6 PhosphoSite:Q91WE6 PRIDE:Q91WE6 DNASU:68916
Ensembl:ENSMUST00000006353 Ensembl:ENSMUST00000091674
Ensembl:ENSMUST00000137225 Ensembl:ENSMUST00000140278 GeneID:68916
KEGG:mmu:68916 UCSC:uc007pyn.1 UCSC:uc007pyo.1 UCSC:uc007pyp.1
InParanoid:Q91WE6 NextBio:328171 Bgee:Q91WE6 Genevestigator:Q91WE6
Uniprot:Q91WE6
Length = 578
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 205/372 (55%), Positives = 270/372 (72%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 K-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>ZFIN|ZDB-GENE-040426-1443 [details] [associations]
symbol:cdkal1 "CDK5 regulatory subunit associated
protein 1-like 1" species:7955 "Danio rerio" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 ZFIN:ZDB-GENE-040426-1443 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 EMBL:BC057248 IPI:IPI00510915 RefSeq:NP_956921.1
UniGene:Dr.118384 ProteinModelPortal:Q6PG34 PRIDE:Q6PG34
GeneID:393600 KEGG:dre:393600 CTD:54901 HOVERGEN:HBG097712
InParanoid:Q6PG34 KO:K15865 NextBio:20814618 ArrayExpress:Q6PG34
GO:GO:0009451 TIGRFAMs:TIGR00089 Uniprot:Q6PG34
Length = 547
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 202/373 (54%), Positives = 268/373 (71%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ + ++ +SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 118 IRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQK 177
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV RV
Sbjct: 178 KEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERV 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P +G+ MLR+GMTNPP+ILE
Sbjct: 238 RQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEEIP-EGA-MLRLGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E++ +L+HP V+SFLHVP+QS SD+VL M REY +DF +VD L E VPG+ IAT
Sbjct: 296 HLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCCADFTHLVDYLKERVPGITIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPGTPAA M+++P+ V K+R++EL
Sbjct: 356 DIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPGTPAALMQQLPAHVKKQRTKEL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++F ++ PY G +++ +TE + D + V H K Y QVLVP LG V++
Sbjct: 416 SALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEVY 475
Query: 358 SVGRWSVFGEVIK 370
G+ + G ++
Sbjct: 476 ECGKHYMKGRPLE 488
>WB|WBGene00022363 [details] [associations]
symbol:Y92H12BL.1 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR020612 Pfam:PF04055 PROSITE:PS01278
SMART:SM00729 GO:GO:0016021 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0008033 EMBL:FO081632 RefSeq:NP_740783.2
ProteinModelPortal:Q8MXQ7 SMR:Q8MXQ7 STRING:Q8MXQ7 PaxDb:Q8MXQ7
EnsemblMetazoa:Y92H12BL.1 GeneID:190786 KEGG:cel:CELE_Y92H12BL.1
UCSC:Y92H12BL.1 CTD:190786 WormBase:Y92H12BL.1 eggNOG:COG0621
GeneTree:ENSGT00530000063447 HOGENOM:HOG000224768 InParanoid:Q8MXQ7
OMA:ILVPLEY NextBio:946956 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 Uniprot:Q8MXQ7
Length = 425
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 185/358 (51%), Positives = 254/358 (70%)
Query: 17 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 75
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 134
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 194
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 313
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ + I
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISKPASI 356
>UNIPROTKB|F1LV76 [details] [associations]
symbol:F1LV76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
IPI:IPI00190732 ProteinModelPortal:F1LV76
Ensembl:ENSRNOT00000024854 Uniprot:F1LV76
Length = 164
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 111/166 (66%), Positives = 140/166 (84%)
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 1 GVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMA 58
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 59 KILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 118
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V
Sbjct: 119 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHV 164
>UNIPROTKB|Q81LS6 [details] [associations]
symbol:BAS4209 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 122/361 (33%), Positives = 186/361 (51%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
Y EG V I E +G VG+T Y++++ + ++G VKI
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKIMKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>TIGR_CMR|BA_4535 [details] [associations]
symbol:BA_4535 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 122/361 (33%), Positives = 186/361 (51%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
Y EG V I E +G VG+T Y++++ + ++G VKI
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKIMKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>UNIPROTKB|P54462 [details] [associations]
symbol:mtaB "Threonylcarbamoyladenosine tRNA
methylthiotransferase MtaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035598 "N6-threonylcarbomyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:D84432 TIGRFAMs:TIGR01579 EMBL:D83717 PIR:E69952
RefSeq:NP_390421.1 ProteinModelPortal:P54462 SMR:P54462
EnsemblBacteria:EBBACT00000000539 GeneID:937857 KEGG:bsu:BSU25430
PATRIC:18976924 GenoList:BSU25430 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 BioCyc:BSUB:BSU25430-MONOMER GO:GO:0035598
Uniprot:P54462
Length = 451
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 121/389 (31%), Positives = 200/389 (51%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TP-YLGM-EGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
Y E V I I E A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEI-IPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILK 425
Query: 359 VGRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 426 AGYPYNEGQFVRV---VEDEITEHMRLSS 451
>TIGR_CMR|CHY_0419 [details] [associations]
symbol:CHY_0419 "MiaB-like tRNA modifying enzyme"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_359280.1 ProteinModelPortal:Q3AF04 STRING:Q3AF04
GeneID:3727815 KEGG:chy:CHY_0419 PATRIC:21273999 OMA:SEFNERS
BioCyc:CHYD246194:GJCN-420-MONOMER Uniprot:Q3AF04
Length = 434
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 116/373 (31%), Positives = 195/373 (52%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-EVRLL--HR 63
K+ + + GC Q ++ ++ V++V G +R+VE+VE+ L+ ++ +
Sbjct: 67 KNPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLRERTKINAVASFE 126
Query: 64 KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ L ++P K+ K + I GC C YC +ARG L S +E +V V+ +
Sbjct: 127 ELLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAEVKKLCQ 186
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL--PPDGSTMLRIGMTNPPFILEHLK 180
G E+ L+ TGAYG++ +LP L + +VAEL P+ LR+ P +
Sbjct: 187 SGFSEIVLTGIHTGAYGQE-KQDLPKLAD-LVAELFKIPE-LKRLRLSSIEPQ---DFTV 240
Query: 181 EIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ +VL + P LH+P+QSG D +L AM R+YT ++ +++T+ E +P + + +D+
Sbjct: 241 ELLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIALTSDV 300
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGET+E F T NL+K+ F +H+ ++ PR GTPAA+M ++P ++RS L
Sbjct: 301 IVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPEREKERRSLLLL 360
Query: 299 SVFEA-FTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++ E F Y G++ + E +G GH+ Y++V G VKI
Sbjct: 361 NLKEELFKNYASKFLGKILEVIPEEQDTEGFW-EGHSDNYLRVKFSGNNIKRGEIYPVKI 419
Query: 357 TSVGRWSVFGEVI 369
T + V GE++
Sbjct: 420 TEMKEGYVSGELV 432
>TIGR_CMR|CHY_1398 [details] [associations]
symbol:CHY_1398 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_360230.1
ProteinModelPortal:Q3ACA4 STRING:Q3ACA4 GeneID:3726945
KEGG:chy:CHY_1398 PATRIC:21275927 ProtClustDB:PRK14328
BioCyc:CHYD246194:GJCN-1397-MONOMER TIGRFAMs:TIGR01579
Uniprot:Q3ACA4
Length = 440
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 110/368 (29%), Positives = 185/368 (50%)
Query: 5 IAKCKSAKKPLV--VAGCVPQGSRDLKEL-EGVS----IVGVQQIDRVVEVVEETLKGHE 57
+ K K LV V GC+PQ + K L E I G + + +++E + HE
Sbjct: 66 LKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEKHE 125
Query: 58 VRLLH--RKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
R+L + + ++ V+R V + I GC CTYC + RG S E ++
Sbjct: 126 -RVLEVWQSEGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVRGRERSRKKEDIL 184
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
+R ++A+G +EV L ++ +YG+D+ P+ ++A++ DG +R ++P
Sbjct: 185 QEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAE-LLADIEKIDGLWRVRFTTSHPR 242
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
+ + + E+ R C + LH+PVQ+GS+ +L AM+R YT + +V+ + +P +
Sbjct: 243 DLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAKIPKV 300
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
TDII GFPGET+EDF QT++L+++ ++ + R GTPAA MK +VP V +
Sbjct: 301 SFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVPEEVKSR 360
Query: 293 RSRELTSVFEAFTPYLGM--EGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
R +EL + + L EG + I + + D L G T+ V+ +++G
Sbjct: 361 RIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLVVFNGNEDLVG 420
Query: 350 TSALVKIT 357
VKIT
Sbjct: 421 KLVKVKIT 428
>UNIPROTKB|Q74A23 [details] [associations]
symbol:mtaB "tRNA (2-methylthio-N6-threonylcarbamyl-A37)
methylthiotransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:NP_953614.1
ProteinModelPortal:Q74A23 GeneID:2686393 KEGG:gsu:GSU2568
PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 113/354 (31%), Positives = 176/354 (49%)
Query: 15 LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL--LHRKK-LPAL 69
+VV GC Q + D + EL GVS +VG + + ++ + + ++ + + R++ + AL
Sbjct: 73 VVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVSDISRQRTVEAL 132
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
L + L + GC C+YC HARG S ++ + T G +EV
Sbjct: 133 GLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIGTFAYQGFREVV 191
Query: 130 LSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ GAYG D+ +L LL A AE L P LR+G P I + L IA +
Sbjct: 192 LTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEISDGL--IALMA 245
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I D+I GFPGE
Sbjct: 246 RSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICIGCDVIAGFPGE 305
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
TDE+F T+ L++ +H+ F R GTPAARM +V +V++R+ L ++ +
Sbjct: 306 TDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERAEVLRALSDRKR 365
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ + + G + G ++ Y+ V + + +V+IT V
Sbjct: 366 ETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMVRITGV 419
>TIGR_CMR|GSU_2568 [details] [associations]
symbol:GSU_2568 "MiaB-like tRNA modifying enzyme"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 GO:GO:0009451 TIGRFAMs:TIGR00089
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:VITFGCR
RefSeq:NP_953614.1 ProteinModelPortal:Q74A23 GeneID:2686393
KEGG:gsu:GSU2568 PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 113/354 (31%), Positives = 176/354 (49%)
Query: 15 LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL--LHRKK-LPAL 69
+VV GC Q + D + EL GVS +VG + + ++ + + ++ + + R++ + AL
Sbjct: 73 VVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVSDISRQRTVEAL 132
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
L + L + GC C+YC HARG S ++ + T G +EV
Sbjct: 133 GLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIGTFAYQGFREVV 191
Query: 130 LSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ GAYG D+ +L LL A AE L P LR+G P I + L IA +
Sbjct: 192 LTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEISDGL--IALMA 245
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I D+I GFPGE
Sbjct: 246 RSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICIGCDVIAGFPGE 305
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
TDE+F T+ L++ +H+ F R GTPAARM +V +V++R+ L ++ +
Sbjct: 306 TDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERAEVLRALSDRKR 365
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ + + G + G ++ Y+ V + + +V+IT V
Sbjct: 366 ETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMVRITGV 419
>UNIPROTKB|O31778 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035597 "N6-isopentenyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14327 PIR:D69884 RefSeq:NP_389583.1
ProteinModelPortal:O31778 SMR:O31778
EnsemblBacteria:EBBACT00000002125 GeneID:939451 KEGG:bsu:BSU17010
PATRIC:18975209 GenoList:BSU17010 BioCyc:BSUB:BSU17010-MONOMER
GO:GO:0035597 Uniprot:O31778
Length = 509
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 112/366 (30%), Positives = 180/366 (49%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPA 68
L V GC+ Q +R LK+ V ++ G I R+ E++ E E+ + + K+
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 199
Query: 69 LD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
++ LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>UNIPROTKB|Q81WR0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 107/368 (29%), Positives = 183/368 (49%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD 70
V GC+ Q ++ +++ + V +V G I R+ ++++ + E + + K+ ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEVLG--KGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLA--I 436
Query: 309 GMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
R + I E+ DG L G+T+ V + +++G +K+T W
Sbjct: 437 EKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKIKVTDAKTW 495
Query: 363 SVFGEVIK 370
S+ GE+++
Sbjct: 496 SLNGELVE 503
>TIGR_CMR|BA_3908 [details] [associations]
symbol:BA_3908 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 107/368 (29%), Positives = 183/368 (49%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD 70
V GC+ Q ++ +++ + V +V G I R+ ++++ + E + + K+ ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEVLG--KGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLA--I 436
Query: 309 GMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
R + I E+ DG L G+T+ V + +++G +K+T W
Sbjct: 437 EKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKIKVTDAKTW 495
Query: 363 SVFGEVIK 370
S+ GE+++
Sbjct: 496 SLNGELVE 503
>UNIPROTKB|Q83DX3 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 114/373 (30%), Positives = 184/373 (49%)
Query: 12 KKPLVV---AGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHEVRLLHRK 64
K+P VV GCV +G LK+ V IV G Q + R+ ++++ + K V +
Sbjct: 71 KRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKSVVDITFP 130
Query: 65 KLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ D LP+ R + I GC CT+C + RG S + ++ V ++
Sbjct: 131 EIEKFDRLPQPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQ 190
Query: 124 GVKEVWLSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GV+E+ L ++ Y G D V +L +L++ + A D +R ++P E+L
Sbjct: 191 GVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAM---DNIERIRFTTSHPSAFSENL 247
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
I P + + LH+PVQSGSD +L+AM R YT+ ++++ + L + P + +++D
Sbjct: 248 --IDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPDISLSSDF 305
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELT 298
I GFPGETD DF T+NLI + F + PRPGTPAA++ VP AV K+R L
Sbjct: 306 IIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKKERLAILQ 365
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ A + M G +RI +T + L G T+ V ++G +K
Sbjct: 366 NRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLIGQMVTIK 425
Query: 356 ITSVGRWSVFGEV 368
I +S++GE+
Sbjct: 426 IKEARPYSLWGEI 438
>UNIPROTKB|Q9KTE0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 125/399 (31%), Positives = 199/399 (49%)
Query: 12 KKPLVV---AGCVP--QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHR 63
KKP VV GCV +G RD V I G Q + R+ E+++++ V +
Sbjct: 72 KKPGVVIGVGGCVATQEGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQTSDAPVMDISF 130
Query: 64 KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
++ D LP+ R + I GC CTYC + RG S ++ ++ + +
Sbjct: 131 PEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAE 190
Query: 123 DGVKEVWLSSEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GV+EV L ++ AY G D G+ L +VA + DG +R ++P LE
Sbjct: 191 QGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATI--DGIDRIRFTTSHP---LEFT 245
Query: 180 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+I V P + SFLH+PVQSGSD +L+ M R +T ++++++ L + P +QI++D
Sbjct: 246 DDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSD 305
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSREL 297
I GFPGETD+DF T+ LI++ F F PRPGTPAA S VKK R EL
Sbjct: 306 FIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYEL 365
Query: 298 TSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
+A M G +RI + + D + L G T+ V + +++G V
Sbjct: 366 QQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDV 425
Query: 355 KITSVGRWSVFGEVIKILNQVDDKIASN-RRISSQVRQD 392
KI V S+ GE+++ +++ +IA++ + ++ R++
Sbjct: 426 KIVDVFPNSLRGELLRTEQEMNLRIATSPSEMKAKTRRE 464
>TIGR_CMR|CBU_0569 [details] [associations]
symbol:CBU_0569 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 114/373 (30%), Positives = 184/373 (49%)
Query: 12 KKPLVV---AGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHEVRLLHRK 64
K+P VV GCV +G LK+ V IV G Q + R+ ++++ + K V +
Sbjct: 71 KRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKSVVDITFP 130
Query: 65 KLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ D LP+ R + I GC CT+C + RG S + ++ V ++
Sbjct: 131 EIEKFDRLPQPRAEGPSAFVSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQ 190
Query: 124 GVKEVWLSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GV+E+ L ++ Y G D V +L +L++ + A D +R ++P E+L
Sbjct: 191 GVREITLLGQNVNDYRGLMHDGQVADLALLIHYLAAM---DNIERIRFTTSHPSAFSENL 247
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
I P + + LH+PVQSGSD +L+AM R YT+ ++++ + L + P + +++D
Sbjct: 248 --IDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPDISLSSDF 305
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELT 298
I GFPGETD DF T+NLI + F + PRPGTPAA++ VP AV K+R L
Sbjct: 306 IIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKKERLAILQ 365
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ A + M G +RI +T + L G T+ V ++G +K
Sbjct: 366 NRINAKAAEISQSMVGTQQRILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLIGQMVTIK 425
Query: 356 ITSVGRWSVFGEV 368
I +S++GE+
Sbjct: 426 IKEARPYSLWGEI 438
>TIGR_CMR|VC_0962 [details] [associations]
symbol:VC_0962 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 125/399 (31%), Positives = 199/399 (49%)
Query: 12 KKPLVV---AGCVP--QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHR 63
KKP VV GCV +G RD V I G Q + R+ E+++++ V +
Sbjct: 72 KKPGVVIGVGGCVATQEGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQTSDAPVMDISF 130
Query: 64 KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
++ D LP+ R + I GC CTYC + RG S ++ ++ + +
Sbjct: 131 PEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAE 190
Query: 123 DGVKEVWLSSEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GV+EV L ++ AY G D G+ L +VA + DG +R ++P LE
Sbjct: 191 QGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATI--DGIDRIRFTTSHP---LEFT 245
Query: 180 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+I V P + SFLH+PVQSGSD +L+ M R +T ++++++ L + P +QI++D
Sbjct: 246 DDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSD 305
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSREL 297
I GFPGETD+DF T+ LI++ F F PRPGTPAA S VKK R EL
Sbjct: 306 FIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYEL 365
Query: 298 TSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
+A M G +RI + + D + L G T+ V + +++G V
Sbjct: 366 QQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDV 425
Query: 355 KITSVGRWSVFGEVIKILNQVDDKIASN-RRISSQVRQD 392
KI V S+ GE+++ +++ +IA++ + ++ R++
Sbjct: 426 KIVDVFPNSLRGELLRTEQEMNLRIATSPSEMKAKTRRE 464
>UNIPROTKB|P0AEI1 [details] [associations]
symbol:miaB "isopentenyl-adenosine A37 tRNA methylthiolase
MiaB" species:83333 "Escherichia coli K-12" [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 EMBL:U82598 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:C64801 RefSeq:NP_415194.1 RefSeq:YP_488952.1
ProteinModelPortal:P0AEI1 SMR:P0AEI1 DIP:DIP-48018N IntAct:P0AEI1
MINT:MINT-1233637 PaxDb:P0AEI1 PRIDE:P0AEI1
EnsemblBacteria:EBESCT00000004746 EnsemblBacteria:EBESCT00000015136
GeneID:12932238 GeneID:945260 KEGG:ecj:Y75_p0651 KEGG:eco:b0661
PATRIC:32116511 EchoBASE:EB3421 EcoGene:EG13657
BioCyc:EcoCyc:G6364-MONOMER BioCyc:ECOL316407:JW0658-MONOMER
BioCyc:MetaCyc:G6364-MONOMER Genevestigator:P0AEI1 Uniprot:P0AEI1
Length = 474
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 118/391 (30%), Positives = 192/391 (49%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK--KLPALD- 70
V GCV +G + V I+ G Q + R+ E++ +++G ++ ++ D
Sbjct: 80 VGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN-SVRGDRSPVVDISFPEIEKFDR 138
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP+ R + I GC CTYC + RG S + ++ + + A GV+EV L
Sbjct: 139 LPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNL 198
Query: 131 SSEDTGAY-GRDI-GVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
++ A+ G + G L +VA + DG +R ++P +E +I EV R
Sbjct: 199 LGQNVNAWRGENYDGTTGSFADLLRLVAAI--DGIDRIRFTTSHP---IEFTDDIIEVYR 253
Query: 188 H-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P + SFLH+PVQSGSD +L+ M R +T +++ ++ L P +QI++D I GFPGE
Sbjct: 254 DTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF--EA 303
T EDF +T+ LI + F + F RPGTPAA M VP K+R L +A
Sbjct: 314 TTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQA 373
Query: 304 FTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
M G +RI + + I L G T+ V T +M+G V+IT V
Sbjct: 374 MAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPN 433
Query: 363 SVFGEVIKILNQVDDKIASN-RRISSQVRQD 392
S+ G+V++ +++ ++A + ++ R++
Sbjct: 434 SLRGKVVRTEDEMGLRVAETPESVIARTRKE 464
>UNIPROTKB|Q74B44 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 113/375 (30%), Positives = 182/375 (48%)
Query: 9 KSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH---EVRL 60
+S KK + V GCV Q G R L+++ + +V G + + E+V +G EV
Sbjct: 71 RSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRAEVGF 130
Query: 61 LHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+ + LDL P+ V + + GC C+YC + RG S ++ VR
Sbjct: 131 IDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDIIDEVR 188
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILE 177
+A+GVKEV L ++ +YG L L +AE+ +G +R ++P I
Sbjct: 189 KSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPKDISP 246
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+Q
Sbjct: 247 EL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGIQFTG 304
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRE 296
D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+ R
Sbjct: 305 DMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQSRLDR 364
Query: 297 LTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
L ++ + + G + + + ++ G L G G V + +++GT A V
Sbjct: 365 LQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGTMAEV 424
Query: 355 KITSVGRWSVFGEVI 369
IT + S+ GE++
Sbjct: 425 TITQDYQNSLLGEIV 439
>TIGR_CMR|GSU_2198 [details] [associations]
symbol:GSU_2198 "tRNA-i(6)A37 modification enzyme MiaB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 113/375 (30%), Positives = 182/375 (48%)
Query: 9 KSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH---EVRL 60
+S KK + V GCV Q G R L+++ + +V G + + E+V +G EV
Sbjct: 71 RSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRAEVGF 130
Query: 61 LHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+ + LDL P+ V + + GC C+YC + RG S ++ VR
Sbjct: 131 IDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDIIDEVR 188
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILE 177
+A+GVKEV L ++ +YG L L +AE+ +G +R ++P I
Sbjct: 189 KSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPKDISP 246
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+Q
Sbjct: 247 EL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGIQFTG 304
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRE 296
D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+ R
Sbjct: 305 DMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQSRLDR 364
Query: 297 LTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
L ++ + + G + + + ++ G L G G V + +++GT A V
Sbjct: 365 LQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGTMAEV 424
Query: 355 KITSVGRWSVFGEVI 369
IT + S+ GE++
Sbjct: 425 TITQDYQNSLLGEIV 439
>UNIPROTKB|Q747R0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 93/292 (31%), Positives = 149/292 (51%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGHEVRLLHRKKLPALD 70
L+V GC+PQ ++ +EL V I VG R+ E++EE + + ++R + D
Sbjct: 80 LIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPEQLRYIGDPNF-VFD 138
Query: 71 LPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
R N + L I GC C+YC RG S +ES++ R+++A G +E
Sbjct: 139 ESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSLVAGGARE 198
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++D YGRD+ P L ++ EL DG +R+ P I + L I +
Sbjct: 199 INLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYPDGITDGL--IQTIK 254
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P V +L +P+Q SD +L MNR T R +V L E +P + + T +I GFPGE
Sbjct: 255 NEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPDIALRTSLIVGFPGE 314
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
T+EDF ++ ++E +F ++ + + GTPAA M +V V ++R ++L
Sbjct: 315 TEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKRERYKKL 366
>TIGR_CMR|GSU_3205 [details] [associations]
symbol:GSU_3205 "MiaB-like tRNA modifying enzyme YliG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 93/292 (31%), Positives = 149/292 (51%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGHEVRLLHRKKLPALD 70
L+V GC+PQ ++ +EL V I VG R+ E++EE + + ++R + D
Sbjct: 80 LIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPEQLRYIGDPNF-VFD 138
Query: 71 LPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
R N + L I GC C+YC RG S +ES++ R+++A G +E
Sbjct: 139 ESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESVLAEARSLVAGGARE 198
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++D YGRD+ P L ++ EL DG +R+ P I + L I +
Sbjct: 199 INLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYPDGITDGL--IQTIK 254
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P V +L +P+Q SD +L MNR T R +V L E +P + + T +I GFPGE
Sbjct: 255 NEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPDIALRTSLIVGFPGE 314
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
T+EDF ++ ++E +F ++ + + GTPAA M +V V ++R ++L
Sbjct: 315 TEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKRERYKKL 366
>UNIPROTKB|Q607P8 [details] [associations]
symbol:MCA1711 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:YP_114150.1
ProteinModelPortal:Q607P8 GeneID:3102185 KEGG:mca:MCA1711
PATRIC:22607260 ProtClustDB:CLSK2523614 Uniprot:Q607P8
Length = 436
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 115/369 (31%), Positives = 173/369 (46%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID--RVVEVVEETLKGHEVRLLHRKKLP 67
S + LV++GC D GV +V V D R+VE+ L + +
Sbjct: 67 SPRARLVLSGCYATLHGDEAAALGVDLV-VSNADKSRLVEIAARELALEAMPEFSTEPGE 125
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
A R+ FV++ GC CT+C ARG S ++ +R + A+GV+E
Sbjct: 126 AALFALGRQRAFVKVQD---GCRYRCTFCIVTVARGEERSRLPAEVIREIRRLQAEGVQE 182
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
V L+ G YG D+G+ L L+ +I+ E LR+G P + ++ E
Sbjct: 183 VVLTGVHLGGYGSDLGLPLDALIRSILQETE---IPRLRLGSLEPWDLPPGFFDLFE--- 236
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+P LH+P+QSGSD VL M R +F + D VP + I TDII GFPGET
Sbjct: 237 NPRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQVPDINITTDIIVGFPGET 296
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-FEAFT 305
+ ++ +++ I+ F +H+ + R GT AA M VP+ + K+RSR L +
Sbjct: 297 EREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAEIKKERSRVLHELALGQKR 356
Query: 306 PYLG-MEGR-VERIWITEIAADGIHLVGHTKGYVQVLV--PSTG--NMLGTSALVKITSV 359
LG GR + +W E DG G+T Y++V + P TG N + LVK+ +
Sbjct: 357 ALLGRFVGREMPVLW--ENRRDGADR-GYTPNYLRVAIQTPETGLTNRITPVRLVKVDAS 413
Query: 360 GRWSVFGEV 368
G + G V
Sbjct: 414 GEFLWCGPV 422
>UNIPROTKB|Q608N1 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243233 "Methylococcus
capsulatus str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AE017282 GenomeReviews:AE017282_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_113916.1 ProteinModelPortal:Q608N1 GeneID:3102404
KEGG:mca:MCA1459 PATRIC:22606754 Uniprot:Q608N1
Length = 458
Score = 335 (123.0 bits), Expect = 9.5e-30, P = 9.5e-30
Identities = 113/376 (30%), Positives = 179/376 (47%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD--- 70
V GCV +G K V IV G Q + R+ ++E+ E R + PA++
Sbjct: 80 VGGCVASQEGEALQKRAPYVDIVFGPQTLHRLPSMLEQVRC--ERRPVVDVSFPAIEKFD 137
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP+ R + + + GC CT+C + RG S V+ ++ + + GV+EV
Sbjct: 138 ALPEPRADGPKAFVSVMEGCGKYCTFCVVPYTRGEEISRPVDDVIAEIVALAEQGVREVN 197
Query: 130 LSSEDTGAY-G--RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
L ++ AY G D G+ +L +L++ + A DG +R ++P +E + E
Sbjct: 198 LLGQNVNAYRGVLADGGMADLALLMHYVAAV---DGIDRIRFTTSHP---VEFSDALIEA 251
Query: 186 LRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
R P + S LH+PVQSGSD +L M R +T +++ V L E+ P + +++D I GFP
Sbjct: 252 FRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVAKLREIRPDLSLSSDFIVGFP 311
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA 303
GETDEDF T+ LI++ F Q F RPGTPAA M VP + R L +
Sbjct: 312 GETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAAMADDVPPETKRARLARLQAKIAD 371
Query: 304 FTPYLG--MEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+G M G ++ + + + + L G T+ V ++G V IT
Sbjct: 372 NAAKIGASMVGSIQSVLVEGTSRKNFNELSGRTENNRVVNFAGHPRLIGQFVDVVITESL 431
Query: 361 RWSVFGEVIKILNQVD 376
S+ G +I + ++ D
Sbjct: 432 PNSLRGRLIGVAHESD 447
>TIGR_CMR|SO_1181 [details] [associations]
symbol:SO_1181 "tRNA-i(6)A37 modification enzyme MiaB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_716806.1 ProteinModelPortal:Q8CX45
GeneID:1169010 KEGG:son:SO_1181 PATRIC:23522002 Uniprot:Q8CX45
Length = 474
Score = 339 (124.4 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 114/393 (29%), Positives = 195/393 (49%)
Query: 17 VAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD-L 71
V GCV Q + +K+ + V I+ G Q + R+ E++E+ +G + + + ++ D L
Sbjct: 80 VGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQVRRGEKAVIDVSFPEIEKFDRL 139
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P+ R + I GC C++C + RG S + ++ + + GV+EV L
Sbjct: 140 PEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPSDDIILEIAQLAEQGVREVNLL 199
Query: 132 SEDTGAY-G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
++ AY G D G+ L VA + DG +R ++P +E ++I +V
Sbjct: 200 GQNVNAYRGATHDGGICTFAELLRYVAAI--DGIDRIRFTTSHP---IEFTQDIIDVYED 254
Query: 189 -PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + SFLH+PVQSGSD +L+AM R + ++++++ L + P +QI++D I GFPGET
Sbjct: 255 TPELVSFLHLPVQSGSDRILTAMKRGHMAIEYKSIIRRLRKARPDIQISSDFIIGFPGET 314
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV-VKKRSRELTSVFEAFTP 306
EDF T+ LI++ F + RPGTPAA + P V ++++ + L + + T
Sbjct: 315 QEDFADTMKLIEDVAFDHSFSFIYSARPGTPAADL---PDDVDMEEKKQRLAILQDRITQ 371
Query: 307 YL-----GMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
M G V+RI + + + L G T+ V +GT V+I V
Sbjct: 372 QAMRYSRHMMGTVQRILVEGPSVKNPMELRGRTENNRVVNFEGLPKHIGTFVDVEIVDVY 431
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 393
S+ G+ I+ +++D + N R S + + K
Sbjct: 432 TNSLRGKFIRGEDEMD--LRRNLRPSDILAKHK 462
>TIGR_CMR|ECH_0837 [details] [associations]
symbol:ECH_0837 "tRNA-i(6)A37 modification enzyme MiaB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
PROSITE:PS50926 TIGRFAMs:TIGR00089 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
RefSeq:YP_507633.1 ProteinModelPortal:Q2GG00 STRING:Q2GG00
GeneID:3927997 KEGG:ech:ECH_0837 PATRIC:20577090
BioCyc:ECHA205920:GJNR-840-MONOMER Uniprot:Q2GG00
Length = 442
Score = 329 (120.9 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/290 (30%), Positives = 148/290 (51%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET--LKGHEVRLLHR--KKLP 67
+VVAGCV Q G + V IV G Q I + E++ + +K + + K
Sbjct: 75 IVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKARRMKKQVINIDFPIISKFD 134
Query: 68 ALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
A+ + + +N+ V + + GC CT+C + RG S TVE++ + GVK
Sbjct: 135 AIPVEEYTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEYSRTVEAIFNEALVLSDSGVK 194
Query: 127 EVWLSSEDTGAY-GRDIGVNLPI-LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ L ++ AY G G + L +A++P +R ++P + + L E
Sbjct: 195 EITLIGQNVNAYHGTYKGCEWDLGKLIQYLAKIP--NIERIRYTTSHPRDMHQSLYEAHR 252
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ F+H+P+QSGSD +L MNR++T ++ +++ L + P + ++D I GFP
Sbjct: 253 --SETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLRKQRPDIAFSSDFIVGFP 310
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
GET+EDF T+ L++E F Q + ++ PRPGTP+A ++P + +R
Sbjct: 311 GETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIPEEIKSQR 360
>TIGR_CMR|SPO_A0002 [details] [associations]
symbol:SPO_A0002 "tRNA-i(6)A37 thiotransferase enzyme
MiaB" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:CP000032 GenomeReviews:CP000032_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:YP_164834.1 ProteinModelPortal:Q5LLM0
GeneID:3196777 KEGG:sil:SPOA0002 PATRIC:23381304 Uniprot:Q5LLM0
Length = 439
Score = 329 (120.9 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 103/372 (27%), Positives = 170/372 (45%)
Query: 9 KSAKKPLV--VAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH---EVRL 60
K+AK L VAGCV Q G ++ V +VG Q R+ E+ +T G +
Sbjct: 71 KAAKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKTRAGEKALDTDF 130
Query: 61 LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
K L PK +R L + GC C +C + RG S + ++
Sbjct: 131 PEEDKFEKLKGRPKAKRGP-TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILREANE 189
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 178
++ GV+E+ L ++ AY G N + L ++ EL DG +R ++P + +
Sbjct: 190 LVERGVREITLLGQNVNAY-HGAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPNDMADD 248
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E + +LH+PVQ+GSD +L MNR +T + +++ + P + ++ D
Sbjct: 249 LIEAHGTCAK--LMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIRAARPDIVMSGD 306
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
I GFP ET+ DF T++L+++ ++ + ++ RPGTPAA +V A R + L
Sbjct: 307 FIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERAQVDPAEADDRLQRLQ 366
Query: 299 SVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+V + GM GR + + +VG ++ V V G G A V+I
Sbjct: 367 AVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDPGLEAGQIARVRI 426
Query: 357 TSVGRWSVFGEV 368
+ G S+ GE+
Sbjct: 427 VASGANSLAGEL 438
>TIGR_CMR|CJE_0508 [details] [associations]
symbol:CJE_0508 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_178526.1 ProteinModelPortal:Q5HW09 STRING:Q5HW09
GeneID:3231269 KEGG:cjr:CJE0508 PATRIC:20042728
ProtClustDB:PRK14339 BioCyc:CJEJ195099:GJC0-518-MONOMER
Uniprot:Q5HW09
Length = 433
Score = 321 (118.1 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 101/374 (27%), Positives = 177/374 (47%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC G+ K V V G + I ++ + ++ T K V + +
Sbjct: 69 KVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIK-TPKFMGVDIDYD 127
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+ A R + + + I++GC CTYC H RG S + + +
Sbjct: 128 ESEFAF--ADFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKAVEK 185
Query: 124 GVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFILEHLKE 181
G KE++L ++ YG+ + + + ++ EL + RI T+P P ++ K
Sbjct: 186 GAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTI-EDLERIRFTSPHPLHMDD-KF 243
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ +P V +H+P+QSGS +L AM R YT + L EL P + I+TDII
Sbjct: 244 LEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSISTDIIV 303
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-SRELTSV 300
FPGE+++DF +T++++++ +F Q+ ++ RP T AA M P+ + ++ SR L+++
Sbjct: 304 AFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATM---PNQIDEETASRRLSTL 360
Query: 301 FEAFTPYLG-----MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ L E + ++ E+ A G + G T V V + +LG VK
Sbjct: 361 QNRHSEILDEIVKKQENKTFKVLFEELRA-GNSIAGRTDNNFLVQVEGSEELLGQFKEVK 419
Query: 356 ITSVGRWSVFGEVI 369
IT+ R ++GE++
Sbjct: 420 ITNAKRMVLYGEIV 433
>TIGR_CMR|DET_0962 [details] [associations]
symbol:DET_0962 "tRNA modification enzyme, MiaB family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 Pfam:PF00919 Pfam:PF04055
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_181685.1 ProteinModelPortal:Q3Z7W4 STRING:Q3Z7W4
GeneID:3229703 KEGG:det:DET0962 PATRIC:21608973 OMA:ERINTKA
ProtClustDB:CLSK837155 BioCyc:DETH243164:GJNF-963-MONOMER
Uniprot:Q3Z7W4
Length = 413
Score = 319 (117.4 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 83/283 (29%), Positives = 144/283 (50%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+ I GC C+YC R H V+ ++ + A+G +E+ L+ + G Y
Sbjct: 131 IKIQDGCDNFCSYCIVPFVRRHKSCRRVDEIISEINLRQAEGYQEIVLTGTEIGEYASG- 189
Query: 143 GVNLPILLNAIVA--ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 200
GV+L L+ AI+A ++P LR+ P I L + E +P + H+ +Q
Sbjct: 190 GVDLAGLIEAILANTQIP-----RLRLSSLQPGEITPRLLALWE---NPRLCRHFHMALQ 241
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
SGSD +L+ M R Y+L D+ ++ + VPG + TD+I GFPGET+EDF ++ I++
Sbjct: 242 SGSDCILALMRRPYSLGDYNRALEAIRSQVPGAAVTTDLIVGFPGETEEDFALSLKYIQQ 301
Query: 261 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGR---VER 316
F +VH + R GT A+ M+ K+ +V+KKR + + ++ + + + E
Sbjct: 302 AGFARVHAFPYSERLGTLASGMEGKIDPSVIKKRLSLVMAAAKSVSMQYRRQSKGLGKEV 361
Query: 317 IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+W ++ DG+ G+T Y++V +G T + VK+ +
Sbjct: 362 LWENKMR-DGLWF-GYTSDYIRVYGRFSGQPTNTISQVKLVKI 402
>TIGR_CMR|NSE_0832 [details] [associations]
symbol:NSE_0832 "tRNA-i(6)A37 modification enzyme MiaB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_506702.1
ProteinModelPortal:Q2GCU4 STRING:Q2GCU4 GeneID:3932248
KEGG:nse:NSE_0832 PATRIC:22681657 ProtClustDB:CLSK2528018
BioCyc:NSEN222891:GHFU-838-MONOMER Uniprot:Q2GCU4
Length = 471
Score = 327 (120.2 bits), Expect = 7.5e-28, P = 7.5e-28
Identities = 101/375 (26%), Positives = 178/375 (47%)
Query: 4 LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEV 58
L+ K K + +VVAGCV Q G ++ E V +V G Q I + E++ + + G +
Sbjct: 93 LLQKKKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVNRQSGKAI 152
Query: 59 RL----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
++ + + A + K R + L I GC C +C + RG S + E +
Sbjct: 153 KMEFDPIEKFDYLAEETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRGAEYSRSTEEVY 212
Query: 115 GRVRTVIADGVKEVWLSSEDTGAY-GR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
++ GVKE+ L ++ Y G D G N + L +++ L S + RI T
Sbjct: 213 REALSLTTKGVKEITLLGQNVNGYHGTLDSG-NKVLNLGQLISRLGKIPS-LKRIRYTTS 270
Query: 173 PFILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
+ H KE+ + + + F+H+PVQSGSD +L MNR+YT +D+ +++
Sbjct: 271 HPVDMH-KELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKIINEFQNARS 329
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
+ ++D I GFPGE+D+DF QT+ LI++ + Q + ++ PRPGTP A ++
Sbjct: 330 DIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGATYPQISEETKN 389
Query: 292 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
R ++L + + M G+ + + D I G T+ Y+Q + N+L
Sbjct: 390 TRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDKKHPDKIS--GRTE-YMQQVFSDDSNLLD 446
Query: 350 TSALVKITSVGRWSV 364
+++ +++
Sbjct: 447 KIVTMRVEDASTFTL 461
>TIGR_CMR|DET_1385 [details] [associations]
symbol:DET_1385 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 KO:K06168 OMA:RDSEHII RefSeq:YP_182095.1
ProteinModelPortal:Q3Z6Q4 STRING:Q3Z6Q4 GeneID:3229346
KEGG:det:DET1385 PATRIC:21609799 ProtClustDB:PRK14336
BioCyc:DETH243164:GJNF-1386-MONOMER Uniprot:Q3Z6Q4
Length = 418
Score = 311 (114.5 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 90/295 (30%), Positives = 140/295 (47%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+ I GC CTYC + RG S ++ L ++ G +EV L ++ +YG D+
Sbjct: 128 ITIMQGCDNFCTYCIVPYRRGREKSRSISELCCEAAELVRRGSREVVLLGQNVDSYGHDL 187
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 202
P L + + A G +R ++P I + L + L C +S L +PVQ+G
Sbjct: 188 PEK-PCLADLLYALSDIPGLLRIRFLTSHPKDISQKLIDAMASLHKVC-HS-LSLPVQAG 244
Query: 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262
+D +L+AM R YT +R +V L +P + + TD+I GFP ET E F+Q+ L+ +
Sbjct: 245 ADTILAAMRRGYTSEQYRELVGRLKTAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIG 304
Query: 263 FPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320
+ +H++ + PRP T AAR VP A KKR +L + T V+
Sbjct: 305 YDAIHVAAYSPRPQTAAARDMADDVPVAE-KKRRLKLIEDLQKETVSKANSALVDTF--A 361
Query: 321 EIAADGIHL---VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 372
E+ +G G T G V + S + G VKI WS+ +++KIL
Sbjct: 362 EVLVEGRQKNKWQGRTLGGKLVFLESDLPLEGCLINVKIFKASPWSLQAKLVKIL 416
>TIGR_CMR|CHY_1164 [details] [associations]
symbol:CHY_1164 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125
RefSeq:YP_360009.1 ProteinModelPortal:Q3ACX5 STRING:Q3ACX5
GeneID:3726572 KEGG:chy:CHY_1164 PATRIC:21275468 KO:K14441
BioCyc:CHYD246194:GJCN-1163-MONOMER Uniprot:Q3ACX5
Length = 438
Score = 313 (115.2 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 87/298 (29%), Positives = 153/298 (51%)
Query: 12 KKP---LVVAGCVPQ--GSRDLKELEGVSIVGV-QQIDRVVEVVEETLKGHEVRLLHRKK 65
KKP ++VAGC+ Q G K L V + ++I+ + +++ + + +++ L
Sbjct: 67 KKPGQKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGENNKLVLSEPGF 126
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P+ + N+ + I GC CTYC RG S ++ ++ ++ + G+
Sbjct: 127 LNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSRPLDDILEEIKDTLKQGI 186
Query: 126 KEVWLSSEDTGAYGRDI-G-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
KE+ L ++DT AYG D+ G L LL I + G+ +R+ P I L I
Sbjct: 187 KEIILVAQDTTAYGIDLYGEFKLVELLRKIGSI---KGNFWVRLMYLYPDKITPEL--IN 241
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
E+ +P V ++ VP+Q +L M R+ + + + ++ L + +P + I T I GF
Sbjct: 242 EIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKEIPDITIRTTFIVGF 301
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
PGET+E FN ++ +K++KF ++ +Y GTPAA+MK ++P V ++R +L V
Sbjct: 302 PGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKKVKEQRYEKLMEV 359
>TIGR_CMR|APH_0880 [details] [associations]
symbol:APH_0880 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 RefSeq:YP_505456.1
ProteinModelPortal:Q2GJJ5 STRING:Q2GJJ5 GeneID:3929963
KEGG:aph:APH_0880 PATRIC:20950460 KO:K06168 OMA:RDSEHII
ProtClustDB:CLSK747303 BioCyc:APHA212042:GHPM-893-MONOMER
Uniprot:Q2GJJ5
Length = 444
Score = 303 (111.7 bits), Expect = 5.1e-25, P = 5.1e-25
Identities = 90/309 (29%), Positives = 144/309 (46%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
L+VAGCV Q G + V++V G+ + ++ V+ K + K A
Sbjct: 75 LIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRDKKQINIEFPVVSKFDA 134
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ + + + I GC CT+C + RG S VE+++ V+ + G KE+
Sbjct: 135 ISIDRKANGGVSAYVSIQEGCDKFCTFCVVPYTRGPEYSRDVEAILEEVKQLTDRGTKEI 194
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L ++ AY N L I DG +R ++P + L E +
Sbjct: 195 VLIGQNVNAYHGTYKGNEWDLGKLIQKVSLIDGVERIRYTTSHPRDMHPSLYEAHRDEKK 254
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
+ F+H+PVQSGSDA+L MNR++T ++ VV+ L + M +++D I GFPGET+
Sbjct: 255 --LAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKDSNKNMALSSDFIVGFPGETE 312
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF--EAFT 305
+DF +T+ L++ F + ++ PRPGTP A +VP R L + +
Sbjct: 313 KDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQVPEEEKSARLAALQGLLTKQQLQ 372
Query: 306 PYLGMEGRV 314
MEGRV
Sbjct: 373 FNKSMEGRV 381
>TIGR_CMR|CPS_3572 [details] [associations]
symbol:CPS_3572 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_270240.1 ProteinModelPortal:Q47Y80 STRING:Q47Y80
GeneID:3520404 KEGG:cps:CPS_3572 PATRIC:21470075
ProtClustDB:PRK14325 BioCyc:CPSY167879:GI48-3594-MONOMER
Uniprot:Q47Y80
Length = 480
Score = 297 (109.6 bits), Expect = 5.6e-24, P = 5.6e-24
Identities = 108/387 (27%), Positives = 182/387 (47%)
Query: 12 KKP--LV-VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----EVRLL 61
KKP L+ V GCV +G K V ++ G Q + R+ E++ + +V
Sbjct: 72 KKPDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLNQLQHSKSPIIDVSFP 131
Query: 62 HRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+K L PK + FV I+ GC CT+C + RG S ++ ++ + +
Sbjct: 132 EIEKFDRLPEPKADGASAFVSIME---GCSKYCTFCVVPYTRGEEVSRPLDDVLYEIAQL 188
Query: 121 IADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GV+EV L ++ AY G ++ + + DG +R ++P +E
Sbjct: 189 AEQGVREVNLLGQNVNAYRGETHDGSICRFADLVRLVATIDGIDRIRYTTSHP---VEFT 245
Query: 180 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+I E P + + LH+PVQSG D +L+ M R +T ++++ + L ++ P + +++D
Sbjct: 246 DDIIEAYTDVPELVNHLHLPVQSGCDRILTQMKRGHTALEYKSQIRKLKKVRPELSMSSD 305
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP-RPGTPAARMKKVPSAVVKKRSREL 297
I GFPGETDEDF T++LIK F + S Y RPGTPAA + S KK +L
Sbjct: 306 FIIGFPGETDEDFTATMDLIKAVDF-DLSFSFIYSARPGTPAADLPDDISDQTKKDRLKL 364
Query: 298 TS---VFEAFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSAL 353
+A M +R+ + + + L G T+ V + +++G
Sbjct: 365 LQEQITHQALRIARQMLNTEQRVLVEGPSRKNPMELRGKTENNRTVNFVAPHSVIGQFVD 424
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIA 380
+KIT V S+ GE+++ ++ +IA
Sbjct: 425 IKITDVVANSLRGELVREEKEMGLRIA 451
>FB|FBgn0037816 [details] [associations]
symbol:CG6345 species:7227 "Drosophila melanogaster"
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE014297 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 OMA:CGRTDGN EMBL:AY071094 RefSeq:NP_650002.1
UniGene:Dm.31302 ProteinModelPortal:Q9VGZ1 SMR:Q9VGZ1 STRING:Q9VGZ1
PRIDE:Q9VGZ1 EnsemblMetazoa:FBtr0082258 GeneID:41271
KEGG:dme:Dmel_CG6345 UCSC:CG6345-RA FlyBase:FBgn0037816
InParanoid:Q9VGZ1 OrthoDB:EOG4KPRS9 PhylomeDB:Q9VGZ1
GenomeRNAi:41271 NextBio:823020 Bgee:Q9VGZ1 GermOnline:CG6345
Uniprot:Q9VGZ1
Length = 583
Score = 240 (89.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 69/207 (33%), Positives = 108/207 (52%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQS 201
G LL + VA+ PD +RI T+P + E+ EV+R HP V LH+P QS
Sbjct: 330 GTPFAALLRS-VAQAVPD----MRIRFTSP-HPKDFSDEVLEVIRDHPNVCKQLHLPAQS 383
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
G+ VL M R Y+ + +V + + +P + +++D ICGF GET+E+F TV+LI++
Sbjct: 384 GNTQVLERMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQV 443
Query: 262 KFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTSVF-EAFTP-YLGMEGRVERI 317
++ ++ + R T A R K VP V +R + + VF E T + MEG+ + I
Sbjct: 444 QYNVAYLFAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLI 503
Query: 318 WIT-EIAADGIHLVGHTKGYVQVLVPS 343
I + H G ++V+VPS
Sbjct: 504 LIEGKSKRSDAHWFGRNDANIKVIVPS 530
Score = 95 (38.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY 138
FV I+ GC CTYC RG S + S+V V+ + GVKEV L ++ +Y
Sbjct: 244 FVSIMR---GCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY 300
Query: 139 GRD 141
RD
Sbjct: 301 -RD 302
>TIGR_CMR|NSE_0785 [details] [associations]
symbol:NSE_0785 "tRNA modification enzyme, MiaB family"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_506660.1 ProteinModelPortal:Q2GCY6 STRING:Q2GCY6
GeneID:3931918 KEGG:nse:NSE_0785 PATRIC:22681565 OMA:VITFGCR
ProtClustDB:CLSK2528053 BioCyc:NSEN222891:GHFU-796-MONOMER
Uniprot:Q2GCY6
Length = 429
Score = 278 (102.9 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 87/301 (28%), Positives = 138/301 (45%)
Query: 5 IAKCKSAK--KPLVVAGCVPQ-GSRDLKELEGV-SIVG-VQQIDRVVEVVEETLKGHEVR 59
I KC + K ++V GC PQ + GV ++G V+++ E+ + ++
Sbjct: 64 IRKCHKDEPSKKIIVVGCGPQLDPHAYSRMPGVFKVLGNVEKLKAENYASEQKIAVADIT 123
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ +P V + L I GC CT+C ARG S ++V VR
Sbjct: 124 DASETAFSSTMMPVVSAVRKRAFLEIQNGCDHDCTFCAITLARGKNRSSDAMTIVSEVRK 183
Query: 120 VIADGVKEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
++A G+ EV L+ D YG+D+ G L LL I+ ++P LR+ + + +
Sbjct: 184 IVAFGINEVVLTGVDITDYGKDLFGKPALVYLLKKILNDVPE--LKRLRLSSVDVSELSD 241
Query: 178 HLKEI-AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E+ A R + LH+ +QSG +L M R +T ++ + P
Sbjct: 242 DFIELFATEAR---LMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVRPETGFG 298
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
DII GFP E++E F+ + LIK P +H+ F P+ GT AA M +V V K R+R+
Sbjct: 299 ADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAALMPQVDGVVKKGRARK 358
Query: 297 L 297
L
Sbjct: 359 L 359
>UNIPROTKB|Q2GHP3 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 276 (102.2 bits), Expect = 5.8e-22, P = 5.8e-22
Identities = 85/299 (28%), Positives = 141/299 (47%)
Query: 10 SAKKPLVVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKK 65
+A ++VAGC Q + +L + GV ++G Q D++ E L ++ + + K
Sbjct: 58 NANVKIIVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSK 113
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
D K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G
Sbjct: 114 EVVQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGY 173
Query: 126 KEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
EV + D +G DI G L ++ +++ +P LR+ + I + L I
Sbjct: 174 NEVVFTGVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI- 230
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++ P LH+ +QSG++ +L M R ++ + + + DII GF
Sbjct: 231 -IINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGF 289
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
P ET+E FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 290 PTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>TIGR_CMR|ECH_0217 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 276 (102.2 bits), Expect = 5.8e-22, P = 5.8e-22
Identities = 85/299 (28%), Positives = 141/299 (47%)
Query: 10 SAKKPLVVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKK 65
+A ++VAGC Q + +L + GV ++G Q D++ E L ++ + + K
Sbjct: 58 NANVKIIVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSK 113
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
D K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G
Sbjct: 114 EVVQDSVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGY 173
Query: 126 KEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
EV + D +G DI G L ++ +++ +P LR+ + I + L I
Sbjct: 174 NEVVFTGVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI- 230
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++ P LH+ +QSG++ +L M R ++ + + + DII GF
Sbjct: 231 -IINEPRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGF 289
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
P ET+E FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 290 PTETEEMFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>ZFIN|ZDB-GENE-070424-90 [details] [associations]
symbol:zgc:162738 "zgc:162738" species:7955 "Danio
rerio" [GO:0043412 "macromolecule modification" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729
ZFIN:ZDB-GENE-070424-90 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:CR385028 EMBL:CT573268 IPI:IPI00877502
ProteinModelPortal:F1QMW8 Ensembl:ENSDART00000104111 Bgee:F1QMW8
Uniprot:F1QMW8
Length = 577
Score = 217 (81.4 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 56/178 (31%), Positives = 93/178 (52%)
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P +L+ ++E + + +H LH+P QSGS +L AM R YT + +V+ + +++P
Sbjct: 358 PDEVLQLIQERSNICKH------LHLPAQSGSSRILHAMRRGYTREAYLELVENIRKIIP 411
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAV 289
G+ +++D I GF ET+ED QT++L+KE + + R T A R++ VP+ V
Sbjct: 412 GVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIGFFFTYSMRKKTHAYHRLEDNVPAPV 471
Query: 290 VKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLVPST 344
K+R EL SVF + M G + + + + L G G V+V+ P T
Sbjct: 472 KKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIFPKT 529
Score = 100 (40.3 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 40/127 (31%), Positives = 61/127 (48%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
V+AG P RDL L ++ G Q+ V+ +EET +V +H+ L+
Sbjct: 191 VLAG--PDAYRDLPRLLSLAHGG-QRASNVLLSLEETYA--DVIPVHQ----TLE----G 237
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S + S+V VR + GVKE+ L ++
Sbjct: 238 HSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPMSSIVEEVRMLSDQGVKEITLLGQNV 294
Query: 136 GAYGRDI 142
+Y RD+
Sbjct: 295 NSY-RDL 300
Score = 65 (27.9 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 32/111 (28%), Positives = 44/111 (39%)
Query: 285 VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLV 341
VP+ V K+R EL SVF + M G + + + + L G G V+V+
Sbjct: 467 VPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIF 526
Query: 342 PSTG--------NML----GTSALVKITSVGRWSVFGEVIKILNQVDDKIA 380
P T M G LVKITS S+ G + + D K A
Sbjct: 527 PKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGHALNHSSLNDRKTA 577
>UNIPROTKB|F1NZV3 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY EMBL:AADN02019062 IPI:IPI00570955
ProteinModelPortal:F1NZV3 Ensembl:ENSGALT00000010897 Uniprot:F1NZV3
Length = 522
Score = 217 (81.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 74/223 (33%), Positives = 116/223 (52%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 199
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + LH+P
Sbjct: 272 GLRFAHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIQE--RHN-ICKQLHLPA 323
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGS VL AM R YT + +V + +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 324 QSGSTRVLEAMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLR 383
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 315
E ++ + + R T A R++ VP+ V ++R EL +VF EA M G+ +
Sbjct: 384 EVRYNIGFLFAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQ 443
Query: 316 RIWITEIAA-DGIHLVGHTKGYVQVLVPS--TGNMLGTSALVK 355
+ + + L G G ++V+ P T + G ALV+
Sbjct: 444 LVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVR 486
Score = 90 (36.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 37/127 (29%), Positives = 58/127 (45%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
+VAG P RDL L ++ G QQ V+ ++ET + LP +
Sbjct: 136 IVAG--PDAYRDLPRLLAMAESG-QQAANVLLSLDET---------YADILP-VQTSAGG 182
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S + S++ V+ + GVKEV L ++
Sbjct: 183 KTAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILQEVKMLSDQGVKEVTLLGQNV 239
Query: 136 GAYGRDI 142
++ RD+
Sbjct: 240 NSF-RDM 245
>UNIPROTKB|Q60CM4 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AE017282
GenomeReviews:AE017282_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 RefSeq:YP_112621.1
ProteinModelPortal:Q60CM4 GeneID:3104493 KEGG:mca:MCA0082
PATRIC:22603887 OMA:RVDTEHM Uniprot:Q60CM4
Length = 437
Score = 252 (93.8 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 85/328 (25%), Positives = 145/328 (44%)
Query: 15 LVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL- 71
++V GC+ + +++ + + G + V+ V E L LH P +DL
Sbjct: 73 VIVTGCLGERPEEIQARHPAVLKVTGAHAYEEVMNAVHEHLPP-----LHD---PFMDLV 124
Query: 72 -PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
P+ VR + L I+ GC C++C RG L S + ++ ++A GVKE+
Sbjct: 125 PPQGVRLTPRHYAYLKISEGCNHRCSFCIIPALRGDLVSRPIGEVMTEAERLVAAGVKEI 184
Query: 129 WLSSEDTGAYGRDIGVNLPIL----LNAIVAELPP---DGSTMLRIGMTNPPFILEHLKE 181
+ S+DT AYG D+G L EL D +R+ P H+ E
Sbjct: 185 LVVSQDTSAYGADLGYRTGFWGGRPLRTRFQELARALGDLGVWIRLHYVYP---YPHVDE 241
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ ++ + +L +P Q S VL AM R + + E+ P + + + I
Sbjct: 242 VIPLMAEGRLLPYLDIPFQHASARVLKAMKRPAATENILAAIRRWREVCPELTLRSTFIV 301
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVPSAVVKKRSRELTSV 300
GFPGET+++F + ++ ++E + +V ++ P G A A VP+ V +R L V
Sbjct: 302 GFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANALPDPVPAEVKAERHARLMEV 361
Query: 301 FEAFTPY-LGME-GRVERIWITEIAADG 326
E + L GR E + + E+ +G
Sbjct: 362 QERISAARLRTRIGRTETVLVDEVVEEG 389
>TAIR|locus:2115410 [details] [associations]
symbol:AT4G36390 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0009691 "cytokinin
biosynthetic process" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0000079
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AL161589 EMBL:Z99708
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:BT002022 EMBL:BT008395 IPI:IPI00522311 PIR:E85429
RefSeq:NP_195357.2 UniGene:At.27708 ProteinModelPortal:Q8H0V1
SMR:Q8H0V1 STRING:Q8H0V1 PaxDb:Q8H0V1 PRIDE:Q8H0V1
EnsemblPlants:AT4G36390.1 GeneID:829791 KEGG:ath:AT4G36390
TAIR:At4g36390 HOGENOM:HOG000224767 InParanoid:Q8H0V1 OMA:CGRTDGN
PhylomeDB:Q8H0V1 ProtClustDB:CLSN2680299 Genevestigator:Q8H0V1
GermOnline:AT4G36390 TIGRFAMs:TIGR01574 Uniprot:Q8H0V1
Length = 640
Score = 177 (67.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 55/206 (26%), Positives = 99/206 (48%)
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR--HPCVYSFLHV 197
+++G+ LL+ + E P +R T+P ++ E+ ++R H + + +H+
Sbjct: 371 KNMGLRFADLLDRLSVEFPE-----MRFRFTSP-HPKDYPDELLYLMRDRHN-ICNLIHL 423
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
P QSG+ +L M R YT + +V + ++P + I +D I GF GET+E+ +T++L
Sbjct: 424 PAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSL 483
Query: 258 IKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEAFT-P-YLGMEGR 313
++ + ++ + R T A R VP V ++R EL F T P Y G
Sbjct: 484 VRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGS 543
Query: 314 VERIWIT--EIAADGIHLVGHT-KGY 336
+ + + A L+G T KG+
Sbjct: 544 TQLVLVEGPNKRAPETELIGKTDKGH 569
Score = 128 (50.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 7 KCKSAKKP-LVVAGCVPQGSRDLKELEGVSIVGV-------QQIDRVVEVVEETLKGHEV 58
+ KS K P +VV GC+ + +D K L+ +V V + + R++E V+ KG
Sbjct: 207 RAKSLKPPKVVVLGCMAERLKD-KILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 265
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L + + ++ N + + GC C +C RG S VES++ V
Sbjct: 266 LLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVG 325
Query: 119 TVIADGVKEVWLSSEDTGAYGRD 141
+ GVKEV L ++ +Y D
Sbjct: 326 ELWESGVKEVTLLGQNVNSYNDD 348
>UNIPROTKB|F1S500 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 EMBL:CU074412
RefSeq:XP_001928891.1 UniGene:Ssc.4299 ProteinModelPortal:F1S500
Ensembl:ENSSSCT00000007949 GeneID:100153041 KEGG:ssc:100153041
Uniprot:F1S500
Length = 589
Score = 196 (74.1 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 65/210 (30%), Positives = 107/210 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 197
G+ LL+ V+++ P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 339 GLRFAHLLDQ-VSQIDPE----MRIRFTSP-----HPKDFPDEVLQLIHDRDNICKQIHL 388
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 389 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 448
Query: 258 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 313
++E ++ + + R T A R+K +P V +R EL +VF EA G
Sbjct: 449 LQEVQYNMGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGC 508
Query: 314 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 342
++ + + + L G G ++V+ P
Sbjct: 509 IQLVLVEGFSKRSSTDLCGRNDGNLKVIFP 538
Score = 99 (39.9 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 39/126 (30%), Positives = 57/126 (45%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V+ G QQ V+ ++ET + LP P
Sbjct: 203 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVLPVQTSPSAT 250
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 251 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 306
Query: 136 GAYGRD 141
++ RD
Sbjct: 307 NSF-RD 311
>UNIPROTKB|E2QYD7 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AAEX03013894 ProteinModelPortal:E2QYD7
Ensembl:ENSCAFT00000039522 Uniprot:E2QYD7
Length = 583
Score = 198 (74.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 65/210 (30%), Positives = 105/210 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 197
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 333 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 382
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
P QSGS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 383 PAQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 442
Query: 258 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 313
++E ++ + + R T A R+K VP V +R EL +VF EA + G
Sbjct: 443 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGS 502
Query: 314 VERIWIT-EIAADGIHLVGHTKGYVQVLVP 342
+ + + L G G ++V+ P
Sbjct: 503 TQLVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 95 (38.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 36/123 (29%), Positives = 55/123 (44%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V+ G QQ V+ ++ET + +P P
Sbjct: 197 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 244
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 245 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 300
Query: 136 GAY 138
++
Sbjct: 301 NSF 303
>DICTYBASE|DDB_G0287079 [details] [associations]
symbol:DDB_G0287079 "CDK5 regulatory
subunit-associated protein 1" species:44689 "Dictyostelium
discoideum" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 dictyBase:DDB_G0287079 GenomeReviews:CM000153_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AAFI02000096
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 RefSeq:XP_637416.1 ProteinModelPortal:Q54KV4
STRING:Q54KV4 EnsemblProtists:DDB0266584 GeneID:8625948
KEGG:ddi:DDB_G0287079 OMA:TSNLQEX ProtClustDB:CLSZ2430042
Uniprot:Q54KV4
Length = 607
Score = 207 (77.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 53/174 (30%), Positives = 94/174 (54%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 201
G+ L+ +V+++ P+ +RI T+P + ++ E++++ P + LH+P QS
Sbjct: 357 GITFTKLME-LVSKVDPE----IRIRFTSP-HPKDFPDDLLELIKNQPNICKQLHIPAQS 410
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GS VL +M R YT + ++DT+ ++PG I++D I GF GE+D+D N+T++L++
Sbjct: 411 GSSKVLESMRRGYTRESYIELIDTIKRVLPGCAISSDFISGFCGESDQDHNETISLMEYV 470
Query: 262 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE 315
+ + + R T A R K K SR LT V + F L + ++E
Sbjct: 471 GYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSR-LTQVVDTFYKRLKEKNQLE 523
Score = 84 (34.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 36/141 (25%), Positives = 62/141 (43%)
Query: 9 KSAKKPLVVA--GCVPQGSRDLKELEG---VSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
K + L+V GC+ + ++ K LE V IV R + + TL+ E +
Sbjct: 175 KQGRPNLIVGVLGCMAERLKE-KLLESDMKVDIVVGPDAYRSLPSLLATLEDGEQQTAIN 233
Query: 64 KKLPA----LDLPKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
L A D+ VR+ N+ + I GC C+YC RG S ++S++ V
Sbjct: 234 VILSADETYADIKPVRKSDNQVSAYVSIMRGCNNMCSYCIVPFTRGRERSRPIDSILREV 293
Query: 118 RTVIADGVKEVWLSSEDTGAY 138
+ + G KE+ L ++ ++
Sbjct: 294 KDLSDQGFKEITLLGQNVNSF 314
>MGI|MGI:1914221 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein
1" species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0043412 "macromolecule
modification" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 MGI:MGI:1914221
GO:GO:0005737 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 EMBL:AK010097 EMBL:AK088517 EMBL:BC025132
IPI:IPI00109397 RefSeq:NP_080152.1 UniGene:Mm.289427
ProteinModelPortal:Q8BTW8 SMR:Q8BTW8 STRING:Q8BTW8
PhosphoSite:Q8BTW8 PaxDb:Q8BTW8 PRIDE:Q8BTW8
Ensembl:ENSMUST00000028990 Ensembl:ENSMUST00000109731 GeneID:66971
KEGG:mmu:66971 InParanoid:Q8BTW8 OrthoDB:EOG4SQWWK NextBio:323171
Bgee:Q8BTW8 CleanEx:MM_CDK5RAP1 Genevestigator:Q8BTW8
GermOnline:ENSMUSG00000027487 Uniprot:Q8BTW8
Length = 588
Score = 195 (73.7 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 199
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 336 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 387
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 388 QSGSSRVLDAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLR 447
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 301
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 448 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 491
Score = 92 (37.4 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 38/126 (30%), Positives = 56/126 (44%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V G QQ V+ ++ET + +P P
Sbjct: 200 LLAG--PDAYRDLPRLLAVVESG-QQAANVLLSLDET---------YADIMPVQTSPSAT 247
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 248 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQNV 303
Query: 136 GAYGRD 141
++ RD
Sbjct: 304 NSF-RD 308
>UNIPROTKB|Q08DN3 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1" species:9913 "Bos taurus" [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
eggNOG:COG0621 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 HOVERGEN:HBG050975
OrthoDB:EOG4SQWWK EMBL:DAAA02036431 EMBL:BC123652 IPI:IPI00694092
RefSeq:NP_001069114.1 UniGene:Bt.3262 STRING:Q08DN3
Ensembl:ENSBTAT00000024670 GeneID:514086 KEGG:bta:514086
InParanoid:Q08DN3 NextBio:20871170 Uniprot:Q08DN3
Length = 589
Score = 188 (71.2 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 52/162 (32%), Positives = 89/162 (54%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 201
G+ LL+ V+ + P+ +RI T+P + E+ +++R + +H+P QS
Sbjct: 339 GLRFAHLLDQ-VSRIDPE----MRIRFTSP-HPKDFPDEVLQLIRERDNICKQIHLPAQS 392
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++E
Sbjct: 393 GSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREV 452
Query: 262 KFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 301
++ + + R T A R+K +P V +R EL +VF
Sbjct: 453 QYNIGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVF 494
Score = 99 (39.9 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 38/126 (30%), Positives = 58/126 (46%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL +L V+ G QQ V+ ++ET + +P P
Sbjct: 203 ILAG--PDAYRDLPQLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 250
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 251 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 306
Query: 136 GAYGRD 141
++ RD
Sbjct: 307 NSF-RD 311
Score = 39 (18.8 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 281 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 336
R+K +P V +R EL +VF EA G + + + + L G G
Sbjct: 473 RLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPSKRSAADLCGRNDGN 532
Query: 337 VQVLVP------STGNML------GTSALVKITSVGRWSVFGEVI 369
++V+ +T + L G LVKITS ++ G V+
Sbjct: 533 LKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577
>TIGR_CMR|CJE_1086 [details] [associations]
symbol:CJE_1086 "MiaB-like tRNA modifying enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
PIR:C81376 RefSeq:YP_179079.1 ProteinModelPortal:Q5HUF6
STRING:Q5HUF6 GeneID:3231595 KEGG:cjr:CJE1086 PATRIC:20043981
KO:K03423 OMA:GCRTNLF ProtClustDB:CLSK872324
BioCyc:CJEJ195099:GJC0-1112-MONOMER Uniprot:Q5HUF6
Length = 416
Score = 233 (87.1 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 85/337 (25%), Positives = 147/337 (43%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
K K L G V +G L + + ++G D++ E + +E+ L+
Sbjct: 66 KGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLN---FID 122
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
D+ N + I GC AC+YC RG S ++L+ +V + A+G E+
Sbjct: 123 KDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEI 182
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ + G+YG G L LL + L G +R+G P + E E+L
Sbjct: 183 VLTGTNIGSYGLKNGTTLGKLLQKMGQIL---GIKRIRLGSLEPAQLDE---SFLEILDE 236
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+ +Q S+ +L M R +T +D + + +T+ G + TD I PGE+
Sbjct: 237 AWLERHLHIALQHTSEKMLRIMRRRSHTDNDLK-LFNTIAS--KGYALGTDFIVAHPGES 293
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV-KKRSRELTSVFEAFTP 306
+E + + + KE+ +H F PR T +A MK V + + K+R L S+ E
Sbjct: 294 EELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNY 353
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
+ +V + E DG G+ + + ++ + S
Sbjct: 354 EFRKKNQVSLEVLVENQKDGF-FEGYDQFFNKIKIKS 389
>RGD|708387 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein 1"
species:10116 "Rattus norvegicus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0007420 "brain development"
evidence=TAS] [GO:0008283 "cell proliferation" evidence=NAS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0019887
"protein kinase regulator activity" evidence=TAS] [GO:0032403
"protein complex binding" evidence=IDA] [GO:0045664 "regulation of
neuron differentiation" evidence=TAS] [GO:0045736 "negative
regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=ISO;ISS] [GO:0045859 "regulation of protein
kinase activity" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 RGD:708387 GO:GO:0005737
GO:GO:0045664 GO:GO:0007420 GO:GO:0032403 GO:GO:0046872
GO:GO:0008283 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0019887 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 OrthoDB:EOG4SQWWK EMBL:AF177477 EMBL:BC066666
IPI:IPI00203631 RefSeq:NP_663773.1 UniGene:Rn.203271
ProteinModelPortal:Q9JLH6 IntAct:Q9JLH6 STRING:Q9JLH6
Ensembl:ENSRNOT00000021418 GeneID:252827 KEGG:rno:252827
InParanoid:Q9JLH6 NextBio:623881 Genevestigator:Q9JLH6
Uniprot:Q9JLH6
Length = 586
Score = 191 (72.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 199
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 334 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 385
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 386 QSGSSRVLEAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLR 445
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 301
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 446 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 489
Score = 92 (37.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 38/126 (30%), Positives = 56/126 (44%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V G QQ V+ ++ET + +P P
Sbjct: 198 LLAG--PDAYRDLPRLLAVVESG-QQAANVLLSLDET---------YADIMPVQTSPSAT 245
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 246 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQNV 301
Query: 136 GAYGRD 141
++ RD
Sbjct: 302 NSF-RD 306
>TIGR_CMR|SPO_0277 [details] [associations]
symbol:SPO_0277 "MiaB-like tRNA modifying enzyme"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_165541.1 ProteinModelPortal:Q5LX67
GeneID:3196395 KEGG:sil:SPO0277 PATRIC:23373805
ProtClustDB:CLSK933203 Uniprot:Q5LX67
Length = 418
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 69/257 (26%), Positives = 121/257 (47%)
Query: 88 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 147
GC CT+C + RG+ S +V +++ ++ G EV L+ D ++G D+ P
Sbjct: 146 GCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSWGADLPAQ-P 204
Query: 148 ILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 205
L + + + L PD LRI + + E+L + + P + LH+ +Q G D
Sbjct: 205 KLGDLVMRILRLVPD-LPRLRISSIDSIEVDENLMQ--GIATEPRLMPHLHLSLQHGDDL 261
Query: 206 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 265
+L M R + D + L P M DII GFP ET+ F ++ L+ +
Sbjct: 262 ILKRMKRRHLRDDAIRFAEEARRLRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTW 321
Query: 266 VHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP-YLGME-GRVERIWITEI 322
+H+ + R GTPAA++ +V ++K+R+ L + + +L + GR RI +
Sbjct: 322 LHVFPYSRREGTPAAKIPSQVNGKIIKERAARLRAAGDRRVALHLAEQVGRSHRILM--- 378
Query: 323 AADGIHLVGHTKGYVQV 339
+ H+ G T+ + +V
Sbjct: 379 --ESPHM-GRTEQFTEV 392
>UNIPROTKB|Q48FA7 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:YP_275930.1 ProteinModelPortal:Q48FA7
STRING:Q48FA7 GeneID:3560255 KEGG:psp:PSPPH_3792 PATRIC:19977023
Uniprot:Q48FA7
Length = 447
Score = 226 (84.6 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 77/295 (26%), Positives = 133/295 (45%)
Query: 15 LVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL- 71
++V GC+ + ++++ +S+ G QQ ++VV V H+V + P +DL
Sbjct: 79 VIVTGCMGVDANVIRDVHPSVLSVTGPQQYEQVVNAV------HDVVPPRKDHNPLIDLV 132
Query: 72 -PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
P+ V+ + L I+ GC +C++C RG L S V ++ + ++ GVKE+
Sbjct: 133 PPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKSGVKEL 192
Query: 129 WLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ S+DT AYG D+ G + + + L G +R+ P H+
Sbjct: 193 LVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLHYVYP---YPHVD 248
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ ++ + +L +P Q S +L M R + E P + I + I
Sbjct: 249 ELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPDLIIRSTFI 308
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKR 293
GFPGET+EDF ++ + E + +V Q+ P G PA + VP V + R
Sbjct: 309 VGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDR 363
>UNIPROTKB|Q9KNW0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 224 (83.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 89/347 (25%), Positives = 149/347 (42%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV 58
+DT+ K K ++V GC+ +++++ + I G V+E V + +
Sbjct: 89 LDTIGEALKENGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAP 143
Query: 59 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ H + V+ K L I+ GC CT+C RG L S V ++G
Sbjct: 144 KPAHNPFTSLVPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEA 203
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGM 169
+ GVKE+ + S+DT AYG D +L P+ N A+ EL G +R+
Sbjct: 204 ERLKNAGVKELLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHY 262
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
P H+ EI ++ V +L +P Q S VL M R + E+
Sbjct: 263 VYP---YPHVDEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREI 319
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 288
P + I + I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P
Sbjct: 320 CPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPED 379
Query: 289 VVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 333
V + R V + + + G ++ I E+ +G +G T
Sbjct: 380 VKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>TIGR_CMR|VC_2620 [details] [associations]
symbol:VC_2620 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 224 (83.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 89/347 (25%), Positives = 149/347 (42%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV 58
+DT+ K K ++V GC+ +++++ + I G V+E V + +
Sbjct: 89 LDTIGEALKENGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAP 143
Query: 59 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ H + V+ K L I+ GC CT+C RG L S V ++G
Sbjct: 144 KPAHNPFTSLVPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEA 203
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGM 169
+ GVKE+ + S+DT AYG D +L P+ N A+ EL G +R+
Sbjct: 204 ERLKNAGVKELLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHY 262
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
P H+ EI ++ V +L +P Q S VL M R + E+
Sbjct: 263 VYP---YPHVDEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREI 319
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 288
P + I + I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P
Sbjct: 320 CPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPED 379
Query: 289 VVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 333
V + R V + + + G ++ I E+ +G +G T
Sbjct: 380 VKQDRFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>UNIPROTKB|P0AEI4 [details] [associations]
symbol:rimO "ribosomal protein S12 D88
methylthiotransferase" species:83333 "Escherichia coli K-12"
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0035599 "aspartic acid
methylthiotransferase activity" evidence=IDA;IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0018339
"peptidyl-L-beta-methylthioaspartic acid biosynthetic process from
peptidyl-aspartic acid" evidence=IEA;IMP;IDA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 TIGRFAMs:TIGR01125 KO:K14441 PIR:C64821
RefSeq:NP_415356.1 RefSeq:YP_489108.1 ProteinModelPortal:P0AEI4
SMR:P0AEI4 DIP:DIP-48218N IntAct:P0AEI4 PRIDE:P0AEI4
EnsemblBacteria:EBESCT00000004134 EnsemblBacteria:EBESCT00000017680
GeneID:12932851 GeneID:945465 KEGG:ecj:Y75_p0808 KEGG:eco:b0835
PATRIC:32116873 EchoBASE:EB3251 EcoGene:EG13478
ProtClustDB:PRK14862 BioCyc:EcoCyc:G6435-MONOMER
BioCyc:ECOL316407:JW0819-MONOMER BioCyc:MetaCyc:G6435-MONOMER
Genevestigator:P0AEI4 GO:GO:0035599 Uniprot:P0AEI4
Length = 441
Score = 223 (83.6 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 78/327 (23%), Positives = 144/327 (44%)
Query: 15 LVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV-RLLHRKKLPALDL 71
++V GC+ ++E+ + I G ++V+E V H V + H L +
Sbjct: 77 VIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVH-----HYVPKPKHNPFLSLVPE 131
Query: 72 PKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
V+ + L I+ GC CT+C RG L S + ++ + ++ GVKE+ +
Sbjct: 132 QGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILV 191
Query: 131 SSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
S+DT AYG D+ G + + ++ +L G R+ P H+ ++
Sbjct: 192 ISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLG-IWTRLHYVYP---YPHVDDV 247
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++ + +L +P+Q S +L M R ++ + E+ P + + + I G
Sbjct: 248 IPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVG 307
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVPSAVVKKRSRELTSVF 301
FPGET+EDF ++ +KE + +V ++ P G A A +VP V ++R +
Sbjct: 308 FPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRFMQLQ 367
Query: 302 EAFTPYLGME--GRVERIWITEIAADG 326
+ + E GR + I E+ +G
Sbjct: 368 QQISAERLQEKVGREILVIIDEVDEEG 394
>UNIPROTKB|Q87Y01 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:NP_793781.1 ProteinModelPortal:Q87Y01
GeneID:1185698 KEGG:pst:PSPTO_4019 PATRIC:19999525
BioCyc:PSYR223283:GJIX-4085-MONOMER Uniprot:Q87Y01
Length = 443
Score = 222 (83.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 77/295 (26%), Positives = 132/295 (44%)
Query: 15 LVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL- 71
++V GC+ + ++ + +S+ G QQ ++VV V H+V + P +DL
Sbjct: 75 VIVTGCMGVDASVIRAVHPSVLSVTGPQQYEQVVNAV------HDVVPPRKDHNPLIDLV 128
Query: 72 -PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
P+ V+ + L I+ GC +C++C RG L S V ++ + ++ GVKE+
Sbjct: 129 PPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKSGVKEL 188
Query: 129 WLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ S+DT AYG D+ G + + + L G +R+ P H+
Sbjct: 189 LVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLHYVYP---YPHVD 244
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ ++ + +L +P Q S +L M R + E P + I + I
Sbjct: 245 ELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPDLIIRSTFI 304
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKR 293
GFPGET+EDF ++ + E + +V Q+ P G PA + VP V + R
Sbjct: 305 VGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDR 359
>WB|WBGene00017776 [details] [associations]
symbol:F25B5.5 species:6239 "Caenorhabditis elegans"
[GO:0016740 "transferase activity" evidence=IEA] [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0005575 "cellular_component" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 170 (64.9 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 199
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 301
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 101 (40.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 17 VAGCVPQGSR-DLKELEG-VSIVG----VQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
V GC+ + R DL E V+IV + + R+V V G V+L + +
Sbjct: 154 VLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSLDETYADVQ 213
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+V + I GC CTYC RG S +ES+V V+ + G K+V L
Sbjct: 214 PIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTL 273
Query: 131 SSEDTGAYGRDI 142
++ +Y RD+
Sbjct: 274 LGQNVNSY-RDM 284
>UNIPROTKB|Q09316 [details] [associations]
symbol:F25B5.5 "CDK5RAP1-like protein" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 170 (64.9 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 199
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 301
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 101 (40.6 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 17 VAGCVPQGSR-DLKELEG-VSIVG----VQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
V GC+ + R DL E V+IV + + R+V V G V+L + +
Sbjct: 154 VLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSLDETYADVQ 213
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+V + I GC CTYC RG S +ES+V V+ + G K+V L
Sbjct: 214 PIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTL 273
Query: 131 SSEDTGAYGRDI 142
++ +Y RD+
Sbjct: 274 LGQNVNSY-RDM 284
>UNIPROTKB|Q8EA37 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 220 (82.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 72/290 (24%), Positives = 135/290 (46%)
Query: 15 LVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
++V GC+ ++E+ + + I G + V++ V + + E H +
Sbjct: 107 VIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSLIPQT 162
Query: 73 KVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
V+ K L I+ GC CT+C RG L S S++ + ++ GV+E+ +
Sbjct: 163 GVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEILVV 222
Query: 132 SEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEHLKEI 182
S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ + + +
Sbjct: 223 SQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDLIPLM 281
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
AE L P +L +P+Q S +L M R + + E+ P + I + I G
Sbjct: 282 AEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVG 337
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
FPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 338 FPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>TIGR_CMR|SO_4072 [details] [associations]
symbol:SO_4072 "MiaB-like putative RNA modifying enzyme
YliG" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 220 (82.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 72/290 (24%), Positives = 135/290 (46%)
Query: 15 LVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
++V GC+ ++E+ + + I G + V++ V + + E H +
Sbjct: 107 VIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSLIPQT 162
Query: 73 KVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
V+ K L I+ GC CT+C RG L S S++ + ++ GV+E+ +
Sbjct: 163 GVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEILVV 222
Query: 132 SEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEHLKEI 182
S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ + + +
Sbjct: 223 SQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDLIPLM 281
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
AE L P +L +P+Q S +L M R + + E+ P + I + I G
Sbjct: 282 AEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTFIVG 337
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
FPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 338 FPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>TIGR_CMR|CJE_1627 [details] [associations]
symbol:CJE_1627 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:195099 "Campylobacter jejuni RM1221" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR RefSeq:YP_179608.1
ProteinModelPortal:Q5HSX7 STRING:Q5HSX7 GeneID:3232255
KEGG:cjr:CJE1627 PATRIC:20045051 HOGENOM:HOG000224766
ProtClustDB:CLSK872428 BioCyc:CJEJ195099:GJC0-1657-MONOMER
GO:GO:0018339 TIGRFAMs:TIGR01125 Uniprot:Q5HSX7
Length = 439
Score = 218 (81.8 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 71/291 (24%), Positives = 135/291 (46%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVV-EETLKGHEVRLLHRKKLPALD 70
LVV GC+ Q R+ +KEL V + GV +RV E++ ++T L + +
Sbjct: 72 LVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKTNLFSNSTYLQSENSKRI- 130
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+ + F++I GC C++C +G L S + S++ ++ ++A G K+
Sbjct: 131 ITGSNSHAFIKIAE---GCNQKCSFCAIPSFKGKLKSREISSIIAELKDLVARGYKDFSF 187
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
++DT +Y D G ++ ++ E+ G RI P E L I ++
Sbjct: 188 IAQDTSSYLFDKGEKDGLI--RLIDEVEKIKGIRAARILYLYPTSASEAL--IKRIIASE 243
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
++ +P+Q SD +L M R + + +++ L++ P + T I G PGE++
Sbjct: 244 IFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN-LMKSAPNSFLRTGFIVGHPGESEA 302
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
DF + +K++ F +V + + T A M++V V+ KR + + +
Sbjct: 303 DFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDMEQVSFKVINKRLKIIEKI 353
>UNIPROTKB|E2RIW1 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0016740
GO:GO:0051539 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 Pfam:PF01938 EMBL:AAEX03013894
Ensembl:ENSCAFT00000011867 Uniprot:E2RIW1
Length = 583
Score = 160 (61.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 56/208 (26%), Positives = 97/208 (46%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV--- 199
G+ LL+ V+ + P+ +RI T+P H K+ + + V F H+ V
Sbjct: 335 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIVLEFKHIFVCSL 384
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
SG + + Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 385 TSGLTCIAEIRLKGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 444
Query: 260 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 315
E ++ + + R T A R+K VP V +R EL +VF EA + G +
Sbjct: 445 EVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQ 504
Query: 316 RIWIT-EIAADGIHLVGHTKGYVQVLVP 342
+ + L G G ++V+ P
Sbjct: 505 LVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 95 (38.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 36/123 (29%), Positives = 55/123 (44%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V+ G QQ V+ ++ET + +P P
Sbjct: 199 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 246
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 247 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 302
Query: 136 GAY 138
++
Sbjct: 303 NSF 305
>UNIPROTKB|Q96SZ6 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0007420 "brain development" evidence=NAS]
[GO:0045664 "regulation of neuron differentiation" evidence=NAS]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:CH471077 GO:GO:0045664 GO:GO:0019901 GO:GO:0007420
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0045736 EMBL:AL355392 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AF152097 EMBL:AF161516 EMBL:AK023992 EMBL:AK027449
EMBL:AK292075 EMBL:BC001215 EMBL:BC050706 IPI:IPI00306312
IPI:IPI00328276 IPI:IPI00328277 IPI:IPI00328278 RefSeq:NP_057166.3
RefSeq:NP_057492.2 UniGene:Hs.435952 ProteinModelPortal:Q96SZ6
SMR:Q96SZ6 IntAct:Q96SZ6 STRING:Q96SZ6 PhosphoSite:Q96SZ6
DMDM:32129446 PaxDb:Q96SZ6 PRIDE:Q96SZ6 DNASU:51654
Ensembl:ENST00000339269 Ensembl:ENST00000346416
Ensembl:ENST00000357886 Ensembl:ENST00000452723 GeneID:51654
KEGG:hsa:51654 UCSC:uc002wyy.3 UCSC:uc002wyz.3 UCSC:uc010gek.3
UCSC:uc010gem.3 CTD:51654 GeneCards:GC20M031946 HGNC:HGNC:15880
MIM:608200 neXtProt:NX_Q96SZ6 PharmGKB:PA26313 HOVERGEN:HBG050975
InParanoid:Q96SZ6 PhylomeDB:Q96SZ6 ChiTaRS:CDK5RAP1
GenomeRNAi:51654 NextBio:55620 ArrayExpress:Q96SZ6 Bgee:Q96SZ6
CleanEx:HS_CDK5RAP1 Genevestigator:Q96SZ6
GermOnline:ENSG00000101391 Uniprot:Q96SZ6
Length = 601
Score = 192 (72.6 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 65/210 (30%), Positives = 106/210 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 197
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 351 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 400
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 401 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSL 460
Query: 258 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 313
++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 461 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGC 520
Query: 314 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 342
+ + + ++ L G G ++V+ P
Sbjct: 521 TQLVLVEGLSKRSATDLCGRNDGNLKVIFP 550
Score = 59 (25.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 28/103 (27%), Positives = 44/103 (42%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V+ G QQ V+ ++ET + +P +
Sbjct: 201 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMP-VQTSASA 247
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+ FV I+ GC C+YC RG S + S++ V+
Sbjct: 248 TSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILEEVK 287
>TIGR_CMR|SPO_0944 [details] [associations]
symbol:SPO_0944 "RNA modification enzyme, MiaB-family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 Gene3D:2.40.50.140
InterPro:IPR012340 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
RefSeq:YP_166197.1 ProteinModelPortal:Q5LUV8 GeneID:3196011
KEGG:sil:SPO0944 PATRIC:23375173 Uniprot:Q5LUV8
Length = 466
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 70/325 (21%), Positives = 136/325 (41%)
Query: 15 LVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
++V GC+ ++E +++ G Q ++V++ V + + LPA +
Sbjct: 100 VIVTGCLGAEPDYIREHHPRILAVTGPHQYEQVLDAVHGAVPPDPDPFVDL--LPASGVQ 157
Query: 73 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSS 132
R+ L I+ GC C +C RG L S +++ ++ +GVKE+ + S
Sbjct: 158 LTPRH--YSYLKISEGCNHKCKFCIIPDMRGKLASRPAHAVLREAEKLVDNGVKELLIIS 215
Query: 133 EDTGAYGRDIGVNLPILLN----AIVAELPPD-GS--TMLRIGMTNPPFILEHLKEIAEV 185
+DT AYG D + + N + + +L + G +R+ P H++E+ +
Sbjct: 216 QDTSAYGLDRKYDTNLWKNREVRSHITDLARELGQLDAWVRLHYVYP---YPHVRELIPL 272
Query: 186 LRHP-C-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ C + +L +P Q L M R + + E+ P + + + I G+
Sbjct: 273 MADAGCNLLPYLDIPFQHAHPDTLKRMARPAAAARTLDEIAAWREICPEITLRSTFIVGY 332
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
PGET+ +F ++ + E + +V Q+ G AR +P V + +E F A
Sbjct: 333 PGETEAEFQTLLDWMDEAQLDRVGCFQYENVAG---ARSNDLPDHVPAEVKQERWDRFMA 389
Query: 304 FTPYLGMEGRVERIW-ITEIAADGI 327
+ R+ + E+ D +
Sbjct: 390 KAQAISEAKLAARVGQVIEVIVDEV 414
>UNIPROTKB|H0Y721 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR013848 PROSITE:PS51449 SMART:SM00729
GO:GO:0003824 GO:GO:0051539 EMBL:AL355392 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
Pfam:PF01938 HGNC:HGNC:15880 ChiTaRS:CDK5RAP1
ProteinModelPortal:H0Y721 PRIDE:H0Y721 Ensembl:ENST00000427097
Bgee:H0Y721 Uniprot:H0Y721
Length = 256
Score = 143 (55.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 45/151 (29%), Positives = 77/151 (50%)
Query: 197 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 256
+PVQ+ + A SA Y+ + +V + E +PG+ +++D I GF GET+ED QTV+
Sbjct: 58 MPVQTSASAT-SAF--VYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 114
Query: 257 LIKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEG 312
L++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 115 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 174
Query: 313 RVERIWITEIAA-DGIHLVGHTKGYVQVLVP 342
+ + + ++ L G G ++V+ P
Sbjct: 175 CTQLVLVEGLSKRSATDLCGRNDGNLKVIFP 205
>UNIPROTKB|Q74FM0 [details] [associations]
symbol:yhcC-2 "Radical SAM domain iron-sulfur
cluster-binding oxidoreductase, TIGR01212 family" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
>TIGR_CMR|GSU_0586 [details] [associations]
symbol:GSU_0586 "radical SAM protein, TIGR01212 family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
>UNIPROTKB|Q675N4 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1 transcript variant 4" species:9606 "Homo sapiens" [GO:0009451
"RNA modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AL355392
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 UniGene:Hs.435952 HGNC:HGNC:15880
HOVERGEN:HBG050975 ChiTaRS:CDK5RAP1 EMBL:AY462284 IPI:IPI01014266
SMR:Q675N4 STRING:Q675N4 Ensembl:ENST00000544843 Uniprot:Q675N4
Length = 426
Score = 87 (35.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 38/139 (27%), Positives = 62/139 (44%)
Query: 16 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 75
++AG P RDL L V+ G QQ V+ ++ET + +P +
Sbjct: 201 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMP-VQTSASA 247
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 135
+ FV I+ GC C+YC RG S + S++ V+ + G+KEV L ++
Sbjct: 248 TSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNV 304
Query: 136 GAYGRDIGVNLPILLNAIV 154
++ RD N + N+ V
Sbjct: 305 NSF-RD---NSEVQFNSAV 319
Score = 75 (31.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 197
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 337 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 386
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P QSGS VL AM R Y+ + +V + E +P
Sbjct: 387 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP 420
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 516 500 0.00084 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 76
No. of states in DFA: 621 (66 KB)
Total size of DFA: 284 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.45u 0.12s 40.57t Elapsed: 00:00:02
Total cpu time: 40.47u 0.13s 40.60t Elapsed: 00:00:02
Start: Tue May 21 01:48:26 2013 End: Tue May 21 01:48:28 2013