BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010162
(516 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
Length = 612
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/517 (78%), Positives = 457/517 (88%), Gaps = 4/517 (0%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTLI+K KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 99 MDTLISKGKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 158
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L+RK LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TV
Sbjct: 159 LNRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTV 218
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I DGVKE+WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLK
Sbjct: 219 IDDGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLK 278
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIAEVLRHPCVYSFLHVPVQSGSDA+L+AMNREYT+++FRTVVDTL ELVPGMQIATDII
Sbjct: 279 EIAEVLRHPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDII 338
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETD+DF+QTVNLIK YKF QVHISQFYPRPGTPAARMKKVPS +VK+RSRELTSV
Sbjct: 339 CGFPGETDKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARMKKVPSNIVKQRSRELTSV 398
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWIT+IAADGIHLVGHTK YVQVL+ + +MLGTSA+VKITSVG
Sbjct: 399 FEAFTPYNGMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITSVG 458
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGEVI+ LNQ++ K ++ + + ++KCS CS +S ACS E +P ACG E C
Sbjct: 459 RWSVFGEVIETLNQINQK---SKSVEKMLSEEKCSPCSDPCDSCACSGESEPCACGPESC 515
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGN 479
G+ T+E+ V + ED N +N+IGWLLRKRKNQ K VEN +A GS+KKQEW G
Sbjct: 516 GGQSTIEQSDVLQNEVLREDQNRRNLIGWLLRKRKNQAQKMVENGIASGSQKKQEWAKGA 575
Query: 480 MGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLSTK 516
EWGVVDRALLGG++VS +A+LIH+GF+T+S+K
Sbjct: 576 PEEWGVVDRALLGGLIVSVFTTVAILIHLGFKTMSSK 612
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
Length = 630
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/517 (79%), Positives = 448/517 (86%), Gaps = 4/517 (0%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDT+IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 117 MDTIIAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 176
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV
Sbjct: 177 LTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTV 236
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ DGVKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLK
Sbjct: 237 VGDGVKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLK 296
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIAEVLRHPCVYSFLHVPVQSGSD VL+AMNREYT+S+FRTVVDTL ELVPGMQIATDII
Sbjct: 297 EIAEVLRHPCVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTVVDTLTELVPGMQIATDII 356
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETD+DF QTV+LI EYK PQVHISQFYPRPGTPAARMKKVPS +VKKRSRELT+V
Sbjct: 357 CGFPGETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARMKKVPSNIVKKRSRELTAV 416
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWITEIA DGIHLVGHTKGYVQVLV + MLGTSA+VKITSVG
Sbjct: 417 FEAFTPYNGMEGRVERIWITEIATDGIHLVGHTKGYVQVLVIAPETMLGTSAIVKITSVG 476
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGEVI+ LNQ + +AS ++ S K S CS E+ ACS EP+ ACG E C
Sbjct: 477 RWSVFGEVIQTLNQTNRGVASAEKMPS---GGKYSPCSDPCETCACSKEPESCACGPESC 533
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGN 479
G+ LEE ++ D ED N +N+IGWLLRKRKNQ K VEN++AL S KKQEW G
Sbjct: 534 GGQNPLEESAIAQNDMLLEDRNRRNLIGWLLRKRKNQTQKIVENNIALESIKKQEWTKGT 593
Query: 480 MGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLSTK 516
WG VDRALLGGMLVS + I+ALL+H+GFRT STK
Sbjct: 594 FSMWGAVDRALLGGMLVSLVTIVALLLHLGFRTTSTK 630
>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/517 (76%), Positives = 442/517 (85%), Gaps = 13/517 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTLI K +S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 37 MDTLITKGRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 96
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L+RK LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTV
Sbjct: 97 LNRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTV 156
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
IADGVKE+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLK
Sbjct: 157 IADGVKEIWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLK 216
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+A VLRHPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDII
Sbjct: 217 EMAVVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDII 276
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+
Sbjct: 277 CGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSI 336
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWI+EIA DGIHLVGHTKGY+QVLV + +++GTSA+VKITSVG
Sbjct: 337 FEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVG 396
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGE+I+ LNQV+D I+ N + KCS CS E ACS E +P AC + C
Sbjct: 397 RWSVFGELIETLNQVNDNISLNEE---KFSLGKCSPCSVPGEICACSREAEPCACEPQSC 453
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGN 479
EGKI++EEG VS D E+ QN+ WLLR+RKN K +EN +A GSK+K+E G
Sbjct: 454 EGKISMEEGSVSRKDMLPEN---QNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGC 510
Query: 480 MGEWGVVDRALLGGML------VSFLIILALLIHVGF 510
M WG+VDR LLGG+ S+++ + + V F
Sbjct: 511 MNHWGLVDRVLLGGIFGILQRDCSYMLFHYIHLEVSF 547
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Vitis vinifera]
Length = 622
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/517 (76%), Positives = 442/517 (85%), Gaps = 13/517 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTLI K +S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 110 MDTLITKGRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 169
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L+RK LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTV
Sbjct: 170 LNRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTV 229
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
IADGVKE+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLK
Sbjct: 230 IADGVKEIWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLK 289
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+A VLRHPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDII
Sbjct: 290 EMAVVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDII 349
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+
Sbjct: 350 CGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSI 409
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWI+EIA DGIHLVGHTKGY+QVLV + +++GTSA+VKITSVG
Sbjct: 410 FEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVG 469
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGE+I+ LNQV+D I+ N + KCS CS E ACS E +P AC + C
Sbjct: 470 RWSVFGELIETLNQVNDNISLNEE---KFSLGKCSPCSVPGEICACSREAEPCACEPQSC 526
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGN 479
EGKI++EEG VS D E+ QN+ WLLR+RKN K +EN +A GSK+K+E G
Sbjct: 527 EGKISMEEGSVSRKDMLPEN---QNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGC 583
Query: 480 MGEWGVVDRALLGGML------VSFLIILALLIHVGF 510
M WG+VDR LLGG+ S+++ + + V F
Sbjct: 584 MNHWGLVDRVLLGGIFGILQRDCSYMLFHYIHLEVSF 620
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/518 (74%), Positives = 440/518 (84%), Gaps = 6/518 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 119 MDTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 178
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+V
Sbjct: 179 LNRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSV 238
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I +GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 INEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLK 298
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDII 358
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSV
Sbjct: 359 CGFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSV 418
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWITEIAADGIHLVGHTKGY+QVLV + MLGTSA VKITS+G
Sbjct: 419 FEAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIAPETMLGTSATVKITSIG 478
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGEVI+I++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C
Sbjct: 479 RWSVFGEVIEIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESC 535
Query: 421 EGKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMG 477
+G + + +E S E+ +N+I W+LR+RK+ + K E + + +++KQ G
Sbjct: 536 KGAVAVGDEVNSSRNVPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAG 595
Query: 478 GNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
G + EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 596 GRLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/518 (74%), Positives = 440/518 (84%), Gaps = 6/518 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 119 MDTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 178
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+V
Sbjct: 179 LNRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSV 238
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I +GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 INEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLK 298
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDII 358
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSV
Sbjct: 359 CGFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSV 418
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAFTPY GMEGRVERIWITEIAADGIHLVGHTKGY+QVLV ++ MLGTSA VKITS+G
Sbjct: 419 FEAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIASETMLGTSATVKITSIG 478
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGEVIKI++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C
Sbjct: 479 RWSVFGEVIKIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESC 535
Query: 421 EGKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMG 477
+G + + ++ S E+ +N+I W+LR+RK+ + K E + + +++KQ G
Sbjct: 536 KGAVAVGDKVNSSRNIPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAG 595
Query: 478 GNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
G + EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 596 GRLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
Length = 609
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/513 (73%), Positives = 436/513 (84%), Gaps = 10/513 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDT+I+K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 104 MDTIISKGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRL 163
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RKKLPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++V
Sbjct: 164 LTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSV 223
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GVKE+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLK
Sbjct: 224 ISEGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLK 283
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDII
Sbjct: 284 EIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDII 343
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF QT+NLIKEYK PQVHISQFYPRPGTPAARMKKVPS VVK+RSRELT+V
Sbjct: 344 CGFPGETDEDFLQTINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNV 403
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+FTPY GMEG+VERIWIT+IA+DG+HLVGHTKGY+QVLV + NMLGTSA+VKITSVG
Sbjct: 404 FESFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAMVKITSVG 463
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFG+VI+ +N V D A N+ + +Q C + ++ S EP+ ACG + C
Sbjct: 464 RWSVFGDVIETVNPVSDNKALNKLVPNQ-------DCGNSAKTGGFSEEPEYCACGNDIC 516
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNM 480
G+ TLE S ++ + +N IGW+LRKR++ K VE+++A GS KKQE G M
Sbjct: 517 CGQGTLENNDNSRGSAVPQNQSKRNFIGWMLRKREHLHKTVESELASGSVKKQE---GIM 573
Query: 481 GEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
+W VD+ LLGG+ +S L I+AL++ V FR +
Sbjct: 574 RKWDFVDKVLLGGISISILTIMALVVAVMFRVI 606
>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Glycine max]
Length = 518
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/513 (71%), Positives = 426/513 (83%), Gaps = 14/513 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGHEVRL
Sbjct: 17 MDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGHEVRL 76
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV++V
Sbjct: 77 LTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRRVKSV 136
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+ILEHLK
Sbjct: 137 ISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYILEHLK 196
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDII
Sbjct: 197 XIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDII 256
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
C FPGETDEDF QTVNLI+EYKFPQVHISQFYPRPGTPAARMKKVPS VVK+RSRELT V
Sbjct: 257 CRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTXV 316
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+FTPY GMEG+VERIWIT+IA+DG+HLVGHTKGY+QVLV + NMLGTSA+VKITSVG
Sbjct: 317 FESFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAVVKITSVG 376
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECC 420
RWSVFGE+ + +N D A N+ + +Q C S + ES AC N+ CC
Sbjct: 377 RWSVFGEIFETINHASDNKALNKLVPNQDLSSLCGGFSEEQESCACGNDI--------CC 428
Query: 421 EGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNM 480
+ TLE+ S R +++ + +N IGW+LRKR + K VE+++A GS KKQE G+M
Sbjct: 429 GQEGTLEKSDNS---RGSQNQSKRNFIGWMLRKRGHLHKTVESELASGSVKKQE---GSM 482
Query: 481 GEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
+W +VD+ LLGG+ +S L I+AL++ V FR +
Sbjct: 483 RKWDLVDKVLLGGISISILTIMALVVAVMFRVI 515
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 602
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/520 (69%), Positives = 403/520 (77%), Gaps = 46/520 (8%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTV LIK+YKF QVHISQFYPRPGTPAA+MKKV S +VK+RSR+LTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRDLTSV 418
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAF PY GMEGR ERIWITEIA DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVR-QDKCSSCSSQNESSACSNEPDPSACGLEC 419
RWSVFGEVI+ + ++NR S+ + CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKPPCSSNVSSCETCTCSAE----SCGEE- 527
Query: 420 CEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWM--- 476
R E N I R++ KG S+K++ M
Sbjct: 528 ----------------RSGEACNISGNIS-----RQDDQKG-------KSEKQETEMREV 559
Query: 477 ---GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
G ++ WG +D+AL+ G+ VS L IL LLI + R L
Sbjct: 560 VVPGSSVANWGFIDKALVCGVFVSSLTILVLLISIASRVL 599
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 601
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/515 (69%), Positives = 400/515 (77%), Gaps = 36/515 (6%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAF PY GME R ERIWITE+A DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISSQVRQD-KCSSCSSQNESSACSNEPDPSACGLEC 419
RWSVFGEVI+ + ++NR S+ CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKLPCSSNVSTCETCTCSAE----SCGEE- 527
Query: 420 CEGKITLEEGQVSWIDRFAEDIN-SQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGG 478
R E N S N+ G ++ KG ++ G
Sbjct: 528 ----------------RSGEACNISGNISG------QDDNKGKSKKEEKEVQEVVV-PGS 564
Query: 479 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 565 SVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
Length = 629
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/521 (66%), Positives = 406/521 (77%), Gaps = 16/521 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 116 MTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRL 175
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V
Sbjct: 176 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 235
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 236 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEHLK 295
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDII
Sbjct: 296 EIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDII 355
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTVNL+K+Y+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 356 CGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSV 415
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 416 FESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVG 475
Query: 361 RWSVFGEVIK---ILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGL 417
RWSVFGEVI+ + + S + + Q + ++C + AC+ S
Sbjct: 476 RWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSFGACTC----SDAAQ 531
Query: 418 ECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR-KNQLKGVENDVALGSKKKQEWM 476
+C G E + S + + + V L+R+ + +K E+D A K+ E
Sbjct: 532 QCNPGP---ERSENSTPQSCGDATHQEAVQSKLVRRNVEGAVKSSESDTA---KQVGEIQ 585
Query: 477 GGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 586 RLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 626
>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
Length = 613
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/529 (66%), Positives = 401/529 (75%), Gaps = 32/529 (6%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 100 MTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRL 159
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V
Sbjct: 160 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 219
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLK
Sbjct: 220 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLK 279
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDII
Sbjct: 280 EIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDII 339
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 340 CGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSV 399
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 400 FESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVG 459
Query: 361 RWSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSN 408
RWSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 460 RWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNP 519
Query: 409 EPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALG 468
P+ S G T +E S + R R + +K E+D A
Sbjct: 520 GPERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA-- 562
Query: 469 SKKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 563 -KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 610
>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
Length = 626
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/529 (66%), Positives = 401/529 (75%), Gaps = 32/529 (6%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 113 MTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRL 172
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V
Sbjct: 173 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 232
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLK
Sbjct: 233 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLK 292
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDII
Sbjct: 293 EIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDII 352
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 353 CGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSV 412
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 413 FESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVG 472
Query: 361 RWSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSN 408
RWSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 473 RWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNP 532
Query: 409 EPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALG 468
P+ S G T +E S + R R + +K E+D A
Sbjct: 533 GPERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA-- 575
Query: 469 SKKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 576 -KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 623
>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
Length = 621
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/529 (66%), Positives = 401/529 (75%), Gaps = 32/529 (6%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 108 MTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRL 167
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V
Sbjct: 168 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 227
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLK
Sbjct: 228 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLK 287
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDII
Sbjct: 288 EIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDII 347
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 348 CGFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSV 407
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 408 FESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVG 467
Query: 361 RWSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSN 408
RWSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 468 RWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNP 527
Query: 409 EPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALG 468
P+ S G T +E S + R R + +K E+D A
Sbjct: 528 GPERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA-- 570
Query: 469 SKKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 571 -KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 618
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
Length = 623
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/524 (66%), Positives = 409/524 (78%), Gaps = 22/524 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 110 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 169
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 170 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 229
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDI NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 230 VSEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 289
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+++FR VVDTL ELVPGMQIATDII
Sbjct: 290 EIAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTLYELVPGMQIATDII 349
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 350 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 409
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + ++LGTSA VKITSVG
Sbjct: 410 FELFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSLLGTSANVKITSVG 469
Query: 361 RWSVFGEVIK---ILNQVDDKIAS---NRRISSQVRQDKCSSCSSQNESSACSNEPDPSA 414
RWSVFGEVI+ ++ + + ++ I +QV + C + S + ACSNE
Sbjct: 470 RWSVFGEVIEGSVVVGEAPKQTSAKLQKEHIQNQVEEAGCCATDSCG-TCACSNEAQ--Q 526
Query: 415 CGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR--KNQLKGVENDVALGSKKK 472
C E CE S D+ Q + L +R + KG ++ A K+
Sbjct: 527 CSPERCE--------DTSHAPETCGDVTRQEALQPTLVRRSVEGTTKGSKSSAAHSLGKE 578
Query: 473 QEWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 515
Q+ + GV +D L G+ VSF + +ALL+ + + ST
Sbjct: 579 QQVK--VVTRRGVNIDTILWCGLAVSFAVTIALLVILTSKISST 620
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Brachypodium distachyon]
Length = 624
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/533 (65%), Positives = 402/533 (75%), Gaps = 46/533 (8%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 110 MTTLISKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 169
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V
Sbjct: 170 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIV 229
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL
Sbjct: 230 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLN 289
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VLRHPCVY+FLHVPVQSGSDAVL AMNREYT+S+FR VVDTL ELVPGMQIATDII
Sbjct: 290 EIASVLRHPCVYTFLHVPVQSGSDAVLKAMNREYTVSEFRMVVDTLCELVPGMQIATDII 349
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF QTV LIKEYK PQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 350 CGFPGETDEDFAQTVKLIKEYKLPQVHISQFYPRPGTPAARMKKVPSIEVKKRSRELTSV 409
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FEAF+PY G+EG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 410 FEAFSPYQGLEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSANVKITSVG 469
Query: 361 RWSVFGEVI-------KILNQ----VDDKIASNRRISSQVRQDKCSSCS---SQNESSAC 406
RWSVFGEVI ++L Q ++ N + + C SC+ ++N + C
Sbjct: 470 RWSVFGEVIEGSIAAKEVLKQNPAEAQEEYRENHAEEATCSTNSCGSCACSGAENVAQQC 529
Query: 407 ----SNEPD--PSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKG 460
S +P P+ CG CE E Q + + R E +K
Sbjct: 530 GPHRSEDPSDAPTDCGDATCE-----EAAQYTLVRRNVE----------------RTMKT 568
Query: 461 VENDVALGSKKKQEWMGGNMGEWGV--VDRALLGGMLVSFLIILALLIHVGFR 511
E+D K Q+ N+ V +DR L G+ VSF LAL + + ++
Sbjct: 569 RESDTGKPVVKDQQV---NLANRRVINIDRILWVGLAVSFATTLALFVLLSYK 618
>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 626
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/524 (66%), Positives = 407/524 (77%), Gaps = 19/524 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 110 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 169
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 170 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 229
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 230 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 289
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 290 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 349
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 350 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 409
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VE+IWITEIA+DG+HLVGHTKGY+QVLV + +MLGTSA KITSVG
Sbjct: 410 FESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVG 469
Query: 361 RWSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSA 414
RWSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P
Sbjct: 470 RWSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP-- 526
Query: 415 CGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKK 472
CG + C L Q D Q + L +R KG ++ A + K+
Sbjct: 527 CGPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKE 581
Query: 473 QEWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 515
Q + GV +D L G+ SF + +ALL + + LST
Sbjct: 582 QRVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 623
>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 517
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/524 (66%), Positives = 407/524 (77%), Gaps = 19/524 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 240
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 241 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 300
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VE+IWITEIA+DG+HLVGHTKGY+QVLV + +MLGTSA KITSVG
Sbjct: 301 FESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVG 360
Query: 361 RWSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSA 414
RWSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P
Sbjct: 361 RWSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP-- 417
Query: 415 CGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKK 472
CG + C L Q D Q + L +R KG ++ A + K+
Sbjct: 418 CGPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKE 472
Query: 473 QEWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 515
Q + GV +D L G+ SF + +ALL + + LST
Sbjct: 473 QRVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 514
>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 489
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/370 (73%), Positives = 319/370 (86%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLKGHEVRL
Sbjct: 120 MENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLKGHEVRL 179
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV RV+ V
Sbjct: 180 LRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLVDRVKGV 239
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V LP D S MLRIGMTNPP+IL+HL+
Sbjct: 240 VAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPYILKHLE 299
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA +L HPCVYSFLHVPVQSGSD VL AMNREYT+SDF+ V DTL+ LVP + +ATDII
Sbjct: 300 SIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTLLRLVPDLHLATDII 359
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET EDF T+ L+KEYKF Q+HISQFYPRPGTPAARMK+VP+A VKKRSRELT++
Sbjct: 360 CGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVPTAEVKKRSRELTTL 419
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F PY GMEG+ +R+W+T++A+DG+HLVGH K YVQVL+P ++G+S VKI SV
Sbjct: 420 FESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVLLPEAEGLMGSSVDVKIISVN 479
Query: 361 RWSVFGEVIK 370
RWSV GEV+K
Sbjct: 480 RWSVMGEVLK 489
>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
Length = 421
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/367 (74%), Positives = 326/367 (88%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+TLI K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+L
Sbjct: 55 METLIRKGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKL 114
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R LP+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V
Sbjct: 115 LRRSTLPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGV 174
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLK
Sbjct: 175 VSEGVTEIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLK 234
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIAE+LRHPCVYSFLHVPVQSGSD+VL+AM REYT+++F+ V DTLIELVP + IATDII
Sbjct: 235 EIAEILRHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLIELVPDIHIATDII 294
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LT++
Sbjct: 295 CGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTNL 354
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+FTPY MEG+V R+W+T+ AADGIHLVGHTK YVQVL+PS +LG++ KITSVG
Sbjct: 355 FESFTPYSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVG 414
Query: 361 RWSVFGE 367
RWSV E
Sbjct: 415 RWSVKAE 421
>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
Length = 421
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/367 (74%), Positives = 324/367 (88%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+TLI K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+L
Sbjct: 55 METLIRKGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKL 114
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R LP+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V
Sbjct: 115 LRRSTLPSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGV 174
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLK
Sbjct: 175 VSEGVTEIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLK 234
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
EIAE+LRHPCVYSFLHVPVQSGSD+VL AM REYT+++F+ V DTLIELVP + IATDII
Sbjct: 235 EIAEILRHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLIELVPDIHIATDII 294
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LTS+
Sbjct: 295 CGFPGETSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTSL 354
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+FTPY MEG+V R+W+T+ AADGIHLVGHTK YVQVL+PS +LG++ KITSVG
Sbjct: 355 FESFTPYSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVG 414
Query: 361 RWSVFGE 367
RWSV E
Sbjct: 415 RWSVKAE 421
>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
Length = 558
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/440 (54%), Positives = 318/440 (72%), Gaps = 31/440 (7%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+T++ + K+A K L+VAGCVPQG + KEL+ VS++GV QIDRVVE +E TL G VR+
Sbjct: 88 MNTVLERGKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRM 147
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV
Sbjct: 148 LEKKTLPRLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQA 207
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I++GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL
Sbjct: 208 ISEGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLD 267
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE +RHP VY+++H+PVQSGS+AVL AM REYT+ +FRTV DTL+E VPGM IATD+I
Sbjct: 268 AVAEAMRHPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTLLEAVPGMVIATDVI 327
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDE + +T+ LI+EYKFP+VHISQFYPRPGTPAARMK+VP+ +VK RSRELT +
Sbjct: 328 CGFPGETDEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARMKRVPTQIVKGRSRELTVL 387
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKI 356
FE++ P+ + G+ ER+W+++IA DG LV HTK Y Q+L+P +++G SA+V+I
Sbjct: 388 FESYQPHQHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRAHLMGRSAMVEI 447
Query: 357 TSVGRWSVFGEVIKILN--------------------QVDDKIASNRRI----SSQVRQD 392
RWS V+++++ + +K+ +R+ + ++ +
Sbjct: 448 YESSRWSCKARVLEVIDADPTVARVRLSVIPSEEESKMIREKLTKGKRVRIKKAQEMPET 507
Query: 393 KCSSCSSQNESSACSNEPDP 412
CS C S S+C + +P
Sbjct: 508 GCSVCGSD---SSCPSSKEP 524
>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 516
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 299/384 (77%), Gaps = 5/384 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+T+I + K+A K +V+AGCVPQG + KEL VS++GV QIDRVVE +E TL G VR+
Sbjct: 93 MNTVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRM 152
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV
Sbjct: 153 LEKKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQA 212
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL
Sbjct: 213 MAEGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLD 272
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE +RHP VY+++H+PVQSGS+AVL M REYT+ +F+ V DTL+ VPGM IATDII
Sbjct: 273 AVAEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTLLAAVPGMVIATDII 332
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETDE + +T++LI+EYKFP+VHISQFYPRPGTPAA+MK+VP+ +VK RSRELT++
Sbjct: 333 CGFPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKMKRVPTQIVKARSRELTAL 392
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKI 356
FE++ P+ + G+ ER+W+++IA DG LV HTK Y Q+L+P ++G SA+V+I
Sbjct: 393 FESYMPHEHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRARLMGRSAMVEI 452
Query: 357 TSVGRWSVFGEVIKILNQVDDKIA 380
RWS V+++L +VD +A
Sbjct: 453 YEAARWSCKARVLEVL-EVDPTVA 475
>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
C-169]
Length = 494
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/371 (62%), Positives = 293/371 (78%), Gaps = 2/371 (0%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TL+A+ K+ K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +
Sbjct: 69 MSTLVARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHM 128
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +KKLP LDLPKVRRN VEILP++ GCLGACTYCKTKHARG LGSY + +LV R
Sbjct: 129 LAKKKLPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAA 188
Query: 121 IADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
D V+EVWLSSEDTGAYGRD+ +LP LL A+ A LP DG T+LRIGMTNPPFILEHL
Sbjct: 189 AVDPLVREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHL 248
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+IAE L HPCV+S+LHVPVQSGSDAVL+AMNREYT ++FR V DTL+ELVPG+++ATDI
Sbjct: 249 PDIAEALNHPCVFSYLHVPVQSGSDAVLAAMNREYTSAEFRRVADTLLELVPGLELATDI 308
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFPGETDEDF T+ L+++Y+FP HISQFYPRPGTPAARMKK+P+ V K RSR LT+
Sbjct: 309 ICGFPGETDEDFEATMALVRQYRFPHTHISQFYPRPGTPAARMKKLPNGVAKARSRALTA 368
Query: 300 VFEAFTP-YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+ + F Y + G ++R+ + E+AADG HLVGHTK Y+QVL+ ++G+ V++T+
Sbjct: 369 LVDGFGDCYQRLVGSLQRVCVVELAADGRHLVGHTKSYIQVLLEPQEGLMGSVVTVRVTA 428
Query: 359 VGRWSVFGEVI 369
RW+V G+++
Sbjct: 429 ASRWNVTGDIV 439
>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 542
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/375 (60%), Positives = 291/375 (77%), Gaps = 4/375 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G VR+
Sbjct: 167 MNTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRM 226
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY E+LV RV+T
Sbjct: 227 LAKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTA 286
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
IA+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 287 IAEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLD 346
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE + HP VY+FLH+PVQ+GSDAVL M REY ++DF VVDTL+E VPG+ IATDII
Sbjct: 347 AVAEAMHHPGVYAFLHIPVQAGSDAVLGRMKREYVVADFEKVVDTLLERVPGITIATDII 406
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET+ED+ T+ L ++Y F ++H+SQFYPRPGTPAARMKKV S VK+RSRELT+
Sbjct: 407 CGFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAARMKKVNSREVKRRSRELTNY 466
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKI 356
E++ P+ + G +R+W+T+IA DGI LV HTK YVQVL+P ++G SA+VKI
Sbjct: 467 IESYLPHGALVGTTQRVWVTDIAKDGISLVAHTKSYVQVLLPGGEAERARLMGKSAVVKI 526
Query: 357 TSVGRWSVFGEVIKI 371
RW V GEV+++
Sbjct: 527 IESARWYVRGEVLEV 541
>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
Length = 435
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/374 (59%), Positives = 289/374 (77%), Gaps = 4/374 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+T+I K K+ K LV+AGCVPQG + KELE +S++GV QIDR+V+VVE TL G VRL
Sbjct: 62 MNTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRL 121
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T
Sbjct: 122 LEKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTA 181
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
IA+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 182 IAEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLD 241
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE + HP VY+FLH+PVQ+GSDAVL M REY +++F V DTL+ VPG+ IATDII
Sbjct: 242 AVAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTLLAKVPGITIATDII 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET ED+ +T+ L ++Y+F ++H+SQFYPRPGTPAARMK+V + VK+RSRELT+
Sbjct: 302 CGFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARMKRVDTKEVKRRSRELTAY 361
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKI 356
E++ P+ + G +R+W+T++A D + LVGHTK YVQVL+P + ++G SA V+I
Sbjct: 362 IESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTKSYVQVLLPGGEANRARLMGKSAEVRI 421
Query: 357 TSVGRWSVFGEVIK 370
RW V GEVI+
Sbjct: 422 IDAHRWHVTGEVIE 435
>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
variabilis]
Length = 499
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 283/376 (75%), Gaps = 7/376 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
MDTL+ + + K L+VAGCVPQG R EL G+S++GV QIDRVVE VEETLKGH V+L
Sbjct: 124 MDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQL 183
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY LV R
Sbjct: 184 LAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAAA 243
Query: 121 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
AD V+E+WLSSEDTGAYGRDIG +LP LL +V LPPDG MLR+GMTNPPFILEHL
Sbjct: 244 AADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEHL 303
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ +LR V+S+LHVPVQSGSDAVL+AM REY+ + FR V DTL+ VPG+++ATDI
Sbjct: 304 AEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREYSAAQFRRVCDTLLAAVPGLELATDI 363
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFPGET+ED T+ L+ +Y+FP HISQFYPRPGTPAARM++VP+AVVK+RSRE+T+
Sbjct: 364 ICGFPGETEEDHGATLALLDKYRFPHCHISQFYPRPGTPAARMRRVPTAVVKQRSREVTA 423
Query: 300 VFEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS-----TGNMLGTSAL 353
E++ Y G+ G +R + + AADG+H V H K Y QVLVP+ +G++LG
Sbjct: 424 AVESWCGSYSGLVGATQRCCVVDTAADGVHAVAHNKAYTQVLVPAEAPDGSGSLLGCVVE 483
Query: 354 VKITSVGRWSVFGEVI 369
++ S RWSV EV+
Sbjct: 484 ARVVSASRWSVKAEVV 499
>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/372 (60%), Positives = 283/372 (76%), Gaps = 3/372 (0%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M LIA K+ K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V +
Sbjct: 64 MSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVSM 123
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY +L RVR
Sbjct: 124 LAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQA 183
Query: 121 IADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
AD V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEHL
Sbjct: 184 AADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEHL 243
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+ + + LRHPCV+S+LHVPVQS SDAVL AM REYT+++FR V+DTL+ VPGM++ATDI
Sbjct: 244 EALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDTLLAGVPGMELATDI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I FPGE+ ED T+ L++ Y+FP HISQFYPRPGTPAARMK K+P+ V K+RSREL
Sbjct: 304 ITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAARMKNKIPTQVSKQRSRELA 363
Query: 299 SVFEAFTP-YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +++ Y + G V+R + + AADG+ LV HT+ Y QVL+ ++G V I
Sbjct: 364 AEVDSWADVYQHLVGTVQRAVVVDTAADGVSLVAHTRSYTQVLLEPQPGLMGAVVEVAID 423
Query: 358 SVGRWSVFGEVI 369
S RWSV G V+
Sbjct: 424 SASRWSVRGRVV 435
>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
Length = 649
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/414 (55%), Positives = 309/414 (74%), Gaps = 6/414 (1%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
L+ K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VRLL +
Sbjct: 120 LVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVRLLSK 179
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +TVI++
Sbjct: 180 NRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQTVISE 239
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
GV E+WLSSEDTGAYG DIG +LP LL ++ E+ PDG MLR+GMTNPP+IL+HL IA
Sbjct: 240 GVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHLDAIA 297
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
EVL+H VYSFLHVPVQSGSD VL AMNREYT ++FR V D L+ VP + +ATDIICGF
Sbjct: 298 EVLKHERVYSFLHVPVQSGSDDVLLAMNREYTAAEFRRVADELLAKVPDLTLATDIICGF 357
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
P ET+E F++T++L+++Y+F ++ISQFYPRPGTPAA+MK+VP+ VVK RSR+LT +FE
Sbjct: 358 PSETEEHFDETMDLVEKYRFHIMNISQFYPRPGTPAAKMKRVPTQVVKNRSRKLTKLFET 417
Query: 304 FTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
F PY + G +++W+ TE++ D + V HTK Y +VL+P +++G SA V++ + R+
Sbjct: 418 FEPYTHLVGTTQKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCSAEVRVLTAARF 477
Query: 363 SVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACG 416
+ GEVI ++ + I Q+R + S + ++++ + + + S+C
Sbjct: 478 HITGEVI---SRSQPATVAAAAIREQIRTEGDLSAADRSKALSKAQKAAASSCN 528
>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Amphimedon queenslandica]
Length = 550
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/385 (57%), Positives = 284/385 (73%), Gaps = 9/385 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE LKG VRL K
Sbjct: 126 IKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLFGTK 185
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ P+L+LPK+R+N VEI+PIN GCL CTYCKTKH+RG+L SY + ++ R
Sbjct: 186 RGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEIISRA 245
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+GV E+WL+SEDTGAYGRDIGV LP LL +V E+ P+GS MLRIGMTNPP+I+E
Sbjct: 246 TQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPYIME 303
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VYSFLHVPVQSGSDAVL M REYT+ FR VVD L E VPG+ IAT
Sbjct: 304 HLEEMAKILSHPRVYSFLHVPVQSGSDAVLGEMKREYTIKQFRKVVDYLKEQVPGVTIAT 363
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
D+ICGFP ET+EDF++T++L+ EYKFP + I+QFYPRPGTPAA+MK++P+ VK RSR+L
Sbjct: 364 DVICGFPTETEEDFSETLSLVNEYKFPSLFINQFYPRPGTPAAKMKRIPTNEVKNRSRKL 423
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F ++TPY G +E I +TE++ D + VGHTK Y QVLVP ++G ALVKI
Sbjct: 424 TELFHSYTPYSKRVGGIETILVTEMSHDKRYYVGHTKYYEQVLVPQYKELMGKMALVKIV 483
Query: 358 SVGRWSVFGEVIKILNQVDDKIASN 382
S G+ + GE+I +L D + ++
Sbjct: 484 STGKHFMMGEIIDVLRLPSDSVIND 508
>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
Length = 614
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/393 (55%), Positives = 290/393 (73%), Gaps = 4/393 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+T++A+ K+ + P+VV GCVPQG + KEL VS++GV QIDR+VE VE TL+G V +
Sbjct: 138 MNTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLM 197
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR +
Sbjct: 198 LEKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLA 257
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I +GV E+WLSSEDTGAYG DIG N+ L A+V LP D S MLR+GMTNPP+IL HL
Sbjct: 258 IEEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLP 317
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IAE +RHP V+S++H+PVQSGS VL M REYT +F V D L+E VP + IATDII
Sbjct: 318 AIAEAMRHPSVFSWIHIPVQSGSSKVLDDMKREYTREEFEQVCDYLLEHVPDITIATDII 377
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET+ ++ +T++LI++YKFP+VHISQFY RP TPA RMK+V + VK RSRELT +
Sbjct: 378 CGFPGETESEWRETMSLIEKYKFPEVHISQFYARPNTPAFRMKRVNTLTVKNRSRELTKL 437
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKI 356
E++ P+ +EG+ ++WIT+IAADG+ LVGHTK Y Q+L+P + +GTSA VK+
Sbjct: 438 TESYFPWTKLEGQKMKVWITDIAADGVSLVGHTKSYSQILLPGGEENVEKYMGTSAHVKV 497
Query: 357 TSVGRWSVFGEVIKILNQVDDKIASNRRISSQV 389
S RWS E+I+ ++ I S+ + ++
Sbjct: 498 LSSSRWSCKAEIIENESEAAAGIQSSTSLHKKI 530
>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 624
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/367 (59%), Positives = 279/367 (76%), Gaps = 3/367 (0%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
L K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VRLL +
Sbjct: 119 LAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVRLLAK 178
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +TVI +
Sbjct: 179 NRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQTVINE 238
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
GV E+WLSSEDTGAYG DIG +LP L+ ++ E+ PDG MLR+GMTNPP+IL+HL IA
Sbjct: 239 GVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHLDAIA 296
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
EVL H VYSFLHVPVQSGSD VL AMNREYT +FR V D L+ VP + +ATDIICGF
Sbjct: 297 EVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELLAKVPDLTLATDIICGF 356
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
P ET+E F++T+ L+ +Y+F ++ISQFYPRPGTPAA+MK+V + +VK RSR+LT +FE
Sbjct: 357 PTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKMKRVSTQIVKNRSRKLTKLFET 416
Query: 304 FTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
F PY + ++W+ TE++ D + V HTK Y +VL+P +++G +A V++ + R+
Sbjct: 417 FEPYTRLVDTTLKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCTAEVRVLTAARF 476
Query: 363 SVFGEVI 369
GEVI
Sbjct: 477 HATGEVI 483
>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
Length = 529
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/373 (58%), Positives = 276/373 (73%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K KK LV+AGCVPQG + ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K
Sbjct: 128 IRKAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQK 187
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ L+LPK+R+N VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R
Sbjct: 188 RKNGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERA 247
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+T +GV E+W++SEDTGAYG DIGV+LP LL +V +P DG+ MLRIGMTNPP+ILE
Sbjct: 248 KTAFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLVKVIP-DGA-MLRIGMTNPPYILE 305
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VYSFLHVPVQ+GSD VL M REYT++DF VV+ L + VPG+ IAT
Sbjct: 306 HLEEMAKILSHPRVYSFLHVPVQAGSDKVLYDMRREYTVTDFEKVVNYLSDKVPGITIAT 365
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP E +DF +T+ LI+ +KFP V I+QFYPRPGTPAA+MK++P+ VK RSREL
Sbjct: 366 DIICGFPTEEKDDFAKTLRLIERHKFPSVFINQFYPRPGTPAAKMKRIPTEEVKNRSREL 425
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F+++ PY G +RI ITE++ DG H VGH K Y QVLVP ++LG + V I
Sbjct: 426 TQLFKSYRPYDHKLGERQRILITELSHDGNHFVGHNKFYDQVLVPMDMDLLGKTVEVDII 485
Query: 358 SVGRWSVFGEVIK 370
G+ + G V++
Sbjct: 486 ETGKHYLMGRVVR 498
>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
Length = 587
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/394 (53%), Positives = 283/394 (71%), Gaps = 6/394 (1%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
T++ K K +VVAGCVPQG R++ LE VS++G+ QIDRVVEV+EETLKG+ VRLL
Sbjct: 134 TVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKGNTVRLLG 193
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+K LP+LDLPK+R+N +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++ R V
Sbjct: 194 KKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILARCEQVCE 253
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GVKE+WL+SEDTGAYGRDIG ++ LL +V +LP D MLRIGMTNPP+ILEH++ I
Sbjct: 254 EGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYILEHMENI 311
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ +L HP V+SFLH+PVQ+G++ VL MNREYT +F V D L + VP + +ATDIICG
Sbjct: 312 SLILNHPRVFSFLHIPVQAGNNTVLENMNREYTREEFEYVCDYLKKNVPNVTLATDIICG 371
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+ F +T++L+K+Y+FP ++ISQFYPRPGT A +MKKVPS VK RS+++T VFE
Sbjct: 372 FPSETNAQFEETISLVKKYEFPIINISQFYPRPGTAAMKMKKVPSIDVKSRSKKITEVFE 431
Query: 303 AFTPYLGMEGRVERIWIT---EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+F + + G ++++WI E LVGHTK Y +VL+P +LG S L K+
Sbjct: 432 SFHRWDYLVGSIQKVWINDKEEKKGRQFQLVGHTKQYAKVLLPYNEELLGQSVLFKVEKA 491
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 393
W + G +++I N D N + V+ +K
Sbjct: 492 LMWHIEGTILEI-NPKDQVQVGNDYFNKYVKIEK 524
>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
Length = 563
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/364 (59%), Positives = 273/364 (75%), Gaps = 2/364 (0%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
++AK KS+ +VVAGCVPQG E + VSI+G QQI RVVEVVEE +KG+ V+LL
Sbjct: 64 NMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKLLG 123
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+++ PAL+LPK+RRN VEI+PI++GCL CTYCKTKHARG L SYT +S+V RVRTVI+
Sbjct: 124 QRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTVIS 183
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV+EVWLSSEDTGAYG+DI V+LP LL AIV LP DG MLR+GMTNPP ILEH + +
Sbjct: 184 EGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDALP-DG-VMLRVGMTNPPHILEHKEAV 241
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A VL HP V+ FLH+PVQ GSD VL M REYT DF +VD L+E VP + IATDIICG
Sbjct: 242 ARVLNHPRVFKFLHIPVQCGSDKVLQDMKREYTRKDFEVLVDYLLEHVPDITIATDIICG 301
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP E++EDF T++L+ +YKFP V+I+QFYPRPGT AA+M K+ S VVK RSR +T+ FE
Sbjct: 302 FPTESEEDFQHTMDLLDKYKFPIVNIAQFYPRPGTVAAKMPKLQSGVVKDRSRRVTAHFE 361
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++ + + GR ER+W+ E D ++VGHT GY QVL+P +LG S + ++ S +W
Sbjct: 362 SYRTWDHLVGRKERVWVIEYGKDENYVVGHTAGYTQVLLPRDAKLLGRSVIAQVVSADKW 421
Query: 363 SVFG 366
SV G
Sbjct: 422 SVKG 425
>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
Length = 553
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/397 (54%), Positives = 282/397 (71%), Gaps = 15/397 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 140 KHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVA 199
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
AL LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY + +V R R +G
Sbjct: 200 GAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIVERARQSFDEGC 259
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+V
Sbjct: 260 CEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAKV 317
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ IATDIICGFP
Sbjct: 318 LQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPT 377
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 378 ETEQDFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYE 437
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT V+IT ++S+
Sbjct: 438 PYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMM 497
Query: 366 GEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNE 402
E++ D++ R S+ Q K S+ SS+ +
Sbjct: 498 AEIL------DEESDWTRCDYSKQTQPKASTSSSRGQ 528
>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
Length = 570
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/364 (57%), Positives = 268/364 (73%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG + L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 142 KHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVNGRRVA 201
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+L LPKVR+N VEI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 202 GASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVERARQSFAEGC 261
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+V
Sbjct: 262 CEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAKV 319
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VYSFLHVPVQSGSD+VL M REY DF VVD L VPG+ IATDIICGFP
Sbjct: 320 LQHPRVYSFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRARVPGLTIATDIICGFPT 379
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+ DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F +
Sbjct: 380 ETEADFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYTYE 439
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G G V + +TEI+ D +H VGH K Y Q+L+P N+LGT V+ITSV ++S+
Sbjct: 440 PYAGRVGEVYAVLVTEISHDKLHYVGHNKSYEQILLPMRKNLLGTRVHVRITSVSKFSMM 499
Query: 366 GEVI 369
G+++
Sbjct: 500 GDIL 503
>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
Length = 554
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/364 (57%), Positives = 268/364 (73%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 139 KHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGRRVA 198
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V R R +G
Sbjct: 199 GAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIVDRARQSFDEGC 258
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+V
Sbjct: 259 CEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAKV 316
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ IATDIICGFP
Sbjct: 317 LQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPT 376
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 377 ETEQDFEETMTLCEKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYE 436
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 437 PYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMM 496
Query: 366 GEVI 369
GE++
Sbjct: 497 GEIL 500
>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
Length = 557
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/401 (54%), Positives = 282/401 (70%), Gaps = 18/401 (4%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK
Sbjct: 139 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKKVHGRRV 198
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 199 AGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 258
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+
Sbjct: 259 CCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPYILEHLEEVAK 316
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 317 VLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFP 376
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET+ DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F +
Sbjct: 377 TETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYTY 436
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G G++ + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 437 EPYSGRVGQIYTVLVTEISHDKLHYVGHNKSYEQVLLPMRENLLGTRVHVRITSASKFSM 496
Query: 365 FGEVIKILNQVDDKIASNRRISSQVRQD--KCSSCSSQNES 403
GE++ DD+ R + Q +D K + +++N++
Sbjct: 497 VGEIL------DDERDWTRCANKQEEKDAPKAEAVTTRNDN 531
>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 446
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/380 (55%), Positives = 273/380 (71%), Gaps = 14/380 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K A K +VVAGCVPQ S E +G+S++GVQQID+VV VVEETLKG+ +RL+
Sbjct: 67 IDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTIRLMKEA 126
Query: 65 KLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
K + LDLPKVRRN F+EI+PIN GCL CTYCKTKHARG LGSY++
Sbjct: 127 KEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLGSYSLAE 186
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTMLRIGMT 170
++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++ LL I+ + MLR+GMT
Sbjct: 187 IIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAMLRVGMT 246
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
NPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS VL M R Y + DF VVD L E V
Sbjct: 247 NPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQDFERVVDVLREKV 306
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
P + IATDIICGFP ETDEDF++T++L+++YKF +HISQFYPRPGTPAARMK++ + +V
Sbjct: 307 PCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPGTPAARMKRISTNIV 366
Query: 291 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
K RSR T+ FE++T Y + G +++I +TE +ADG H VGH K Y Q+LVP ++G
Sbjct: 367 KNRSRRATTFFESYTTYDSLVGTIQKILVTEQSADGNHYVGHNKPYQQILVPKNEKLMGQ 426
Query: 351 SALVKITSVGRWSVFGEVIK 370
+ V+I ++ + GE ++
Sbjct: 427 TFHVRIVRASKFYLMGEPLQ 446
>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
Length = 556
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 272/379 (71%), Gaps = 13/379 (3%)
Query: 2 DTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
DT + KS K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V
Sbjct: 123 DTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSV 182
Query: 59 RLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 110
+LL KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY
Sbjct: 183 QLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPP 242
Query: 111 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 170
E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P + MLR+GMT
Sbjct: 243 EEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPEN--CMLRVGMT 300
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
NPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M REY DF VVD L E V
Sbjct: 301 NPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERV 360
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
PG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +V
Sbjct: 361 PGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLV 420
Query: 291 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
KKR++ LT +F ++ PY G + + +TE++ D +H VGH K Y QVL+P N+LGT
Sbjct: 421 KKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGT 480
Query: 351 SALVKITSVGRWSVFGEVI 369
V+ITS ++S+ GE++
Sbjct: 481 RVNVRITSASKFSMVGEIL 499
>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
Length = 556
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 272/379 (71%), Gaps = 13/379 (3%)
Query: 2 DTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
DT + KS K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V
Sbjct: 123 DTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSV 182
Query: 59 RLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 110
+LL KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY
Sbjct: 183 QLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPP 242
Query: 111 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 170
E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P + MLR+GMT
Sbjct: 243 EEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPEN--CMLRVGMT 300
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
NPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M REY DF VVD L E V
Sbjct: 301 NPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERV 360
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
PG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +V
Sbjct: 361 PGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLV 420
Query: 291 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
KKR++ LT +F ++ PY G + + +TE++ D +H VGH K Y QVL+P N+LGT
Sbjct: 421 KKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGT 480
Query: 351 SALVKITSVGRWSVFGEVI 369
V+ITS ++S+ GE++
Sbjct: 481 RVNVRITSASKFSMVGEIL 499
>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
Length = 552
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/365 (56%), Positives = 264/365 (72%), Gaps = 10/365 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL KK
Sbjct: 137 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRV 196
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 197 AGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 256
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A
Sbjct: 257 CCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAN 314
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 315 VLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFP 374
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR++ LT +F ++
Sbjct: 375 TETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSY 434
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G + + +TE++ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 435 EPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSM 494
Query: 365 FGEVI 369
GE++
Sbjct: 495 VGEIL 499
>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila]
gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila SB210]
Length = 574
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 268/369 (72%), Gaps = 17/369 (4%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
T++ K KKP+VVAGCVPQG R++ LE VS++G+ QIDRVVEVVEETLKG++VRL
Sbjct: 131 TIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNKVRLYG 190
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+K LP+LDLPK+R CLG+CTYCKTKHARG LGSY E++V RV+TV
Sbjct: 191 KKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRVKTVCE 237
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GVKE+WL+SEDTGAYGRDIG ++ LL IV LP D MLR+GMTNPP+ILEHL+ +
Sbjct: 238 EGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILEHLQNM 295
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ +LRHP V+SFLH+PVQ+ ++ VL MNREYT +F V D L++ VP M IATDIICG
Sbjct: 296 STILRHPRVFSFLHIPVQAANNTVLENMNREYTCEEFEQVCDYLLKNVPNMTIATDIICG 355
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FPGET+ F+ T+ L+ +YKFP ++ISQFYPRPGT A +MKKVPS VK RS+++T +F+
Sbjct: 356 FPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGTAAMKMKKVPSQDVKMRSKKITELFD 415
Query: 303 AFTPYLGMEGRVERIWIT--EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
F + + G +RIWI E + LVGHTK Y +V++P +LG S ++K+T V
Sbjct: 416 TFKRWDHLLGTTQRIWINDKEDKKGVLQLVGHTKQYAKVMLPFEEELLGKSVIIKVTKVL 475
Query: 361 RWSVFGEVI 369
W + GE+I
Sbjct: 476 TWHIEGEII 484
>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
davidii]
Length = 572
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 272/372 (73%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A+VL HP VY+FLH+PVQS SDAVL AM REY ++DFR VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKVLNHPRVYAFLHIPVQSASDAVLMAMKREYCVADFRRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKYPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
(Silurana) tropicalis]
gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 553
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 273/373 (73%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 119 IKKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 178
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 179 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRA 238
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 239 AQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 296
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 297 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIAT 356
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL
Sbjct: 357 DIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKEL 416
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F +++PY G + + +TE + D + V H + Y QVLVP +G VKI
Sbjct: 417 SQLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRFYEQVLVPKDPAFVGKMVEVKIF 476
Query: 358 SVGRWSVFGEVIK 370
G+ + G+ ++
Sbjct: 477 EAGKHFMKGQPVQ 489
>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/387 (52%), Positives = 276/387 (71%), Gaps = 25/387 (6%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
L+ K KKP++V+GCVPQG R++K LE VS++G+ QIDRVVEVVEE LKGH V+LL
Sbjct: 153 NLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQIDRVVEVVEEALKGHNVKLLA 212
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HARG LGSY ++V R RT I
Sbjct: 213 KKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHARGKLGSYDPNAIVERARTAIE 272
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV E+WL+SEDTGAYGRDIG +LP LL +++A +P TMLR+GMTNPP+ILEHL+ +
Sbjct: 273 EGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--HTMLRVGMTNPPYILEHLQAM 330
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V D L+E V M +ATDIICG
Sbjct: 331 ADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEVCDFLVENVKDMTLATDIICG 390
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ KKVPS VKKRS +LT +F+
Sbjct: 391 FPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKWKKVPSQDVKKRSNDLTKLFD 450
Query: 303 AFTP---YLGMEGRVERIWITE--------IAADGIHLVGHTKGYVQVLVPSTGN----- 346
++T Y+G E + +WI + + L+GHTK Y +V++ +
Sbjct: 451 SYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMGHTKSYTKVVINQDADSLANQ 507
Query: 347 ----MLGTSALVKITSVGRWSVFGEVI 369
++G + +T +W + G ++
Sbjct: 508 PAASLIGKCVKIHVTETHKWHISGYIL 534
>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/387 (52%), Positives = 276/387 (71%), Gaps = 25/387 (6%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
L+ K KKP++V+GCVPQG R++K LE VS++G+ QIDRVVEVVEE LKGH V+LL
Sbjct: 153 NLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQIDRVVEVVEEALKGHNVKLLA 212
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HARG LGSY ++V R RT I
Sbjct: 213 KKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHARGKLGSYDPNAIVERARTAIE 272
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV E+WL+SEDTGAYGRDIG +LP LL +++A +P TMLR+GMTNPP+ILEHL+ +
Sbjct: 273 EGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--HTMLRVGMTNPPYILEHLQAM 330
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V D L+E V M +ATDIICG
Sbjct: 331 ADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEVCDFLVENVKDMTLATDIICG 390
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ KKVPS VKKRS +LT +F+
Sbjct: 391 FPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKWKKVPSQDVKKRSNDLTKLFD 450
Query: 303 AFTP---YLGMEGRVERIWITE--------IAADGIHLVGHTKGYVQVLVPSTGN----- 346
++T Y+G E + +WI + + L+GHTK Y +V++ +
Sbjct: 451 SYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMGHTKSYTKVVINQDADSLANQ 507
Query: 347 ----MLGTSALVKITSVGRWSVFGEVI 369
++G + +T +W + G ++
Sbjct: 508 PAASLIGKCVKIHVTETHKWHISGYIL 534
>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 642
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/387 (52%), Positives = 276/387 (71%), Gaps = 25/387 (6%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
L+ K KKP++V+GCVPQG R++K LE VS++G+ QIDRVVEVVEE LKGH V+LL
Sbjct: 151 NLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQIDRVVEVVEEALKGHNVKLLA 210
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HARG LGSY ++V R RT I
Sbjct: 211 KKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHARGKLGSYDPNAIVERARTAIE 270
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV E+WL+SEDTGAYGRDIG +LP LL +++A +P TMLR+GMTNPP+ILEHL+ +
Sbjct: 271 EGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--HTMLRVGMTNPPYILEHLQAM 328
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V D L+E V M +ATDIICG
Sbjct: 329 ADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEVCDFLVENVKDMTLATDIICG 388
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+ KKVPS VKKRS +LT +F+
Sbjct: 389 FPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKWKKVPSQDVKKRSNDLTKLFD 448
Query: 303 AFTP---YLGMEGRVERIWITE--------IAADGIHLVGHTKGYVQVLVPSTGN----- 346
++T Y+G E + +WI + + L+GHTK Y +V++ +
Sbjct: 449 SYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMGHTKSYTKVVINQDADSLANQ 505
Query: 347 ----MLGTSALVKITSVGRWSVFGEVI 369
++G + +T +W + G ++
Sbjct: 506 PAASLIGKCVKIHVTETHKWHISGYIL 532
>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Gallus gallus]
Length = 582
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 267/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 121 IKKAQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 180
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 181 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA 240
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILE
Sbjct: 241 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIP--EGAMLRLGMTNPPYILE 298
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IAT
Sbjct: 299 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIAT 358
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L
Sbjct: 359 DIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDL 418
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V I
Sbjct: 419 SQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEVNIY 478
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 479 EAGKHFMKGQPV 490
>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
Length = 557
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/365 (56%), Positives = 266/365 (72%), Gaps = 10/365 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL KK
Sbjct: 138 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLLQNKKKVHGRRV 197
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 198 AGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 257
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+
Sbjct: 258 CCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAK 315
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 316 VLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFP 375
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET+ DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 376 TETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSY 435
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G + + +TE++ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 436 EPYAKRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSM 495
Query: 365 FGEVI 369
GE++
Sbjct: 496 VGEIL 500
>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Pan paniscus]
gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 4 [Pan troglodytes]
Length = 536
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
sapiens]
gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
[Homo sapiens]
gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Nomascus leucogenys]
Length = 536
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIH 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIC 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like, partial [Gorilla gorilla
gorilla]
Length = 440
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 27 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 86
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 87 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 146
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 147 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 204
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD++L M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 205 HLEEMAKILNHPRVYAFLHIPVQSASDSILMEMKREYCVADFKRVVDFLKEKVPGITIAT 264
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 265 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 324
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 325 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 384
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 385 ESGKHFMKGQPV 396
>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
fascicularis]
Length = 576
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIC 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
laevis]
gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
Length = 556
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 273/373 (73%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 119 IKKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 178
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 179 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRA 238
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 239 TQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 296
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 297 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIAT 356
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++V + V K+R++EL
Sbjct: 357 DIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKEL 416
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G+ +++ +TE + D + V H + Y QVLVP + +G VKI
Sbjct: 417 SQLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRFYEQVLVPKDPDFMGKMVEVKIF 476
Query: 358 SVGRWSVFGEVIK 370
G+ + G+ ++
Sbjct: 477 EAGKHFMKGQPVQ 489
>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
Length = 555
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/374 (55%), Positives = 271/374 (72%), Gaps = 10/374 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K+ K LVVAGCVPQG ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K
Sbjct: 121 IKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLFGQK 180
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +LDLPK+R+N VEI+ IN GCL CTYCKTKHARG LGSY E +V R
Sbjct: 181 KADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIVNRA 240
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYG+DIGV LP LL +V +P G +RIGMTNPP+ILE
Sbjct: 241 KQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPYILE 298
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VYSFLHVPVQS S VL+ M REY DF VV+ L + VP + IAT
Sbjct: 299 HLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKREYIAEDFEHVVNYLRQRVPDLTIAT 358
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
D+ICGFP ET++DF +T++L+K+YKFP + I+QFYPRPGTPAARMK++P+ VK+R+RE+
Sbjct: 359 DLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFYPRPGTPAARMKRLPTEEVKRRTREV 418
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV-PSTGNMLGTSALVKI 356
+ +F+++T Y G V+ + +TE + DG+H VGH K Y QVLV G ++G V++
Sbjct: 419 SKLFQSYTTYDHKVGAVQEVLVTEESHDGVHYVGHNKAYDQVLVKKDEGELMGKIVKVEM 478
Query: 357 TSVGRWSVFGEVIK 370
TS G+ + G V++
Sbjct: 479 TSSGKHYLMGRVMQ 492
>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Otolemur garnettii]
Length = 583
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMRREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVL+P + +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLIPKNSSFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 EAGKHFMKGQPV 491
>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
1-like 1 [Ciona intestinalis]
Length = 516
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 269/373 (72%), Gaps = 9/373 (2%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
+I+K +S K +V+AGCV QG+ ++G+SI+GVQQIDRVVEVVEETLKG+ VRLL +
Sbjct: 123 MISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKGNTVRLLKQ 182
Query: 64 KKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
KK +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY V +V R
Sbjct: 183 KKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSYPVAEIVQR 242
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+IL
Sbjct: 243 AIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVGMTNPPYIL 300
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
+HL+E+ ++L HP VYSFLHVPVQSGSD L M REYT SDF VVDTL VPG+ IA
Sbjct: 301 DHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRASVPGISIA 360
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDIICGFP ETDEDF T+ L ++YKFP + I+QF+PRPGTPAARM ++ +KKR++
Sbjct: 361 TDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQEIKKRTKR 420
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
L+ +F ++ PY G+++++ +TEIA D IH VGH K Y QVL+P ++ G V+I
Sbjct: 421 LSELFRSYEPYGHQLGKIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLTGKMFEVEI 480
Query: 357 TSVGRWSVFGEVI 369
G+ + G+ I
Sbjct: 481 VETGKHFLKGKRI 493
>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Loxodonta africana]
Length = 578
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITVAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+++P+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQIPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE++ D V H + Y QVLVP + +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEVSFDSKFYVAHNRFYEQVLVPKNPSFMGKMVKVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
Length = 540
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/364 (57%), Positives = 267/364 (73%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP----- 67
K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 127 KHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEAGKKIG 186
Query: 68 --ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R + +GV
Sbjct: 187 GASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQAFEEGV 246
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTG YGRDIG +LP LL ++ E+ PDG M+R+GMTNPP+ILEHL+E++++
Sbjct: 247 CELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLEEMSKI 304
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+ IATDIICGFP
Sbjct: 305 LRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFEMVVNFLRERVPGLTIATDIICGFPT 364
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM+KVP+ VKKR++ L+ F++++
Sbjct: 365 ETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMQKVPTQDVKKRTKRLSEFFQSYS 424
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G ++ + +TE++ D H V H K Y QVLVP LG VKI ++S+
Sbjct: 425 PYDNRVGLIQDVLVTEVSHDKKHYVAHNKFYEQVLVPLKEEYLGKMIKVKIVETTKYSMK 484
Query: 366 GEVI 369
GE I
Sbjct: 485 GEPI 488
>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Macaca mulatta]
Length = 576
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SWVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIC 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 1 [Ovis aries]
gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 2 [Ovis aries]
gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 3 [Ovis aries]
Length = 578
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 272/372 (73%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SDAVL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILHHPRVYAFLHIPVQSASDAVLMEMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKEL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F +++PY G+ +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRIFHSYSPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPIFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
Length = 1590
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/388 (53%), Positives = 274/388 (70%), Gaps = 12/388 (3%)
Query: 14 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA----- 68
P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL KK
Sbjct: 122 PVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLGPKKRAGKRIGG 181
Query: 69 --LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V R G+
Sbjct: 182 ADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIV 241
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+ILEHL+ IA++L
Sbjct: 242 EVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYILEHLEGIAKIL 299
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP IATDII GFP E
Sbjct: 300 NHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTE 359
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 306
T+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R+++L++VF+++ P
Sbjct: 360 TEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTKKLSNVFKSYLP 419
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGRWSVF 365
+ G EG + ITE+A D + LVGHTK Y Q+LV ++G V + + S+
Sbjct: 420 FEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDKLMGKRVDVVVYQTTKHSML 479
Query: 366 GEVIKILNQVDDKIASNRRISSQVRQDK 393
G ++ + V IA N +I + ++ K
Sbjct: 480 GRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/374 (56%), Positives = 269/374 (71%), Gaps = 10/374 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I A K +VVAGCVPQ + L+G+S+VGVQQIDRV EVVEETLKGH VRLL K
Sbjct: 125 IEAAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAK 184
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K+ P L LPKVR+N +E++PIN GCL ACTYCKTK AR L SY V+ +V R
Sbjct: 185 KVDGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRA 244
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ V DGV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G M+R+GMTNPP+ILE
Sbjct: 245 QQVFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILE 302
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A++L HP VYSFLH+PVQSGSDA+L M REY + DF +VD L VPG+ IAT
Sbjct: 303 HLDEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIAT 362
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+ DF+ T+ L ++Y+FP + I+QF+PRPGTPAA+M KVP+ VK R++ L
Sbjct: 363 DIICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMTKVPANEVKTRTKRL 422
Query: 298 TSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
T +F ++ PY E G + + +TEI+ D H VGH K Y Q+L+P N+LG V+I
Sbjct: 423 TDLFHSYEPYKKYEAGTKQTVLVTEISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEI 482
Query: 357 TSVGRWSVFGEVIK 370
T ++S+FG+VI+
Sbjct: 483 TGCTKFSMFGKVIQ 496
>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
Length = 1581
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/388 (53%), Positives = 274/388 (70%), Gaps = 12/388 (3%)
Query: 14 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA----- 68
P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL KK
Sbjct: 122 PVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLGPKKRAGKRIGG 181
Query: 69 --LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V R G+
Sbjct: 182 ADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVARFEQAFEQGIV 241
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+ILEHL+ IA++L
Sbjct: 242 EVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYILEHLEGIAKIL 299
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP IATDII GFP E
Sbjct: 300 NHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNIATDIIAGFPTE 359
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 306
T+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R+++L++VF+++ P
Sbjct: 360 TEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTKKLSNVFKSYLP 419
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGRWSVF 365
+ G EG + ITE+A D + LVGHTK Y Q+LV ++G V + + S+
Sbjct: 420 FEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDELMGKRVDVVVYQTTKHSML 479
Query: 366 GEVIKILNQVDDKIASNRRISSQVRQDK 393
G ++ + V IA N +I + ++ K
Sbjct: 480 GRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIDERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
Length = 464
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 11 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 70
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 71 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 130
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 131 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 188
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQ SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 189 HLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 248
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 249 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 308
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 309 SRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIC 368
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 369 ESGKHFMKGQPV 380
>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
adamanteus]
Length = 577
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + KK +V+AGCVPQ L G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 121 IKKAQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 180
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY++E LV R
Sbjct: 181 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRG 240
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 241 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 298
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L VPG+ +AT
Sbjct: 299 HLEEMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKHVVDFLKTKVPGITVAT 358
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++EY+FP + I+QFYPRPGTPAA+M +VP+ + K+R++EL
Sbjct: 359 DIICGFPGETDEDFQETMKLVEEYRFPSLFINQFYPRPGTPAAKMPQVPAQIKKQRTKEL 418
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +++ +TE + D V H K Y Q+LVP + +G V+I
Sbjct: 419 SKLFHSYNPYDHKIGERQKVLVTEESFDSKFYVAHNKFYEQILVPKNPDFMGKMVEVEIF 478
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 479 EAGKHFMRGQPV 490
>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
taurus]
Length = 578
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKEL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRIFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Oryctolagus cuniculus]
Length = 571
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 272/372 (73%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL AM REY ++DF++VVD L E VPG+ IAT
Sbjct: 300 HLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYCVADFKSVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ + K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
Length = 558
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/367 (56%), Positives = 267/367 (72%), Gaps = 11/367 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +V+AGCVPQ + + G+SIVGV QIDRV EVVEETLKGH VRLL KKL
Sbjct: 133 KHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEVVEETLKGHSVRLLQAKKLNGKRVA 192
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
P L LPKVR+N +EI+PIN GCL ACTYCKTK AR L SY VE +V R V +GV
Sbjct: 193 GPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFARADLVSYPVEEIVQRAAHVFTEGV 252
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTG YGRDIG +LP LL +VA +P DG MLR+GMTNPP+ILEHL+E+A++
Sbjct: 253 CEIWLTSEDTGTYGRDIGTSLPELLWQLVAVIP-DGC-MLRLGMTNPPYILEHLEEMAKI 310
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLHVP+QSGSD+VLS M REY SDF +VD L + VPG+ IATDIICGFP
Sbjct: 311 LVHPKVYSFLHVPIQSGSDSVLSDMKREYCRSDFEQIVDFLNDKVPGITIATDIICGFPT 370
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF T+ L ++YKFP + I+QFYPRPGTPAA+M+++P+ VK R++ LT +F +
Sbjct: 371 ETEEDFEHTMTLCEKYKFPSLFINQFYPRPGTPAAKMQRIPADQVKVRTKRLTDLFYTYE 430
Query: 306 PYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
PY+G + G +++ +TEI+ D H VGH K Y QVL+P N+LG V+I + ++S
Sbjct: 431 PYVGKYVLGDRQKVLVTEISHDKKHYVGHNKCYEQVLLPMDKNLLGKLVEVEIVGITKFS 490
Query: 364 VFGEVIK 370
+ +V++
Sbjct: 491 MLAKVVQ 497
>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Oryzias latipes]
Length = 494
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/398 (53%), Positives = 277/398 (69%), Gaps = 15/398 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +VVAGCVPQ + L+ +SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 54 IKKAQEQDKKVVVAGCVPQAQPRMDYLKSLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQK 113
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV RV
Sbjct: 114 KEGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVKRV 173
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V ++P DG+ MLR+GMTNPP+ILE
Sbjct: 174 RQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEQIP-DGA-MLRLGMTNPPYILE 231
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IAT
Sbjct: 232 HLGEMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIAT 291
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+EDF +T+ L+K Y+FP + I+QFYPRPGTPAA+M++VP+ V K+R+REL
Sbjct: 292 DIICGFPGETEEDFQETLELVKLYRFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTREL 351
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G ++ + +TE + D + V H K Y QVLVP G V+I
Sbjct: 352 SQLFHSYNPYDHKVGEMQHVLVTEESFDAQYYVAHNKFYEQVLVPKKVEFKGKMIEVEIY 411
Query: 358 SVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCS 395
G+ + G V+D N I++ ++Q + S
Sbjct: 412 EAGKHFMKG------RPVEDSKPFNPSIAAPLQQGEVS 443
>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Oreochromis niloticus]
Length = 516
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 265/373 (71%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 118 IKKAQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQK 177
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 178 KDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERA 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILE
Sbjct: 238 RQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIP--EGAMLRLGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IAT
Sbjct: 296 HLEEMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+EDF T++L+K Y+FP + I+QFYPRPGTPAARM++V + V K+R++EL
Sbjct: 356 DIICGFPGETEEDFQATIDLVKAYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKEL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G + + +TE + D + V H K Y QVLVP G +V I
Sbjct: 416 SQVFHSYNPYDHKVGERQHVLVTEESFDSQYYVAHNKYYEQVLVPKRVEFKGKMIVVDIY 475
Query: 358 SVGRWSVFGEVIK 370
G+ + G+ ++
Sbjct: 476 EAGKHFMKGKPVE 488
>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Taeniopygia guttata]
Length = 582
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 272/372 (73%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + KK +V+AGCVPQ + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 121 IKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 180
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 181 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA 240
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 241 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPYILE 298
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 299 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGITIAT 358
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++ Y+FP + I+QFYPRPGTPAA+M +VP+AV K+R+++L
Sbjct: 359 DIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRTKDL 418
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F +++PY G +R+ +TE + D + V H Y QVLVP ++G V I
Sbjct: 419 SQLFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEVDIY 478
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 479 EAGKHFMKGQPV 490
>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
Length = 576
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGITLAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Felis catus]
Length = 576
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGITLAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Equus caballus]
Length = 578
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Saimiri boliviensis boliviensis]
Length = 578
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G +
Sbjct: 480 ESGKHFMKGRPV 491
>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
scrofa]
Length = 578
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
Length = 542
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 267/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K +V+AGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+K
Sbjct: 120 IEHGKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQK 179
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R
Sbjct: 180 KNSGKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERA 239
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG M+R+GMTNPP+ILE
Sbjct: 240 KQAFEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILE 297
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF V+ L E VPG+ IAT
Sbjct: 298 HLDEMAKILRHPKVYSFLHIPVQSGSDQVLADMRREYTRADFEHTVNFLSERVPGLTIAT 357
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L
Sbjct: 358 DIICGFPTETEVDFEETMALCQKYKFPSLFINQFFSRPGTPAARMPKVPTQEVKTRTKRL 417
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ F+++ PY G ++++ ITE++ D H VGH K Y QVL+P LG VKIT
Sbjct: 418 SEFFQSYEPYQHKVGLLQKVLITEMSHDKQHYVGHNKFYEQVLIPMEERYLGKMIDVKIT 477
Query: 358 SVGRWSVFGEVI 369
++S+ GE I
Sbjct: 478 EATKFSMKGEPI 489
>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Takifugu rubripes]
Length = 613
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/364 (55%), Positives = 263/364 (72%), Gaps = 9/364 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 116 IKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQK 175
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 176 KDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERT 235
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILE
Sbjct: 236 RQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPYILE 293
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IAT
Sbjct: 294 HLEEMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCVGDFKRVVDFLKERVPGVTIAT 353
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+EDF +T++L+K Y+FP + I+QFYPRPGTPAA+M+++P+ + K+R++EL
Sbjct: 354 DIICGFPGETEEDFQETLDLVKLYQFPSLFINQFYPRPGTPAAKMEQIPAHIKKQRTKEL 413
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +++ +TE + DG + V H K Y QVLVP G V I
Sbjct: 414 SQLFHSYHPYDHKVGERQQVLVTEESFDGQYYVAHNKFYEQVLVPKRAEFKGKMVEVDIY 473
Query: 358 SVGR 361
G+
Sbjct: 474 EAGK 477
>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
[Equus caballus]
Length = 578
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
Length = 562
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/364 (55%), Positives = 259/364 (71%), Gaps = 9/364 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 118 IKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQK 177
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 178 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERA 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYG+DIG +LP LL +V E+P MLR+GMTNPP+ILE
Sbjct: 238 RQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E++++L HP VY+FLHVPVQS SD+VL M REY DFR V D L + VPG+ IAT
Sbjct: 296 HLEEMSKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGITIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD DF +T +L+KEY+FP + I+QFYPRPGTPAA+M +VP+ + K+R++EL
Sbjct: 356 DIICGFPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRTKEL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++F ++ PY G +++ +TE + D + V H K Y QVLVP G V+I
Sbjct: 416 SALFHSYNPYHHKIGETQQVLVTEESFDAQYYVAHNKYYEQVLVPKRSEFKGKMIEVEIF 475
Query: 358 SVGR 361
G+
Sbjct: 476 EAGK 479
>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 520
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 268/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Canis lupus familiaris]
gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
familiaris]
Length = 578
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/423 (49%), Positives = 281/423 (66%), Gaps = 33/423 (7%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPGTPAA+M +VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPAAKMVQVPAQVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEVDIY 479
Query: 358 SVGRWSVFGEVIK------------------------ILNQVDDKIASNRRISSQVRQDK 393
G+ + G+ + N+ ++S R S+ VR+D
Sbjct: 480 ESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTEGFRNRPRSHLSSARHPSAAVRRDS 539
Query: 394 CSS 396
SS
Sbjct: 540 ASS 542
>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 578
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 268/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
Length = 537
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/368 (57%), Positives = 266/368 (72%), Gaps = 9/368 (2%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP- 67
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 123 KKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFLQQKKEAG 182
Query: 68 ------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 KKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVDRAKQAF 242
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ P+G M RIGMTNPP+ILEHL+E
Sbjct: 243 EEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMTNPPYILEHLEE 300
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+ IATDIIC
Sbjct: 301 MSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFERVVNFLRERVPGLTIATDIIC 360
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM KVP+ VKKR++ L+ F
Sbjct: 361 GFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMPKVPTQDVKKRTKRLSEFF 420
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
++++PY V+ + +TEI+ D H VGH K Y QVL+P LG VKI +
Sbjct: 421 QSYSPYDNRIKLVQDVLVTEISHDKKHYVGHNKFYEQVLIPLKEEYLGKMIRVKIVETTK 480
Query: 362 WSVFGEVI 369
+S+ GE I
Sbjct: 481 YSMKGEPI 488
>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
Length = 542
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/374 (55%), Positives = 267/374 (71%), Gaps = 10/374 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + A K +VVAGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKGH VR L K
Sbjct: 113 IENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHTVRFLRTK 172
Query: 65 KLPA--------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
K L+LPK+R+N +EI+ I+ GCL CTYCKTKHARG LGSY + +V R
Sbjct: 173 KNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYPPDEIVAR 232
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+GV E+W++SEDTGAYGRDIG NLP LL +V +P S M+RIGMTNPP+IL
Sbjct: 233 ALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIP--ESCMMRIGMTNPPYIL 290
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
EHL EIA++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E VP + IA
Sbjct: 291 EHLDEIAKILRHPKVYSFLHIPVQSGSDQVLADMKREYTRADFEHVVNYLRERVPDLTIA 350
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDIICGFP ET+E+F +T+ L ++YKFP + I+QF+PRPGTPAARM ++P+ VK R+++
Sbjct: 351 TDIICGFPSETEENFEETLTLCRKYKFPSLFINQFFPRPGTPAARMPRIPTQQVKARTKK 410
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
LT +F ++ PY G++ + +TE+A D +H VGH K Y QVL+P +G LV+I
Sbjct: 411 LTELFYSYEPYENQVGKLCCVLVTEVAHDKLHYVGHNKFYGQVLLPKEEEYMGMMILVRI 470
Query: 357 TSVGRWSVFGEVIK 370
T ++S+ E ++
Sbjct: 471 TEATKFSMKAEYVE 484
>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
[Mus musculus]
Length = 520
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Sarcophilus harrisii]
Length = 577
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKQVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQDTMKLVEDYKFPSLFINQFYPRPGTPAAKMQQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
musculus]
gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Mus musculus]
Length = 578
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Saccoglossus kowalevskii]
Length = 544
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 273/383 (71%), Gaps = 9/383 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L + GVS+VGVQQIDR+VEVVEET KGH VRL +K
Sbjct: 109 IIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLFGQK 168
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L+LPK+R+N +EI+ IN GCL ACTYCKTK+ARG LGSY LV R
Sbjct: 169 KKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELVARA 228
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYG+DIGV + LL +V E+ PDG M+RIGMTNPP+ILE
Sbjct: 229 KQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPYILE 286
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+EI+++L+HP VYSFLHVPVQSGSD+VL M REY + DF+ V + L + VPG+ IAT
Sbjct: 287 HLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKREYCVDDFKHVCNFLKKRVPGVTIAT 346
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ETDEDF++T+ L++EYKFP + I+Q++PRPGTP+A+M +VP+ VKKR+++L
Sbjct: 347 DIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPGTPSAKMTRVPTREVKKRTKKL 406
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F+ + PY G + + +TE + DG V H K Y QVLVP N+LG VKIT
Sbjct: 407 SQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVAHNKFYDQVLVPKEENLLGKMIKVKIT 466
Query: 358 SVGRWSVFGEVIKILNQVDDKIA 380
S G+ + G+++K V IA
Sbjct: 467 STGKHYLIGDILKDEETVTPSIA 489
>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase [Callithrix jacchus]
Length = 579
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+A CVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYHHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G +
Sbjct: 481 ESGKHFMKGRPV 492
>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
Length = 554
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/396 (54%), Positives = 277/396 (69%), Gaps = 12/396 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA---- 68
K +VVAGCVPQG+ L G+SI+GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 140 KHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLLQNKKVQGRRVA 199
Query: 69 ---LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V R R +G
Sbjct: 200 GAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIVERARQSFDEGC 259
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+V
Sbjct: 260 CEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAKV 317
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ IATDIICGFP
Sbjct: 318 LQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPT 377
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T++L K+Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 378 ETEEDFEETMSLCKKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYE 437
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G EG+V + +TEI+ D +H VGH K Y QVL+P N+LGT V+IT ++S+
Sbjct: 438 PYAGREGQVYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRVRITGTSKFSMM 497
Query: 366 GEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQN 401
E IL++ D + +QV S Q+
Sbjct: 498 AE---ILDEESDWTRCDYSKPAQVATSSSQSSRGQH 530
>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
norvegicus]
Length = 578
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 267/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K +V+AGCVPQ L+G+SI+G QQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGGRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
Length = 526
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/374 (55%), Positives = 268/374 (71%), Gaps = 10/374 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I A K +VVAGCVPQ + L G+S+VGVQQIDRV EVVEETLKGH VRLL K
Sbjct: 125 IEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAK 184
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K+ P L LPKVR+N +E++PIN GCL +CTYCKTK AR L SY V+ +V R
Sbjct: 185 KVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPVQEIVERA 244
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ V +GV E+WL+SEDTG YGRDI +LP LL +V E+ P+G M+R+GMTNPP+ILE
Sbjct: 245 QQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMTNPPYILE 302
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A+VL HP VYSFLH+PVQSGSD +L M REY + +F VVD L E VPG+ IAT
Sbjct: 303 HLEEMAKVLAHPRVYSFLHIPVQSGSDTILGEMKREYCVQEFERVVDFLREKVPGITIAT 362
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGET+ DF TV L K+Y+FP + I+QF+PRPGTPAA+M++VP+ VK R++ L
Sbjct: 363 DIICGFPGETETDFQGTVALCKKYEFPSLFINQFFPRPGTPAAKMERVPANEVKTRTKRL 422
Query: 298 TSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
T +F ++ PY G ++ + +TEI+ D H VGH K Y QVL+P N+LG V+I
Sbjct: 423 TDLFHSYEPYKKYTPGTIQTVLVTEISHDRKHYVGHNKFYEQVLLPMHNNLLGKQVEVEI 482
Query: 357 TSVGRWSVFGEVIK 370
T ++S+FG+V++
Sbjct: 483 TGCTKFSMFGKVLQ 496
>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
Length = 561
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/407 (51%), Positives = 277/407 (68%), Gaps = 14/407 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K K +V++GCVPQG+ ++G+S++GV QIDRVVEVVEETLKG+ VRL +K
Sbjct: 127 ITKAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQK 186
Query: 65 KLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K AL LPK+RRN +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R
Sbjct: 187 KEAGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRA 246
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SED GAYG DIGV LP LL +V E PDG+ M+R+GMTNPP+ILE
Sbjct: 247 KQSFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILE 304
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L+HP VYSFLHVPVQSGSDAVL M REY +DF VVD L E VP + +AT
Sbjct: 305 HLEEMAKILKHPRVYSFLHVPVQSGSDAVLGDMKREYCRADFMHVVDFLKERVPNITVAT 364
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET+EDF++T+ L+++Y FP + I+QF+PRPGTPAA+M+++P VKKRS++L
Sbjct: 365 DIICGFPTETEEDFDETMTLVEKYHFPSLFINQFFPRPGTPAAKMERIPPPQVKKRSKQL 424
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F ++ Y G+ + + +TEI+ DG + VGH K Y QVLVP ++G V I
Sbjct: 425 TELFHSYQTYGNQVGQTQTVLVTEISHDGNYFVGHNKHYDQVLVPKETELIGKCVDVVIV 484
Query: 358 SVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESS 404
G+ + E+ D K+ + + K S Q SS
Sbjct: 485 EAGKHFMKAEL-----ATDLKLRRPENVPPPLVHGKVSGFDEQVSSS 526
>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 268/367 (73%), Gaps = 9/367 (2%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 66
S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 135 SNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGR 194
Query: 67 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A
Sbjct: 195 RVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVDRARQSFA 254
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+
Sbjct: 255 EGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPYILEHLEEV 312
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICG
Sbjct: 313 AKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICG 372
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F
Sbjct: 373 FPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFY 432
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITSV ++
Sbjct: 433 SYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKF 492
Query: 363 SVFGEVI 369
S+ GE++
Sbjct: 493 SMVGEIL 499
>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
Length = 553
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 268/367 (73%), Gaps = 9/367 (2%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 66
S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 135 SNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGR 194
Query: 67 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A
Sbjct: 195 RVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVDRARQSFA 254
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+
Sbjct: 255 EGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPYILEHLEEV 312
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICG
Sbjct: 313 AKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICG 372
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F
Sbjct: 373 FPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFY 432
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITSV ++
Sbjct: 433 SYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKF 492
Query: 363 SVFGEVI 369
S+ GE++
Sbjct: 493 SMVGEIL 499
>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Monodelphis domestica]
Length = 579
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPGTPAAKIQQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFMKGQPV 491
>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
Length = 547
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 266/369 (72%), Gaps = 9/369 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ + ++ +SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 118 IRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQK 177
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV RV
Sbjct: 178 KEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERV 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P +G+ MLR+GMTNPP+ILE
Sbjct: 238 RQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEEIP-EGA-MLRLGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E++ +L+HP V+SFLHVP+QS SD+VL M REY +DF +VD L E VPG+ IAT
Sbjct: 296 HLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCCADFTHLVDYLKERVPGITIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPGTPAA M+++P+ V K+R++EL
Sbjct: 356 DIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPGTPAALMQQLPAHVKKQRTKEL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++F ++ PY G +++ +TE + D + V H K Y QVLVP LG V++
Sbjct: 416 SALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEVY 475
Query: 358 SVGRWSVFG 366
G+ + G
Sbjct: 476 ECGKHYMKG 484
>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Metaseiulus occidentalis]
Length = 521
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 264/368 (71%), Gaps = 9/368 (2%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA- 68
S K +VV GCV Q + L+G+SIVG QIDRVVEVVEETLKG+ VRLL K +
Sbjct: 124 SQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVKGK 183
Query: 69 ------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L LPK+R+N VEIL IN GCL CTYCKTK ARG+LGSY +E +V R +
Sbjct: 184 KQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQSFQ 243
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GVKE+W++SEDTGAYGRDIG+ LP LL +V +P LR+GMTNPP+I++HL+++
Sbjct: 244 EGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLEDM 301
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
AE+L HP VYSFLH+PVQSGSD VL M REYT F VVD L + VPG+ IATDIICG
Sbjct: 302 AEILSHPRVYSFLHIPVQSGSDPVLKEMRREYTREQFCQVVDFLRDRVPGITIATDIICG 361
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+EDF+ T++L +Y+FP ++I+QFYPRPGTPAA++K++P+ +VK R+R LT +F+
Sbjct: 362 FPTETEEDFDDTMSLCAKYEFPSLYINQFYPRPGTPAAKLKRIPTEIVKHRTRRLTQLFD 421
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+++PY G+ I +TEIAAD HLVGH K Y Q+LVP +LG++ V+I G+
Sbjct: 422 SYSPYKDRIGKEYDILVTEIAADKTHLVGHNKFYEQILVPQRAGLLGSTVRVRIEEYGKH 481
Query: 363 SVFGEVIK 370
+ G +++
Sbjct: 482 FMRGRILE 489
>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
Length = 560
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/362 (56%), Positives = 263/362 (72%), Gaps = 10/362 (2%)
Query: 14 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP------ 67
P+VVAGCVPQG L+G+SI+GVQQIDRVVEVVEETLKGH VRLL KK
Sbjct: 134 PVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRLLGTKKDAEKKKTG 193
Query: 68 --ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+L LPK+R+N +EI+PIN GCL CTYCKTKHARG LGSY E +V R +GV
Sbjct: 194 GASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEIVARAIQSFQEGV 253
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG MLR+GMTNPP+ILEHL+ IAE+
Sbjct: 254 CEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNPPYILEHLEAIAEI 311
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VY+FLH+PVQSGSD VL+ M REY ++DF VV+ L E VPG+ IATDIICGFP
Sbjct: 312 LNHPRVYAFLHLPVQSGSDCVLTDMKREYCVADFERVVNFLRERVPGISIATDIICGFPT 371
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF+ T+ L +++FP + I+QF+PR GTPA RM++VP+ VK R++ L+ +F+++
Sbjct: 372 ETEQDFDLTMELCSKHRFPSLFINQFFPRVGTPAYRMERVPTKQVKNRTKRLSELFKSYQ 431
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G+ + + +T+I+ D + VGH K YVQVLVP N +G V ITS ++S+
Sbjct: 432 PYDDQVGQRQSVLVTDISHDKNYYVGHNKEYVQVLVPMEPNYMGKMVEVLITSASKFSLM 491
Query: 366 GE 367
E
Sbjct: 492 SE 493
>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
Length = 542
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 272/373 (72%), Gaps = 11/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
+ K ++ KP++V+GCVPQ + L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL+ K
Sbjct: 111 LEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLLNYK 170
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K+ LDLPKVRRN VEI+ IN GCL CTYCKTK ARG+L SY++E ++ R
Sbjct: 171 KVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEIIDRA 230
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-IL 176
+ I++GVKE+WL+SED GAYGRDI LP LL A+ A+LP DG MLR+GMTNPPF I
Sbjct: 231 ESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKLP-DG-VMLRLGMTNPPFHIP 288
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++EI E+L HPCVYSFLH+PVQSGSDAVL M REY + DF VV+ + + VPG+ IA
Sbjct: 289 ISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGITIA 348
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TD+ICGFP ET++DF T++L+++Y+F + I+QFYPRPGTPAA++K++ +AVVK R+R
Sbjct: 349 TDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDRTRR 408
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+T +F ++ PY G ++ ITE + G +LVGH K Y Q+LV + N+LG VK
Sbjct: 409 MTQLFNSYEPYRNRVGLKYQVLITERSFRGDDYLVGHNKFYEQILVANQPNLLGKKVWVK 468
Query: 356 ITSVGRWSVFGEV 368
I S + S+ GE+
Sbjct: 469 IVSCSKHSMVGEL 481
>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
Length = 538
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 266/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +K
Sbjct: 118 IEHGKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQK 177
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R
Sbjct: 178 KDSGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERA 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V ++ PDG M+R+GMTNPP+ILE
Sbjct: 238 KQAFEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A++L+HP VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IAT
Sbjct: 296 HLDEMAKILQHPRVYSFLHIPVQSGSDQVLADMKREYTRAEFEHVVNFLSERVPGLTIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET+ DF +T+ L ++YKFP + I+Q++PRPGTPAARM KVP+ VK R++ L
Sbjct: 356 DIICGFPTETEMDFEETMTLCQKYKFPSLFINQYFPRPGTPAARMLKVPAQKVKARTKRL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ F+++ Y G +++ +TE++ D H VGH K Y QVL+P +G VKI
Sbjct: 416 SEFFQSYELYGHKVGLQQKVLVTEVSHDKQHYVGHNKFYEQVLIPMKQEYMGKMIDVKIK 475
Query: 358 SVGRWSVFGEVI 369
++S+ GE I
Sbjct: 476 EATKFSMKGEPI 487
>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Hydra magnipapillata]
Length = 474
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/372 (53%), Positives = 264/372 (70%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQG + ++G+SIVGVQQIDRVVEVVEETLKGH VRL +K
Sbjct: 30 IKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQIDRVVEVVEETLKGHSVRLFGKK 89
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
KL L+LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY E +V RV
Sbjct: 90 KLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVARV 149
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYG+DIGV LP LL I+ +PP G ++RIGMTNPP+I E
Sbjct: 150 KQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIEVIPPGG--LMRIGMTNPPYIKE 207
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+L E+A++L HP VYSFLH+PVQSGS+ VL M REY + DF+ V+ L + VP + IAT
Sbjct: 208 YLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMKREYRIEDFKNTVNFLKDRVPRLTIAT 267
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET EDF + L++EY+FP + I+QF+PRPGTPAA MK+VP+ VK+R+R +
Sbjct: 268 DIICGFPTETLEDFADSCALVQEYQFPSLFINQFFPRPGTPAANMKRVPTDEVKRRTRVI 327
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F+++ PY G + I ITE A D +H VGH K Y QVL+ + +++G V+I
Sbjct: 328 SDIFQSYLPYENQLGEHQTILITENAKDAVHFVGHNKFYDQVLIKAEPDLMGKLVEVEIY 387
Query: 358 SVGRWSVFGEVI 369
G+ + G ++
Sbjct: 388 ETGKHFIKGRLV 399
>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 265/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ VVKK +
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVVKKAKDKX 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 XXXXXSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIC 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
Length = 507
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/366 (53%), Positives = 271/366 (74%), Gaps = 3/366 (0%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
+ + K K +VVAGCVPQ D L +SI+GV+QI R+VEVVEETLKG+ + LL K
Sbjct: 111 VTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLLSLK 170
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+LP LDLPK+RR+ +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R +
Sbjct: 171 ELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAFDEH 230
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
V EVWLSSEDTGAYG D G+++ LL I + +P +TM+R+GMTNPP++L HLKE+A
Sbjct: 231 VFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKEVAA 290
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
LRHP V+SF+H+PVQSGS+AVL+ M R+YT+ F ++VD L++ VPG+ IATDII GF
Sbjct: 291 FLRHPNVFSFIHIPVQSGSNAVLNTMQRQYTVEQFTSIVDYLLKEVPGLTIATDIIIGFA 350
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ETDED QT++L+K+Y+FP V+IS+F+PRPGTPAARMK + S++VK+RS E ++ F++
Sbjct: 351 SETDEDHKQTMDLLKKYQFPVVNISKFFPRPGTPAARMKHISSSIVKERSSECSAWFKSL 410
Query: 305 TPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
PY G+VE +W+ +E + + +VGHTK YV+VL+P ++ G KIT + R+
Sbjct: 411 NPYQHFLGKVELVWVGSETSRE--FMVGHTKAYVKVLLPMCESLRGKRVAAKITQITRFH 468
Query: 364 VFGEVI 369
V GE++
Sbjct: 469 VVGEIV 474
>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
Length = 539
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 264/368 (71%), Gaps = 9/368 (2%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-- 66
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 124 KKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDLG 183
Query: 67 -----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+L+LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 184 KKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQAF 243
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+GV E+WL+SEDTGAYGRDIG NLP LL ++ ++ PDG M+RIGMTNPP+ILEHL E
Sbjct: 244 EEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLDE 301
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ ++LRH VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDIIC
Sbjct: 302 MTKILRHSKVYSFLHIPVQSGSDHVLADMKREYTCAEFEHVVNFLSERVPGLTIATDIIC 361
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L+ F
Sbjct: 362 GFPTETEMDFEETMTLCQKYKFPSLFINQFFSRPGTPAARMPKVPAQKVKTRTKRLSEFF 421
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
+++ PY G ++++ +TE++ D H VGH K Y QVL+P +G V+I +
Sbjct: 422 QSYEPYGHKVGLIQKVLVTEVSHDKQHYVGHNKFYEQVLIPLKQGYMGKMIDVRIIEATK 481
Query: 362 WSVFGEVI 369
+S+ G+ I
Sbjct: 482 FSMKGDPI 489
>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
Length = 548
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 261/370 (70%), Gaps = 9/370 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL K
Sbjct: 130 IQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLLGTK 189
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R
Sbjct: 190 KEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERA 249
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILE
Sbjct: 250 KQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILE 307
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM IAT
Sbjct: 308 HLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMTIAT 367
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R++ L
Sbjct: 368 DIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRTKRL 427
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F ++ PY G V+ + +TE++ D H VGH K Y QVLVP +G VKI
Sbjct: 428 TDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTVKIV 487
Query: 358 SVGRWSVFGE 367
S ++S+ GE
Sbjct: 488 SATKFSMTGE 497
>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
Length = 545
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 261/370 (70%), Gaps = 9/370 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL K
Sbjct: 127 IQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLLGTK 186
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R
Sbjct: 187 KEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERA 246
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILE
Sbjct: 247 KQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILE 304
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM IAT
Sbjct: 305 HLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMTIAT 364
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R++ L
Sbjct: 365 DIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRTKRL 424
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F ++ PY G V+ + +TE++ D H VGH K Y QVLVP +G VKI
Sbjct: 425 TDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTVKIV 484
Query: 358 SVGRWSVFGE 367
S ++S+ GE
Sbjct: 485 SATKFSMTGE 494
>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
Length = 552
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/365 (56%), Positives = 267/365 (73%), Gaps = 10/365 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL KK
Sbjct: 137 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLLQNKKKVHGRRV 196
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 197 AGAPLSLPKVRKNRLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 256
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A+
Sbjct: 257 CCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAK 314
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 315 VLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFP 374
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET+EDF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++
Sbjct: 375 TETEEDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSY 434
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G V + +TE++ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 435 EPYAERVGEVYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSM 494
Query: 365 FGEVI 369
GE++
Sbjct: 495 VGEIL 499
>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
Length = 540
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/364 (54%), Positives = 262/364 (71%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP----- 67
K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 127 KHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFLQQKKEAGKKIG 186
Query: 68 --ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V R +GV
Sbjct: 187 GASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIVERAIQAFDEGV 246
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG +R+GMTNPP+ILE+L+E++++
Sbjct: 247 CELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPYILEYLEEMSKI 304
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLH+PVQSGSD VL+ M REYT DF VV+ L E VP + IATDIICGFP
Sbjct: 305 LSHPKVYSFLHIPVQSGSDQVLADMKREYTRGDFERVVNFLRERVPELTIATDIICGFPT 364
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM ++P+ +VK R++ L+ F+++
Sbjct: 365 ETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTRIPTQIVKNRTKRLSEFFQSYF 424
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G V+ + +TEI+ D H VGH K Y QVL+P LG VKI ++S+
Sbjct: 425 PYFDRIGLVQEVLVTEISHDRKHYVGHNKSYEQVLLPLKEEYLGKIVRVKIVETTKYSMK 484
Query: 366 GEVI 369
GE I
Sbjct: 485 GEPI 488
>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
Length = 540
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/364 (54%), Positives = 262/364 (71%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 127 KHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFLQQKKEGGKKIG 186
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V R +GV
Sbjct: 187 GASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIVERAIQAFDEGV 246
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTG YGRDIG +LP LL +V ++ PDG +R+GMTNPP+ILEHL+E++++
Sbjct: 247 CELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGC-RIRVGMTNPPYILEHLEEMSKI 304
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E VP + IATDIICGFP
Sbjct: 305 LSHPKVYSFLHIPVQSGSDQVLADMKREYTRADFERVVNFLRERVPELTIATDIICGFPT 364
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM K+P+ +VK R++ L+ F++++
Sbjct: 365 ETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTKIPTQIVKNRTKRLSEFFQSYS 424
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G V+ + +TEI+ D H VGH K Y QVL+P LG VKI ++ +
Sbjct: 425 PYFERIGLVQDVLVTEISHDRKHYVGHNKSYEQVLLPLKKEYLGKIVTVKIVETTKYCMK 484
Query: 366 GEVI 369
GE I
Sbjct: 485 GEPI 488
>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
[Columba livia]
Length = 515
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/372 (52%), Positives = 262/372 (70%), Gaps = 11/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + KK +V+AGCVPQ L+G+SI+GV ++EVVEET+KGH VRLL +K
Sbjct: 121 IKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLLGQK 178
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R
Sbjct: 179 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA 238
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILE
Sbjct: 239 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIP--EGAMLRLGMTNPPYILE 296
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 297 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGITIAT 356
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L+++Y+FP + I+QFYPRPGTPAA++ +VP+AV K+R+++L
Sbjct: 357 DIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYPRPGTPAAKLHQVPAAVKKQRTKDL 416
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V I
Sbjct: 417 SQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEVNIY 476
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 477 EAGKHFMKGQPV 488
>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
Length = 541
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/364 (53%), Positives = 255/364 (70%), Gaps = 9/364 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA---- 68
K +VV+GCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L++KK
Sbjct: 128 KHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFLNKKKEAGKKIG 187
Query: 69 ---LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E ++ R DG+
Sbjct: 188 GAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEIIDRAIQAFKDGI 247
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+WL+SEDTGAYG+DI NLP LL ++ ++ PD M RIGMTNPP+ILEHL+EI ++
Sbjct: 248 KELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPYILEHLEEIGKI 305
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L+HP VYSFLH+PVQSGSD VL M REY+ SDF +VD L E +P + IATD+ICGFP
Sbjct: 306 LKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSDFENIVDFLKEKIPNINIATDVICGFPT 365
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET EDF +T++L ++YKF + I+QF+PR GTPAA+M +VPS +K R++ ++ F+++
Sbjct: 366 ETSEDFEETMSLCQKYKFSTLFINQFFPRQGTPAAKMIQVPSKEIKNRTKLISEFFQSYE 425
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G ++ + +TEIA D H V H Y QVL+P +G VKI S + S+
Sbjct: 426 PYNTKIGEIQEVLVTEIAHDNKHYVAHNSYYEQVLIPMKKEYMGEMLKVKIISASKHSMK 485
Query: 366 GEVI 369
GE
Sbjct: 486 GEAF 489
>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
Length = 538
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/363 (53%), Positives = 250/363 (68%), Gaps = 10/363 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------- 66
LV+AGCVPQG+ L G+S+VGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 130 LVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLFGQKKTEEGRKAGG 189
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+L LPKVR+N +EI+PIN GCL CTYCKTKHARG LGSY E +V R +GV
Sbjct: 190 ASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEIVERATQSFKEGVC 249
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+WL+SEDTG YGRDIG +LP LL +VA +P LR+GMTNPP+ILEHL E+AE++
Sbjct: 250 EIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIP--EGCRLRLGMTNPPYILEHLAEVAEIM 307
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
HP VY FLHVPVQSGSD VL+ M REY+ DF VVD L E VPG+ IATDIICGFP E
Sbjct: 308 HHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAERVPGITIATDIICGFPTE 367
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 306
TD DF T+ L +Y+F + I+QF+PRPGTPAA M +VP VKKR+++L+ F ++ P
Sbjct: 368 TDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQDVKKRTKKLSEFFRSYEP 427
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
Y G ++ + +T+++ D + V H + Y QVLVP +G V+ITS ++S+ G
Sbjct: 428 YGHKVGEIQEVLVTDVSHDKNYYVAHNEFYEQVLVPKEERYMGKLVTVRITSASKFSMMG 487
Query: 367 EVI 369
+
Sbjct: 488 HPV 490
>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
Length = 558
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/529 (47%), Positives = 311/529 (58%), Gaps = 87/529 (16%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 100 MTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRL 159
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V
Sbjct: 160 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIV 219
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAY G P L + ++ N + + +
Sbjct: 220 VSEGVREIWLSSEDTGAYVFAPG---PDLFHNYTSQ------------AMNREYTVSEFR 264
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ + L C VP + ++ E T DF V+ + + +
Sbjct: 265 RVVDTL---CEL----VPGMQIATDIICGFPGE-TDEDFSQTVNLVKQYL---------- 306
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
FP V++ + Y P GTPAARMKKVPS VKKRSRELTSV
Sbjct: 307 --FP---------QVHISQFYPRP-----------GTPAARMKKVPSVEVKKRSRELTSV 344
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
FE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVG
Sbjct: 345 FESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVG 404
Query: 361 RWSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSN 408
RWSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 405 RWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNP 464
Query: 409 EPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALG 468
P+ S G T +E S + R R + +K E+D A
Sbjct: 465 GPERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA-- 507
Query: 469 SKKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 515
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 508 -KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 555
>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
[Rhipicephalus pulchellus]
Length = 554
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL KK
Sbjct: 122 KKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAG 181
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV R + +GV
Sbjct: 182 GAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGV 241
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+E+WL+SEDTGAYGRDIGV LP LL IV +P MLR+GMTNPP+IL+HL+++AE+
Sbjct: 242 REIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPYILDHLEDMAEI 299
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+ IATDIICGFP
Sbjct: 300 LNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPT 359
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++
Sbjct: 360 ETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYV 419
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G + +T+ A D HLVGH K Y Q+L+P +G V+IT G+ +
Sbjct: 420 PYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDVEITGGGKHFMQ 479
Query: 366 GEVIKILNQVD 376
V+ I +D
Sbjct: 480 CNVVGINTALD 490
>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 541
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL KK
Sbjct: 149 KKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAG 208
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV R + +GV
Sbjct: 209 GAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGV 268
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+IL+HL+++AE+
Sbjct: 269 REIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEI 326
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+ IATDIICGFP
Sbjct: 327 LNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPT 386
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++
Sbjct: 387 ETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYV 446
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G + +T+ A D HLVGH K Y Q+L+P +G V+IT G+ +
Sbjct: 447 PYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDVEITGGGKHFMQ 506
Query: 366 GEVIKILNQVD 376
V+ I +D
Sbjct: 507 CNVVGINTALD 517
>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 550
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL KK
Sbjct: 158 KKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAG 217
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV R + +GV
Sbjct: 218 GAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGV 277
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+IL+HL+++AE+
Sbjct: 278 REIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEI 335
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+ IATDIICGFP
Sbjct: 336 LNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPT 395
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++
Sbjct: 396 ETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYV 455
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
PY G + +T+ A D HLVGH K Y Q+L+P +G V+IT G+ +
Sbjct: 456 PYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDVEITGGGKHFMQ 515
Query: 366 GEVIKILNQVD 376
V+ I +D
Sbjct: 516 CNVVGINTALD 526
>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Ornithorhynchus anatinus]
Length = 448
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 267/370 (72%), Gaps = 9/370 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
K + K +V+AGCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60
Query: 67 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 61 NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+ +A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDI
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFPGETDEDF TV L+++Y+FP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKMQQVPAQVKKQRTKELSQ 298
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+F ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 299 LFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPQFMGKMVEVDIYES 358
Query: 360 GRWSVFGEVI 369
G+ + G+ +
Sbjct: 359 GKHFLKGQPV 368
>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Cavia porcellus]
Length = 613
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/353 (54%), Positives = 257/353 (72%), Gaps = 9/353 (2%)
Query: 24 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRR 76
G + L G++ V VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+
Sbjct: 176 GGERQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRK 235
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTG
Sbjct: 236 NPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTG 295
Query: 137 AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLH 196
AYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH
Sbjct: 296 AYGRDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLH 353
Query: 197 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 256
+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV
Sbjct: 354 IPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVK 413
Query: 257 LIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVER 316
L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ +F ++ PY G ++
Sbjct: 414 LVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQIFHSYNPYDHKIGEKQQ 473
Query: 317 IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ +TE + D V H + Y QVLVP + +G V I G+ + G+ +
Sbjct: 474 VLVTEESFDSKFYVAHNRFYEQVLVPKNPSFMGKMVEVDIYESGKHFMKGQPV 526
>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Homo sapiens]
Length = 488
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 258/372 (69%), Gaps = 30/372 (8%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 53 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 112
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 113 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 172
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 173 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 230
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 231 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 290
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R
Sbjct: 291 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGER---- 346
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++ +TE + D V H + Y QVLVP +G V I
Sbjct: 347 -----------------QQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 389
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 390 ESGKHFMKGQPV 401
>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 258/372 (69%), Gaps = 30/372 (8%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 53 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 112
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 113 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 172
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 173 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 230
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 231 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 290
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R
Sbjct: 291 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGER---- 346
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++ +TE + D V H + Y QVLVP +G V I
Sbjct: 347 -----------------QQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 389
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 390 ESGKHFMKGQPV 401
>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
Length = 466
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 253/367 (68%), Gaps = 24/367 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I +S P+V+AGCVPQ QIDRVVEVVEETL+G VRLL K
Sbjct: 109 IRDARSRNIPVVLAGCVPQ---------------TMQIDRVVEVVEETLQGRTVRLLGSK 153
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K+ ALDLPK+RRN +EI+PIN GCL CTYCKTKHARG LGSYT++ +V RV
Sbjct: 154 KVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCKTKHARGDLGSYTIQEIVQRV 213
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ VIA+GV E+WL+SEDTGAYGRDI ++P LL AI+A +P M+R+GMTNPP+I+E
Sbjct: 214 QQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVVP--AGVMVRLGMTNPPYIVE 271
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
H++ IAE LRHP +Y F+H+P+QSG++ +L AM REYT DF V DTL+E VP + IAT
Sbjct: 272 HVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYTREDFCFVADTLLEQVPALTIAT 331
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD DF T +++ Y FP + +QF+PRPGTPAA M++V +VK+R++EL
Sbjct: 332 DIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGTPAAAMERVDPRLVKQRTKEL 391
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ F + Y +R+ +T+ A D +H V H + + QVLVP+ + +G +VKIT
Sbjct: 392 SDYFRGYRVYDDQLDSYQRVLVTDTATDNVHFVAHNRSFDQVLVPANPDFMGKLIVVKIT 451
Query: 358 SVGRWSV 364
+V ++ +
Sbjct: 452 NVNKFFI 458
>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
Length = 542
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/363 (54%), Positives = 249/363 (68%), Gaps = 10/363 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------- 66
+VVAGCVPQG+ L G+SIVGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 130 VVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTDDGKKAGG 189
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV
Sbjct: 190 ASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQSFKEGVC 249
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+WL+SEDTG YGRDIG +LP LL+ VA +P LR+GMTNPP++LEHL +A ++
Sbjct: 250 EIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHLPRVAGIM 307
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
RH VY FLHVPVQSGSD VL+ M REY+ DF VVD L + VPG+ IATDIICGFP E
Sbjct: 308 RHSRVYKFLHVPVQSGSDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDIICGFPTE 367
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 306
T D TV+L ++Y+FP + I+QF+ RPGTPAA M KVP VKKR++EL+ +F ++ P
Sbjct: 368 TAADHELTVSLCRQYRFPSLFINQFFARPGTPAANMTKVPGQEVKKRTKELSELFRSYEP 427
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
Y G + + T+I+ D + VGH + Y QVLVP +G VKITS ++S+ G
Sbjct: 428 YGHKVGETQEVLDTDISHDKKYFVGHNEFYEQVLVPKEERYMGKMLTVKITSASKFSMMG 487
Query: 367 EVI 369
E I
Sbjct: 488 EPI 490
>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Acyrthosiphon pisum]
Length = 522
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/372 (52%), Positives = 265/372 (71%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I+ K + K +VVAGCVPQG + ++ +S++GVQQIDRVVEVVEETLKGH +RLL +K
Sbjct: 115 ISTGKKSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQK 174
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K+ L LPK+R+NK +EI+ I+ GCL CTYCKTKHARG+LGSY + +V R
Sbjct: 175 KINGKKDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRA 234
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+G E+WL+SEDTGAYG DI NLP LL +VA +P M+RIGMTNPP+IL
Sbjct: 235 IESFNEGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILN 292
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+EIA++L HP VY+FLHVPVQSGS+ VL+ M REY++ +F TVV+ L + VPG+ IAT
Sbjct: 293 HLEEIAKILSHPRVYAFLHVPVQSGSNQVLADMKREYSIEEFETVVNFLRQRVPGVSIAT 352
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET+EDF++T+++ ++YKFP + I+QFYPR GTPAARM K+P+ +VK R++ L
Sbjct: 353 DIICGFPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGTPAARMPKIPTDMVKIRTKRL 412
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F ++T Y G ++ I ITE A +GI +GH K Y QVLV ++G V +
Sbjct: 413 TELFHSYTTYDHRIGEIQEILITEEAKNGIEFIGHNKYYEQVLVAKDPELMGKCIEVIVK 472
Query: 358 SVGRWSVFGEVI 369
S + + E++
Sbjct: 473 SAKKHCLIAEMV 484
>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 867
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/344 (55%), Positives = 251/344 (72%), Gaps = 5/344 (1%)
Query: 24 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 83
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 84 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 143
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 144 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 200
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 261 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
+ H VG TK YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Meleagris gallopavo]
Length = 327
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 239/308 (77%), Gaps = 9/308 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
K A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60
Query: 67 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 61 NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDI
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI 238
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+
Sbjct: 239 ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQ 298
Query: 300 VFEAFTPY 307
+F ++ PY
Sbjct: 299 LFHSYNPY 306
>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 867
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/344 (55%), Positives = 251/344 (72%), Gaps = 5/344 (1%)
Query: 24 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 83
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 84 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 143
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 144 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 200
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 261 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
+ H VG TK YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
Length = 555
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/365 (53%), Positives = 254/365 (69%), Gaps = 11/365 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +V+AGCVPQ + + + G+SIVGVQQ+DRV EVVEETLKGH VRLL KK+
Sbjct: 134 KHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHSVRLLQPKKVNGKKVA 193
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
P L LPKVR+N +EI+PIN GCL CTYCKTK AR L SY VE ++ R V +GV
Sbjct: 194 GPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPVEEIIERATQVFQEGV 253
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
E+WL+SEDTG YGRDIG +LP LL +V E+ PD + LR+GMTNPP+ILEHL E+A++
Sbjct: 254 CEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMTNPPYILEHLDEMAKI 311
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VY FLHVPVQSGSD+VL M REY +DF + D L + VPG+ IATDIICGFP
Sbjct: 312 LAHPKVYGFLHVPVQSGSDSVLGEMKREYCRADFERICDFLKQKVPGITIATDIICGFPT 371
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+ DF T++L +Y+FP + I+QFYPRPGTPAA+M+++P VK R++ LT +F +
Sbjct: 372 ETEADFEHTMSLCAKYEFPSLFINQFYPRPGTPAAKMQRIPPDQVKTRTKRLTDLFYGYE 431
Query: 306 PYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
PY G + + +TEI+ D H VGH K Y Q+L+P +LG V+I + ++S
Sbjct: 432 PYAKKYTIGDRQTVLVTEISHDKKHYVGHNKFYEQILLPMDKPLLGKLVEVRIAKITKFS 491
Query: 364 VFGEV 368
+ E+
Sbjct: 492 MIAEI 496
>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
Length = 536
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/372 (52%), Positives = 257/372 (69%), Gaps = 30/372 (8%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + +K +VVAGCVPQG L+G+S++GVQQIDRV EVVEETLKGH VRL +K
Sbjct: 127 IKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLYGQK 186
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
KL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY + +V R
Sbjct: 187 KLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIVARA 246
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+GMTNPP+ILE
Sbjct: 247 KQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPYILE 304
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L E VPG+ IAT
Sbjct: 305 HLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLKERVPGVTIAT 364
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
D+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+ ++ +
Sbjct: 365 DVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPAQLMSE----- 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
++++ +TE + D + VGH K Y QVLVP N++G V+I
Sbjct: 420 ----------------IQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENLMGKMVTVRIV 463
Query: 358 SVGRWSVFGEVI 369
G+ + G+++
Sbjct: 464 ETGKHFLKGQLL 475
>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
[Babesia equi]
Length = 643
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/368 (50%), Positives = 262/368 (71%), Gaps = 4/368 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEVVEETLKGHEV 58
M T I K K K P+VV GCVPQ ++L L+ VS++G QIDR+VEVVE L+G ++
Sbjct: 275 MATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEVVEHALQGRKL 334
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSYT+ES++ RV
Sbjct: 335 VLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSYTLESILDRVE 394
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ ++ V ++WL+SEDTGAYG DIG+++ +LL +I+ LPPD MLR+GM+NPP+I H
Sbjct: 395 SAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLGMSNPPYIKRH 452
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
++EIA++L+H V+ F+H+PVQSGSD VL AMNREY + +F +VD + E VP +ATD
Sbjct: 453 IEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNREYHIDEFLFLVDKIRESVPDCSLATD 512
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
IICGFP ETDE+ +T+ L+K+ K P V+ISQFYPRPGTPAA+MK P+ V K R+RE+T
Sbjct: 513 IICGFPTETDEEHLETIQLLKDLKLPIVNISQFYPRPGTPAAKMKAHPNKVAKSRTREVT 572
Query: 299 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
VF ++ G+ +W ++ H +GHTK Y++V+V ++LG V +
Sbjct: 573 EVFLSYECNSHYLGKTLPVWFSQTDVKRNHTIGHTKNYIKVVVDKDDSLLGKRRDVLVQH 632
Query: 359 VGRWSVFG 366
+W + G
Sbjct: 633 ATKWHLTG 640
>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
Length = 460
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/334 (58%), Positives = 255/334 (76%), Gaps = 9/334 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL KK
Sbjct: 123 KKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLLGSKKDGRRKAG 182
Query: 67 -PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
AL LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY++E LV R + +GV
Sbjct: 183 GAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELVARAKQAFQEGV 242
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+E+WL+SEDTGAYGRDIG LP LL +VA +P MLR+GMTNPP+IL++L+++AE+
Sbjct: 243 REIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPYILDYLEDMAEI 300
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L HP VYSFLHVPVQSGSD VL+ M REYT + FR V+D L + VPG+ IATDIICGFP
Sbjct: 301 LSHPRVYSFLHVPVQSGSDPVLAEMKREYTAAQFRIVIDFLRKAVPGITIATDIICGFPT 360
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF +T+ L++EY+FP + I+QFYPRPGTPAA+MK++P+ VVK+R++ L+ +F+++
Sbjct: 361 ETEEDFEETMALVREYRFPSLFINQFYPRPGTPAAKMKRIPTHVVKERTKRLSELFQSYQ 420
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
Y G G+ + + +TE+A D HLVGH K Y QV
Sbjct: 421 TYDGRVGQRQAVLVTEVAHDKKHLVGHNKFYEQV 454
>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 442
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/310 (60%), Positives = 240/310 (77%), Gaps = 9/310 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPY 307
+ VF ++ PY
Sbjct: 420 SRVFHSYNPY 429
>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase, partial [Pongo abelii]
Length = 577
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/372 (52%), Positives = 260/372 (69%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +VVAGCVPQ L+G+SI+GVQQIDRVVEVVEET+KG+ V L +
Sbjct: 123 IKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHLCKY 182
Query: 65 KLPALDLPKVR-------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L R + V ++ +N CL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
Length = 401
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/275 (66%), Positives = 229/275 (83%), Gaps = 1/275 (0%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M +LIA ++ K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63 MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY +LV RVR
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182
Query: 121 IADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
AD V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+ ++ LRHPCV+S+LHVPVQSGSDAVL +M REYT+++FR VVDTL+ VPGM++ATDI
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTLLAGVPGMELATDI 302
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274
I FPGE+ D +T+ L+++Y+FP HISQFYPR
Sbjct: 303 ITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337
>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
[Mus musculus]
Length = 444
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 241/310 (77%), Gaps = 9/310 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPY 307
+ VF ++ PY
Sbjct: 420 SRVFHSYNPY 429
>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Cricetulus griseus]
Length = 432
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/310 (59%), Positives = 238/310 (76%), Gaps = 9/310 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +VA +P MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIP--EGAMLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +T+ L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPY 307
+ VF ++ PY
Sbjct: 420 SRVFHSYNPY 429
>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
Length = 863
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/342 (55%), Positives = 248/342 (72%), Gaps = 5/342 (1%)
Query: 26 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 85
RDL +L SIVGV IDR+VE VEE LKG+ +RL +K+LP+LDLPK+RRN VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565
Query: 86 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 145
+ GCLG+CTYCKTKHARG LGSY E++ R+ + DGVK++WL+SED+GAYG D +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625
Query: 146 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 202
L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685
Query: 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262
S+ VL AMNREYT F VV+TL++ P M IATDIICGFPGET+ED +T+ +IK++K
Sbjct: 686 SNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFK 745
Query: 263 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 322
FP V+ISQFYPRPGTPAA MK++PS +VK+RSRE+T++FE++T Y M + +W T
Sbjct: 746 FPVVNISQFYPRPGTPAASMKQLPSQIVKRRSREVTALFESYTCYDWMLHTTQMVWFTGT 805
Query: 323 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
+ H VG TK YV+VL P +LGT + IT+V +W V
Sbjct: 806 SEKSHHTVGQTKQYVKVLTPRDDALLGTGCPMYITAVDKWHV 847
>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
alecto]
Length = 621
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/360 (53%), Positives = 253/360 (70%), Gaps = 16/360 (4%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ V D L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVADFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R + L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGERQQVL 419
Query: 298 -------TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
+ + A + G +++ +TE + D V H + Y Q GN L +
Sbjct: 420 VTEESFDSKFYVAHNRFYEQIGERQQVLVTEESFDSKFYVAHNRFYEQEFRNRLGNHLSS 479
>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
parvum]
gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
Length = 543
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/386 (50%), Positives = 264/386 (68%), Gaps = 21/386 (5%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 159 NLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIP 218
Query: 63 RK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 108
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGSY
Sbjct: 219 DKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGSY 278
Query: 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 168
VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RIG
Sbjct: 279 PVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRIG 336
Query: 169 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
MTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD++++
Sbjct: 337 MTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILK 396
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 397 EIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPNG 456
Query: 289 VVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
V K RS E+T+ F++F Y+ + +V ++W E + H VGHTK Y +VLV
Sbjct: 457 VSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNM 516
Query: 344 TGNMLGTSALVKITSVGRWSVFGEVI 369
N+LG A+VK+ +W + G VI
Sbjct: 517 DNNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
Length = 784
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 256/362 (70%), Gaps = 8/362 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPK 73
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LPK
Sbjct: 424 IIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLPK 483
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSS 132
+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+S
Sbjct: 484 IRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLTS 543
Query: 133 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192
ED+GAYG D+ N+ LL I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y
Sbjct: 544 EDSGAYGIDLNTNIVNLLKEIL-DYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNMY 602
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++ D
Sbjct: 603 EFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHL 662
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGME 311
+TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++
Sbjct: 663 ETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFLQ 722
Query: 312 GRVERIWITEIAADGIHLVGHTKGYVQVLV----PSTGNMLGTSALVKITSVGRWSVFGE 367
++++ TEI++ H++GHTK YV+VL+ N+LG A KI S +W V E
Sbjct: 723 NTIQKVLFTEISSKSEHIIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVIAE 782
Query: 368 VI 369
++
Sbjct: 783 LV 784
>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
Length = 447
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/364 (51%), Positives = 263/364 (72%), Gaps = 4/364 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
++ ++ + + K ++VAGCV Q +L+ L+G+SIVGV+QI+ V + VEETLKG+ VR
Sbjct: 37 LENMVREARKLNKFIIVAGCVSQAEPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRF 96
Query: 61 LHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R+K + L LPK+R+NKFVEIL I+ GCL CTYCKTK ARG+L SY ++SL+ R R
Sbjct: 97 LSRRKQNSNLLLPKIRKNKFVEILAISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARN 156
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L
Sbjct: 157 AFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFL 214
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT +DF VVD +I+ VP + IATD
Sbjct: 215 EEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDF 274
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
IC +P ET+ DF +++ L+++Y+FP + I+QFYPR GTPAA +KK+ + ++R+ E++S
Sbjct: 275 ICAYPTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAANLKKIDTIEARRRTAEMSS 334
Query: 300 VFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+F +++ Y G R+ + E+A D H VGH K Y L+PS +LG V+IT
Sbjct: 335 LFRSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITD 394
Query: 359 VGRW 362
V ++
Sbjct: 395 VSKF 398
>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
Length = 543
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/386 (49%), Positives = 264/386 (68%), Gaps = 21/386 (5%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 159 NLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIP 218
Query: 63 RK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 108
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGSY
Sbjct: 219 DKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGSY 278
Query: 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 168
+E+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RIG
Sbjct: 279 PIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRIG 336
Query: 169 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
MTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD++++
Sbjct: 337 MTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILK 396
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 397 EIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPNG 456
Query: 289 VVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
V K RS E+T++F++F Y+ + +V ++W E + H VGHTK Y +VLV
Sbjct: 457 VSKGRSSEITNIFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVNM 516
Query: 344 TGNMLGTSALVKITSVGRWSVFGEVI 369
N+LG A+VK+ +W + G VI
Sbjct: 517 DSNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
Length = 817
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 253/362 (69%), Gaps = 8/362 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPK 73
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LPK
Sbjct: 457 IIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLPK 516
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSS 132
+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+S
Sbjct: 517 IRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIWLTS 576
Query: 133 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192
ED+GAYG D+ N+ LL I+ E D M+RIGMTNPP+IL+H+K+I ++L+H +Y
Sbjct: 577 EDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNMY 635
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++ D
Sbjct: 636 EFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHL 695
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGME 311
+TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++
Sbjct: 696 ETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFLQ 755
Query: 312 GRVERIWITEIAADGIHLVGHTKGYVQV----LVPSTGNMLGTSALVKITSVGRWSVFGE 367
++ + TEI++ H++GHTK YV+V N+LG A KI S +W V E
Sbjct: 756 DTIQNVLFTEISSKSEHIIGHTKQYVKVLLHNNNNENENLLGKFATCKIVSTHKWHVIAE 815
Query: 368 VI 369
++
Sbjct: 816 LV 817
>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 548
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/404 (46%), Positives = 265/404 (65%), Gaps = 36/404 (8%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
L+ + KK +VV GC+PQ R L L+ VS++GV R+VE+VE TL+G+ V ++
Sbjct: 146 LVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEMISM 205
Query: 64 K------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 105
+LP L+LPK+R+N VEI+ ++VGCLG CTYCKTK++RG+L
Sbjct: 206 NSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSRGNL 265
Query: 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 165
GSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL L+ I+ +PPD M+
Sbjct: 266 GSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD--VMI 323
Query: 166 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 225
RIGMTNPP+IL ++++ EVL HP V+ FLH+PVQSGS+ VL+ M R+YT DF +VD
Sbjct: 324 RIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYTREDFCKLVDE 383
Query: 226 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 285
+ + + IATDIICGFPGET+ED TV LIK+YKFP ++IS+FYPRPGTPAA+MK V
Sbjct: 384 ISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRPGTPAAKMKAV 443
Query: 286 PSAVVKKRSRELTSVFEA----------------FTPYLGMEGRVERIWITEIAADGIHL 329
P+ + K+RS E+T++ + + + + R+W E + IH
Sbjct: 444 PNGISKRRSLEITNILHSLKYNEELLEKLRLNMKYNLSTSISDIIVRVWFIENSDISIHT 503
Query: 330 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 373
+GHTK Y +V+V +LG ALVK+ RW GEVI +L+
Sbjct: 504 IGHTKQYTKVIVEKDDKLLGKVALVKLIKPERWHFEGEVISLLD 547
>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Strongylocentrotus purpuratus]
Length = 556
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/374 (54%), Positives = 267/374 (71%), Gaps = 9/374 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K LV+AGCVPQG K ++GVS++GVQQIDRVVEVVEET+KG+ VRL +K
Sbjct: 120 IQKAQQQGKALVLAGCVPQGQPKAKYMQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQK 179
Query: 65 KL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K +LDLPK+RRN VEIL IN GCL CTYCKTKHARG LGSY E LV R
Sbjct: 180 KQGGKKIGGASLDLPKIRRNPLVEILAINTGCLNQCTYCKTKHARGELGSYPPEELVARA 239
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYG DIGV + LL+ +V E+ P+G M+RIGMTNPP+IL+
Sbjct: 240 KQSFDEGVCEIWLTSEDTGAYGIDIGVTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILD 297
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+ IA +LRHP VYSFLH+P+QSGSD+VL M REY +DFR +V+ L + VP + IAT
Sbjct: 298 HLEGIARILRHPRVYSFLHIPIQSGSDSVLMDMKREYCTADFRKIVEFLRKEVPRVTIAT 357
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP E+++DF +T++LI+E+KFP V I+Q++PRPGTPAA+ +VP+ K+R++ L
Sbjct: 358 DIICGFPHESEKDFEETLSLIEEFKFPSVFINQYFPRPGTPAAKWPQVPAQEKKRRTKAL 417
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
T +F+++ Y G + +TE++ D +LV H K Y QVLVP LG V+I
Sbjct: 418 TVLFKSYQTYDDKVGERFDVLVTEVSHDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIE 477
Query: 358 SVGRWSVFGEVIKI 371
SVG+ + G V+ +
Sbjct: 478 SVGKHFLMGRVLDV 491
>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
DAL972]
Length = 535
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/379 (50%), Positives = 259/379 (68%), Gaps = 13/379 (3%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + + KPL+VAGCVPQ K+ VS+VGV+ IDRV VV+E L+G+ VRLL
Sbjct: 108 SMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVRLLG 167
Query: 62 ---------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY VE
Sbjct: 168 ETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYPVEV 227
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTN 171
+V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+GM+N
Sbjct: 228 IVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVGMSN 285
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
PP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++ VP
Sbjct: 286 PPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRAAVP 345
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
+ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+ V K
Sbjct: 346 KATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTDVAK 405
Query: 292 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
R+ ELT+ F ++ + M G V + + E A D HLVGHTK YVQVLV +G S
Sbjct: 406 HRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARMGES 465
Query: 352 ALVKITSVGRWSVFGEVIK 370
+V ITS ++SV G V++
Sbjct: 466 VVVVITSATKYSVMGRVLR 484
>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 578
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 262/378 (69%), Gaps = 13/378 (3%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-- 61
++ + ++ KPLVVAGCVPQ D K+ VS++GV+ IDRV VV ETL+G+ VRL+
Sbjct: 146 MMNRVRATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVRLIGS 205
Query: 62 --------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 113
KLPALDLPKVRRNK++EI+PI+VGCL CTYCKTK+ARG L SY V +
Sbjct: 206 DKEQLRVGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYPVSEI 265
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNP 172
VGRVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ AEL +GS MLR+GM+NP
Sbjct: 266 VGRVREVVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVGMSNP 323
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
P++L H+ + A +LRHP VY F+H+PVQSGS+ +L M REYT+ +F +D + VP
Sbjct: 324 PYLLRHVDDFASILRHPNVYEFVHIPVQSGSNRILKTMLREYTVEEFCKCMDAIRTAVPR 383
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ +ATDIIC FPGE + ++ +T+ L + KF ++I++FYPR TPAA MK++P+ + K+
Sbjct: 384 VTLATDIICAFPGEGEAEWRETMRLCEVAKFGVINITRFYPRRNTPAAAMKQIPTDIAKQ 443
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
R+ ELT+ F ++ Y M G V ++ + E A D HLVGHTK YVQVLV + +G
Sbjct: 444 RTTELTNFFNSYRTYDAMVGDVCQVTLLETAHDKHHLVGHTKNYVQVLVDPSEARMGERV 503
Query: 353 LVKITSVGRWSVFGEVIK 370
V I S ++SV G V++
Sbjct: 504 TVVIVSATKYSVTGRVLR 521
>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
Length = 437
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 263/368 (71%), Gaps = 5/368 (1%)
Query: 2 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++VRLL
Sbjct: 65 NNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRLL 124
Query: 62 HRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV + R
Sbjct: 125 TRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARAA 184
Query: 121 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG M+R+GMTNPP+IL+HL
Sbjct: 185 FHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDHL 242
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+EIAE+L +P VY+FLH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD+
Sbjct: 243 EEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIENVPNIYIATDM 302
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++
Sbjct: 303 ILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSE 362
Query: 300 VFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+F ++T + G + + +TEIAAD IH VGH K Y Q+LVP +G V+ITS
Sbjct: 363 LFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHNKSYEQILVPLEHCKMGEWIEVRITS 422
Query: 359 VGRWSVFG 366
V ++S+
Sbjct: 423 VTKFSMIS 430
>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
Length = 1477
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/355 (51%), Positives = 245/355 (69%), Gaps = 12/355 (3%)
Query: 48 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 100
VVEETLKG+ V+LL KK L LPKVRRN +EI+ IN GCL +CTYCKTKH
Sbjct: 15 VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74
Query: 101 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 160
ARG L SY ++ +V R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P
Sbjct: 75 ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133
Query: 161 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 220
M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFC 192
Query: 221 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280
VVDTL VP IATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA
Sbjct: 193 KVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAA 252
Query: 281 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL 340
+ +++P V+K+R+++L++VF+++ P+ G EG + ITE+A D + LVGHTK Y Q+L
Sbjct: 253 KWEQIPRQVIKERTKKLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQIL 312
Query: 341 VPST-GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKC 394
V ++G V + + S+ G ++ + V IA N +I + ++ K
Sbjct: 313 VKGNPDELMGKRVDVVVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAKS 365
>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 535
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 258/379 (68%), Gaps = 13/379 (3%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + + KPL+VAGCVPQ K+ VS+VGV+ ID V VV+E L+G+ VRLL
Sbjct: 108 SMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVRLLG 167
Query: 62 ---------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY VE
Sbjct: 168 ETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYPVEV 227
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTN 171
+V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+GM+N
Sbjct: 228 IVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVGMSN 285
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
PP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++ VP
Sbjct: 286 PPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRAAVP 345
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
+ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+ V K
Sbjct: 346 KATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTDVAK 405
Query: 292 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
R+ ELT+ F ++ + M G V + + E A D HLVGHTK YVQVLV +G S
Sbjct: 406 HRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARMGES 465
Query: 352 ALVKITSVGRWSVFGEVIK 370
+V ITS ++SV G V++
Sbjct: 466 VVVVITSATKYSVMGRVLR 484
>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
Length = 416
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/296 (61%), Positives = 230/296 (77%), Gaps = 9/296 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IAT
Sbjct: 300 HLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 293
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V KK+
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKKK 415
>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
putorius furo]
Length = 411
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/292 (61%), Positives = 226/292 (77%), Gaps = 9/292 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +AT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289
DIICGFPGETD+DF +TV L++EY+FP + I+QFYPRPGTPAA+M +VP+ V
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPGTPAAKMAQVPAQV 411
>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 256/378 (67%), Gaps = 11/378 (2%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 106 SMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLIG 165
Query: 62 ---------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +ES
Sbjct: 166 VNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIES 225
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+NP
Sbjct: 226 IVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEIQ-GTEVMMRVGMSNP 284
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
P++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 285 PYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHECVHRIRSVVPN 344
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K+
Sbjct: 345 VTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAKR 404
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
R+ ELT F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 405 RTSELTEFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGETV 464
Query: 353 LVKITSVGRWSVFGEVIK 370
V I S ++SV G V++
Sbjct: 465 TVVIMSTTKYSVVGRVLR 482
>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 257/378 (67%), Gaps = 11/378 (2%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 106 SMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLIG 165
Query: 62 ---------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +ES
Sbjct: 166 VNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIES 225
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+NP
Sbjct: 226 IVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEIQ-GTEVMMRVGMSNP 284
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
P++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 285 PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVPN 344
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K+
Sbjct: 345 VTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAKR 404
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
R+ ELT+ F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 405 RTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGETV 464
Query: 353 LVKITSVGRWSVFGEVIK 370
V I S ++SV G V++
Sbjct: 465 TVVIMSTTKYSVVGRVLR 482
>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 860
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/363 (47%), Positives = 254/363 (69%), Gaps = 8/363 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 73
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ V+ L KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 132
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + + R+ V + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618
Query: 133 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192
EDTGAYG DI ++ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
F+H+PVQSGS+ VL MNREYT+ DF +V+ L + VP + I+TDIICGFP E+++D
Sbjct: 678 EFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYVPNITISTDIICGFPYESEQDHQ 737
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 311
TV+LIK ++FP ++ISQFYPR GT A MKK+ + +VKKRSR++T F ++ Y ++
Sbjct: 738 NTVHLIKNFQFPILNISQFYPRRGTVAYNMKKINTKIVKKRSRDVTEAFLSYEHNYKFLQ 797
Query: 312 GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKITSVGRWSVFGE 367
++++ TEI++ H++GHTK YV+VL+P+ N +LG A KI S +W V E
Sbjct: 798 NTIQQVLFTEISSKSEHIIGHTKQYVKVLLPNENNKNIELLGNFATCKILSTHKWHVVAE 857
Query: 368 VIK 370
+ K
Sbjct: 858 LNK 860
>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/378 (48%), Positives = 256/378 (67%), Gaps = 11/378 (2%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 106 SMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLIG 165
Query: 62 ---------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +ES
Sbjct: 166 VNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIES 225
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+NP
Sbjct: 226 IVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEIQ-GTEVMMRVGMSNP 284
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
P++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 285 PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVPN 344
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K+
Sbjct: 345 VTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAKR 404
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
R+ ELT F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 405 RTSELTEFFNSYRTLDQMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGETV 464
Query: 353 LVKITSVGRWSVFGEVIK 370
V I S ++SV G V++
Sbjct: 465 TVVIMSTTKYSVVGRVLR 482
>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 318
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/207 (85%), Positives = 195/207 (94%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 110 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 169
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 170 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 229
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 230 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 289
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVL 207
EIA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 290 EIAAVLCHPCVYSFLHVPVQSGSDSVL 316
>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
anophagefferens]
Length = 446
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/370 (52%), Positives = 248/370 (67%), Gaps = 13/370 (3%)
Query: 13 KPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
K +VV+GC+PQG R L EL+G S VG++QI RV E V L+G L
Sbjct: 77 KAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAVAAALRGETFHALGS 136
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
LP+L+LPKVR N VEI+P++ GCLGAC YCKT+HARG LGSY + +V RV +AD
Sbjct: 137 GPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYALADIVARVDGALAD 196
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
GV EVWLSSEDTGAYG D+G +L LL A++ L MLR+GMTNPP++L+ L+ +
Sbjct: 197 GVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGMTNPPYVLDQLEVLG 256
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSA--MNREYTLSDFRTVVDTLIELVP-GMQIATDII 240
L H VY+FLHVPVQSGSDAVL+ MNREYT++DFR VVD L V G+ + TD+I
Sbjct: 257 RCLNHAQVYAFLHVPVQSGSDAVLAKDRMNREYTVADFRAVVDGLAARVDGGLSLMTDVI 316
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGETD+DF+ T L+++Y F ++ISQFY RPGTPAA MK+V +A VK RSR L+++
Sbjct: 317 CGFPGETDDDFDATYALVEDYAFGLINISQFYARPGTPAASMKRVHTATVKDRSRRLSAL 376
Query: 301 FEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ F PY G+ G V E+A G LV HTK Y +VLVP +++G V+I +
Sbjct: 377 TQTFRPYDGLVGTVVACAAHAEVADGGARLVCHTKTYAKVLVPFDRSLVGARFEVRIGAA 436
Query: 360 GRWSVFGEVI 369
RW V G V+
Sbjct: 437 HRWHVDGVVL 446
>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
Length = 659
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/409 (49%), Positives = 262/409 (64%), Gaps = 54/409 (13%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL----------- 61
K LVVAGCVPQ L+GVSI+GVQQIDRVVEVVEETL+G+ VR L
Sbjct: 168 KRLVVAGCVPQSHPAADYLKGVSIIGVQQIDRVVEVVEETLQGNTVRFLDKKWAVSGDGD 227
Query: 62 ---HRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
R++L LDLPK+RRN +EIL ++ GCL ACTYCKTKHARG L SY +E L+ R
Sbjct: 228 SHSERRRLGGARLDLPKIRRNPLIEILAVSTGCLNACTYCKTKHARGVLASYPIEELLER 287
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIG------------------VNLPILLNAIVAELP 158
+ ADGVKE+WL+SED GAYGRD+ + L LL+ +V L
Sbjct: 288 AKQAFADGVKELWLTSEDLGAYGRDLDRTTSVYSCPSMAARFPQCLTLADLLSGLV-RLI 346
Query: 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 218
P+G MLR+GMTNPP+ILE L+EIA+VL HP VY+FLHVPVQSGSDAVL M REYT+ +
Sbjct: 347 PEGC-MLRLGMTNPPYILEQLREIADVLSHPRVYAFLHVPVQSGSDAVLDCMKREYTVDE 405
Query: 219 FRTVV--------------DTLIELVPG---MQIATDIICGFPGETDEDFNQTVNLIKEY 261
F VV D + V G + +ATDIICGFP ET+ DF +TV L++ +
Sbjct: 406 FSHVVTYLQDHIPPPPLPPDATDDAVNGSGTLTVATDIICGFPNETEADFAETVKLVERF 465
Query: 262 KFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320
+FP ++I+QF+ RPGTPAA M +K +A VKKR+R L +F A+ PY G +G + R+ +T
Sbjct: 466 RFPVLYINQFFARPGTPAASMIRKATTAEVKKRTRRLHDLFRAYKPYEGRQGSLVRVLVT 525
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
E + DG VGHTK Y QVLVP + G LV+IT ++ + +++
Sbjct: 526 ETSHDGRFWVGHTKAYEQVLVPKIPEVYGRIILVRITECDKFFMRSDIV 574
>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 750
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/371 (48%), Positives = 256/371 (69%), Gaps = 8/371 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HR 63
IAK ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L H
Sbjct: 380 IAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKHS 439
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-A 122
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V
Sbjct: 440 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCNE 499
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+ +KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 500 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHIKDI 558
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 559 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 618
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F
Sbjct: 619 FPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 678
Query: 303 AFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKIT 357
++T Y +EG +R+ TE++ L+GHTK YV+VL+ + N +L A KI
Sbjct: 679 SYTNNYKFLEGTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQNRNNENSHLLSHFANCKIV 738
Query: 358 SVGRWSVFGEV 368
S +W V E+
Sbjct: 739 SAHKWHVVAEL 749
>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 530
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/362 (50%), Positives = 254/362 (70%), Gaps = 11/362 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA---- 68
K LV+AGCV Q K +G+SIVG+ QIDRV+EVVEETL+G VRLL +K A
Sbjct: 120 KKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGAGGAP 179
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
L +PK+RRN+ +EI+PIN GCL CTYCKTKHARG L SY + +V RVR V+A+GV E+
Sbjct: 180 LAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEGVVEI 239
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
WL+SEDTG YGRD + LL I+ E+ PDG MLR+GMTNPP+ILEHL+E+A++L H
Sbjct: 240 WLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAKILNH 297
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P VY+FLH+P+Q+ SDAVL+ M REY +F +VD L E VP + IATDIICGFPGET+
Sbjct: 298 PRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLRERVPNVTIATDIICGFPGETE 357
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 308
EDF +T++L ++YKFP + I+Q + P +++ A VKKR++ L+ +F+++ PY
Sbjct: 358 EDFQETMDLCEKYKFPSLFINQAHLLPA-----WRELIPATVKKRTKRLSELFQSYLPYE 412
Query: 309 GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 368
G+ +R+ +T+++ DG + V H K + QVLVP ++G V IT+ G+ + G V
Sbjct: 413 HKLGQRQRVLVTDVSTDGNYFVAHNKSFDQVLVPRRPEIMGKMITVDITATGKHFLMGRV 472
Query: 369 IK 370
++
Sbjct: 473 VE 474
>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
Length = 560
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 263/380 (69%), Gaps = 17/380 (4%)
Query: 2 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV--- 58
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++V
Sbjct: 103 NNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPT 162
Query: 59 ---------RLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 108
RLL R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY
Sbjct: 163 ILRTSRLHVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSY 222
Query: 109 TVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 167
+E LV + R D GVKE+WL+SED GA+GRDI + LP LLNA+V +P DGS M+R+
Sbjct: 223 PLEDLVEQARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALVKVIP-DGS-MMRL 280
Query: 168 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
GMTNPP+IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+ M REY+ F + D +I
Sbjct: 281 GMTNPPYILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMI 340
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 287
+ VP + IATD+I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ +
Sbjct: 341 KHVPNIYIATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDT 400
Query: 288 AVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+KR+ ++ +F ++T + G + + +TE+AAD +H VGH K Y Q+LVP
Sbjct: 401 IEARKRTAAMSELFRSYTRFTEDRIGEIHNVLVTEVAADKLHGVGHNKSYEQILVPLEHC 460
Query: 347 MLGTSALVKITSVGRWSVFG 366
+G V+ITSV ++S+
Sbjct: 461 KMGEWIEVRITSVTKFSMIS 480
>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
Length = 442
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/304 (60%), Positives = 230/304 (75%), Gaps = 9/304 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V AGCVPQG+ ++ +SI+G+ IDRVVEVVEETLKGH VRLL +K
Sbjct: 114 IEKGRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQK 173
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K L LPKVR+N ++EI+PI+ GCL CTYCKTKHARG LGSY VE +V R
Sbjct: 174 KENGKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERA 233
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ ++GV E+WL+SEDTGAYG+DIG +LP LL +V E+ PD M R+GMTNPP+ILE
Sbjct: 234 KQAFSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILE 291
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L H VYSFLHVPVQSGSDAVLS M REYT+SDF+ VVD L VPG+ IAT
Sbjct: 292 HLEEMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDFLRLRVPGITIAT 351
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFP ET++DF +T++L + YKFP + I+QFYPRPGTPAA+M KVP VK+R+++L
Sbjct: 352 DIICGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPGTPAAKMVKVPMHEVKQRTKKL 411
Query: 298 TSVF 301
+F
Sbjct: 412 ADLF 415
>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
Y486]
Length = 514
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/383 (47%), Positives = 260/383 (67%), Gaps = 17/383 (4%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + + KPLVVAGCVPQ K+ VSI+GV+ IDRV VV E L+G+ VRL+
Sbjct: 86 SMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVCYVVHEALQGNCVRLIG 145
Query: 62 ---HRKK------------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 106
H++ LPALDLPKVR N+++EI+PI+VGCL CTYCKTK ARG L
Sbjct: 146 LSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCLNNCTYCKTKQARGDLR 205
Query: 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 166
SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++ LL A+ AEL MLR
Sbjct: 206 SYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLLRAVAAELS-GKDVMLR 264
Query: 167 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 226
+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+AM REYT+ +F V+ +
Sbjct: 265 VGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILNAMLREYTVEEFCLCVEAI 324
Query: 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 286
VP + ++TDIIC FPGE + ++ +T++L + F ++I++FYPR TPAA MK++P
Sbjct: 325 RSAVPRVTLSTDIICAFPGEGESEWRETMDLCRRINFEIINITRFYPRRNTPAAAMKQIP 384
Query: 287 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + K R+ ELT+ F ++ Y M G V RI + E A D HLVGHTK YVQVLV
Sbjct: 385 TNIAKSRTTELTNFFNSYRTYDSMVGEVHRITLLETAHDKHHLVGHTKNYVQVLVDPASA 444
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
++G + V I+S ++SV G V+
Sbjct: 445 LMGETVTVVISSASKYSVVGRVL 467
>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
Length = 432
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 254/354 (71%), Gaps = 5/354 (1%)
Query: 17 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 75
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + AL LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 134
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R +GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 194
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
LH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLTDMKREYSRRHFEQIADYMIEHVPNIYIATDMILAFPTETLEDFEES 238
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 313
++L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T + G
Sbjct: 239 MDLVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRFTEDRIGE 298
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 367
V + +TEIAAD +H VGH K Y Q+LVP +G V++TSV ++S+ +
Sbjct: 299 VHNVLVTEIAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTSVTKFSMISK 352
>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
Length = 425
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 254/358 (70%), Gaps = 5/358 (1%)
Query: 17 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 75
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 134
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 194
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 313
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ + I
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISKPASI 356
>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
Length = 478
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 249/351 (70%), Gaps = 4/351 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
++ + + + K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR
Sbjct: 99 LENTVKEARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRF 158
Query: 61 L-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L RK L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R
Sbjct: 159 LSQRKPNSNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARN 218
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L
Sbjct: 219 AFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFL 276
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+EI+E+L HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD
Sbjct: 277 EEISEILNHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDF 336
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
IC +P ET DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E+++
Sbjct: 337 ICAYPTETKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMST 396
Query: 300 VFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
+F +++ Y G R+ + E+A D H VGH K Y L+ S +LG
Sbjct: 397 LFRSYSRYDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
Length = 799
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/372 (48%), Positives = 259/372 (69%), Gaps = 13/372 (3%)
Query: 10 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 63
SAK P ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L +
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548
Query: 124 -GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDI 607
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 667
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F
Sbjct: 668 FPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 727
Query: 303 AFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKIT 357
++T Y +EG +R+ TE++ L+GHTK YV+VL+ + N +L A KI
Sbjct: 728 SYTNNYKFLEGTTQRVLFTEVSTKSEDLIGHTKQYVKVLLQNRNNENAHLLSHFANCKIV 787
Query: 358 SVGRWSVFGEVI 369
S +W V E++
Sbjct: 788 SAHKWHVVAELV 799
>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
Length = 465
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 180/351 (51%), Positives = 249/351 (70%), Gaps = 4/351 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
++ + + + K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR
Sbjct: 99 LENTVKEARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRF 158
Query: 61 L-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L RK L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R
Sbjct: 159 LSQRKPNSNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARN 218
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L
Sbjct: 219 AFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFL 276
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+EI+E+L HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD
Sbjct: 277 EEISEILNHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDF 336
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
IC +P ET DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E+++
Sbjct: 337 ICAYPTETKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMST 396
Query: 300 VFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
+F +++ Y G R+ + E+A D H VGH K Y L+ S +LG
Sbjct: 397 LFRSYSRYDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
Length = 768
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 253/361 (70%), Gaps = 8/361 (2%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPK 73
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L + KK+ +L+LPK
Sbjct: 408 IIVCGCVPQAEKDMEIFENVSLVGVSNIDKIVDVVENVINGYNVRYLKQGKKMTSLNLPK 467
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSS 132
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++ +KE+WL+S
Sbjct: 468 IRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSEENIKEIWLTS 527
Query: 133 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192
EDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 528 EDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMY 586
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICGFP E + D
Sbjct: 587 EFIHIPVQSGSNRVLKNMNREYQIEDFIYLVENLRKDVPNITIATDIICGFPYEMENDHV 646
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 311
+TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++T Y +E
Sbjct: 647 ETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFLSYTNNYKFLE 706
Query: 312 GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKITSVGRWSVFGE 367
G +R+ TE++ L+GHTK YV+VL+ + N +L A KI S +W V E
Sbjct: 707 GTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQNRNNENAHLLSHFANCKIVSAHKWHVVAE 766
Query: 368 V 368
+
Sbjct: 767 L 767
>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
Length = 554
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 244/345 (70%), Gaps = 4/345 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
+ TL+ ++ P VV GCVPQ R + L S+VG QIDR+VEVVEETL+G+ V L
Sbjct: 179 LATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEETLRGNRVSL 238
Query: 61 LHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L KKLP L +LPK+RRN VEI+ +N GCLG C+YCKTK+ARG LGSY+ E ++ RVRT
Sbjct: 239 LQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSKEDIIARVRT 298
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+A+GV+++WL+SED GAYG DIG N+ LL IV EL +M+R+GMTNPP+IL+H
Sbjct: 299 ALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMTNPPYILQHA 358
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+E+A++L HP V+ F+H+P+QSGS+ VL M REYT+ DF +V L VP + +ATD+
Sbjct: 359 EEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRLVGILRARVPNLTVATDV 418
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
ICGFP E++E+ +T+ LIK ++FP ++ISQFY RPGT AAR++ ++P V+K+RS E+T
Sbjct: 419 ICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARIRPRLPGKVIKERSTEVT 478
Query: 299 SVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 341
++F ++ T L G V +W E+ VGHTK Y + ++
Sbjct: 479 NLFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVGHTKRYTKAVL 523
>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
Length = 530
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/378 (48%), Positives = 259/378 (68%), Gaps = 11/378 (2%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 61
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 106 SMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLIG 165
Query: 62 ---HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
H K LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +ES
Sbjct: 166 MNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIES 225
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+NP
Sbjct: 226 IVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEVQ-GTEVMVRVGMSNP 284
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
P++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REY L +F V + +VP
Sbjct: 285 PYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYNLEEFYECVHRIRSVVPN 344
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ +ATDIIC FPGE + ++ +T+ + + +FP ++I++FYPR TPAA MK++P+ V K+
Sbjct: 345 VTLATDIICAFPGEGEAEWRETMEVCEHVRFPVLNITRFYPRRNTPAASMKQIPTDVAKQ 404
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
R+ ELT F ++ + M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 405 RTSELTEFFNSYRTFDHMVGEVHSVTLLETAHDKHHLVGHTKAYVQVLVDPQEARLGETV 464
Query: 353 LVKITSVGRWSVFGEVIK 370
V ITS ++SV G V++
Sbjct: 465 TVVITSTTKYSVVGRVLR 482
>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
Length = 535
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/362 (51%), Positives = 255/362 (70%), Gaps = 11/362 (3%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPK 73
+VVAGCV Q + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL RK+ L LPK
Sbjct: 117 IVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLLSRKRPEQKLSLPK 176
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 133
+RRN +E+L ++ GCL CTYCKTK ARG L SY E LV + ++G +E+WL+SE
Sbjct: 177 MRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRAFSEGCREIWLTSE 236
Query: 134 DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 193
D GA+GRD G+ LP LL A+V ++ P+G M+R+GMTNPP+IL+ L EIAE+L HP VYS
Sbjct: 237 DLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLDEIAEILNHPRVYS 294
Query: 194 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 253
FLH+PVQSGSDAVL MNREY+ +DF VVD +++ VP + IATD IC FP ET EDF +
Sbjct: 295 FLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQNVPNVYIATDFICAFPTETIEDFEE 354
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY----LG 309
++ L+ Y+FP V I+QFYPR GTPAAR+KK+ + ++R+ ++S+F ++T Y LG
Sbjct: 355 SMQLVHRYRFPSVFINQFYPRKGTPAARLKKITTTEARRRTAAMSSLFRSYTRYGNDRLG 414
Query: 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG-NMLGTSALVKITSVGRWSVFGEV 368
ME V + E A D +H V H K Y L+P ++LG V++T VG++ + E+
Sbjct: 415 MEYDV---LVCEWATDKVHFVAHNKCYEHFLLPCDDVSILGQVVRVRVTGVGKFHMNAEM 471
Query: 369 IK 370
++
Sbjct: 472 VR 473
>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
Length = 686
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 191/331 (57%), Positives = 224/331 (67%), Gaps = 33/331 (9%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M TLI K K+A PLV + G + + Q+ V ETLKGHE RL
Sbjct: 25 MGTLIRKGKAASIPLVDSWMRSSGFKRSR--------SCQRHRSAVNTAGETLKGHEARL 76
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV++ V R++TV
Sbjct: 77 LRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTPVQRLKTV 136
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++G RDIG N+P LL A+VA LP N P + HL
Sbjct: 137 VSEG---------------RDIGANIPALLRALVAVLP-------HRQKYNAPNL--HLT 172
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
HPCVYSFLHV VQSG D+VL M REYT S+FR +VDTL LVP + IATDII
Sbjct: 173 ASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDII 232
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET EDF++ + LI+E FPQVHISQFYPRPGTPAA MK+VP+ VKKRSR LTS+
Sbjct: 233 CGFPGETSEDFDRIMELIRECTFPQVHISQFYPRPGTPAALMKRVPTLEVKKRSRSLTSL 292
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVG 331
FE+FTPY GME + R+W+T AADGIHLVG
Sbjct: 293 FESFTPYAGME-KTYRVWVTNTAADGIHLVG 322
>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
Length = 810
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/397 (49%), Positives = 251/397 (63%), Gaps = 42/397 (10%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP----A 68
K +V +GCVPQ L+GVS++GV QIDR+VEVVEETL+ H A
Sbjct: 163 KRVVASGCVPQSRPGADYLKGVSVIGVHQIDRIVEVVEETLQESSSSATHSSSSSLAGIA 222
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
LDLPK+RRN +EIL I+ GCL ACTYCKTK ARG L SY +E L+ R + +GVKE+
Sbjct: 223 LDLPKIRRNPLIEILAISTGCLNACTYCKTKQARGILASYPIEQLLDRAKQAFKEGVKEL 282
Query: 129 WLSSEDTGAYGRDIG------------------VNLPILLNAIVAELPPDGSTMLRIGMT 170
WL+SED GAYGRD+ + L LL +V +P MLR+GMT
Sbjct: 283 WLTSEDLGAYGRDLDRTTSSLICPGLSEKWSHHITLADLLAGLVPIIP--AGCMLRLGMT 340
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE-- 228
NPP+IL+ L EIAEVL HP VYSFLH+PVQSGSDAVL AM REYT+ +F +VVD L++
Sbjct: 341 NPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLDAMKREYTMEEFSSVVDYLMQNV 400
Query: 229 ----LVPG-----------MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273
L PG + IATD+ICGFP ET+ DFN+TV LI++Y+FP +HI+QF+P
Sbjct: 401 KPPNLPPGAAHDTVNGSGTLTIATDVICGFPTETNNDFNETVELIEKYQFPVLHINQFFP 460
Query: 274 RPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 332
RPGTPAA M +K S+ VK R+R L +F ++ Y G G R+ ITE + DG VGH
Sbjct: 461 RPGTPAANMSRKANSSEVKSRTRRLHDLFRSYRTYDGRVGCEVRVLITEPSFDGKFWVGH 520
Query: 333 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
TK Y Q+L+P ++ G LV+I ++ + G +I
Sbjct: 521 TKAYEQILLPKDPDVYGRIVLVRIIECDKFFMRGIII 557
>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
Length = 354
Score = 360 bits (924), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 169/322 (52%), Positives = 232/322 (72%), Gaps = 9/322 (2%)
Query: 55 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 107
GH VRL +KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGS
Sbjct: 1 GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 167
Y + +V R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+
Sbjct: 61 YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118
Query: 168 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLK 178
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 287
E VPG+ IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+
Sbjct: 179 ERVPGVTIATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPA 238
Query: 288 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+VK+R+++++ +F ++ PY ++++ +TE + D + VGH K Y QVLVP N+
Sbjct: 239 QLVKQRTKKISELFHSYRPYDHKMSEIQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENL 298
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
+G V+I G+ + G+++
Sbjct: 299 MGKMVTVRIVETGKHFLKGQLL 320
>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
Length = 493
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 228/317 (71%), Gaps = 16/317 (5%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 159 NLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLIP 218
Query: 63 RK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 108
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGSY
Sbjct: 219 DKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGSY 278
Query: 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 168
VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RIG
Sbjct: 279 PVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRIG 336
Query: 169 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
MTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD++++
Sbjct: 337 MTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSILK 396
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 397 EIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPNG 456
Query: 289 VVKKRSRELTSVFEAFT 305
V K RS E+T+ F++F
Sbjct: 457 VSKSRSSEITNTFQSFN 473
>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
Shintoku]
Length = 873
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/372 (47%), Positives = 252/372 (67%), Gaps = 6/372 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV 58
M T+I + P+VV+GCVPQ ++ +S++G+ QIDR+VEVVE +L+G+++
Sbjct: 505 MVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDRIVEVVENSLQGNKM 564
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG LGSY +E ++ RV
Sbjct: 565 VLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGVLGSYDIEIILDRVE 624
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ + +GVKE+WL+SED GAYG DIG NL LL +IV LP TMLR+GM+NPPFI ++
Sbjct: 625 SCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTMLRLGMSNPPFIKKY 682
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ EI E+L H VY F+H+PVQS S++VL MNREY + +F +V T+ VP IATD
Sbjct: 683 IDEICEILLHDNVYEFIHIPVQSFSNSVLKKMNREYKVEEFLHLVKTIRTKVPNCMIATD 742
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
+I GFP E E T N+++E K P V+ISQ+Y R GT A +MK++PS V K R+R++T
Sbjct: 743 VISGFPTEKPEHHMATRNMLEELKLPVVNISQYYARKGTIACKMKQIPSKVRKGRTRDIT 802
Query: 299 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV-LVPSTGNMLGTSALVKIT 357
+VF ++ +G+V +++ +I L+GH K YV+V LV T GT VK+
Sbjct: 803 NVFMSYETNSKYKGQVIKVYFNQINC-HYQLIGHDKHYVKVMLVHLTDKYFGTVQYVKVV 861
Query: 358 SVGRWSVFGEVI 369
+W + G ++
Sbjct: 862 KTTKWHLEGIIV 873
>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
Length = 438
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 178/375 (47%), Positives = 242/375 (64%), Gaps = 6/375 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
+D + KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+
Sbjct: 67 IDVVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQS 126
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+
Sbjct: 127 YLERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQ 185
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ +GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++
Sbjct: 186 SVDEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYF 243
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
EI +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDI
Sbjct: 244 NEIVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRIAVPGISIATDI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T
Sbjct: 304 ICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTE 363
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKIT 357
+F+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 364 LFDSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKII 423
Query: 358 SVGRWSVFGEVIKIL 372
G++ V E+I+IL
Sbjct: 424 EAGKFFVRSEIIEIL 438
>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
Length = 438
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/369 (47%), Positives = 241/369 (65%), Gaps = 6/369 (1%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 65
KC+ A PLV+AGCVPQ + + + SIVGV Q+ ++ E VE+ L R
Sbjct: 73 KCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSYLERGA 132
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ I +GV
Sbjct: 133 LVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHSIDEGV 191
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+ L+ ED GAYG DI P +L I + +G MLRIGM NPP+I+++ KEI +
Sbjct: 192 KEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFKEIVNI 249
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIICGFP
Sbjct: 250 LLRPCCFKFLHIPIQSGSSSVLEAMKRKYTREEFDDVCNRLRISVPGISIATDIICGFPT 309
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ETDED +T+ I++++FP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F+++
Sbjct: 310 ETDEDHKKTLECIQKHQFPIVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTEIFDSYL 369
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSVGRWS 363
PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI G++
Sbjct: 370 PYTNLIGKEYIVWINEMAHDGINYAGHNISFVQVIVPYYEKENLLGKSVRVKIIEAGKFF 429
Query: 364 VFGEVIKIL 372
V E+I+IL
Sbjct: 430 VRSEIIEIL 438
>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
KU27]
Length = 438
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 177/375 (47%), Positives = 242/375 (64%), Gaps = 6/375 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
+D + KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+
Sbjct: 67 IDVVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQS 126
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+
Sbjct: 127 YLERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQ 185
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ +GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++
Sbjct: 186 SVDEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYF 243
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
EI +L PC + FLH+P+QSGS ++L AM R+YT +F V + L VPG+ IATDI
Sbjct: 244 NEIVNILLRPCCFKFLHIPIQSGSTSILDAMKRKYTREEFDDVCNRLRIAVPGISIATDI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T
Sbjct: 304 ICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTE 363
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKIT 357
+F+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 364 LFDSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKII 423
Query: 358 SVGRWSVFGEVIKIL 372
G++ V E+I+IL
Sbjct: 424 EAGKFFVRSEIIEIL 438
>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
nuttalli P19]
Length = 438
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/375 (47%), Positives = 242/375 (64%), Gaps = 6/375 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
+D + KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+
Sbjct: 67 IDVVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQS 126
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+
Sbjct: 127 YLERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQ 185
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ +GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++
Sbjct: 186 SVDEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYF 243
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
EI +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDI
Sbjct: 244 DEIVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRISVPGISIATDI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T
Sbjct: 304 ICGFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTE 363
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKIT 357
+F+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 364 LFDSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKII 423
Query: 358 SVGRWSVFGEVIKIL 372
G++ V E+I+IL
Sbjct: 424 EAGKFFVRSEIIEIL 438
>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Papio anubis]
Length = 629
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/289 (55%), Positives = 215/289 (74%), Gaps = 2/289 (0%)
Query: 81 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 140
EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318
Query: 141 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 200
DIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
S SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++E
Sbjct: 377 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQETVKLVEE 436
Query: 261 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320
YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY G +++ +T
Sbjct: 437 YKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYNHKIGERQQVLVT 496
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
E + D V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 497 EESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 545
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 54
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 172
>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
Length = 750
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 247/362 (68%), Gaps = 9/362 (2%)
Query: 13 KPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K ++V GC+PQ + + +S++G+ QI+++V V+E L G+ V +L +KKLP+LD
Sbjct: 393 KKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVMLEKKKLPSLD 452
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV + I++GVKE+WL
Sbjct: 453 LPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESCISEGVKEIWL 512
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+SED GAYG D+G N+ LL++I+A LP D MLR+GM NPP+I +++ E+ E+LRH
Sbjct: 513 TSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYISEVCEILRHEN 570
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
V+ F+H+PVQS SD+VL MNREY L DF +V + E VP IATDIICGFP ET ED
Sbjct: 571 VFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKEKVPNCTIATDIICGFPTETHED 630
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGM 310
TV+ +++ K ++ISQ+Y R GT ++ MK++ + V K RSRE+T+VF ++
Sbjct: 631 HQATVDTLRDLKLSVINISQYYSRKGTVSSGMKELDNNVKKNRSREVTNVFMSYENNSKF 690
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN---MLGTSALVKITSVGRWSVFGE 367
+ + I D LVG+ K Y++++V + + LGT+ VK+ + +W + E
Sbjct: 691 LNEQFKAYFNHINGD--QLVGYNKYYIKLIVKNLKDPESYLGTTQHVKVINTHKWHLECE 748
Query: 368 VI 369
++
Sbjct: 749 IL 750
>gi|388502314|gb|AFK39223.1| unknown [Medicago truncatula]
Length = 280
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 210/283 (74%), Gaps = 8/283 (2%)
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
MQIATDIICGFPGETDEDF QTVNLIKEYKF QVHISQFYPRPGTPAARMKKVPS VVK+
Sbjct: 1 MQIATDIICGFPGETDEDFEQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKR 60
Query: 293 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
RSRELT+VFE+FTPY GMEG+VERIWIT+IA DG+HLVGHTKGY+QVLV + +MLG+SA
Sbjct: 61 RSRELTNVFESFTPYSGMEGKVERIWITDIATDGVHLVGHTKGYIQVLVIAPDDMLGSSA 120
Query: 353 LVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDP 412
L KITSVGRWSVFGEVI+ +N D A N+++ + QD S C +Q ++ S EP+
Sbjct: 121 LAKITSVGRWSVFGEVIETINPASDNKALNKQVPT---QDMSSLCCNQTKTCEISEEPES 177
Query: 413 SACGL--ECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSK 470
ACG CC ++ ++ N++N+ GW+LRKRKN K VE+++A GS
Sbjct: 178 CACGNVDSCCSQSTLVKTDNSRDTVVLPQNQNNKNLFGWILRKRKNLHKRVESELASGSD 237
Query: 471 KKQEWMGGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 513
KQE +M +W VD+ALLGG+ +S L I+ALL+ + F L
Sbjct: 238 LKQE---RSMRKWDFVDKALLGGISISILTIIALLVCLRFSVL 277
>gi|388491006|gb|AFK33569.1| unknown [Lotus japonicus]
Length = 180
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 155/176 (88%), Positives = 168/176 (95%)
Query: 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 223
MLRIGMTNPPF LEHLKEIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVV
Sbjct: 1 MLRIGMTNPPFTLEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVV 60
Query: 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283
DTL ELVPGMQIATDIICGFPGETDEDF+QTVNLIKEYKF QVHISQFYPRPGTPAARMK
Sbjct: 61 DTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPGTPAARMK 120
Query: 284 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
KVPS VVK+RSRELT+VFEAFTPY GMEG+VERIWIT++A+DG+HLVGHTKG V +
Sbjct: 121 KVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDVASDGVHLVGHTKGVVLI 176
>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
Length = 750
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 237/366 (64%), Gaps = 22/366 (6%)
Query: 13 KPLVVAGCVPQGSRD-------------LKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
K ++V GC+PQ + L +L VG+ QID+++ V+E + G+ V
Sbjct: 382 KRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNS--VGIMQIDKIIYVIENVMNGNRVV 439
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +E+++ RV +
Sbjct: 440 LLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIEAILDRVES 499
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+++GVKE+WL+SED GAYG D+G N+ LL +I+ LP + MLR+GM NPP+I +++
Sbjct: 500 SVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGMCNPPYIKKYI 557
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
EI E+L H V+ F+H+PVQS SDAVL MNREY L DF +V + +P IATDI
Sbjct: 558 NEICEILSHDNVFEFIHIPVQSCSDAVLEKMNREYLLEDFLYIVSVIKAKLPNCTIATDI 617
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFP ET++D TV +++ K ++ISQ+Y R GT ++ MK++ + V K RSRE+T+
Sbjct: 618 ICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRKGTISSSMKELDNNVKKNRSREITN 677
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN---MLGTSALVKI 356
VF ++ V +++ + D LVG+ K Y++V+V N LGT VK+
Sbjct: 678 VFMSYENNSKFINSVFKVFFNHMNGD--QLVGYNKYYIKVIVKGLENPNTFLGTVQNVKV 735
Query: 357 TSVGRW 362
+ +W
Sbjct: 736 VNTHKW 741
>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
Length = 353
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/272 (62%), Positives = 195/272 (71%), Gaps = 24/272 (8%)
Query: 40 QQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 99
Q+ ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTK
Sbjct: 13 QRHRSAANTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTK 72
Query: 100 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159
HARGHLGSYTV++LV R++TV+++G RDIG N+P LL A+VA LP
Sbjct: 73 HARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLRALVAALPH 117
Query: 160 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 219
N P + HL HPCVYSFLHV VQSG D+VL M REYT S+F
Sbjct: 118 RQKY-------NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEF 168
Query: 220 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279
R +VDTL LVP + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPGTPA
Sbjct: 169 RKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPA 228
Query: 280 ARMKKVPSAVVKKRSRELTSVFEAFTPYLGME 311
A MK+VP+ VKKRSR LTS+FE+FTPY GME
Sbjct: 229 ALMKRVPTLEVKKRSRSLTSLFESFTPYAGME 260
>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
Length = 316
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/295 (53%), Positives = 198/295 (67%), Gaps = 26/295 (8%)
Query: 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 134
RRN V I P N CL CTYCKTKHARG LGSY E +V R R +GV E+WL+SED
Sbjct: 22 RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 194
TGAYG+DIGV LP LL +V E+ P+G MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79 TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
LHVPVQ+ SD+VL M REY LSDF+ VVD L E VP + IATD+ICGFP ET EDF +T
Sbjct: 137 LHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEET 196
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 314
+ L++EYKFP + I+QF+PRPGTPAA+M++VP V G +
Sbjct: 197 LQLVEEYKFPSLFINQFFPRPGTPAAKMRRVPPQEV---------------------GEI 235
Query: 315 ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ + +TE + D V H K Y QVLVP +LG V+ITS G+ + G ++
Sbjct: 236 QNVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLMGRLL 290
>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
Length = 441
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 234/374 (62%), Gaps = 6/374 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
++ + KC+ P+V+AGCVPQ + K + SIVGV Q+ ++ + VE ++G
Sbjct: 69 IEQIKKKCEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGAT 128
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R L +D + + + ++I+ GC ACTYCKTKHARG L SY + ++ R++
Sbjct: 129 YLERGPLVDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKK 187
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
I +GVKE+ L+ ED GAYG DIG P +L + + +G M+RIGM NPP+I+++
Sbjct: 188 SINEGVKELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYF 245
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
EI EV + CVY F+H+P+QSGS VL AM R+YT +F V L + +P + IATDI
Sbjct: 246 DEIVEVFKRKCVYKFIHIPIQSGSTQVLEAMKRKYTREEFDDVCARLRKCIPEITIATDI 305
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFP ETDED T++ +K ++FP V+ISQ RPGTPAA+MK V S V K+RSRE+T
Sbjct: 306 ICGFPTETDEDHKMTLDCLKVHQFPIVNISQMCIRPGTPAAQMKPVNSKVKKQRSREVTE 365
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN--MLGTSALVKIT 357
F+++ PY M G+ ++WI E+A D + H +VQV++ N + G SA+VKI
Sbjct: 366 YFDSYFPYKNMVGKTCQVWINEMAHDKQNYAAHDISFVQVILAPQKNVDLFGKSAIVKIV 425
Query: 358 SVGRWSVFGEVIKI 371
G++ V GE + +
Sbjct: 426 EAGKFFVKGEFVSL 439
>gi|212274679|ref|NP_001130719.1| uncharacterized protein LOC100191823 [Zea mays]
gi|194689936|gb|ACF79052.1| unknown [Zea mays]
Length = 308
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 211/315 (66%), Gaps = 19/315 (6%)
Query: 210 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269
MNREYT+ +FR VVDTL ELVPGMQIATDIICGFPGETDEDF++TVNL+KEY+FPQVHIS
Sbjct: 1 MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60
Query: 270 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 329
QFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VE+IWITEIA+DG+HL
Sbjct: 61 QFYPRPGTPAARMKKVPSNEVKKRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHL 120
Query: 330 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK-ILNQVDDKIASN-----R 383
VGHTKGY+QVLV + +MLGTSA KITSVGRWSVFG V++ + ++ I ++
Sbjct: 121 VGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVVEGSVAVIEAPIQTSAELQEE 180
Query: 384 RISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDRFAEDINS 443
+ +QV + C + S + ACSNE P CG + C L Q D
Sbjct: 181 HVQNQVEEAGCCATDSCG-ACACSNEAQP--CGPDRCGD--ALRAPQTCGGDVVT---TR 232
Query: 444 QNVIGWLLRKRK--NQLKGVENDVALGSKKKQEWMGGNMGEWGV-VDRALLGGMLVSFLI 500
Q + L +R KG ++ A + K+Q + GV +D L G+ SF +
Sbjct: 233 QEALQPTLVRRSVDGTTKGSDSTAAHSAGKEQRVE--VVTRRGVDIDTVLWCGLAASFAV 290
Query: 501 ILALLIHVGFRTLST 515
+ALL + + LST
Sbjct: 291 TVALLALLTSKILST 305
>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 284
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 198/285 (69%), Gaps = 7/285 (2%)
Query: 91 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 149
G CTYC TK ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ L
Sbjct: 1 GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60
Query: 150 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 209
L I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL
Sbjct: 61 LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119
Query: 210 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269
MNREY + DF +VD L + VP M IATDIICGFP E++ D +TVNL+K YKFP ++IS
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179
Query: 270 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIH 328
QFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++ ++++ TEI++ H
Sbjct: 180 QFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYEFLQDTIQKVLFTEISSKSEH 239
Query: 329 LVGHTKGYVQVLVP----STGNMLGTSALVKITSVGRWSVFGEVI 369
++GHTK YV+VL+ N+LG A KI S +W VF E++
Sbjct: 240 IIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVFAELV 284
>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
Length = 465
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 230/371 (61%), Gaps = 5/371 (1%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
TL + K K LVVAGC+ + L E + +GV+QI ++ E V+ +
Sbjct: 93 TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152
Query: 62 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+G+ E+WL+SEDTGAYG D +L LL+ I +E+ D + M++IGMTNPPF+ L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEVE-DSNVMVKIGMTNPPFLKPMLE 271
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
++ +L H YS+LH+PVQSGSDAVL MNR+Y +SDFR + L + VPG+ ++TDII
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQHVPGITLSTDII 331
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFP E+ ED +T+ L+++ VH S++YPRP T AAR +++P VVK R +EL+
Sbjct: 332 VGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAARYEQLPIDVVKSRVKELSDW 391
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL-VPSTGNMLGTSALVKITSV 359
F+A PY + G+ +W++ G + HTK Y +VL V S G VK
Sbjct: 392 FKALHPYDELVGKEMDVWVSN-EKTGDYRCCHTKNYTKVLIVDSKEFAAGDVVRVKCVEA 450
Query: 360 GRWSVFGEVIK 370
R+ V +++
Sbjct: 451 QRFHVKARIVE 461
>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 423
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 183/247 (74%), Gaps = 2/247 (0%)
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61 EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICG
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG 178
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L+ VF
Sbjct: 179 FPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDLSRVFH 238
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++ PY G +++ +TE + D V H + Y QVLVP +G V I G+
Sbjct: 239 SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESGKH 298
Query: 363 SVFGEVI 369
+ G+ +
Sbjct: 299 FLKGQPV 305
>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
Length = 613
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/342 (48%), Positives = 202/342 (59%), Gaps = 45/342 (13%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M+TLI K K+A PLV + G + + Q+ ETLKGHE L
Sbjct: 25 METLIRKGKAASIPLVDSWMRSSGFKRSRS--------CQRHRSAANTAGETLKGHEAWL 76
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R LP+LDLPKV +NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV++LV R++TV
Sbjct: 77 LRRDALPSLDLPKVCKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTV 136
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+++G RDIG N+P LL A+VA LP N P + HL
Sbjct: 137 VSEG---------------RDIGANIPALLCALVAALP-------HRQKYNAPNL--HLT 172
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
HPCVYSFLHV VQSG D+VL M REYT S+FR +VDTL LVP + IATD+I
Sbjct: 173 ASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLVPEIHIATDVI 232
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
CGFPGET EDF++ + LI+EY FPQVHISQFYPRP + + + S
Sbjct: 233 CGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPVFILSISLDRNTGGSNETGSNARS- 291
Query: 301 FEAFTPYLGME-----------GRVERIWITEIAADGIHLVG 331
E P+L G+ R+W+T AADGIHLVG
Sbjct: 292 -EEMKPFLDKSVRIVHSLRRNGGKTYRVWVTNTAADGIHLVG 332
>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
Length = 351
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 174/231 (75%), Gaps = 9/231 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKE 350
>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Ailuropoda melanoleuca]
Length = 429
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/275 (53%), Positives = 190/275 (69%), Gaps = 18/275 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+I E
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYISE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL----IELVPGM 233
HL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E P
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKENQTEGNPNS 359
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 268
Q+ G PG F +T ++++E + Q+ +
Sbjct: 360 QVR-----GVPGSLLTMFWKTQSVVEEPEQSQLKV 389
>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 155/202 (76%), Gaps = 2/202 (0%)
Query: 89 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 148
CL CTYCKTKHARG LGSY E +V R + +GV E+WL+SEDTGAYG+DIGV LP
Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60
Query: 149 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 208
LL +V +P G +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 61 LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118
Query: 209 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 268
M REY DF VV+ L + VP + IATD+ICGFP ET++DF +T++L+K+YKFP + I
Sbjct: 119 DMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFI 178
Query: 269 SQFYPRPGTPAARMKKVPSAVV 290
+QFYPRPGTPAARMK++P+ V
Sbjct: 179 NQFYPRPGTPAARMKRLPTEEV 200
>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
Length = 240
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 168/220 (76%), Gaps = 3/220 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
++ + + + K ++VAGCV Q +L+ L+G+SIVGV+QI+ V + VEETLKG+ VR
Sbjct: 21 LENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVKQIECVTQAVEETLKGNCVRF 80
Query: 61 LHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R+K + L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L SY ++SL+ R R
Sbjct: 81 LSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTKSARGNLVSYPLDSLLERARN 140
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L
Sbjct: 141 AFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFL 198
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 219
+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF
Sbjct: 199 EEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDF 238
>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
Length = 422
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 217/375 (57%), Gaps = 17/375 (4%)
Query: 2 DTLIAKCKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEV 58
+ +I + KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TL+G +
Sbjct: 55 NKMIHRIKSLKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKE 114
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+
Sbjct: 115 IALEDSDLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVK 174
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
T I +G KE+WL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++
Sbjct: 175 TEIDEGCKEIWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRI 231
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+++ E + V+ FLH+PVQSGSD VL M R +T FR +V E P I+TD
Sbjct: 232 KEKLIESYENDKVFKFLHIPVQSGSDKVLQDMKRGHTAGTFREIVKKAKERFPNFTISTD 291
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II GFP ET EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+E+
Sbjct: 292 IIVGFPSETREDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKEIF 351
Query: 299 SVFEAFT-----PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
+ ++G +G V E DGI G Y V VP + +G S
Sbjct: 352 EQINKISLDNNKKWIGWKGNV---LFDEKTEDGIK--GRNFAYKPVFVPEQVD-IGQSHT 405
Query: 354 VKITSVGRWSVFGEV 368
V+I + S+ G++
Sbjct: 406 VEIIDATQNSLLGKI 420
>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
Length = 425
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 211/365 (57%), Gaps = 17/365 (4%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++ L L
Sbjct: 69 KKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKRNLDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G KE+W
Sbjct: 129 DFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIW 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E +
Sbjct: 189 LSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIEAYQDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+Y FLH+PVQSG + +L M R YT+ +F +V + P + + TDII GFPGE DE
Sbjct: 246 KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LI+ + +V++S++ PRPGT AA+ K++P +VK+RSR L + +E
Sbjct: 306 AFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQISYEIN 365
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
Y+G +VE + E + V T Y V++P GN G + +I + +
Sbjct: 366 QKYIGK--KVEVLIHGEGKKGNVDAV--TMNYKHVILP-FGNS-GEFRIAEIKNATSTYL 419
Query: 365 FGEVI 369
GEV+
Sbjct: 420 LGEVM 424
>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 432
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++ L L
Sbjct: 76 KKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKRNLDKL 135
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G KE+W
Sbjct: 136 DFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQGYKEIW 195
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ + +
Sbjct: 196 LSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELIDAYKDE 252
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFPGE++E
Sbjct: 253 KVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFPGESEE 312
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L + +E
Sbjct: 313 AFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQISYEIN 372
Query: 305 TPYLGMEGRV 314
Y+G + +V
Sbjct: 373 RKYIGKKVKV 382
>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 425
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++ L L
Sbjct: 69 KKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKRNLDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G KE+W
Sbjct: 129 DFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQGYKEIW 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ + +
Sbjct: 189 LSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELIDAYKDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFPGE++E
Sbjct: 246 KVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFPGESEE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L + +E
Sbjct: 306 AFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQISYEIN 365
Query: 305 TPYLGMEGRV 314
Y+G + +V
Sbjct: 366 RKYIGKKVKV 375
>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 422
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 216/377 (57%), Gaps = 21/377 (5%)
Query: 2 DTLIAKCKSAK-KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGH 56
+ +I + KS K KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G
Sbjct: 55 NKMIHRIKSLKSKPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGT 112
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ L L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +
Sbjct: 113 KFVALEDTDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQ 172
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
V T ++DG KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++
Sbjct: 173 VETEVSDGCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMP 229
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E+ E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+
Sbjct: 230 RIKNELIESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERYTDFTIS 289
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII GFP ET EDF +TV L+ E V++S++ RPGT AA +++ ++ VK+RSR
Sbjct: 290 TDIIVGFPSETREDFEKTVELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRI 349
Query: 297 LTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
+ + E ++G +G+V E GI G Y V V +G +
Sbjct: 350 IFNQINKISLENNQKWIGWKGKV---LFDEKTDQGIK--GRNFAYKSVFVKDEIK-IGQT 403
Query: 352 ALVKITSVGRWSVFGEV 368
VKIT S+ GE+
Sbjct: 404 QTVKITDASIHSIIGEI 420
>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
Length = 425
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 207/365 (56%), Gaps = 17/365 (4%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D + +++GV+ IDR+V+ VE L+G + V ++ L L
Sbjct: 69 KKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKRNLDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ ILPI GCL CTYC T+ ARG L SY+ E +V V+ I G KE+W
Sbjct: 129 DFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQGYKEIW 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E +
Sbjct: 189 LSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIEAYKDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
VY FLH+PVQSG + +L M R YT+ +F +V+ P + + TDII GFPGE++E
Sbjct: 246 KVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F +++ LIK K +V++S++ PRPGT AA+ K++P VVK+RSR + V +E
Sbjct: 306 AFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRIMHRVRLQISYEIN 365
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
Y+G +V+ + E + V T Y +++P G A K+ +
Sbjct: 366 QRYVGR--KVDILVHGEGKKGNVDAV--TMNYKHIIIPRGEK--GEFARAKVNGATSTYL 419
Query: 365 FGEVI 369
GE++
Sbjct: 420 LGEIV 424
>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
Length = 188
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 2/184 (1%)
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV E
Sbjct: 7 SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILEHL+E+A ++
Sbjct: 67 IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
HP VY FLHVPVQSGSD VLS M REY+ DF VVD L E VPG+ IATDIICGFP ET
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLSDMKREYSRKDFEHVVDFLRERVPGITIATDIICGFPTET 184
Query: 248 DEDF 251
+ DF
Sbjct: 185 EADF 188
>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
Length = 424
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 217/378 (57%), Gaps = 21/378 (5%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M I + A K ++V GC+P + + + +I+GV+ I+R+ E +E +G ++
Sbjct: 55 MRKRIKELLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVD 114
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ ++ + L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V V+
Sbjct: 115 VEQRGIDKLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEA 174
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A G KE+ LSSEDTG YG DIG NL LL+ + + +G +R+GM NP +++ L
Sbjct: 175 LAKGYKEIQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLD 231
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ + + +Y FLH+PVQSG + +L M R YT+ DF T+V + P + + TDII
Sbjct: 232 ELIDAYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAFRKEFPELNLNTDII 291
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV----KKRSRE 296
GFPGE++E F TV LIK K ++++S+F PRPGT AARM P +V K+RSR
Sbjct: 292 VGFPGESEEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARM---PDQIVGWRAKERSRY 348
Query: 297 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
L + +E Y+G E V +T + G T Y ++++P +G
Sbjct: 349 LHRLRLAISYEINQKYVGRELLV----LTHGEGKKGGVEGRTMNYKEIILPEAP--IGEF 402
Query: 352 ALVKITSVGRWSVFGEVI 369
VK+T + GE+I
Sbjct: 403 VKVKVTKATATYLMGELI 420
>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
chinensis]
Length = 494
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 141/166 (84%), Gaps = 2/166 (1%)
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
GV E+WL+SEDTGAYGRD+G +LP LL +VA +P +G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP-EGA-MLRLGMTNPPYILEHLEEMA 290
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 350
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V
Sbjct: 351 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQV 396
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 87 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+ CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153
>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
Length = 405
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 17/365 (4%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE L+G + V ++ L L
Sbjct: 49 KKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKL 108
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+W
Sbjct: 109 DLPRLSPRGVHFIVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIW 168
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL LL+ I + +G +R+GM NP +++ L E+ E +
Sbjct: 169 LSAEDTGCYGFDIGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDE 225
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+Y FLH+PVQSG + +L M R YT+ +F +V+ P + + TDII GFPGE++E
Sbjct: 226 KIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEE 285
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LIK + +V++S++ PRPGT AA+ K++P +VK+RSR + + +E
Sbjct: 286 AFQKSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRIMHRIRLQISYEIN 345
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
Y+G +V+ + E I V T Y +++P G A K+ +
Sbjct: 346 QRYIGK--KVDVLVHGEGKKGNIDAV--TMNYKHIILPHGEK--GEFATAKVKGATSTYL 399
Query: 365 FGEVI 369
GE++
Sbjct: 400 LGEIV 404
>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
Length = 422
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 215/375 (57%), Gaps = 17/375 (4%)
Query: 2 DTLIAKCKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEV 58
+ ++ + KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TLKG +
Sbjct: 55 NKMVHRIKSLKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKK 114
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+
Sbjct: 115 IALEDTDLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVK 174
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
T I +G KEVWL+S D G YG DIG +LP L+NA V+E+P + M+R+GM NP ++
Sbjct: 175 TEINEGCKEVWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRI 231
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+++ E + V+ FLH+PVQSGSD VL M R +T FR +V E P I+TD
Sbjct: 232 KEKLIESYDNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKARERFPDFTISTD 291
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II GFP ET EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+ +
Sbjct: 292 IIVGFPSETKEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKRIF 351
Query: 299 S-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
E ++G +G V E +GI G Y V VP + +G
Sbjct: 352 EQINKISLENNKKWIGWKGDV---LFDEQTDEGIK--GRNFAYKPVFVPEQVD-IGQLHA 405
Query: 354 VKITSVGRWSVFGEV 368
V+I + S+ G++
Sbjct: 406 VEIIDATQNSLLGKI 420
>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 422
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 215/377 (57%), Gaps = 21/377 (5%)
Query: 2 DTLIAKCKSAK-KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGH 56
+ +I + KS K KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G
Sbjct: 55 NKMIHRIKSLKSKPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGT 112
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ L L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +
Sbjct: 113 KFVALEDTDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQ 172
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
V T +++G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++
Sbjct: 173 VETEVSEGCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMP 229
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E+ E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+
Sbjct: 230 RIKNELIESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERFADFTIS 289
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII GFP ET EDF +T L+ E V++S++ RPGT AA +++ ++ VK+RSR
Sbjct: 290 TDIIVGFPSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRI 349
Query: 297 LTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
+ + E ++G +G+V E GI G Y V V +G +
Sbjct: 350 IFNQINKISLENNQKWIGWKGKV---LFDEKTDQGIK--GRNFAYKSVFVKDEIK-IGQT 403
Query: 352 ALVKITSVGRWSVFGEV 368
VKIT S+ GE+
Sbjct: 404 QTVKITDASIHSIIGEI 420
>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
Length = 248
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 148/194 (76%)
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
LEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ I
Sbjct: 1 LEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTI 60
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 295
ATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+++++P+ +VKKR++
Sbjct: 61 ATDIICGFPTETEQDFEETMTLCEKYQFPILFINQFFPRPGTPAAKIERIPANLVKKRTK 120
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
LT +F ++ PY EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT V+
Sbjct: 121 RLTDLFYSYEPYAEREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVR 180
Query: 356 ITSVGRWSVFGEVI 369
ITS ++S+ GE++
Sbjct: 181 ITSSSKFSMMGEIL 194
>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
Length = 422
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 213/366 (58%), Gaps = 22/366 (6%)
Query: 13 KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
KPL+VAGC+P+ ++ E E S++G + + ++V+ TL G + L L +
Sbjct: 67 KPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSDLSKVG 126
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G KEVWL
Sbjct: 127 LPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGCKEVWL 186
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ + +
Sbjct: 187 TSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDSYDNDK 243
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
V+ FLH+PVQSGSD VL+ M R +T +R +V + E I+TDII GFP ET+E+
Sbjct: 244 VFKFLHIPVQSGSDKVLNDMKRGHTSKTYREIVSKIKERFVDFTISTDIIIGFPSETEEE 303
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT----- 305
F +T++L+ E K V++S++ RPGT AA +++ +A VK+R++ +FE +
Sbjct: 304 FQKTISLLDETKPDVVNLSKYSARPGTEAAEWEQIDAAEVKRRTK---IIFEQISKLSMD 360
Query: 306 ---PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++G +GRV E+ +GI G Y + V LG S V+IT
Sbjct: 361 SNQKWIGWKGRV---LFDEMTDEGIK--GRNFAYKPIAVEDDVE-LGQSHTVEITDATVK 414
Query: 363 SVFGEV 368
+ G++
Sbjct: 415 RLVGKI 420
>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
Length = 429
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 179/283 (63%), Gaps = 6/283 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + ++ + +++GV+ IDR+V+ VE ++G + V ++ L L
Sbjct: 73 KKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKRNLDKL 132
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+W
Sbjct: 133 DLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQGYKEIW 192
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E +
Sbjct: 193 LSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIEAYQDD 249
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
VY FLH+PVQSG + +L M R YT+ +F +V+ + P + + TDII GFPGE++E
Sbjct: 250 KVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAFRKKFPDLNLHTDIIVGFPGESEE 309
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
F ++V LIK K +V++S++ PRPGT AA+ K++P ++K+
Sbjct: 310 AFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWLIKE 352
>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 422
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 208/364 (57%), Gaps = 16/364 (4%)
Query: 13 KPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
KPLVVAGC+P+ ++ E + S++G + + ++V++ TL+G + L L +
Sbjct: 67 KPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSDLSKVG 126
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LPKVR N + I+ I GC+ CT+C+TK ++G L SY + +V +V T I++G KE+WL
Sbjct: 127 LPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGCKEIWL 186
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+S D G YG DI +LP L+NA V E+P D M+R+GM NP ++ E+ +
Sbjct: 187 TSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKSFDSDK 243
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
VY FLH+PVQSGS+ VL+ M R +T++ + VV E I+TDII GFP ET+ED
Sbjct: 244 VYKFLHIPVQSGSNKVLNDMKRGHTVNTVKEVVKKAKERFENFTISTDIIVGFPSETNED 303
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFT 305
F +T LI E + V++S++ RPGT AA ++ ++ VK+RSR + + E
Sbjct: 304 FEKTFKLINEIRPDIVNLSKYSARPGTEAAEWDQIEASEVKRRSRIIFNQINKISLENNQ 363
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
++G G+V E ++GI G + Y V V +G + V+I S+
Sbjct: 364 KWIGWRGKV---LFDEETSEGIK--GRNEAYKSVFVKDKIK-IGQTHTVEIIDATTHSIL 417
Query: 366 GEVI 369
G+++
Sbjct: 418 GKIV 421
>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
Length = 422
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 211/377 (55%), Gaps = 18/377 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + + K ++V GC+P + D + I+GV+ IDR+VE ++ KG +
Sbjct: 55 MSKRIKELIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLIS 114
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + + L+LP++ + V ++PI+ GCL ACTYC T+ ARG L SY E +V V
Sbjct: 115 VEGWKERSIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWV 174
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++
Sbjct: 175 KEALAKGYKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIK 231
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ EV + +Y FLH+PVQSG + +L M R YT+ +F +V + + + + T
Sbjct: 232 ILDELVEVYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVKEFRKHIKDLNLNT 291
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGE++E F TV L+K K ++++S+F PRPGT AA+M+ ++ VK+RSR
Sbjct: 292 DIIVGFPGESEEAFQNTVELVKRIKPDKINVSRFSPRPGTLAAKMEGQIVGWKVKERSRY 351
Query: 297 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
L + +E Y+G E V +T + + G T Y +++P +G
Sbjct: 352 LHRLRLSISYEINKRYIGREVEV----LTHSPGEKGGIEGRTMNYKDIILPDAP--IGEF 405
Query: 352 ALVKITSVGRWSVFGEV 368
VK+T + G++
Sbjct: 406 VRVKVTKATSTYLMGKL 422
>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
KOD1]
Length = 427
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 189/317 (59%), Gaps = 11/317 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + + K ++ GC+ + D+ + ++GV+ IDR+ E ++ +G +
Sbjct: 57 MARRIRELLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVS 116
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V +K+ L+LP++ ++ V ++PI+ GCL ACTYC T+ ARG L SY E ++ V
Sbjct: 117 VEGWKERKVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +++
Sbjct: 177 KEALARGYKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIK 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ EV + P VY FLH+PVQSG + VL M R YT+ +F +V +PG+ + T
Sbjct: 234 FLDELIEVYQDPKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEFRRKIPGLNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-- 295
DII GFPGE +E F TV L+K + ++++S++ PRPGT AA+ K++P VK+RSR
Sbjct: 294 DIIVGFPGEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRIL 353
Query: 296 ---ELTSVFEAFTPYLG 309
L +E YLG
Sbjct: 354 HRLRLQIAYEINQTYLG 370
>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
Length = 422
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 215/376 (57%), Gaps = 17/376 (4%)
Query: 2 DTLIAKCKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEV 58
+ ++ + KS K KPL+VAGC+P+ +D E + S++G + + ++V+ TL G
Sbjct: 55 NKMMHRIKSLKSKPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQ 114
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +++
Sbjct: 115 IALEDSDLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQ 174
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
T I +G KE+WL+S D G YG DIG +LP L+NA+V E+P + M+R+GM NP ++
Sbjct: 175 TEIKEGCKEIWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRI 231
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ + E + V+ FLH+PVQ GS+ VL M R +T FR +V + I+TD
Sbjct: 232 KERLIESFDNDKVFKFLHIPVQCGSNKVLHDMKRGHTEGTFREIVKKARDRFEQFTISTD 291
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II GFP ET+EDF +T+ L+ E K V++S++ RPGT AA K++ + +K+RS+ +
Sbjct: 292 IIVGFPSETEEDFQKTIALLDETKPDVVNLSKYSARPGTDAAEWKQLDATEIKRRSKVIF 351
Query: 299 S-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
E+ ++G +G+V E+ +GI G Y + V +M G S
Sbjct: 352 EQISKLSIESNKKWIGWKGKV---LFDEMTDEGIK--GRNYAYKPIAVEDKVSM-GESHT 405
Query: 354 VKITSVGRWSVFGEVI 369
V+IT V + G+++
Sbjct: 406 VEITDVTVKRLIGKIV 421
>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
Length = 418
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 209/374 (55%), Gaps = 15/374 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + K K L++AGC+ Q + + SIVG Q ID++VE VE +G +
Sbjct: 56 MKQRIKELKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--I 113
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L K+L P++ K + I+PI GC G C +C TK AR L SY ++V V+
Sbjct: 114 FLEESKELVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVK 169
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ G E+ L+++DT AYG DI NL LL I L +G+ M+RIGM P +
Sbjct: 170 EAVQKGAVEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQ 226
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ EI E+++ VY FLH+PVQSG D VL MNR+YT+ ++R +V + + +P + I TD
Sbjct: 227 IDEILEIIKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTD 286
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE DE F T+NLIKE KF ++H++ + RP T +A M +VP ++ K+R +
Sbjct: 287 IIIGHPGEDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMKIAN 346
Query: 299 SVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
V+E A++ + G + TE+ G ++G T Y+ V++ + LG VKI
Sbjct: 347 EVYEEVAYSVHSEYLGSNALVLTTELGRKG-SIIGRTINYIPVVIKDY-DKLGEWINVKI 404
Query: 357 TSVGRWSVFGEVIK 370
T + + G+ I+
Sbjct: 405 TEASFFDLRGKFIQ 418
>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
Length = 424
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 11/317 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + + K ++V GC+P + + I+GV+ IDR+ E VE +G +
Sbjct: 57 MKERIKELLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVS 116
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + L+LP++ ++ ++PI GCL ACTYC T ARG L SY E +V V
Sbjct: 117 VEGWRERNSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ + G KE+ LSSEDTG YG DIG NL LL I A +G +R+GM NP ++
Sbjct: 177 KEALIRGYKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIR 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ + + VY FLH+PVQSG + VL M R YT+ +F +V VPG+ + T
Sbjct: 234 ILDELIDAYQSGKVYKFLHLPVQSGDNGVLRRMGRNYTVEEFEEIVGEFRRKVPGLNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGETDE F T+ L+K K ++++S++ PRPGT AA+ K++P VK+RSR L
Sbjct: 294 DIIVGFPGETDEAFENTLELVKRVKPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRVL 353
Query: 298 TSV-----FEAFTPYLG 309
+ +E YLG
Sbjct: 354 HRLRLGIAYEINQSYLG 370
>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
Length = 425
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 6/300 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + A + ++V GC+P + D + I+GV+ IDR+ E + +G +
Sbjct: 57 MRERIKELLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVS 116
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + + L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V
Sbjct: 117 VEGWRERNIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G +E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L
Sbjct: 177 KEALARGYREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLR 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ + VY F+H+PVQSG D VL M R YT+ F +V T + V + + T
Sbjct: 234 FLDELVDAYTDEKVYRFIHLPVQSGDDEVLKRMGRTYTVEQFEEIVRTFRKKVRDLNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGETDE F TV L++ + ++++S++ PRPGT AA+ K++P K+RSREL
Sbjct: 294 DIIVGFPGETDEAFRNTVGLVERVRPDKINVSRYSPRPGTIAAKWKQIPGWKAKERSREL 353
>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
Length = 428
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 200/348 (57%), Gaps = 9/348 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M I + A K ++V GC+P + + + +++GV+ IDR+ +E +G ++
Sbjct: 57 MARRIRELLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIIS 116
Query: 61 L---HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ ++ L L LP++ + ++PI GCL ACTYC T+ ARG L SY E +V V
Sbjct: 117 VPDWRKRNLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ I G +E+WLS+EDTG YG DIG NL LL+ I A DG +R+GM NP +++
Sbjct: 177 KWAIERGYREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIK 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ E + +Y FLH+PVQSG + +L M R YT+ +F +V P + + T
Sbjct: 234 FLDELIEAYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVAEFRRAFPDLNLHT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
D+I GFPGE +E F +TV LI+ + +V++S++ PRPGT AA+ K++P ++K+RSR L
Sbjct: 294 DVIVGFPGEDEEAFQRTVALIERIRPDKVNVSRYSPRPGTVAAKWKQLPGWIIKERSRLL 353
Query: 298 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
+ + + ME G+ ++ + G ++ T Y +++PS
Sbjct: 354 HHLRLRISYEINMEYIGKRLKVLVHGPGKKG-NIDAVTMNYKHIILPS 400
>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW97M7]
Length = 422
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 207/367 (56%), Gaps = 16/367 (4%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
+S KPLVVAGC+P+ R E + S++G I + ++V+E TL G +V L L
Sbjct: 63 QSQSKPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTDL 122
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+ +PK+R N V I+ I GC+ CT+C+TK A+G L SY + +V +V+ +ADG K
Sbjct: 123 SKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGCK 182
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+WLSS D G YG DIG +L L+ V+++P D +R+GM NP F+ + +
Sbjct: 183 EIWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKSF 239
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ V+ FLHVPVQSGS+ VL+ M R +T+ F+ VV I+TDII G+P E
Sbjct: 240 ENNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKFRTKFGPFTISTDIIIGYPTE 299
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----F 301
T E+F +T+ L+KE + V++S++ RPGT AA M ++ A VK+RS+++T +
Sbjct: 300 TQENFEETIALLKETRPDIVNLSRYSQRPGTVAAEMPQIDVAEVKRRSKQVTELNNNISL 359
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
E ++G +G V + + DG + G Y + V +G + V++
Sbjct: 360 ENNRKWIGWKGNV----LFDENLDG-QVKGRNFAYKPIFVNEITE-IGQTCTVRVVGATN 413
Query: 362 WSVFGEV 368
S+ GE+
Sbjct: 414 HSLIGEI 420
>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
Length = 424
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 190/317 (59%), Gaps = 11/317 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M I + + K ++ GC+ + D + I+GV+ IDR+ E +E +G ++
Sbjct: 57 MAKRIRELLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVS 116
Query: 61 LH--RKKLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ R++ P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V
Sbjct: 117 VEGWRERNPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G +E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+
Sbjct: 177 KEALARGYREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLK 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ E + VY FLH+PVQSG + +L M R YT+ +F+ +V + +P + + T
Sbjct: 234 FLDELIEAYQDEKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAFRKKIPELNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGET+E F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL
Sbjct: 294 DIIVGFPGETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARWKQLPGWLVKERSREL 353
Query: 298 TSV-----FEAFTPYLG 309
+ +E Y+G
Sbjct: 354 HRLRLQIAYEINKAYVG 370
>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
Length = 424
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 179/288 (62%), Gaps = 6/288 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKKLP-AL 69
K ++ GC+ + + + I+GV+ IDR+ E + +G ++ + R++ P L
Sbjct: 69 KKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRERNPDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E ++ VR ++ G +E+
Sbjct: 129 ELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRGYREII 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E +
Sbjct: 189 LSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIEAYQDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+Y FLH+PVQSG + +L M R YT+ +F +V+ + +P + + TDII GFPGE+DE
Sbjct: 246 KIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRKKIPDLNLNTDIIVGFPGESDE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL
Sbjct: 306 AFRNTVELVKRVKPDKINVSRYSARPGTIAARWKQLPGWLVKERSREL 353
>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
DSM 2375]
gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
smithii DSM 2375]
Length = 426
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 207/367 (56%), Gaps = 14/367 (3%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 66 KFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIRECGFS 123
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I DG
Sbjct: 124 KDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAIDDG 183
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ EI +
Sbjct: 184 AVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDEIID 240
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII G+P
Sbjct: 241 AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYP 300
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 301 TESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEI 360
Query: 305 TPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
T E G V+ + E+ + G + T Y+ V+V G LG VKIT
Sbjct: 361 TEEENKELVGSVQNAVVVEVGSKG-GFIAKTDSYIPVIV--DGVNLGDFIKVKITDATAT 417
Query: 363 SVFGEVI 369
+ G+V+
Sbjct: 418 YLKGDVV 424
>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
Length = 426
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 207/367 (56%), Gaps = 14/367 (3%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 66 KFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIRECGFS 123
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I DG
Sbjct: 124 KDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAIDDG 183
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ EI +
Sbjct: 184 AVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDEIID 240
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII G+P
Sbjct: 241 AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYP 300
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 301 TESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEI 360
Query: 305 TPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
T E G V+ + E+ + G + T Y+ V+V G LG VKIT
Sbjct: 361 TEEENKELVGSVQNAVVVEVGSKG-GFIAKTDSYIPVIV--DGVNLGDFIKVKITDATAT 417
Query: 363 SVFGEVI 369
+ G+V+
Sbjct: 418 YLKGDVV 424
>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
739]
Length = 424
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 207/378 (54%), Gaps = 18/378 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + + K ++V GC+P + + I+GV+ IDR++ +E +G +
Sbjct: 55 MARRIKELLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLIN 114
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + + L++P+V + V ++PI+ GCL ACTYC T+ ARG L SY +V V
Sbjct: 115 VEGWRERSIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWV 174
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G KE+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++
Sbjct: 175 KEAVAKGYKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVK 231
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ E + +Y FLH+PVQSG + +L M R YT+ +F +V + + + + T
Sbjct: 232 VLDELIEAYKDNKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREFRKHIKDLNLNT 291
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGE++E F TV LIK + ++++S+F PRPGT AARMK ++ VK+RSR
Sbjct: 292 DIIVGFPGESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQIVGWRVKERSRY 351
Query: 297 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
L + +E YLG E V +T + G T Y +++P +G
Sbjct: 352 LHRLRLSISYEINRRYLGREMEV----LTHGEGKKGGIEGRTMNYKDIILPEAP--VGEF 405
Query: 352 ALVKITSVGRWSVFGEVI 369
VK+T + GE++
Sbjct: 406 VKVKVTKTTSTYLLGELV 423
>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
Length = 350
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 156/239 (65%), Gaps = 20/239 (8%)
Query: 149 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 208
LL +V +PP MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PVQSGSDAVL
Sbjct: 24 LLAGLVPLIPP--GCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 81
Query: 209 AMNREYTLSDFRTVVDTLIELVP-----------------GMQIATDIICGFPGETDEDF 251
AM REYT+ +F TVVD L++ V + IATD+ICGFP ET+++F
Sbjct: 82 AMKREYTVEEFSTVVDYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNF 141
Query: 252 NQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGM 310
+T LIK+Y+FP +HI+QF+ RPGTPAA M +K S+ VK R+R L +F ++ Y G
Sbjct: 142 EETFELIKKYRFPVLHINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTYDGR 201
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
G R+ ITE + DG VGHTK Y Q+L+P ++ G LV+IT ++ + G +I
Sbjct: 202 IGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITECDKFFMRGIII 260
>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
Length = 424
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 172/295 (58%), Gaps = 6/295 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE--- 57
M I + + K ++ GC+ + + I+GV+ IDR+ E + +G +
Sbjct: 57 MRERIKELLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLIS 116
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + + L+LP++ +N ++PI+ GCL ACTYC T+ ARG L SY E +V V
Sbjct: 117 VEGWRERSIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++
Sbjct: 177 KEALARGYKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIK 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ E R VY FLH+PVQSG D VL M R YT+ +F +V T +P + + T
Sbjct: 234 FLDELVEAYRDEKVYKFLHLPVQSGDDEVLRRMGRTYTVEEFEEIVRTFRRRIPHLNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
DII GFPGET+E F T L+K + ++++S++ PRPGT AAR K++P VK+
Sbjct: 294 DIIVGFPGETEEAFQNTAELVKRVRPDKINVSRYSPRPGTVAARWKQLPGWKVKE 348
>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
onnurineus NA1]
Length = 425
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 175/295 (59%), Gaps = 6/295 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHE 57
M I + + K ++V GC+ + D+ + I+GV+ IDR+ E + E K
Sbjct: 57 MRERIKELLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVS 116
Query: 58 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
V + L L LP++ R+ ++PI+ GCL ACTYC T+ ARG L SY E +V V
Sbjct: 117 VEGWRERSLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWV 176
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +A G +E+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++
Sbjct: 177 KEALARGYREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIK 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ E + VY FLH+PVQSG + VL M R YT+ +F +V+ +PG+ + T
Sbjct: 234 FLDELIEAYQDEKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEFRRKIPGLNLNT 293
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
DII GFPGET+E F TV L+K + ++++S++ PRPGT AA+ K++P VK+
Sbjct: 294 DIIVGFPGETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKE 348
>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
2088]
gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
2088]
Length = 427
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 207/364 (56%), Gaps = 22/364 (6%)
Query: 13 KPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K L+VAGC+ + LK++ S +G ++ + EVV+ + G++ ++ + ++
Sbjct: 70 KELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGKDSKIKVE 129
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+PK R N + I+ I GCLG C+YC T+ ARG L SY ++S+V V+ I DG E+ L
Sbjct: 130 MPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIEDGCVEIQL 189
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+++DT AYGRDIG +LP L+N I + DG +R+GM +P + + L E+ +
Sbjct: 190 TAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELVDAYDSEK 246
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
+Y FLH+PVQSGSD VL MNR Y + DF+ +V + +P + IATDII GFP E+ ED
Sbjct: 247 IYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFRKKIPEISIATDIIVGFPTESRED 306
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFT 305
F +T L+ E K +H S++ RPG ++++ ++ VK+RSR + + E
Sbjct: 307 FKKTCELLNEIKPNFIHSSRYAHRPGAKSSKLDELDHNEVKERSRIIEEIKNKIMREENK 366
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS--TGNML------GTSALVKIT 357
+G E +++ I E G + +G T Y+ V+V S G ++ TS +K
Sbjct: 367 KLVGTE---QKVLIVEKGKKGGY-IGRTSSYIPVIVNSGKPGEIIKVKIKEATSTYLKGD 422
Query: 358 SVGR 361
+VGR
Sbjct: 423 AVGR 426
>gi|402584247|gb|EJW78189.1| radical sam protein, partial [Wuchereria bancrofti]
Length = 224
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Query: 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 223
MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF VV
Sbjct: 1 MLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDFCRVV 60
Query: 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283
D +I+ VP + IATD IC +P ET+ DF +++ L+++Y+FP + I+QFYPR GTPAA +K
Sbjct: 61 DYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAANLK 120
Query: 284 KVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
K+ + ++R+ E++S+F +++ Y G R+ + E+A D H VGH K Y L+P
Sbjct: 121 KIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKYYEHFLIP 180
Query: 343 STGNMLGTSALVKITSVGRW 362
S +LG V+IT V ++
Sbjct: 181 SKKCLLGKWVQVRITDVSKF 200
>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
HVE10/4]
gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
HVE10/4]
Length = 421
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 12/370 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + + K LVVAGC+ + L S++G Q ++R+++V++ E
Sbjct: 57 MKQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEE 111
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
R + + AL P+ K + I+P+ GC G C++C TK AR L SY + +V R
Sbjct: 112 RKIVLEGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAAR 170
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P +
Sbjct: 171 DAVKAGAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRI 229
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ + EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TD
Sbjct: 230 IDNLIEVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTD 289
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR +
Sbjct: 290 IIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIAN 349
Query: 299 SVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++E A + +L G R+ TE+ G +VG Y+ V++ S LG VKI
Sbjct: 350 KLYEDIALSIHLEYVGSTSRVITTELGRKG-SVVGRLMNYIPVVIKSENVELGKWYNVKI 408
Query: 357 TSVGRWSVFG 366
T + + G
Sbjct: 409 TEASFYDLRG 418
>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
Length = 421
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 208/372 (55%), Gaps = 16/372 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + + K LVVAGC+ + L S++G Q ++R+V++V+ E
Sbjct: 57 MKQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVKS-----EE 111
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
R + + AL P+ K + I+P+ GC G C++C TK AR L SY + +V R
Sbjct: 112 RKIVIEGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAAR 170
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
I G +E+ L+ +DT AYG D+G ++L ++N VA++ DG M+RIGM P +
Sbjct: 171 DAIQSGAREIELTGQDTAAYGLDLGGSISLVDVVNK-VADI--DGDFMIRIGMMTPEQAM 227
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
+ ++ E +R+P VY F+H+PVQSG D VL MNR+YT+ +++ ++ + +P + I
Sbjct: 228 RIMDDLIEAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNIT 287
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII G PGE +E FN T+ L+KE +F ++H++ + RP T +A M +VP ++ KKR +
Sbjct: 288 TDIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQI 347
Query: 297 LTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
++E A + +L G R+ TE+ G ++G Y+ V++ S LG V
Sbjct: 348 ANKLYEDLALSIHLDYVGSTSRVITTELGRKG-SVIGRLMNYIPVVIRSENVELGKWYDV 406
Query: 355 KITSVGRWSVFG 366
KIT + + G
Sbjct: 407 KITEASFYDLRG 418
>gi|351710010|gb|EHB12929.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
glaber]
Length = 279
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 137/203 (67%), Gaps = 21/203 (10%)
Query: 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 223
MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VV
Sbjct: 1 MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCMADFKRVV 60
Query: 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283
D L + VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+
Sbjct: 61 DFLKKKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKME 120
Query: 284 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
+VP+ V+ G +++ +TE + D V H + Y QVLVP
Sbjct: 121 QVPTQVI---------------------GEKQKVLVTEESFDSKFYVAHNQFYEQVLVPK 159
Query: 344 TGNMLGTSALVKITSVGRWSVFG 366
+ +G V I G+ + G
Sbjct: 160 NPSFMGKMVEVDIYESGKHFMKG 182
>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
grunniens mutus]
Length = 302
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/183 (59%), Positives = 136/183 (74%), Gaps = 9/183 (4%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLK 180
HL+
Sbjct: 300 HLE 302
>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 202/372 (54%), Gaps = 24/372 (6%)
Query: 6 AKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
A+ S PLVVAGC+ QG + LK+ V +V ++ID++VE V + G L
Sbjct: 60 ARELSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEW 117
Query: 64 KKLPALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +D R+ + V I+PI GC+GACTYC T+ ARG L S+ +++ +
Sbjct: 118 R---FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFL 174
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G E+WL+SEDT AYGRD+G NL L+ + ++LP G +R+GM P L L E
Sbjct: 175 RKGAVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSE 231
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ R VY F H+PVQSGSD VL M R YT+ F ++VD + + + + IATDII
Sbjct: 232 LIGAYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIRKELSDVSIATDIIV 291
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFP E +EDF T+ +++ K V++S+F RPGT AA M+K+P A+V +RS+E+ +
Sbjct: 292 GFPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLPDAIVSRRSKEVNELV 351
Query: 302 EAFTP-----YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
E YLG E V ++E G G T Y V + LG LV+I
Sbjct: 352 ERIKEEVNERYLGRELEV---LVSEKGEKGFQ--GRTNSYKPVALREVK--LGHFYLVEI 404
Query: 357 TSVGRWSVFGEV 368
+ GEV
Sbjct: 405 VDFRANYLIGEV 416
>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.14.25]
gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.S.2.15]
gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.G.57.14]
gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.N.15.51]
gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.16.27]
gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.D.8.5]
gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.S.2.15]
gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.14.25]
gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.G.57.14]
gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.N.15.51]
gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.16.27]
gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.D.8.5]
Length = 421
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 12/370 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + + K LVVAGC+ + L S++G Q ++R+++V++ E
Sbjct: 57 MKQRIKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEE 111
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
R + + AL P+ K + I+P+ GC G C++C TK AR L SY + +V R
Sbjct: 112 RKIVLEGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAAR 170
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P +
Sbjct: 171 DAVKAGAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRI 229
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ + EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TD
Sbjct: 230 IDNLIEVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTD 289
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR +
Sbjct: 290 IIIGHPGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIAN 349
Query: 299 SVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++E A + +L G R+ TE+ G +VG Y+ V++ S LG VKI
Sbjct: 350 KLYEDIALSIHLEYVGSTSRVITTELGRKG-SVVGRLMNYIPVVIRSENVELGKWYNVKI 408
Query: 357 TSVGRWSVFG 366
T + + G
Sbjct: 409 TEASFYDLRG 418
>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
Length = 421
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 17/363 (4%)
Query: 13 KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
+PLVVAGC+P+ + G +++G I R V VVE L+G L L
Sbjct: 67 RPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTDLTKTG 126
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LPKVR N+ V I+ I GCL CT+C+TK A+G LGSY + +V +VR + DG EVWL
Sbjct: 127 LPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGCSEVWL 186
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+S D G YG DI +LP LL+A++ +P G +R+GM NP ++ + +A+ +
Sbjct: 187 TSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKSFQSDK 243
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
+Y FLH+PVQSGS +L M R T F G I+TD+I GFPGETD D
Sbjct: 244 LYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRFRSEFGGFTISTDVIVGFPGETDGD 303
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFT 305
+ T LI+E + V++S++ RPGT AA ++V VK+RS+ + + +
Sbjct: 304 YESTEALIEEVRPDTVNLSRYSARPGTEAAGREQVDVQTVKRRSKRMYELSCRISLDRNK 363
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
++G +G V +E GI G + Y V + G +LG + V+IT +
Sbjct: 364 EWVGWKGDV---LFSEATEGGIR--GRNREYKPVY--AEGAVLGETRQVRITKATNHCLV 416
Query: 366 GEV 368
GE+
Sbjct: 417 GEI 419
>gi|440912126|gb|ELR61722.1| hypothetical protein M91_07895, partial [Bos grunniens mutus]
Length = 277
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 135/190 (71%)
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
KE+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDI
Sbjct: 1 KEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDI 60
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
ICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 61 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSR 120
Query: 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 121 IFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYES 180
Query: 360 GRWSVFGEVI 369
G+ + G+ +
Sbjct: 181 GKHFMKGQPV 190
>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 454
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 190/339 (56%), Gaps = 8/339 (2%)
Query: 11 AKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
+ KPLVVAGC+ + +R + SIVG IDRV + L G + LL +
Sbjct: 71 SSKPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQK 129
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EV
Sbjct: 130 VGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREV 189
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
WL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R
Sbjct: 190 WLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRD 246
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
V+ F+H+PVQSGSD VL M R + S F +V + IATD+I GFP E++
Sbjct: 247 DKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESE 306
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTP 306
EDF+ +++L+ E + V++S++ RPGT A+RM+++ V+ +RS+ + V ++
Sbjct: 307 EDFDASIDLLLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVCYSR 366
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 345
L +G + + E+ G + G Y + + G
Sbjct: 367 NLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIRKG 405
>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
Length = 434
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 190/339 (56%), Gaps = 8/339 (2%)
Query: 11 AKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
+ KPLVVAGC+ + +R + SIVG IDRV + L G + LL +
Sbjct: 51 SSKPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQK 109
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EV
Sbjct: 110 VGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREV 169
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
WL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R
Sbjct: 170 WLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRD 226
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
V+ F+H+PVQSGSD VL M R + S F +V + IATD+I GFP E++
Sbjct: 227 DKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESE 286
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTP 306
EDF+ +++L+ E + V++S++ RPGT A+RM+++ V+ +RS+ + V ++
Sbjct: 287 EDFDASIDLLLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVCYSR 346
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 345
L +G + + E+ G + G Y + + G
Sbjct: 347 NLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIRKG 385
>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
Length = 453
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 193/352 (54%), Gaps = 13/352 (3%)
Query: 13 KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K +V+AGC+ + L + G +V + R+ VE + L RK+LP
Sbjct: 74 KRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVESGTELLVEDPLERKRLP--- 130
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
P+ ++ V + I GCL C +C TK AR +L S +E +V V+ ++ GV E+ L
Sbjct: 131 -PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKKLVEAGVVEIRL 189
Query: 131 SSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ +DT YG DI LP LL I V E P +R+GM +P L E+ +++
Sbjct: 190 TGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQALPFWDELLDIM 249
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
HPC++ FLH+PVQSG D VL M REYT+ ++R +V +PG+ IATDII G PGE
Sbjct: 250 SHPCIFKFLHIPVQSGDDRVLRVMRREYTVDEYRRMVYEARSKLPGVTIATDIIVGHPGE 309
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AF 304
+E F TV L++E F +VH++Q+ PRP T AAR+ +VP V K+RSR L V E +
Sbjct: 310 DEEAFENTVRLVEELLFERVHLAQYTPRPRTLAARLPQVPDPVKKERSRRLQRVIEDVGY 369
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ G + +TE ++G LV T Y+QV++P LG++ KI
Sbjct: 370 RVHASYVGANALLVVTEEGSEGT-LVARTHNYMQVILPPGSANLGSTIEAKI 420
>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
Length = 422
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 190/322 (59%), Gaps = 9/322 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K ++ AGC+ + +R ++ ++V + R+ E V+ L G V +++
Sbjct: 59 IEEIKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVS 117
Query: 65 KLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
++ ++ V+ + + I+ I+ GCLG C+YC TK ARG L S+++E +V V+ V+
Sbjct: 118 RVDKAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVV 177
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G KE+ L+S+DTGAYG+D G LP LL I +E+ +G +R+GM NP +E L +
Sbjct: 178 EMGYKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDD 234
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ E + +Y FLH+PVQSG + VL M R +T+ DF VV + + ++TD+I
Sbjct: 235 LIEAFKSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAFRKAFDDVLLSTDVIV 294
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFP E++E F +TV LIK K V+I++F PR GT AA++K +P + K+RSR+LT +
Sbjct: 295 GFPTESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAKLKDIPDWIKKERSRKLTKIC 354
Query: 302 E--AFTPYLGMEGRVERIWITE 321
E L G+ R+ +T+
Sbjct: 355 EEIGLENNLKFVGKKLRVLVTK 376
>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
Length = 413
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 177/322 (54%), Gaps = 22/322 (6%)
Query: 5 IAKCKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
I + K K +V+ GC V + KEL+ +S+V + DR+ E +E T KG V L +
Sbjct: 56 INQLKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEK 115
Query: 64 KKLP---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
KK+ A L K R I+ I GCL CTYC TK AR SY + + +
Sbjct: 116 KKIYKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEK 170
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ G+K +L+ DT YG+DI +L LL ++ +G +R+GM NP F LE +
Sbjct: 171 LKQGIKIFYLTGPDTATYGKDINYSLADLLKDLIE---IEGDFYIRVGMANPTFFLEQID 227
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ +V + ++ F H+PVQSGS+ VL MNR YT+ +++ ++ L + P TDII
Sbjct: 228 ELIDVFKSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKLRKHFPLATYVTDII 287
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
G+P ET+EDF QT+ L++E KF ++IS+F+ RPGT A +K++ +V R + L V
Sbjct: 288 VGYPTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNLKQLDPEIVTNRVKRLKEV 347
Query: 301 FEAFTPYLGMEGRVER--IWIT 320
F ++G ER +W+
Sbjct: 348 F--------LQGAYERNKLWLN 361
>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
Length = 425
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 190/340 (55%), Gaps = 16/340 (4%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
LI+ C P +A P+ S +G +I E+V +G+ VR
Sbjct: 73 LISGCMVEIDPEKLADAAPEASW----------IGPHKIKSTYEIVNSVHEGNIVRETGF 122
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
P + LPKVR N + I+ I GC G CTYC T+ ARG + SY+ E + + +
Sbjct: 123 SSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAVTE 182
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G KE+ L+++DT AYGRD G +L L+ ++++++ DG LR+GM +P I+ + I
Sbjct: 183 GCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDPII 239
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ + Y FLH+P+QSGSD VL MNR +T+ +++T+V E +P + I+TDII G+
Sbjct: 240 KAFKKGKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRFREEIPDISISTDIIVGY 299
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 302
P ETD+DF T+NLIKE + +HIS++ RPGT +++++++ +K+RS+ L +
Sbjct: 300 PTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEEIEHETMKERSKALNDLKME 359
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 341
A M G + I +T G + VG + GY V++
Sbjct: 360 IAMKKNSMMIGSKQTILVTNKGRKGGY-VGRSDGYKTVII 398
>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
Length = 424
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 199/352 (56%), Gaps = 14/352 (3%)
Query: 12 KKPLVVAGCVPQGSRDLKELEGVSI----VGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
+K L++AGC+ D ++LE ++ +G ++I+ EVVE +KGH VR
Sbjct: 69 QKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRETGHGDEF 126
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP+ R N +V IL I GCLG C+YC T+ ARG L SY + L +ADG E
Sbjct: 127 KTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAVADGCVE 186
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L+++DT AYG+D G L L+N I + G +R+GM +P I L+ I +
Sbjct: 187 IQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLESIITAFK 243
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ VY FLH+P+QSGSD +L MNR++++ ++ +V +P + +ATDII G+P E
Sbjct: 244 NDKVYKFLHLPLQSGSDQILEDMNRDHSVEEYLEIVKHFQTEIPELSLATDIIVGYPTEG 303
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--VFEAFT 305
++DF T+N+I+E + +HIS+++ RPGT ++ + ++ +KKRSR L V A
Sbjct: 304 EDDFEGTMNVIREIRPDFLHISKYHHRPGTSSSLLPEIDHQTMKKRSRNLNDLKVEIATV 363
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ G ++I IT+ + G +L G T Y V+V +LGT V IT
Sbjct: 364 NNKKLLGTHQKILITDKGSKGGYL-GRTSSYKTVVVEEA--ILGTFLDVNIT 412
>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
Length = 425
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 203/363 (55%), Gaps = 14/363 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
K L+++GC+ + D K+L+ S +G ++ E+V+ G VR +
Sbjct: 70 KKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRSIGYGTDCK 127
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ LPK+R N F+ I+ I GC G C+YC T+ ARG L SY E + V +A+G E+
Sbjct: 128 VCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEAVAEGCVEI 187
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
++++DT AYG+D G +L L+N I +G +R+GM +P I++ + I + ++
Sbjct: 188 QITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVDGIIKAFKN 244
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
VY FLH+P+QSG+D VL MNR +T++DF+ VV E +P M I+TD+I G+P E +
Sbjct: 245 EKVYKFLHIPIQSGNDDVLRDMNRGHTVADFKDVVSKFKENIPEMSISTDVIVGYPTEDE 304
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA--FTP 306
+ F T+NL+ + + ++IS++ RPGT ++ M+++ +KKRS+ L + A +
Sbjct: 305 DAFKDTLNLVADIRPDFINISKYGHRPGTRSSLMEEISHESMKKRSKSLNDLKTAISYEN 364
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
L M G + + IT + G + + Y QV+V + ++G+ + KI + G
Sbjct: 365 NLKMLGSTQNVVITGKGSKGGY-ISRANSYKQVIVENA--VIGSFSEAKIIDAKSTYLMG 421
Query: 367 EVI 369
+I
Sbjct: 422 NLI 424
>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 435
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 179/302 (59%), Gaps = 8/302 (2%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 58
M + I + KPLVVAGC+P+ R ++ L + S++G I++ V+VV L G +
Sbjct: 62 MVSRIKAMSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRL 121
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
L +++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ +++
Sbjct: 122 VALEDSVADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIK 181
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
I G KEVWL+S D G YG+D+G +L LL A + +G +R+GM NP ++ E
Sbjct: 182 ADINAGCKEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEM 238
Query: 179 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L + +V + ++ FLH+PV+SGSD VL M R +T F V +P M I+T
Sbjct: 239 LNRMVDVFYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKTFLDAVQAFRSKIPEMTIST 298
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSR 295
D+I GFP ET++DF +T++L++ + V+IS++ RPGT AA+ K +V S V K+RS
Sbjct: 299 DVIVGFPSETEDDFKETLDLVERAEPDIVNISRYSARPGTEAAKWKGMRVSSQVAKERSE 358
Query: 296 EL 297
L
Sbjct: 359 RL 360
>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
Length = 418
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 205/375 (54%), Gaps = 18/375 (4%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + K LV+AGC+ L S++G Q I +V+VVE +E
Sbjct: 56 MKKRIRELSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNER 111
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+ K P++ LP+V + + ++PI GC G C +C TK AR +L SY + ++V V+
Sbjct: 112 VISLDSKTPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVK 169
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+I+ G KE+ L+ +DT YG D+G V LP ++ VA L +G M+R+GM P +
Sbjct: 170 RMISQGAKEIELTGQDTAVYGLDMGGKVTLPDVVKE-VASL--EGDFMIRVGMMTPEMAM 226
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
HL I E +P VY F H+PVQSG+D VL MNR+YT+ +FR +V + + + I
Sbjct: 227 RHLDSILEAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIRKKFRLVNIT 286
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII G PGE D F T+NL+KE +F ++HI+ + RP T ++ + +VP + K+R +
Sbjct: 287 TDIIVGHPGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTRSSMLAQVPGPIKKERLKR 346
Query: 297 LTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
S++E + + E GR R+ E D ++G T Y+ V++ +LG V
Sbjct: 347 AVSLYEELSREVHKEYLGRQMRVLALERGKDDT-IIGRTINYIPVILSDA--VLGNWYDV 403
Query: 355 KITSVGRWSVFGEVI 369
KI + + GE++
Sbjct: 404 KIVDSSFFDLRGEIV 418
>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 422
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 5/301 (1%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
I S KPL++AGC+P+ D L+ + S++ + V+ + L G + +
Sbjct: 60 IKSLSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESIS 119
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
K+ + LP++R N V I ++ GCL CT+C+ K ARG L SY +V + +
Sbjct: 120 SKRSNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVI 179
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
DG +E+WL+S+D G YG+DI +LP LLN I+ ++ DG M+R+GM NP + E + ++
Sbjct: 180 DGCREIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDL 236
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
P ++ FLH+PVQSGSD +L M R ++++DF V P + ++TDII G
Sbjct: 237 ITSYMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFRNAFPNISLSTDIIVG 296
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ETD F +T++L++ F V+IS+F RPGT A +P +VK+RS+ + +V +
Sbjct: 297 FPDETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSKPILPHKIVKERSKLMHTVAK 356
Query: 303 A 303
+
Sbjct: 357 S 357
>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
Length = 450
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 172/293 (58%), Gaps = 8/293 (2%)
Query: 13 KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
KPLV+AGC+P+ R E S++G I+ VV L G + L ++
Sbjct: 92 KPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSASDKIN 151
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ ++++ + G KE+WL
Sbjct: 152 IPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGCKEIWL 211
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HP 189
+S D G YG+D+G +L LLNA + +G M+R+GM NP ++ E L + + +
Sbjct: 212 ASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNTFQEND 268
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
++ FLH+PV+SGSD +L M R ++ F V T +P M I+TDII GFP ET+
Sbjct: 269 KLFKFLHIPVESGSDRMLRKMKRGHSAKTFLDAVKTFRSKIPEMTISTDIIVGFPSETES 328
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSRELTSV 300
DF +T+NL++ + V+IS++ RPGT AA+ K +V S V K RS L ++
Sbjct: 329 DFEETLNLVERAEPDIVNISRYGARPGTEAAKWKGMRVSSQVAKDRSERLHAL 381
>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
Length = 386
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/374 (35%), Positives = 200/374 (53%), Gaps = 30/374 (8%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + + K +VV GC+P R+L E +G+ + + +R HE +L +
Sbjct: 38 IKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTWEFER----------AHE--MLDLR 84
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
K P + +V V +PI GCLG CTYC TK ARGH+ S VE ++ RV+ + G
Sbjct: 85 KSP---MDQVFLWDAVATIPIANGCLGKCTYCITKIARGHIKSRPVEWIISRVKDALNMG 141
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ LS++DT AYGRDIG NL L+N I + DG +RIGM P LE + E+ E
Sbjct: 142 AVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LDGRFYVRIGMMEPRETLEIIDELIE 198
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ VY FLH+PVQSG D +L MNR YT DF ++ + +P + I+TD+I GFP
Sbjct: 199 SYKSSKVYKFLHIPVQSGDDRILRRMNRGYTAEDFERIIGEFRKKIPDITISTDVIVGFP 258
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 301
GETDE F T+++I+ K ++I++F PRP TPA K+ + VK+ S+ +T +
Sbjct: 259 GETDETFANTLDMIQRLKPDILNITRFSPRPKTPAYGWKRPSTNKVKEWSQRVTDLHLRN 318
Query: 302 --EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
E Y+ E V + + + + Y+ ++V +G L+KI+
Sbjct: 319 MEERMKSYVDREMEV----VVPSRGKRGNFLARSSNYLPIVVKDAE--IGGFYLLKISGF 372
Query: 360 GRWSVFGEVIKILN 373
+ + G++++ LN
Sbjct: 373 EKAHLKGKIVERLN 386
>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
Length = 428
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 195/335 (58%), Gaps = 12/335 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
K ++V GC+ + D K+LE + S +G Q+++ +VV+ T+ G VR P
Sbjct: 73 KKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREFGFSDEPK 130
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ +PK+R++ ++ ++ I GCLGACTYC T+ ARGHL SY ++ +V R I DG E+
Sbjct: 131 VCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAIEDGCVEI 190
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+++DT A+G+D G L L+ VA L DG +R+GM +P I L + E +
Sbjct: 191 ELTAQDTSAFGKDTGEKLSDLIKE-VASL--DGDFRVRVGMMHPRNIGNDLDNLIEAFKM 247
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
VY F+H+P+QSGSD VL M R +T+ D++ +V + + +P + IATDII G+P ET+
Sbjct: 248 EKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFKQAIPDITIATDIIIGYPTETE 307
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-FEAFTPY 307
EDF +T LI+E KF +H+S++ R G ++ + +P +K+RS+ L+ + FE
Sbjct: 308 EDFMKTAELIREIKFNLIHLSKYQHREGAISSSLDNIPFDDMKRRSKYLSEIKFEMLEEE 367
Query: 308 LG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLV 341
++ R + E + G + T Y+ V+V
Sbjct: 368 NKFLQDREMDALVVEKGSKG-GFIAKTNSYIPVVV 401
>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
5348]
Length = 418
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 197/369 (53%), Gaps = 24/369 (6%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C + +P +V PQ S ++G Q I VV+ VE + LH
Sbjct: 71 VVAGCLAGAEPGLVMSLAPQSS----------LIGPQSIGDVVKAVESR---ERIVSLH- 116
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+LP++ LP V + ++PI GC G+C +C TK AR L SY +V R I
Sbjct: 117 GELPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEK 174
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEI 182
G KE+ L+ +DT AYG D+G + I L +V E+ +G M+R+GM P + L ++
Sbjct: 175 GAKEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDL 232
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ +P VY F H+PVQSG+D VL AMNR+YTL +FR +V + + P + I TDII G
Sbjct: 233 LDAWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIRKRFPLVNITTDIIVG 292
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
PGE + F T+NL+KE +F ++HI+ + RP T +A M +VP + K+R + +++E
Sbjct: 293 HPGEDENAFEDTLNLMKELRFERIHIAMYSLRPNTRSAMMTQVPGPIKKERLKRAVTLYE 352
Query: 303 AFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ + E GR ++ + E D +G T Y+ V+V LG +IT
Sbjct: 353 ELSREIHREYVGRKMKVLVLENGKDNTK-IGRTLNYIPVIVKDAD--LGKWYEAEITDSS 409
Query: 361 RWSVFGEVI 369
+ + G ++
Sbjct: 410 FFDLRGSIV 418
>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
50581]
Length = 525
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 23/317 (7%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWL 130
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD V +E+WL
Sbjct: 200 PIHRANPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWL 259
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRH 188
+ EDT A+GRD G LL I L + T ML+IGMT+P ++ + ++
Sbjct: 260 TGEDTLAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQC 319
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
VY FLH+PVQSGSD +L+ M R Y + F L +P + + TDIICGFPGETD
Sbjct: 320 KYVYKFLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICGFPGETD 379
Query: 249 EDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
ED Q++NL + +F V+I+Q+Y R TPAA M++VP++ ++R+RE++ V +
Sbjct: 380 EDHAQSLNLFRNLSKDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTREMSEVVKG 439
Query: 304 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGY-----------VQVLVPSTGNMLGTSA 352
G+V I + E + GH + Y +++ + LGT
Sbjct: 440 SFRRDQYHGQVHDIMVLE----KLQTEGHGRKYGGKTYNNITVAIEIDDQAASLELGTYV 495
Query: 353 LVKITSVGRWSVFGEVI 369
V+I + ++ G VI
Sbjct: 496 RVRIIGSTKVALIGLVI 512
>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
Length = 525
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 15/313 (4%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWL 130
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD + +E+WL
Sbjct: 200 PVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPIIRELWL 259
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRH 188
+ EDT A+GR+ +LL + + T ML+IGMT+P ++ + +R
Sbjct: 260 TGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVINQEDSLISFMRC 319
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
VY FLH+PVQSGSD +L+ M R Y + F L VP + + TDIICGFPGETD
Sbjct: 320 KYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLCLDTDIICGFPGETD 379
Query: 249 EDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
ED Q++NL + K F V+I+Q+Y R TPAA M++VP++ ++R+RE++ V +
Sbjct: 380 EDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTREMSEVVKN 439
Query: 304 FTPYLGMEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKI 356
G+V I + E G G T + V + + LG+ V+I
Sbjct: 440 SFRRDQYHGQVHDIMVLERLQTENHGRQYGGKTYNNLTVAIEAVDQEVPIKLGSYVRVRI 499
Query: 357 TSVGRWSVFGEVI 369
T R ++ G V+
Sbjct: 500 TGSTRVALIGSVM 512
>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
Length = 525
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 176/313 (56%), Gaps = 15/313 (4%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWL 130
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R +AD V +E+WL
Sbjct: 200 PVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWL 259
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRH 188
+ EDT A+GR+ G LL + L + T ML+IGMT+P I+ +A +
Sbjct: 260 TGEDTLAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICC 319
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
VY FLH+PVQSGSD +L+ M R Y + F L VP + + TDIICGFPGETD
Sbjct: 320 KYVYKFLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDTDIICGFPGETD 379
Query: 249 EDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
ED Q++NL + K F V+I+Q+Y R TPAA M++VP++ ++R++E++ V +
Sbjct: 380 EDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTKEMSEVVKN 439
Query: 304 FTPYLGMEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKI 356
G+V I + E + G G T + V++ + LG+ V+I
Sbjct: 440 SFRRDQYHGQVHDIMVLEKLQTESHGRQYGGKTYNNLTVVIETVDQEVPIKLGSYIRVRI 499
Query: 357 TSVGRWSVFGEVI 369
T R ++ G V+
Sbjct: 500 TGSTRVALIGSVM 512
>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
Length = 425
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 199/352 (56%), Gaps = 14/352 (3%)
Query: 12 KKPLVVAGCVPQGSRDLKELEGVSI----VGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
+K L++AGC+ D ++LE ++ +G ++I+ EVVE + GH R
Sbjct: 69 QKKLIIAGCMV--DIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARETGHGDDI 126
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP+ R N V IL I GCLG C+YC T+ ARG L SY L +ADG E
Sbjct: 127 KTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAVADGCVE 186
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L+++DT AYG+D G +L L+N I + +G +RIGM +P I L+ I +
Sbjct: 187 IQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEAIITSFK 243
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ VY FLH+P+QSGS+ +LS MNR +++ ++ +V+ +P + +ATDII G+P E
Sbjct: 244 NEKVYKFLHLPLQSGSNQILSDMNRGHSVEEYLEIVNHFQIEIPELSLATDIILGYPTEN 303
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--VFEAFT 305
+ DF T+ +I+E + +HIS+++ RPGT ++ + ++ ++K+RSR+L V A
Sbjct: 304 ENDFQGTMEVIREIRPDFLHISKYHHRPGTRSSLLPEIDHQIMKRRSRKLNDLKVNIATG 363
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ G ++I IT+ + G +L G + Y V+V +LGT V+IT
Sbjct: 364 NNQKLLGTHQKILITDKGSKGGYL-GRSNSYKTVVVNEA--LLGTYVDVEIT 412
>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
Length = 433
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 201/372 (54%), Gaps = 27/372 (7%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEVRLLHRKK 65
+VV+GC+P+ D L + I+GV I R+ EV++ E K G + + +
Sbjct: 69 VVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRLEIFSSRP 128
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L+ P+ R N+ + I I+ GC C YC + ARG L S+ ++S+V VR +++G
Sbjct: 129 DDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVRKAVSEGC 188
Query: 126 KEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
+E+W++S+D YG R GV LP LL+ + + +G+ +R+GM NP + L ++
Sbjct: 189 REIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVYPILDDLL 245
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+V + +Y FLH+P+QS S+ VL MNR YT+S+ ++ + + TDII GF
Sbjct: 246 KVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKFRSRFNDLTLVTDIIVGF 305
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 300
PGET++DF ++++ +K Y+ +V+IS++ PRP T A + + S +V +RS EL V
Sbjct: 306 PGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRNIDSRIVVRRSNELHHVCDT 365
Query: 301 --FEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVKI 356
E+ +G G+V ++ D + ++ T+ Y V++P + G V+I
Sbjct: 366 VKLESKKEMVGWHGKV------FVSKDAKYKGVMARTESYKPVVIPESNLPPGQWCDVEI 419
Query: 357 TSVGRWSVFGEV 368
T G++
Sbjct: 420 TDTTSGYFLGKL 431
>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
Length = 402
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 23/369 (6%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C ++ +P VV P+ S ++G Q + ++V+VVE + K +V L
Sbjct: 53 VVAGCLASAEPAVVVSLAPEAS----------VIGPQSVQKIVDVVENS-KQRQVYLNED 101
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
K L PKV K + ILPI GC G C +C TK AR L SY +V VR +
Sbjct: 102 KPLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRK 157
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEI 182
G E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 158 GAVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGI 214
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 215 IEVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIG 274
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
PGE + F T+ L+++ KF ++H++ + RP T +A MK+VP V K+R + ++E
Sbjct: 275 HPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYE 334
Query: 303 --AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
A+ + + + TE G ++G T Y+ V++ LG V+I
Sbjct: 335 ELAYEIHSDYLNSIASVITTEYGRKG-SVIGRTLNYIPVVIRQNVE-LGKRINVRINEAS 392
Query: 361 RWSVFGEVI 369
+ + GE I
Sbjct: 393 FYDLRGEPI 401
>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 421
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 23/369 (6%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C ++ +P VV P+ S ++G Q + ++V+VVE + K +V L
Sbjct: 72 VVAGCLASAEPAVVVSLAPEAS----------VIGPQSVQKIVDVVENS-KQRQVYLNED 120
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
K L PKV K + ILPI GC G C +C TK AR L SY +V VR +
Sbjct: 121 KPLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRK 176
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEI 182
G E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 177 GAVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGI 233
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 234 IEVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIG 293
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
PGE + F T+ L+++ KF ++H++ + RP T +A MK+VP V K+R + ++E
Sbjct: 294 HPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYE 353
Query: 303 --AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
A+ + + + TE G ++G T Y+ V++ LG V+I
Sbjct: 354 ELAYEIHSDYLNSIASVITTEYGRKG-SVIGRTLNYIPVVIRQNVE-LGKRINVRINEAS 411
Query: 361 RWSVFGEVI 369
+ + GE I
Sbjct: 412 FYDLRGEPI 420
>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
Length = 401
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 23/369 (6%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C ++ +P VV P+ S ++G Q + ++V+VVE + K +V L
Sbjct: 52 VVAGCLASAEPAVVVSLAPEAS----------VIGPQSVQKIVDVVENS-KQRQVYLNED 100
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
K L PKV K + ILPI GC G C +C TK AR L SY +V VR +
Sbjct: 101 KPLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRK 156
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEI 182
G E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 157 GAVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGI 213
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 214 IEVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIG 273
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
PGE + F T+ L+++ KF ++H++ + RP T +A MK+VP V K+R + ++E
Sbjct: 274 HPGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYE 333
Query: 303 --AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
A+ + + + TE G ++G T Y+ V++ LG V+I
Sbjct: 334 ELAYEIHSDYLNSIASVITTEYGRKG-SVIGRTLNYIPVVIRQNVE-LGKRINVRINEAS 391
Query: 361 RWSVFGEVI 369
+ + GE I
Sbjct: 392 FYDLRGEPI 400
>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
DSM 3091]
Length = 424
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 19/379 (5%)
Query: 1 MDTLIAKCKSA--KKPLVVAGC-VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGH 56
M T I K K+ K L++ GC V + L++ G +G ++D+V EVVE+ + G
Sbjct: 55 MITKIRKYKTEFPDKKLIIGGCMVEVDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGE 114
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
V + + K V IL I GC G CT+C T+ ARG L SY ++ +V
Sbjct: 115 VVHEYGKTRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEE 174
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ + G KE+ ++++DT +G D G + LLN + A +G +R+GM NP I
Sbjct: 175 AKDAVEHGCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIK 231
Query: 177 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
L E+ + ++ +++F+H+P+QSGS VL MNR++TL +++ +++ + +P M +
Sbjct: 232 NQLHEVIDAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEFRKEIPQMSL 291
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 295
ATDII G+P ET+EDFNQT+ L+KE K VHIS++ RPG + +K++ ++K RS
Sbjct: 292 ATDIIVGYPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAKSNHLKEIDHNIMKNRSH 351
Query: 296 ELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
+ V E Y E ++ + IT + G + VG+T Y V+V +G+
Sbjct: 352 RVNQVKTEVMLEKNKEY---ENTIQNVLITSKGSSGGY-VGYTDSYKNVIVDEAE--IGS 405
Query: 351 SALVKITSVGRWSVFGEVI 369
VKI R + + I
Sbjct: 406 FMDVKIIEGKRTYLLAQRI 424
>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
Length = 936
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 175/337 (51%), Gaps = 101/337 (29%)
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
A +P VR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV++LV R++TV+++
Sbjct: 34 AASIPLVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSE---- 89
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
GRDIG N+P LL A+VA LP + +N HL
Sbjct: 90 -----------GRDIGANIPALLRALVAALP----HRQKYNASN-----LHLTASGGNGC 129
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
HPCVY FLHV VQSG D+VL M REYT S+FR +VDTL LVP ET
Sbjct: 130 HPCVYLFLHVLVQSGRDSVLQGMKREYTFSEFRKIVDTLTRLVP--------------ET 175
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 307
GTPAA MK+VP+ VKKRSR LTS+FE+FTPY
Sbjct: 176 ----------------------------GTPAALMKRVPTLEVKKRSRSLTSLFESFTPY 207
Query: 308 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS---ALVKITSVGRWSV 364
GME V + ST + G S VKITSVGRWSV
Sbjct: 208 AGME-------------------------VGLCTSSTSSCTGPSWKQVNVKITSVGRWSV 242
Query: 365 F------GEVIKILNQVD-DKIASNRRISSQVRQDKC 394
E ++ +++D ++ + R+ S + Q +C
Sbjct: 243 TEENKLKDESVQRSHKLDWAQLGAPTRVQSPLSQTRC 279
>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 423
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 186/342 (54%), Gaps = 10/342 (2%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
L+ K +S K+ ++V GC+ + D+ SIV + ++ + + V T G V +
Sbjct: 59 LLKKLESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMS 118
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+K L K R+ I P++ GC+ +C++C+TK AR L S++ + ++ V+ +
Sbjct: 119 SLQKRDRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSV 177
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G E+ ++S+D GAYG D N+ +L+ I +G +RIGM NP + ++ E
Sbjct: 178 KSGAVEIDITSQDIGAYGADRKSNIALLMEKISR---IEGFFKVRIGMLNPERLAGYINE 234
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
A L + Y F H+P+QSGSD+VL +M R YT+ + VD L VPG+ I TD+I
Sbjct: 235 FASALGNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSYVPGISIETDMIV 294
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
G+P ETDEDF ++ ++K ++ +IS+F R T A +MK++ ++K+RS E+ S
Sbjct: 295 GYPTETDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKMKQLDQTLIKERSSEMYSAV 354
Query: 302 EAFTPYLGMEGRV--ERIWITEIAADGIHLVGHTKGYVQVLV 341
G+ G+ +RI + G+ + G T Y QV++
Sbjct: 355 RGIQH--GINGKFVGQRITALMTESTGVSINGRTDSYKQVVL 394
>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
Length = 406
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 184/336 (54%), Gaps = 21/336 (6%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
K + K +VVAGC+ L L+G+ R +++ E R+L +PA
Sbjct: 62 KYSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMPA 108
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
P ++ V + I GC G C+YC + RG L S VE +V ++T + G +E+
Sbjct: 109 AGRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGAREI 166
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+++DTGAYG D G LP L+ I L +G +R+GM NP I + L ++A +
Sbjct: 167 LLTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFND 223
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P VY F H+PVQSGSD +L M R YT S +R +V L + VPG+ ++TD I GFP ETD
Sbjct: 224 PRVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLRQEVPGITLSTDYIVGFPTETD 283
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP-Y 307
EDF T++ ++ + +V+I++F PRPGTPAA M+ +P + K+RSR LT + T Y
Sbjct: 284 EDFALTMDDLRSTRPLKVNITRFSPRPGTPAACMENLPFRIKKERSRALTQLHHGITSEY 343
Query: 308 L-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
+ GR + +TE G V Y V++P
Sbjct: 344 MRDSAGRRLSVLVTEEGKPGTS-VARDDCYHMVVIP 378
>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 198/368 (53%), Gaps = 24/368 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K +VV GC+P ++L +++ V I + E+ E L L R
Sbjct: 38 IKELKQYGKKIVVYGCLPSARKELLDMDVVPIATWE-----FEMAGEILN------LDRS 86
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + + V +PI GCLG CTYC T+ ARG + S + + ++ V+ + G
Sbjct: 87 PMDEVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQG 141
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 142 AVEIRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELID 198
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+P VY FLH+PVQSG D +L MNR Y + DF +V + P M ++TDII GFP
Sbjct: 199 AYSNPKVYKFLHLPVQSGDDEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFP 258
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--E 302
GE DE F T+ LIKE K ++I++F PRP TPA + K+ + VK S++LT++
Sbjct: 259 GENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMEN 318
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ M G+ ++ + G +L ++ Y V++ + ++G +++IT +
Sbjct: 319 MHKRFESMLGKEFKVIVPSRGKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKS 375
Query: 363 SVFGEVIK 370
+ G++++
Sbjct: 376 HLVGKILE 383
>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
14429]
gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
14429]
Length = 452
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 204/377 (54%), Gaps = 31/377 (8%)
Query: 13 KPLVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
K L+VAGC+ P +D+ +S G + ID EVV H K LP
Sbjct: 72 KRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAKYLP 128
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADG 124
P++ +++V +PI VGCLG C++C TK R G + SY ++ +V + ++ G
Sbjct: 129 NY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAVSKG 185
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+E++L+ ++ AYGRD G +L LL I+A++ DG M+R+GM P + + + +
Sbjct: 186 AREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDRLLD 243
Query: 185 VLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
V++ VY F HVPVQSGSD VL M R+Y++ FR +V + P +ATDII GF
Sbjct: 244 VVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFRDIVKRIRNAFPDATVATDIIVGF 303
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF-- 301
PGETDEDF +V LI+E +V+++++ RP T AA M++VP V K+RS+ T VF
Sbjct: 304 PGETDEDFWASVRLIEELGIDKVNLARYSRRPFTEAAYMEQVPEQVKKERSKIATDVFNR 363
Query: 302 ---EAFTPYLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
E ++G E +W ++E+ G + V + Y + V +G VK+
Sbjct: 364 VALERNKTFIGRE-----MWGIVSEVDFKGENYVVRSYNYKPIAVRKAD--IGAFVRVKV 416
Query: 357 TSVGRWSVFGEVIKILN 373
T +FG++++ N
Sbjct: 417 TDATSQRLFGQLLESEN 433
>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
Length = 431
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 175/306 (57%), Gaps = 11/306 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQ-GSRDLKELEG----VSIVGVQQIDRVVEVVEETLKG---H 56
I++ ++ LVV GC+PQ +D+ E + + + +I ++ ++ + KG
Sbjct: 60 ISEIGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKD 119
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ LL L++ ++R N + I I+ GC C+YC + ARG L S+ + +V
Sbjct: 120 RIELLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDD 179
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
V+ I++G +EVW++S+D G YG DI +LP LLN ++ ++P +R+GM NP +L
Sbjct: 180 VKKAISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPE--HFKIRVGMMNPFSVL 236
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
L ++ + + +Y LH+P+QS S+ LSAMNR +++ D ++ + +
Sbjct: 237 PILDDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDVEDIISRFRYRFGDLTLF 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII GFP ETD+DFN++V IKEY +++IS++ PRPGTPA + + S +V KRS+
Sbjct: 297 TDIIVGFPYETDDDFNKSVEWIKEYCPDKINISRYTPRPGTPAFNYRNIDSRIVAKRSKT 356
Query: 297 LTSVFE 302
L E
Sbjct: 357 LHKACE 362
>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
str. Marburg]
gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
marburgensis str. Marburg]
Length = 427
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 181/332 (54%), Gaps = 8/332 (2%)
Query: 13 KPLVVAGCVPQ-GSRDLKELEG-VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K LVVAGC+ + + L+ + G S +G Q+ R EVV +G R+ +
Sbjct: 72 KGLVVAGCMVEIDPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRITGFTSDVKVG 131
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+P+VR N + I+ I GC G+C+YC T+ ARG + SY + +V R I G +E+ L
Sbjct: 132 VPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAIEAGCREIQL 191
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
+++DT AYG D G L L+ I E+P G +R+GM +P +L L + E R
Sbjct: 192 TAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDGLVEAFRSEK 248
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
VYSFLH+PVQSGSD VL M R +T+ DFR +VD +P + IATDII G+P E ++D
Sbjct: 249 VYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRFRSRIPEISIATDIIVGYPTEGEDD 308
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLG- 309
F T L++E + +H+S++ RP ++ + ++ +++RS+ + + T
Sbjct: 309 FLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSLDEIDFRELRRRSKAVEELKGRITEEENR 368
Query: 310 -MEGRVERIWITEIAADGIHLVGHTKGYVQVL 340
+ G + I I E G +G T Y+ V+
Sbjct: 369 RLVGTTQNILIVERGRKG-GFIGRTDSYIPVV 399
>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 162/289 (56%), Gaps = 7/289 (2%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+PIN GC G C +C + ARG L S E +V ++R ++A G +E+ +SS DT AYG+D
Sbjct: 117 IPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGKREIRISSLDTAAYGKDT 176
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 202
G LP L+ I A DG MLR+GM P +E L ++ E P V+ FLH+PVQSG
Sbjct: 177 GYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEAYDDPKVFKFLHIPVQSG 233
Query: 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262
D VL+AMNREYT+ +F ++++ + P M I+TD+I G+ E D F+ T +LI++ +
Sbjct: 234 DDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHAENDRSFDLTCDLIRKVQ 293
Query: 263 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT 320
+++++F PR TP + P+ V+K + R + + + + G+VERI IT
Sbjct: 294 PEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRKIVSERFSALVGKVERILIT 353
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
E G +VG Y V++ + T +I S+ GE++
Sbjct: 354 EDGKPGT-MVGRDASYRPVVIRAPAEKY-TWHSARIIGYENTSLIGELV 400
>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
Length = 435
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 196/371 (52%), Gaps = 24/371 (6%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GHEVRLLHRKK 65
++V+GC+P+ + L I+GV + R+ + +E+ K G E RL R
Sbjct: 72 VIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGGE-RLEIRTS 130
Query: 66 LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++ +R+ +AD
Sbjct: 131 EPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIIEDIRSAVAD 190
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP +L L ++
Sbjct: 191 GCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFSVLPILDDLV 247
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ ++ LH+P+QS S +VL MNR + + ++ + + TDII GF
Sbjct: 248 DAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLSLFTDIIVGF 307
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 300
ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS +L V
Sbjct: 308 CDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRSHQLHKVCEQ 367
Query: 301 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E+ +G +GRV TEI ++ T Y V++ + G A VKIT
Sbjct: 368 IKIESKNEMIGWKGRVFVSKYTEIG----DVLTRTDSYRPVVISGSDLRPGEYAEVKITG 423
Query: 359 VGRWSVFGEVI 369
G+++
Sbjct: 424 AKPGYFLGKLV 434
>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 424
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 187/341 (54%), Gaps = 13/341 (3%)
Query: 12 KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
+K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 71 EKGLVVAGCMVE--IDPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERITGFTSDV 128
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +A G +E
Sbjct: 129 KVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGCRE 188
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L + E +
Sbjct: 189 IQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDGLVEAFK 245
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+ +P + IATDII G+P E
Sbjct: 246 SEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIVGYPTEE 305
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 307
EDF T +L++E K +H+S++ RP ++ + ++ +++RSR L + T
Sbjct: 306 REDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALEELKMRITEE 365
Query: 308 LG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ G + I + E G +G T Y+ V V TG
Sbjct: 366 ENRRLVGSFQEILVVERGRKG-GFIGRTGSYIPV-VTETGE 404
>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
Length = 416
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 204/382 (53%), Gaps = 40/382 (10%)
Query: 19 GCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-------------RKK 65
GCVP S + E + + I ID+ + + E L + +LL R +
Sbjct: 42 GCVPASSAE--EADAILINTCVVIDKTEQHMYERLDLYAGKLLFVTGCLPPVAADVLRTR 99
Query: 66 LPALDL--PKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESL 113
P + + P + + ++E+ L I GC G CTYC T+ ARG L S++ E +
Sbjct: 100 YPKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAEDI 159
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171
V + ++++ G E+ L+++DT ++G R+ G+ LP LL + A +P G+ M+RIGM N
Sbjct: 160 VRQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPDLLRQLCA-IP--GNFMIRIGMAN 216
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P +L L + + L+ P ++ FLH+PVQSGSD+VL M R YT + + + + P
Sbjct: 217 PDTLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRARKAFP 276
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
++I+TD I GF GETDED ++ I+ + +V+I++F RP TPAA+MKK+P + K
Sbjct: 277 EIRISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKMKKIPEPIKK 336
Query: 292 KRSRELTS----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+RSRELT V++A + G + +TE+ G + + Y +++
Sbjct: 337 QRSRELTDAANEVYDANNE--ALIGHIMTAVVTEVVKAG-SVTARDRTYQNIVIMENLE- 392
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
+GT VKIT R + GE I
Sbjct: 393 IGTEITVKITGHRRHYLIGERI 414
>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
subterraneum]
Length = 432
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 199/372 (53%), Gaps = 20/372 (5%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K S L+VAGC+ G + + + V+ V R + V ++GH K
Sbjct: 71 IKKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK 128
Query: 65 KLPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
L LP++R+N + I+P++ GC C++C +R SY V ++V VR + +
Sbjct: 129 ----LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNE 184
Query: 124 GVKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
G +EVWL+S+D G+YG + G NL P L+ ++ + +G RIGM NP ++ L+++
Sbjct: 185 GCREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKL 241
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ +Y F+HVPVQSGSD VL MNR +++ F VV+ P + ++TD+I G
Sbjct: 242 VKAYSGEKIYKFIHVPVQSGSDKVLKDMNRGHSVQLFYHVVEAFRRRFPSITVSTDLIVG 301
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-- 300
+P ETDEDF QT+ L+++ + V++S+++PRPGTP +K +P VV +R EL +
Sbjct: 302 YPTETDEDFEQTLKLVEKTRPAVVNVSRYFPRPGTPGEGLKTLPHHVVARRVSELNDLLS 361
Query: 301 ---FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
E+ +LG G V I E+ G ++G Y +++ + LG ++
Sbjct: 362 KIQLESNEHWLGWVGEV---LINEVGKKG-KMMGRNFAYRPIVLDAPRESLGRFVEAEVV 417
Query: 358 SVGRWSVFGEVI 369
V + + G V+
Sbjct: 418 DVEKNYLLGRVL 429
>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
Length = 435
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 190/370 (51%), Gaps = 22/370 (5%)
Query: 15 LVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVV--------EETLKGHEVRLLHRK 64
++V+GC+P Q L I+GV I R+ E++ E G + L +
Sbjct: 72 VIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAGGHLELRTSE 131
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L L++P+ R N + I I+ GC AC+YC KHARG L S+ E +V +R+ +ADG
Sbjct: 132 PLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVKDIRSAVADG 191
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +L L + +
Sbjct: 192 CREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSVLPILDGLVD 248
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V+ LH+P+QS S +VL MNR + + ++ + + TDII GF
Sbjct: 249 AFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSLFTDIIVGFC 308
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + +RS EL V E
Sbjct: 309 DETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVQRSHELHKVCEQI 368
Query: 305 -----TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+G +GRV TEI ++ T Y V++ + G A V+IT
Sbjct: 369 KLGSKQEMIGWKGRVFVSKYTEIG----DVLTRTDAYRPVVISGSDLKPGEYANVEITGA 424
Query: 360 GRWSVFGEVI 369
G +I
Sbjct: 425 KPGYFLGRII 434
>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
Length = 429
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 177/303 (58%), Gaps = 20/303 (6%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
+K + LPI GCLG C++C K+AR L SY + + V+ ++ GV E+ ++ +DT
Sbjct: 135 DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNTVKELVGKGVVEIEITGQDTA 194
Query: 137 AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC-VYS 193
+YG D+ LP LL + G+ M+RIGM NP + L E+ EV+++ +Y
Sbjct: 195 SYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDTLANILDELIEVIKNSAHIYR 251
Query: 194 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 253
FLH+P+QSGSD VL M R+YT+ ++R +V L + +P + IATDII G PGE +EDF Q
Sbjct: 252 FLHIPLQSGSDKVLRIMRRKYTVDEYREIVKILRKKIPEISIATDIIVGHPGEEEEDFEQ 311
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-- 311
T+++IKE KF +VH + + RP T +A ++++P++V K+R L + E +G+E
Sbjct: 312 TLDIIKELKFERVHPAVYSIRPNTYSASLRQIPTSVKKERMLRLLKIIEN----VGLEVH 367
Query: 312 ----GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVKITSVGRWSVFG 366
G+V +ITE + I G T Y+ V++ S + G ++IT+ + + G
Sbjct: 368 RKYLGKVLDTFITEHSNTWI---GRTLNYIPVIIFSENTLDFGKHVKIQITNATFYDLRG 424
Query: 367 EVI 369
++
Sbjct: 425 VIV 427
>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
Length = 418
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 171/297 (57%), Gaps = 10/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +VE + + R ++ G +E+ ++ +DTG YG
Sbjct: 125 VGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHAGAREIRITGQDTGVYG 184
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L +LL+ I E+ +G +R+GM NP + +E+AEV H +Y+FLH
Sbjct: 185 WDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREELAEVFAAHDELYNFLHA 242
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ VV+T + + ++TD I GFP ETD DF Q++ L
Sbjct: 243 PVQSGSDDVLGDMRRQHQVSEYVEVVETFDDYLDEWTLSTDFIVGFPTETDRDFEQSMAL 302
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVE 315
++E + ++++++F RPGT AA MK + V K+RS+ ++ + Y M G V
Sbjct: 303 LRETRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMDVMDEVYESMVGDVR 362
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
+ +TE D LVG+ + Y QV +P N LG + ++T GE++
Sbjct: 363 SVLLTEDGTDD-SLVGYDRAYRQVAIPDAQNQGVELGDTVDAEVTGHNTVYALGELV 418
>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
Length = 417
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 168/289 (58%), Gaps = 5/289 (1%)
Query: 13 KPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
K +V+AGC+P+ + + E+ +I + R+ EV++ + G+++ LL + ++
Sbjct: 66 KTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEIDKTRC 124
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
K R + I+ I GC G CT+C T+ ARG L S++ + +V ++ + G E+ L+
Sbjct: 125 EKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYVEIQLT 184
Query: 132 SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 191
S+DTGAYG DIG NLP LL I A +G +R+GM NP L ++ +
Sbjct: 185 SQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAFESEKI 241
Query: 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 251
Y FLH+PVQSG + VL M R++ + ++ VV + + I+TDII GFP E++E F
Sbjct: 242 YKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAFRKRFDDVMISTDIIVGFPTESEEAF 301
Query: 252 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
++++L++ + V+++++ PR GTPA R++ +P + K RSR +T +
Sbjct: 302 YKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRDMPDWIKKDRSRAVTRL 350
>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
Length = 404
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 197/368 (53%), Gaps = 24/368 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K +VV GC+P ++L +++ V I + E+ E L L R
Sbjct: 56 IEELKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRS 104
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + + V +PI GCLG CTYC T+ ARG + S + E ++ V+ +
Sbjct: 105 PMDEVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQR 159
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 160 AVEIRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELID 216
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+P VY FLH+PVQSG + +L MNR Y + DF +V + P M ++TDII GFP
Sbjct: 217 AYSNPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFP 276
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--E 302
GE DE F T+ LIKE K ++I++F PRP TPA + K+ + VK+ S++L ++
Sbjct: 277 GENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMEN 336
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ M G+ ++ + G +L ++ Y V++ + ++G +++IT +
Sbjct: 337 MHKRFESMLGKEFKVIVPSRGKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKS 393
Query: 363 SVFGEVIK 370
+ G++++
Sbjct: 394 HLVGKILE 401
>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
Length = 429
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 199/374 (53%), Gaps = 37/374 (9%)
Query: 13 KPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEET-----LKGHEVRLLHRKK 65
K L+VAGC+ Q + K S+V Q ++ VE LKG R
Sbjct: 74 KKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGERDR------ 127
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
++ +K + LPI GCLG C++C K+AR L SY + + V ++ GV
Sbjct: 128 ----NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNTVEELVGKGV 183
Query: 126 KEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
E+ L+ +DT +YG D+ LP LL + G+ M+RIGM NP + L E+
Sbjct: 184 VEIELTGQDTASYGLDLYGKQKLPHLLEELDR---IKGNFMIRIGMMNPDTLANILDELV 240
Query: 184 EVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
E++++ +Y FLH+P+QSGSD VL M R+YT+ ++R ++ TL + +P + IATDII G
Sbjct: 241 EIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDEYREIIKTLRKKIPEISIATDIIVG 300
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
PGE +EDF QT+++IKE KF ++H + + RP T +A +++VP++ K R L + E
Sbjct: 301 HPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNTYSASLRQVPTSDKKIRMLRLLKIIE 360
Query: 303 AFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVK 355
+G+E G++ ++TE + I G T Y+ V++ S + G +
Sbjct: 361 D----VGLEIHRKYLGKILDTFVTEYSNTWI---GRTLNYIPVIIFSNNTLNFGDHVKTQ 413
Query: 356 ITSVGRWSVFGEVI 369
IT+ + + G ++
Sbjct: 414 ITNATFYDLRGVIV 427
>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 197/368 (53%), Gaps = 24/368 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K K +VV GC+P ++L +++ V I + E+ E L L R
Sbjct: 38 IEELKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRS 86
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + + V +PI GCLG CTYC T+ ARG + S + E ++ V+ +
Sbjct: 87 PMDEVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQR 141
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 142 AVEIRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELID 198
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+P VY FLH+PVQSG + +L MNR Y + DF +V + P M ++TDII GFP
Sbjct: 199 AYSNPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFP 258
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--E 302
GE DE F T+ LIKE K ++I++F PRP TPA + K+ + VK+ S++L ++
Sbjct: 259 GENDESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMEN 318
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ M G+ ++ + G +L ++ Y V++ + ++G +++IT +
Sbjct: 319 MHKRFESMLGKEFKVIVPSRGKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKS 375
Query: 363 SVFGEVIK 370
+ G++++
Sbjct: 376 HLVGKILE 383
>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
Length = 423
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 198/352 (56%), Gaps = 25/352 (7%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 65
K K +V+AGC+P+ ++ E+ VS V ID VV+ V LKG + L+ R
Sbjct: 64 KRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRTD 120
Query: 66 LPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ ++ V+R + I+ I GC G C++C T+ ARG L S+ ES+V VR +
Sbjct: 121 VDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCVE 180
Query: 123 DGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+G KE+ ++S+DTGAYG D G LP LL AI +E+ +G +R+GM NP +E L +
Sbjct: 181 NGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLDD 237
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ +Y F+H+PVQSG + VL MNR++++ DF VV + ++TD+I
Sbjct: 238 LLNAFESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAFRRRFDDVMVSTDVIV 297
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFP ET+E F +T LIK + V+I++F RP TPA ++K++ +VK+RSR+LT +
Sbjct: 298 GFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYKLKEIHGWIVKERSRKLTELA 357
Query: 302 EAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+ +G++ G+ R+ IT+ +G L Y V+V GN+
Sbjct: 358 RS----IGLKRNRRFIGKRLRVLITKNGKNGTKL-ARADSYRPVVV-REGNI 403
>gi|171186225|ref|YP_001795144.1| RNA modification protein [Pyrobaculum neutrophilum V24Sta]
gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Pyrobaculum neutrophilum
V24Sta]
Length = 415
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 176/304 (57%), Gaps = 17/304 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
V + P+ VGCLG CT+C TK+ RG G S + + +V VR +A G +EV+L+ +D
Sbjct: 116 VYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARGAREVYLTGQDVI 175
Query: 137 AYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCV 191
YG D G NLP LL I+ E+ +G +RIGM+ P + ++ +V+ R V
Sbjct: 176 TYGFDAGWRGGWNLPDLLERILREV--EGDYRVRIGMSEPWVFAKFADQLLDVVKRDGRV 233
Query: 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 251
Y + H+PVQSGSD VL AM R YT+ ++R +V + + IATDII GFPGE +E+F
Sbjct: 234 YRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDIIVGFPGEAEEEF 293
Query: 252 NQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGM 310
++V L++E KF +VH+++F PRP T AA M ++VP A K+RS+ L+ V
Sbjct: 294 VESVKLVEELKFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEVAARVALLRNG 353
Query: 311 E--GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSVGRWSVFG 366
E GR E + + E+ D +VG Y QV+V + ++G V+I G ++G
Sbjct: 354 ERVGRREVVLVDEV--DHGLVVGRASDYRQVVVKRGAGDELMGRFVDVRIAGAGPVYLYG 411
Query: 367 EVIK 370
E+++
Sbjct: 412 EILE 415
>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 424
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 187/332 (56%), Gaps = 21/332 (6%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHRK 64
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 62 KREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDKA 120
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V + G
Sbjct: 121 EFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAG 178
Query: 125 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
+E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 179 YREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDELI 235
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII GF
Sbjct: 236 NAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGF 295
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
P ET+E F ++ LIKE + V+I+++ R GTPAAR++ +P + K+RSR+LT +
Sbjct: 296 PTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMRK 355
Query: 304 FTPYLGME------GRVERIWITEIAADGIHL 329
+G+E G+ R+ +T+ +G +L
Sbjct: 356 ----IGLENNKRFVGKKLRVLVTKEGKNGRNL 383
>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
Length = 433
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 198/369 (53%), Gaps = 19/369 (5%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGHEVRLLHR 63
+VVAGC+P+ + ++ I+GV I R+ EV+ +T + +
Sbjct: 69 VVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQALHVFSH 128
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+ +++P++R N + I ++ GC AC+YC + RG L S+ +S+V +R +A+
Sbjct: 129 EPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVEDIRQGVAE 188
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G +E+WL+S+D YG DIG+ LP LL I ++P G +R+GM NP +L L+E+
Sbjct: 189 GCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVLPILEELL 245
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ +Y +H+PVQS S+ VL MNR +++ + V+++ + + + TDII GF
Sbjct: 246 HAFENDKIYKLVHLPVQSASNDVLKRMNRFHSIEEADLVINSFRDRFDDLTLFTDIIVGF 305
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
PGE + DF T+ +K+ K +++IS++ PRP T A + + S +V +RS EL +V E
Sbjct: 306 PGENEADFVTTLEWVKKQKPEKINISRYTPRPHTKALEYRNIDSRIVVQRSNELHAVCEE 365
Query: 304 FTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ M G R++I+ E G L+ T Y V++P + + G+ V+I
Sbjct: 366 VKTGVRENMMGWQGRVFISKEAKVKG--LMARTASYKPVVIPESSAVPGSFCDVEIFDAT 423
Query: 361 RWSVFGEVI 369
G V+
Sbjct: 424 PGYFLGRVV 432
>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 405
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 187/332 (56%), Gaps = 21/332 (6%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHRK 64
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 43 KREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDKA 101
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V + G
Sbjct: 102 EFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAG 159
Query: 125 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
+E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 160 YREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDELI 216
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII GF
Sbjct: 217 NAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGF 276
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
P ET+E F ++ LIKE + V+I+++ R GTPAAR++ +P + K+RSR+LT +
Sbjct: 277 PTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMRK 336
Query: 304 FTPYLGME------GRVERIWITEIAADGIHL 329
+G+E G+ R+ +T+ +G +L
Sbjct: 337 ----IGLENNKRFVGKKLRVLVTKEGKNGRNL 364
>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
Length = 430
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 35/366 (9%)
Query: 15 LVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLLHRKKLPA 68
L+VAGC +P+ RDL+ E + I+ R+ E E L G
Sbjct: 86 LIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGSG----------- 134
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
++ R+ ++ I+ GCLG+C+YC + ARG L S TV+ + VR + +G EV
Sbjct: 135 ----RMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRLKEGAVEV 189
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+S+D AYG D+G +LP L++A VAE+ +G +R+GM NP + L+E+
Sbjct: 190 QLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEELIRSYDD 246
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P VY FLH+PVQSGS VL +M R YT DF ++ L PG+ + TD+I G PGE +
Sbjct: 247 PKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSMAARLRAAFPGLTLYTDVIAGHPGERE 306
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT--- 305
EDF T LIK+ + +V+++ + RPGT A+R+K +PS + K RSR +T +++
Sbjct: 307 EDFAATEELIKKAEPDKVNVTMYSSRPGTEASRLKDMPSRLKKDRSRRMTRLWKEIAGRR 366
Query: 306 --PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
YLG E + +TE+ G ++ + Y +++V + LG+ KI +
Sbjct: 367 NGRYLGEEIIAQ---VTEMGRGGT-VMARSANYRKIVV-NEPLPLGSVHRFKIVRTTPFY 421
Query: 364 VFGEVI 369
+ GE I
Sbjct: 422 LKGEAI 427
>gi|195098944|ref|XP_001997957.1| GH23519 [Drosophila grimshawi]
gi|193891550|gb|EDV90416.1| GH23519 [Drosophila grimshawi]
Length = 214
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 118/160 (73%)
Query: 210 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269
M REY DF VVD L VPG+ IATDIICGFP ET++DF +T+ L ++Y+FP + I+
Sbjct: 1 MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFIN 60
Query: 270 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 329
QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G EG++ + +TEI+ D +H
Sbjct: 61 QFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHY 120
Query: 330 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
VGH K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 121 VGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 160
>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
Length = 418
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 194/374 (51%), Gaps = 41/374 (10%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEV 58
M I + S K LVVAGC+ L S++G Q ++ VV+ VE +
Sbjct: 56 MKKRIKELVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDS 110
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
R++ P LPKV + ++PI GC G C +C TK AR L SY++ ++ V+
Sbjct: 111 RVVEIGSKPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQ 169
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ G KE+ L+ +DT AYG D+G + P L+ I + +G M+R+GM P +
Sbjct: 170 ESVRRGAKEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAM 226
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
L EI E HP VY F H+PVQSG+D VL M R+YT+ +F+ +V + +P I
Sbjct: 227 RRLDEIIEAWSHPKVYKFFHIPVQSGNDRVLRLMGRKYTVEEFKALVKEIRSRIPQSNIT 286
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TD+I G PGE ++ F T++L++E KF ++HI+ + RP T ++ M +VP V ++R +E
Sbjct: 287 TDVIVGHPGEDEDAFKDTLDLMRELKFERIHIAMYSLRPNTRSSMMPQVPGDVKRRRLKE 346
Query: 297 LTSVFEAFT-----PYLGMEGRV---ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S++E + Y+G E RV ER G ++ T+ Y+ V
Sbjct: 347 AVSLYEELSLEVHKKYVGREMRVLALER-------GKGESVLARTENYIPV--------- 390
Query: 349 GTSALVKITSVGRW 362
++ + +GRW
Sbjct: 391 ----VLDMVELGRW 400
>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
Length = 458
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 24/370 (6%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GHEVRLLHRKK 65
++V+GC+P+ + L I+GV + R+ ++ +E+ K G E RL R
Sbjct: 72 VIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGGE-RLEIRTS 130
Query: 66 LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++ +R+ +AD
Sbjct: 131 EPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEILEDIRSAVAD 190
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP +L L ++
Sbjct: 191 GCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFSVLPILDDLV 247
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ ++ LH+P+QS S +VL MNR + + ++ + + TDII GF
Sbjct: 248 DAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVNEIITKFRARFEDLSLFTDIIVGF 307
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 300
ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS +L V
Sbjct: 308 CDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRSHQLHKVCEQ 367
Query: 301 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E+ +G +GRV TEI ++ T Y V++ + G V+IT
Sbjct: 368 IKIESKNEMIGWKGRVFVSKYTEIG----DVLTRTDSYRPVVISGSDLRPGQYDEVEITG 423
Query: 359 VGRWSVFGEV 368
G+V
Sbjct: 424 AKPGYFLGKV 433
>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 441
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 167/302 (55%), Gaps = 22/302 (7%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C ++ +P V P+ VS V +D VE +G ++ R
Sbjct: 78 VVAGCMASAQPYTVKRIAPKAVL-------VSTYNVHLVDIAVE------RGLDLLTPPR 124
Query: 64 KKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+K L P R R K E+ PI GCLG C++C TK AR + S VE++V VR +
Sbjct: 125 EKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVKLVREL 183
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ G E+ L+ +D YG D+ LP L+ ++ +G M+RIGM +P +
Sbjct: 184 VRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIEV---EGDFMVRIGMMSPDQLEPI 240
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E EV RHP V+ F+H+PVQSG D VL M R YT+ ++R +V + VPG+ IATD
Sbjct: 241 LDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIRNKVPGVMIATD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE +E F TV LI+E +F +VH++Q+ PR T AA + +VP V KKRS+ LT
Sbjct: 301 IIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAGLPQVPDPVKKKRSKRLT 360
Query: 299 SV 300
V
Sbjct: 361 EV 362
>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
Length = 420
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 168/299 (56%), Gaps = 12/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 125 VGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKELRVTGQDTGVYG 184
Query: 140 RDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFL 195
D LP LL I E+ DG +R+GM NP + +E+A V H +Y+FL
Sbjct: 185 WDTNQGESLLPELLERICTEI--DGEFRVRVGMANPKGVHGVREELARVFAEHDELYNFL 242
Query: 196 HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 255
H PVQSGSD VL+ M R++ + ++ VVDT E + ++TD I GFP ET+ DF Q++
Sbjct: 243 HAPVQSGSDDVLADMRRQHAVGEYVAVVDTFDEYLDYWTLSTDFIVGFPSETESDFQQSM 302
Query: 256 NLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT--PYLGMEGR 313
L++E + ++++++F RPGT AA MK + + K RS+ ++ + T Y M G
Sbjct: 303 ALLRETRPEKINVTRFSKRPGTDAADMKGLGGQIKKDRSKAMSELKMDVTGDAYEAMLGE 362
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRWSVFGEVI 369
+R+ +TE D LVG+ + Y QV+V G +G +ITS FGE I
Sbjct: 363 QKRVLLTEDGTDD-SLVGYDEAYRQVVVVDAQQRGLEVGDFVDCEITSHNTVYAFGEPI 420
>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
Length = 407
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 165/292 (56%), Gaps = 7/292 (2%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
I+ I GC+G CTYC + ARG L S S+ V+ + G KE++L+++DTGAYG D
Sbjct: 121 IISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGAKEIFLTAQDTGAYGID 180
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 201
IG+ LP L++ + L +G +R+GM NP I + L ++ + + P VY F H+P+QS
Sbjct: 181 IGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRIFQDPHVYKFAHIPIQS 237
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GSD +L M R YT S + +V L E +P + ++TD I GFP ETD DF T+ ++
Sbjct: 238 GSDRILRLMGRPYTESQYSDMVRRLRECIPDITLSTDYIVGFPEETDGDFEMTMEDLRAN 297
Query: 262 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME-GRVERIWI 319
K +V+I++F PRPGT AA+M +P A+ K+RSR LT + T Y+ GR + +
Sbjct: 298 KPLKVNITRFSPRPGTVAAKMDDLPMAIKKERSRALTRLHHEITSAYMRSSIGRRLSVLV 357
Query: 320 TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371
TE G V Y V++P+ G VKI + G+ I+I
Sbjct: 358 TEEGKPG-SSVARDDSYHMVVIPAALP-PGARLDVKICGASTTYMIGKPIEI 407
>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
4184]
Length = 415
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 183/313 (58%), Gaps = 19/313 (6%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKE 127
LPK R + +P+ VGCLG CT+C TK+ RG G S + +V ++ +A G +E
Sbjct: 108 LPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKGARE 166
Query: 128 VWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
++L+ +D YG D G LP LL+ I+ E+ +G +RIGM+ P + + ++
Sbjct: 167 IYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVDQLL 224
Query: 184 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATDIIC 241
+++ R VY + H+PVQSGSD VL AM R+YT+ ++R ++ + EL + IATDII
Sbjct: 225 DIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGLIRRIRRELGDNVFIATDIIV 284
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 300
GFPGET+EDF +TV L++E +F ++H+++F PRP T AA M ++VP A K+RS+ L+ V
Sbjct: 285 GFPGETEEDFQETVKLVEELQFDKIHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEV 344
Query: 301 FE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKI 356
A G+ + + I E+ D +VG Y QV+V + +LG V+I
Sbjct: 345 AMRIAHLRNGAQVGKRDVVLIDEV--DHGLVVGRASDYRQVVVKRGAGDGLLGEFVNVRI 402
Query: 357 TSVGRWSVFGEVI 369
+ ++GE++
Sbjct: 403 AAASPVYLYGEIL 415
>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
Length = 411
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 168/292 (57%), Gaps = 19/292 (6%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQ---IDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ L+VAGC+P +L +E V VGV IDRV++ + + H L LP
Sbjct: 65 RRLIVAGCLPAAIPEL--IESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG- 119
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
++ I+ GCLGAC YC K ARG L S + V +I+ G E+
Sbjct: 120 --------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEIQ 171
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L+S+D GAYG DIG +LP LL+ +++++ DG+ M+R+GM NP +L+ L ++ + ++
Sbjct: 172 LTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKNE 228
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+Y F+H+P+QSGSD VL M R YT DF VV P + + TD+I GFPGE+D+
Sbjct: 229 KIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFRSRYPEISLTTDVITGFPGESDQ 288
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
DF T ++I+ + +V++++F RP T A M +P + K+RSR +T ++
Sbjct: 289 DFRMTEDVIRITQPDKVNVTRFSRRPHTLAFMMHDMPDRIKKERSRRVTELW 340
>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
Length = 418
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 198/374 (52%), Gaps = 25/374 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH-------- 56
I + K+ K +VVAGC+P+ ++ +++ + ++ + E++ ++ H
Sbjct: 62 INELKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEE 119
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
E+ KKL L + + LPI GCLG C+YC K ARG L SY E +V +
Sbjct: 120 EINKTLYKKLDYL------KPSLITPLPICEGCLGNCSYCIVKIARGKLISYPREKIVNK 173
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ +I GVK ++++++DT YG DIG NL LLN + +G ++R+GM + +
Sbjct: 174 AKELINKGVKCLFITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNVE 230
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
L E+ E ++ V FLH+P+QSG D +L MNR YT+ +F+ +VD V +
Sbjct: 231 PILDELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFRRKVRNLCFT 290
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS
Sbjct: 291 TDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEI 350
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
L + + YL + V + + +G G+T + +V G +G VKI
Sbjct: 351 LDKLRRELS-YLNNKKYVGKTMRVLVLDEG---KGYTDNF--KVVKFEGGEIGEFRKVKI 404
Query: 357 TSVGRWSVFGEVIK 370
T + + GE+ K
Sbjct: 405 TDAKTFGLRGEIEK 418
>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
Length = 450
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 193/373 (51%), Gaps = 37/373 (9%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 63
++A C +P +VA VP+ S ++ Q ++RV++ V+ G + +L
Sbjct: 90 VVAGCLVKARPGLVARLVPEAS----------LLAPQAVERVLDAVDALESGRRLVVLDG 139
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ +P++ V + I GCLG C++C TK AR + SY+ +V RVR +
Sbjct: 140 RR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREAVEK 198
Query: 124 GVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G +E+ L+ D YG D+ NL L+ AI+ ++ +G +R+GM P + +L
Sbjct: 199 GAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGDYRIRVGMMTPDQVEPYLDS 256
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ +V R VY + H+PVQSG D VL M R YT+S+++ + + P IATDII
Sbjct: 257 LLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATDIIV 316
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
G PGET E F TV L++E +F +VH++Q+ RP T AA M++VP +V K+RSR L +
Sbjct: 317 GHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSRILGKIV 376
Query: 302 EAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+G+E GR R +TE + + G Y +++P
Sbjct: 377 AE----IGLEINGSYVGRRVRALVTERSWREGSMTGRLDNYTPIILPYEER--------- 423
Query: 356 ITSVGRWSVFGEV 368
++GRW V+ EV
Sbjct: 424 --AMGRW-VYAEV 433
>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
Length = 404
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 161/287 (56%), Gaps = 7/287 (2%)
Query: 85 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 144
I GC G C+YC + RG + S +V R IA+G E++L+S+D+GAYG D GV
Sbjct: 123 IAEGCNGQCSYCIVRLVRGRIRSTPAPDIVEAARRAIAEGASELFLTSQDSGAYGLDTGV 182
Query: 145 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 204
LP L+ +I A LP G+ +RIGM NP I + L ++ +VL HP VY F H+PVQSGSD
Sbjct: 183 RLPTLIRSI-ASLP--GNFKVRIGMMNPFSIADILPDMVDVLNHPKVYRFAHIPVQSGSD 239
Query: 205 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264
+L M R YT ++ ++ L VPG+ +TD I GFP ET+ DF T+ ++ +
Sbjct: 240 RILKLMQRPYTEQEYSAIISRLRAGVPGITFSTDYIVGFPTETEADFRLTLEDLRTNRPL 299
Query: 265 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEI 322
+V+I++F PRPGTPAA M V K+RSR LT++ T + E G + ++E
Sbjct: 300 KVNITRFSPRPGTPAAAMPDVLERTKKERSRMLTALHHEVTSHDLKEAVGSRRSVLVSEK 359
Query: 323 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
G ++ Y V++ LGT A V+I++ + G I
Sbjct: 360 GKPGT-VIARDPSYNMVVI-EEDLPLGTVANVEISAAKTTYLIGRRI 404
>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
IC-167]
Length = 422
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 203/374 (54%), Gaps = 20/374 (5%)
Query: 5 IAKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 62
I K K L+VAGC+ + S ++ IV ++ + E+++ + E RL+
Sbjct: 61 IEKYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMV 119
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRT 119
R +PK + V ++PI VGCLG C+YC K+ RG +G S + + +
Sbjct: 120 R-------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAK 172
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+A G +E++L+ ++ AYG+D G +L LL A++ ++ +G ++R+GM P + +
Sbjct: 173 AVARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMI 230
Query: 180 KEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ +V+++ +Y F H+PVQSGSD VL M R+YT+ F+ V+ + IATD
Sbjct: 231 HRLIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLFKREVELIRRSFRNSFIATD 290
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE D DF ++V LI+E +VH++++ PRP T AA M++VP V K+RS L+
Sbjct: 291 IIVGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRPFTEAAYMRQVPDQVKKQRSSMLS 350
Query: 299 SVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
V A++ L G I+ I G L+ Y V++ + G+ LG+ +K+
Sbjct: 351 KVALEVAYSRNLEYVGGTYEGLISSIGFKGRGLMARLMDYRPVII-NEGD-LGSFVKIKV 408
Query: 357 TSVGRWSVFGEVIK 370
T ++ G++I+
Sbjct: 409 TGASSINLIGKIIE 422
>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
Length = 415
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 196/374 (52%), Gaps = 27/374 (7%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K+ K +V+AGC+P+ ++ +++G + ++ R E++++ ++ H +R
Sbjct: 60 INELKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRM 112
Query: 65 KLPALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
D+ K K + LPI GC+G C+YC K ARG+L SY E +V +
Sbjct: 113 PYIEEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKA 172
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +I G K + ++++DT YG DIG NL LLN + +G ++R+GM +
Sbjct: 173 KELINKGAKCLLITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNAEL 229
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ EV + V FLH+P+QSG D +L M R YT+ +F+ +V+ + + T
Sbjct: 230 ILDELIEVYKDDKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTT 289
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS L
Sbjct: 290 DIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEIL 349
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ--VLVPSTGNMLGTSALVK 355
+ + YL + V + I +G KGY +V G +G VK
Sbjct: 350 DKLRRELS-YLNNKKYVGKTMRVLILDEG-------KGYTDNFKVVKFEGGEIGEFRKVK 401
Query: 356 ITSVGRWSVFGEVI 369
IT + + GE+I
Sbjct: 402 ITDAKTFGLRGEII 415
>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
Length = 417
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 203/375 (54%), Gaps = 19/375 (5%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV 58
M + I + + K LVVAGC + + SI+G Q + ++++ VE G ++
Sbjct: 56 MKSRIKELRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKI 111
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
++ ++ P+V K + I+PI GC G C++C TK AR L SY++ S+V V+
Sbjct: 112 FSINAERSEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVK 168
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ +G EV L+ +D AYG D+G + L LLN + L +G M+RIGM P
Sbjct: 169 EAVKNGAVEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFA 225
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
+ I E +R+P ++ FLH+PVQSG D VL MNR+YT+ +++ +V +P + I
Sbjct: 226 RDIDGILEAMRNPKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEARSKIPNINIT 285
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296
TDII G PGE + F T+ L+KE KF +VH++ + RP T +A MK+VP +V K+R R
Sbjct: 286 TDIIIGHPGEDENAFENTLELMKEIKFERVHLAMYSIRPNTRSALMKQVPDSVKKERMRI 345
Query: 297 LTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
++E + + E + ++ TE G ++G T Y+ V++ G +G V
Sbjct: 346 AYKLYEDISLSIHKEYLNKRTKVITTEEGKKG-SIIGRTLNYIPVIL--NGVEIGKWYDV 402
Query: 355 KITSVGRWSVFGEVI 369
+I + + G V+
Sbjct: 403 EIIDYSFFDLRGTVV 417
>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
Length = 423
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 165/298 (55%), Gaps = 10/298 (3%)
Query: 8 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 65
CK++KK L+V GC+ L ++ SIV + + E LKG + LL ++
Sbjct: 64 CKASKK-LIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
P L V F ++PI GCLG CT+C TK AR L S +S++ + G
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+WL++ D AYG++IG+ LP LL ++ LP + +R+GM +P E + +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+R P V+ F H+P+QS SD VL M R YT S+F +V+ + + IATD++ GFPG
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRKAFNDPTIATDVMVGFPG 295
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
E ++DF T+ ++E F +VH++ + PRP T ARM +V V +R + +V EA
Sbjct: 296 EEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARMPQVREDVKSRRVKRAMNVIEA 353
>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
Length = 414
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 198/368 (53%), Gaps = 17/368 (4%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHR 63
I + K+ K +VVAGC+P+ ++ +++G + ++ + ++++ +K G V L
Sbjct: 61 INELKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLED 118
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
K L + + + LPI GCLG CTYC K ARG+L SY E +V + +I
Sbjct: 119 DKSLHKKLDYIT-SSLITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKK 177
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G K ++++++DT YG D NL LLN + +G ++R+GM + + E + E+
Sbjct: 178 GTKCIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELI 234
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
EV + V FLH+P+QSG D +L M R YT+ +F+ +V+ + V + TDII GF
Sbjct: 235 EVYKTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEIVNEFRKKVKNLCFTTDIIVGF 294
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
PGET+E F T+N++KE K +H +++ R GT AA+MK+V + + K+RS L +
Sbjct: 295 PGETEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKLRRE 354
Query: 304 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ--VLVPSTGNMLGTSALVKITSVGR 361
+ Y+ + + + T I +G KGY + +V G +G VKI
Sbjct: 355 LS-YINNKKYIGKKLKTLILEEG-------KGYTENFKVVKFEGGSIGNFKKVKIVDAKT 406
Query: 362 WSVFGEVI 369
+ + G++I
Sbjct: 407 FGLVGKII 414
>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
17230]
gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
17230]
Length = 426
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 161/288 (55%), Gaps = 6/288 (2%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+P+ GCL C++C K AR HL S +E++V V+ VI+ G E+ ++++D YG DI
Sbjct: 135 IPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAIEIEITAQDLSVYGYDI 194
Query: 143 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 200
LP LL +I+ D ++RIG NP ++ +L +LR P VY +H+PVQ
Sbjct: 195 YGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIAILRDPRVYKHVHIPVQ 252
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
SG++ VL AMNR++ + F ++ L + + G+QIATDII G PGE +E F +V LI E
Sbjct: 253 SGNNRVLEAMNRKHGVELFLDIISELRKKIEGIQIATDIIVGHPGEDEEAFMDSVKLITE 312
Query: 261 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIW 318
+VHI+++ PRP T ++ MK++P + K RS + ++E + E G + +W
Sbjct: 313 NYIDRVHIARYSPRPLTRSSLMKQIPDPIKKSRSSYIEKIYEVVAYEVNREYIGSIAEVW 372
Query: 319 ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
ITEI + +G Y V++ LG A V+I + + G
Sbjct: 373 ITEIDSRRNIAIGRLFNYRPVVLDRGPEALGRKAFVEIRDATFYDLRG 420
>gi|294102364|ref|YP_003554222.1| MiaB family RNA modification protein [Aminobacterium colombiense
DSM 12261]
gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
DSM 12261]
Length = 440
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 195/376 (51%), Gaps = 20/376 (5%)
Query: 12 KKPLV-VAGCVPQ--GSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
KKP V V GC+ Q GS + V +VG + I + E +E + G V LL
Sbjct: 71 KKPFVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMAGERVSLLDEDSRA 130
Query: 68 ALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+DL P R N + + I GC CTYC + RG S E ++ +R ++ DG
Sbjct: 131 FVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSRFPEDILVEIRGLVEDG 190
Query: 125 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
VKE+ L ++ +YG+D G LL + A DG ++R ++P + +I
Sbjct: 191 VKEITLLGQNVNSYGQDFKNGYTFSSLLRDVAA---IDGLPLIRFVTSHPK---DFTPDI 244
Query: 183 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
EV+ HP + +++P+QSGSD +L MNR+YTL+ +R V + +P + + +D+I
Sbjct: 245 VEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNALPEVGLTSDLIV 304
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF +V + E+++ VH + + PR GT A+ M+ ++ V KR + +V
Sbjct: 305 GFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQDVKMKRLNTVNAV 364
Query: 301 FE--AFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKIT 357
A G+ G+ +I I + A G LV G T G V++ T +G ALV IT
Sbjct: 365 QSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTEEFIGRFALVSIT 424
Query: 358 SVGRWSVFGEVIKILN 373
S W + GEVI I++
Sbjct: 425 SAENWCLHGEVISIID 440
>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
768-28]
gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
768-28]
Length = 452
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 199/373 (53%), Gaps = 29/373 (7%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KKLPA 68
K L+V GC+ + + ++ + V E ++E + G ++ K LP+
Sbjct: 72 KRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKYLPS 129
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGV 125
P+ +++V +PI VGCLG C++C TK R G + SY + + V ++ G
Sbjct: 130 Y-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVSRGA 186
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+E++L+ ++ AYGRD G +L LL I+ ++ DG M+R+GM P + + + ++
Sbjct: 187 REIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRLLDI 244
Query: 186 LRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++ VY F H+PVQSGSD +L+ M R+Y++S F+ +V + + P I TDII GFP
Sbjct: 245 VKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFKDIVTRIRRVFPDATIVTDIIVGFP 304
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 301
GETDEDF +V LI+E +V+++++ RP T AA M++VP + K+RS+ T +F
Sbjct: 305 GETDEDFWASVRLIEELSIDKVNLARYSRRPFTEAAYMEQVPEQIKKERSKVATEIFNKV 364
Query: 302 --EAFTPYLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
E P++G E +W +EI G + + + Y + V +G VK+
Sbjct: 365 ALERNKPFIGKE-----MWGITSEIDFRGENYIVRSYNYKPIAVKKAD--IGAFVKVKVM 417
Query: 358 SVGRWSVFGEVIK 370
+ G++++
Sbjct: 418 DATSHRLLGQLLE 430
>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
MS2]
Length = 448
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 163/295 (55%), Gaps = 11/295 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+ ++ + GC+G C+YC T+ ARG L S E ++ VR ++ G E+ L+ +D A+G
Sbjct: 151 IGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGAFEIQLTGQDVAAWG 210
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 199
D G LP LL AI E+P G +R+GM +P +L L + + ++ FLH+PV
Sbjct: 211 LDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDAYASEKMFRFLHLPV 267
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSDAVL M R Y +D +VD E P M I++D I GFPGETDE+F QT++L++
Sbjct: 268 QSGSDAVLERMQRGYRAADVIRIVDAFRERYPDMMISSDFITGFPGETDEEFRQTLDLLR 327
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTSVFEAFTPYLGMEGRVE 315
F +V+I+++ RPGTPAA +K +P + K RSR E +++ + GR
Sbjct: 328 RAAFVKVNITRYSRRPGTPAAALKDLPERIRKDRSRALLAEANRIYDRYNER--WMGRET 385
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 370
I TE A G V Y+ V++ LG S IT R V GE+++
Sbjct: 386 SIVATEKNAPG-STVCRNPCYLNVVI-KEDLPLGFSGRAVITRNRRHYVIGELVQ 438
>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying protein [Methanoplanus petrolearius DSM
11571]
gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
11571]
Length = 404
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 164/290 (56%), Gaps = 19/290 (6%)
Query: 88 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 147
GC+ C YC T+ ARG L S+ + ++ + +++ G E+ L+ +D AYG D G +LP
Sbjct: 125 GCVSRCAYCITRSARGRLRSFPEDKIIEEIERLVSAGAVEIQLTGQDLSAYGMDTGSSLP 184
Query: 148 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 207
LLN I + +G M+R+GM NP + E+++ ++SF H+PVQSGSD VL
Sbjct: 185 DLLNRINS---LEGEFMVRVGMMNPSTAIPLTDELSDAFLGEKIFSFAHLPVQSGSDKVL 241
Query: 208 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 267
S M R Y + DFR +V L + PG++I+TD I G+P ET+EDF +T+ L++E + +V+
Sbjct: 242 SDMKRGYQVQDFRNLVAELRKKDPGIRISTDFIVGYPTETEEDFLKTLALLEEIRPTKVN 301
Query: 268 ISQFYPRPGTPAARMKKVPSAVVKKRSRELT--------SVFEAFTPYLGMEGRVERIWI 319
I++F R GT AA++K +P + K+RSR LT SV E+F G+ + +
Sbjct: 302 ITRFSAREGTDAAKLKDIPDWIKKERSRALTIAANRLYDSVNESFI------GKDLDVIV 355
Query: 320 TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
TE G + K Y +++ + GT V+I S R + GE I
Sbjct: 356 TERKRAG-SCIARDKSYNNIVIEEELDA-GTRCRVRIVSHRRHYLIGERI 403
>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
Length = 403
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 169/292 (57%), Gaps = 7/292 (2%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ++ + GCLG+C+YC T+ ARG L S V +V +I++GV E+ L+ +D AYG
Sbjct: 117 VGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHEIQLTGQDVSAYG 176
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 199
D G NL LL A+ AE+ +G +R GM NP +L +L EI + ++ F+H+PV
Sbjct: 177 YDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFLSDKIFKFIHIPV 233
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VLS M R YT +DF +V + VP ++++TD+I GFP E++EDF +T+ ++K
Sbjct: 234 QSGSDRVLSDMGRGYTSADFERIVTEFRKKVPDIRVSTDLIVGFPTESEEDFKETLEMVK 293
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT-SVFEAFT-PYLGMEGRVERI 317
+V+I++F R TPAA K +P + K+RSR LT +V + + + GR+ +
Sbjct: 294 RVCPTKVNITRFSVRENTPAAEYKDMPDWIKKERSRALTIAVHDIYNRNNESLIGRIIPV 353
Query: 318 WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+TE G ++ + Y ++V + +G S +IT + GE I
Sbjct: 354 SVTEKKKAGT-VIARDRSYNNIVVMG-DHSIGESFDAEITGHRTHYLIGEKI 403
>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP6]
gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 437
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
I+ + GC G+C+YC ARG L S VE +V V + G E+ +S++DT A+G D
Sbjct: 152 IVNVADGCNGSCSYCIVSKARGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAFGSD 211
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 201
IG +L LL + E+P G MLR+GM NP + E + P +Y FLH+PVQS
Sbjct: 212 IGSDLAGLLETLT-EIP--GDFMLRVGMMNPDSARLIQNRLIEAFQSPKIYRFLHIPVQS 268
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GSD +L M R YT +F +V P + I TDII GFPGETD+DF ++++LI+
Sbjct: 269 GSDEILQRMGRVYTSDEFFELVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERL 328
Query: 262 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP-----YLGMEGRVER 316
+ +V+I++F PRPGT AA + +P + K RSRE+T ++ YL G+V
Sbjct: 329 QPDKVNITRFSPRPGTSAASLYDMPDRIKKDRSREMTRLWLEIAERRNRRYL---GKVLH 385
Query: 317 IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
+TE D + + Y +++P + LG +KI + + G
Sbjct: 386 ALVTECGRDKT-MKARSANYAGIVIPGALD-LGRWCQIKIMETTPYYLSG 433
>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 416
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 18/305 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
V +P+ VGCLG CT+C TK+ RG G S E +V +V+ +A G +E++L+ +D
Sbjct: 116 VYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVAMGAREIYLTGQDVI 175
Query: 137 AYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCV 191
YG ++ G NLP LL I+ E+ DG +RIGM+ P + +I +V+ R V
Sbjct: 176 TYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKFADQILDVVKRDRRV 233
Query: 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDED 250
Y + H+PVQSGSD VL M R+YT+ ++R +V + ++ IATDII GFPGE +ED
Sbjct: 234 YRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIATDIIVGFPGEEEED 293
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV-FEAFTPYL 308
F TV L +E +F ++H+++F PRP T AA M K+VP K+RS+ L+ + +
Sbjct: 294 FWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSKALSEISLKIAHVRN 353
Query: 309 GME-GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSVGRWSVF 365
G+ G + + I EI D +VG Y QV+V + +LG V+I + G ++
Sbjct: 354 GLRVGTKDEVLIDEI--DHGLVVGRASDYRQVVVKRGTHRELLGKFTNVRIVAAGPIYLY 411
Query: 366 GEVIK 370
EVI+
Sbjct: 412 AEVIE 416
>gi|448634564|ref|ZP_21674962.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
gi|445749537|gb|EMA00982.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
Length = 427
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I ++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICTDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLEYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
+++ L++E + ++++++F RPGT AA MK + K RS+E++ Y M
Sbjct: 300 ESMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
GR + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGRTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
I+
Sbjct: 419 PIE 421
>gi|448679050|ref|ZP_21689887.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
gi|445771148|gb|EMA22205.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
Length = 427
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N + ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVIGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
Q++ L++E + ++++++F RPGT AA MK + K RS+E++ Y M
Sbjct: 300 QSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
GR + + E D LVG+ + Y QV++ G +G + V ITS FGE
Sbjct: 360 VGRTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVEVAITSHNTVYAFGE 418
Query: 368 VIK 370
++
Sbjct: 419 PVE 421
>gi|448667822|ref|ZP_21686190.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
gi|445769143|gb|EMA20219.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 169/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V +H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELARVFAKHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
Q++ L++E + ++++++F RPGT AA MK + K RS+E++ Y M
Sbjct: 300 QSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
++
Sbjct: 419 PVE 421
>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
Length = 374
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 134/216 (62%), Gaps = 3/216 (1%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
++ + GC+G C+YC T+ ARG L S E++ VR ++ G E+ L+ +D A+G D
Sbjct: 83 VVQVASGCVGRCSYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAAWGLD 142
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 201
G +LP LL I AE+P G +R GM +P +L L+ + + ++ FLH+PVQS
Sbjct: 143 RGESLPDLLQEI-AEIP--GRFAVRPGMMHPATVLGILEPLVDAYESKKIFRFLHLPVQS 199
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GSD VL M R YT +D +VD E P M I++D I GFPGETDE+F+QT+ L++
Sbjct: 200 GSDTVLERMQRGYTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTLELLRRA 259
Query: 262 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
F +V+I+++ RPGTPAA +K +P + K RSR L
Sbjct: 260 AFVKVNITRYSRRPGTPAAALKDLPERIRKDRSRTL 295
>gi|448641016|ref|ZP_21677803.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
gi|445761541|gb|EMA12789.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
Length = 427
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
Q++ L++E + ++++++F RPGT AA MK + K RS+E++ Y M
Sbjct: 300 QSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
I+
Sbjct: 419 PIE 421
>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
Length = 447
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 189/365 (51%), Gaps = 14/365 (3%)
Query: 15 LVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDL 71
L+V+GC+ + + + S+V Q ++++VV+ ++V L+ + +
Sbjct: 85 LIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKSE---NKVVLIEGNRDTDFMPT 141
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P + + V + I GC+ C++C TK AR L SY ++ ++ ++ GVKE+ L+
Sbjct: 142 PPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEKGVKEIRLT 199
Query: 132 SEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
+D AYG D L L+N I+ ++ G +RIGM P +E + + E+ +
Sbjct: 200 GQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDNLLELYKDE 257
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
++ F H+PVQSG + +L MNR Y++ +++ + + + P ATDII G PGE +E
Sbjct: 258 RIFKFFHIPVQSGDNNMLKIMNRNYSIEEYKYLHNKIKSKYPNSLFATDIIVGHPGENEE 317
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP--Y 307
F TV L+KE +F +V+++Q+ RP T AA M++VP + KKRS L V + Y
Sbjct: 318 AFQNTVKLVKELRFERVYLAQYSIRPRTKAASMEQVPEVIKKKRSLMLNKVIKEIEEEIY 377
Query: 308 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 367
G+ + IT ++VG Y V + ++G ALV+I + + GE
Sbjct: 378 KNYIGKTYEVLITTHGFRENYVVGRLNNYFPVAIKGGDELIGKMALVRINKATYFDLRGE 437
Query: 368 VIKIL 372
VI+ L
Sbjct: 438 VIEEL 442
>gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049]
gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 427
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
Q++ L++E + ++++++F RPGT A MK + + K RS+E++ Y M
Sbjct: 300 QSMALLRETRPEKINVTRFSKRPGTDADNMKGLGGQIKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
I+
Sbjct: 419 PIE 421
>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
Length = 431
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 174/304 (57%), Gaps = 16/304 (5%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
+ V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG
Sbjct: 126 DGIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAKELRITGQDTG 185
Query: 137 AYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSF 194
YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V +H +Y+F
Sbjct: 186 VYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADVFAKHDKLYNF 243
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P ETDED ++
Sbjct: 244 IHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYPTETDEDHERS 303
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLG 309
++L++E + +V++++F RPGT AA +K + + K+RS+E++ V EA+ +G
Sbjct: 304 MDLLREIRPEKVNVTRFSKRPGTDAANLKGLGGTIKKERSKEMSEAKMDIVAEAYEEMVG 363
Query: 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFG 366
E V + + E D + Y Q++V + G G V++T+ FG
Sbjct: 364 TEQEV--LVVQEGTGDSVKC--RDAAYRQIIVQNASEHGLEPGDFTHVEVTAHQTVYAFG 419
Query: 367 EVIK 370
E ++
Sbjct: 420 EPVE 423
>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
6242]
gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
[Methanococcoides burtonii DSM 6242]
Length = 430
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 187/368 (50%), Gaps = 20/368 (5%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVRLLHRKKL 66
+VV GC+PQ + L+ I+GV I ++ +V +E + K V L+ +
Sbjct: 69 VVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVELITSEPE 128
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
L R N + I I+ GC +C YC ARG L S+ +S+V +R + +G +
Sbjct: 129 GFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRMAVDEGCR 188
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+WL+S+D G YG D V LP LL IVA +P G +R+GM NP + L ++ EV
Sbjct: 189 EIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPILDDLIEVF 245
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R +Y +H+P+QS SD VL MNR +++ + +V L E P + + TDII GF E
Sbjct: 246 RSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLREAFPDLTLFTDIIVGFSSE 305
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL-----TSVF 301
+D DFN T+ +K K +V+IS++ PRP T A + + + +V +RS +L T
Sbjct: 306 SDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRNLDTRIVVERSNKLHKLCDTIKL 365
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
++ +G +G V + A ++ T Y V++P GTS V+I
Sbjct: 366 DSKKKMIGWKGEV----FISMDAKVKGVMARTASYKPVVLPEGSVSPGTSCNVEIYDTTA 421
Query: 362 WSVFGEVI 369
G V+
Sbjct: 422 GYFLGRVL 429
>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 445
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 191/380 (50%), Gaps = 27/380 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 55
AK + + V GC Q S ++ +EGV +V G +VVE VE+ L
Sbjct: 64 AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123
Query: 56 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
++ ++LP LD R L I GC CTYC +ARG + S ++++
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 174
++ +G +E+ L+ GAYGRD L A+VA+L G LR+G P
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ HL IA + + + LH+P+QSG DAVL MNR+Y +F +V+++ +V +
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAMVDDIA 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TDII GFPGETDE F+ T N +K F ++H+ ++ PR GTPAA +VP+ ++R
Sbjct: 296 ITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAETKEER 355
Query: 294 SRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S L + E +LG E +E + + AD ++ G T Y+ V P +
Sbjct: 356 SSRLIELGKEMGREFARRFLGRE--MEVLVEQRLEADLHYMEGLTDNYLAVAFPGGNELK 413
Query: 349 GTSALVKITSVGRWSVFGEV 368
G VK+TSV VFGEV
Sbjct: 414 GEFVTVKLTSVKEEHVFGEV 433
>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
Length = 437
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 191/367 (52%), Gaps = 19/367 (5%)
Query: 13 KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K LVV+GC+ + S L+ S+V Q + R+++ V TL L + + L
Sbjct: 79 KKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYMLDGERDVNFLP 136
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
P R + V + I+ GCL C++C+TK AR +L SY ++V VR ++ G +E+ L
Sbjct: 137 KPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRDLVQGGAREIRL 194
Query: 131 SSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
+ +D AYG D+ LP L+ I+ ++P G LRIGM P +E + ++ +V R
Sbjct: 195 TGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAMEIIDDLLDVYRD 252
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
V+ F H+PVQSG D VL MNR YT+++F+ + + P ATDII G PGE +
Sbjct: 253 GRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKVKAKYPSSLFATDIIVGHPGEDE 312
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF-----EA 303
F +V L++E KF +V+++Q+ RP T +A M +VP V K+RS + V E
Sbjct: 313 GAFMNSVRLVEELKFERVYLAQYSIRPRTASASMPQVPEPVKKERSLRIQEVIKKIGVEI 372
Query: 304 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRW 362
+ Y+G GR + + +G V Y V VP ST G VKIT +
Sbjct: 373 YGSYVG--GRFRGLLASRGFREGFSTV-RLDNYFPVAVPASTLRSYGEFVDVKITGATYF 429
Query: 363 SVFGEVI 369
+ G ++
Sbjct: 430 DLRGVIV 436
>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
Length = 417
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 162/298 (54%), Gaps = 16/298 (5%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+ ++ +DTG YG D
Sbjct: 126 ILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEIRITGQDTGVYGWD 185
Query: 142 IG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPV 199
G LP LL+ I E+ DG +R+GM NP + +E+AEV H +Y+FLH PV
Sbjct: 186 NGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREELAEVFAEHDEIYNFLHAPV 243
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL M R++ + + +V+T + + ++TD I GFP ETD D Q++ L++
Sbjct: 244 QSGSDDVLEDMRRQHEVEQYVDIVETFDDYLEEWTLSTDFIVGFPTETDHDHEQSMALLR 303
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGRV 314
E + ++++++F RPGT AA MK + K RS+ ++ V EA +G E
Sbjct: 304 ETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKAMSDLKMDVVAEAHEEMVGTE--- 360
Query: 315 ERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRWSVFGEVI 369
R+ +TE G + + Y QV+V P G G A V+I FGE I
Sbjct: 361 RRVLVTEQGT-GDSVKCYDDSYRQVIVQNAPEYGLEPGDFATVEIVGHQTVYAFGEPI 417
>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
Length = 442
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 191/369 (51%), Gaps = 22/369 (5%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG----HEVRLLHRK 64
++V+GC+P+ + L I+GV I R+ E++ + +KG + +
Sbjct: 72 VIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGGEHLEFRASE 131
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ L++P+ R N + I I+ GC AC+YC K+ARG L S+ +V +R +A G
Sbjct: 132 PVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVEDIRAAVAGG 191
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +L L ++ +
Sbjct: 192 CREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSVLPILDDLVD 248
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V+ LH+P+QS S +VL MNR + + ++ + + TDII GF
Sbjct: 249 AFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMIITKFRARFEDLSLFTDIIVGFC 308
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ETD++F +TV +++Y+ +V+IS++ PRP T A + + S ++ +RS EL V E
Sbjct: 309 DETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFRNLDSRILVQRSHELHKVCEQI 368
Query: 305 -----TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+G +GRV TEI ++ T Y V++ + G A ++I +
Sbjct: 369 KLGSKQAMIGWKGRVFVSKYTEIG----DVLTRTDAYRPVVISGSNLKPGQHANIEIVAA 424
Query: 360 GRWSVFGEV 368
G++
Sbjct: 425 KPGYFLGKL 433
>gi|344210946|ref|YP_004795266.1| MiaB-like tRNA modifying enzyme [Haloarcula hispanica ATCC 33960]
gi|343782301|gb|AEM56278.1| MiaB-like tRNA modifying enzyme [Haloarcula hispanica ATCC 33960]
Length = 427
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNKGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
+++ L++E + ++++++F RPGT AA MK + K RS+E++ Y M
Sbjct: 300 ESMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
I+
Sbjct: 419 PIE 421
>gi|448654485|ref|ZP_21681411.1| hypothetical protein C435_09909 [Haloarcula californiae ATCC 33799]
gi|445766333|gb|EMA17460.1| hypothetical protein C435_09909 [Haloarcula californiae ATCC 33799]
Length = 427
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I +++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ VV+TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLDYWTLSTDFIVGFPTEEPADHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
Q++ L++E + ++++++F RPGT A MK + + K RS+E++ Y M
Sbjct: 300 QSMALLRETRPEKINVTRFSKRPGTDADDMKGLGGQIKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
++
Sbjct: 419 PVE 421
>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
2661]
gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 427
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 195/372 (52%), Gaps = 23/372 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 71 INELKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRM 123
Query: 65 KLPALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
D+ K K + LPI GC+G C+YC K ARG L SY E +V +
Sbjct: 124 PYIEEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKA 183
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +I G K + ++++DT YG DIG NL LLN + G ++R+GM +
Sbjct: 184 KELINKGAKCLLITAQDTACYGFDIGDNLANLLNELTQ---IKGEFIMRVGMMHAKNAEL 240
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ EV ++ V FLH+P+QSG D +L M R YT+ +F+ +V+ + + T
Sbjct: 241 ILDELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTT 300
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGET+E F T+ +++E K +H +++ R GT AA+MK++ + + K+RS L
Sbjct: 301 DIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEIL 360
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ + YL + + + + +G G+T + +V G +G VKIT
Sbjct: 361 DKLRRELS-YLNNKKYIGKAMKVLVLDEG---KGYTDNF--KVVKFEGGEVGEFRKVKIT 414
Query: 358 SVGRWSVFGEVI 369
+ + GE+I
Sbjct: 415 DAKTFGLKGELI 426
>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
Length = 406
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 186/357 (52%), Gaps = 19/357 (5%)
Query: 13 KPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDR---VVEVVEETLKGHEVR---LLHRK 64
+ ++V GC+PQ D L+ V ++G+ + + ++ V E L+G+ +R +
Sbjct: 43 REVIVTGCMPQVQLDEILENNPEVHVLGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDS 102
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L++P+ R + + I I+ GC C+YC ARG L S+ +S+V + + +G
Sbjct: 103 PEGLLNVPRKRFSPNIHICQISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEG 162
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EVWL+S+D YG D ++LP LL I A +P G +R+GM NP L L E+
Sbjct: 163 CSEVWLTSQDNAQYGMDKEIHLPALLERITA-IP--GDFRVRVGMMNPASTLGILDELLR 219
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VY LH+P+QS SD +L M R++T+ +V+ P + TDII GFP
Sbjct: 220 AYSSEKVYKVLHLPIQSASDKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFP 279
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
GE +EDF T++ I+ Y +V+IS++ PRP T A + + + + +V +RS +L +
Sbjct: 280 GEDEEDFELTLDWIRTYHPDKVNISRYTPRPHTEALQFRNIDTRIVVERSGKLHRLCNQI 339
Query: 305 TPYLG----MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALVKI 356
LG M GR ++I++ A L+ T Y V++P G + G VKI
Sbjct: 340 K--LGKKEDMVGREVEVFISQ-KAKVKGLMSRTDSYKPVVIPKAGELCPGQRCRVKI 393
>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
Length = 430
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 173/301 (57%), Gaps = 16/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I +E+ +G +R+GM NP + +E+A+V H +Y+F+H
Sbjct: 184 WDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADVFAEHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P ETDED ++++L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYPTETDEDHAKSMDL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E ++++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREVHPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSETKMDIVAAAYEDMVGTEH 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
V + + E D + + Y Q++V + G G A VK+T+ FGE++
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNASEHGLEPGDFARVKVTAHQTVYAFGELV 417
Query: 370 K 370
+
Sbjct: 418 E 418
>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
Length = 426
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 173/304 (56%), Gaps = 16/304 (5%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
+ V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG
Sbjct: 121 DGIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAKELRITGQDTG 180
Query: 137 AYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSF 194
YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V +H +Y+F
Sbjct: 181 VYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADVFAKHDKLYNF 238
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P ETDED ++
Sbjct: 239 IHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYPTETDEDHERS 298
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLG 309
+ L++E + +V++++F RPGT AA +K + + K+RS+E++ V EA+ +G
Sbjct: 299 MALLREIRPEKVNVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDIVAEAYEEMVG 358
Query: 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFG 366
E V + + E D + Y Q++V + G G V++T+ FG
Sbjct: 359 TEQEV--LVVQEGTGDSVKC--RDAAYRQIIVQNASEHGLEPGDFTRVEVTAHQTVYAFG 414
Query: 367 EVIK 370
E ++
Sbjct: 415 EPVE 418
>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
Length = 425
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 188/372 (50%), Gaps = 19/372 (5%)
Query: 5 IAKCKSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
I K K K +VVAGC+P L ++ + +R+V+ + +E
Sbjct: 60 IEKVKQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDF 114
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L ++ ++P V+ + I+P+N GCL C +C TK AR L S + ++ ++ +
Sbjct: 115 LGYEEFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDL 173
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ +GV E+ LSS+D YG D LP L+ I E+ G MLRI M NP + +
Sbjct: 174 VENGVYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKD 231
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L+ ++ + V+ FLH+P+QSG D VL M R+Y++ D VV+ + ++IATD
Sbjct: 232 LENFVKIFEYEHVFKFLHLPIQSGDDEVLKIMGRDYSIEDALYVVNEFRSRIKDLRIATD 291
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II G PGE++E F T+ ++ F +VHI+Q+ PRP T +ARM ++ +V KKRS L
Sbjct: 292 IIVGHPGESEEAFENTLKVVVSGLFDRVHIAQYTPRPFTLSARMPQISDSVKKKRSSLLK 351
Query: 299 SVFEAFTPYLGMEGRVERIW---ITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALV 354
E ME V +I + E + TK Y+ +++ + LG +
Sbjct: 352 EELEKVLNK-KMEKYVGKIIEGVVVEKDEKRESYIARTKNYISIVLKGGKKVSLGMKVNI 410
Query: 355 KITSVGRWSVFG 366
+IT + + G
Sbjct: 411 EITDYTPYDLRG 422
>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
Length = 423
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 170/301 (56%), Gaps = 16/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL I +E+ DG +R+GM NP I +E+A+V RH +Y+F+H+
Sbjct: 184 WDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADVFDRHEKLYNFIHL 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSDAVL M R++ ++ F VV+T + ++TD I GFP ET+ D Q++ L
Sbjct: 242 PVQSGSDAVLEEMRRQHRVAKFLEVVETFDRELDYWTLSTDFIVGFPSETEADHEQSMAL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+E + +V++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 302 FREVRPEKVNVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMDVVAEAYEAMVGETH 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
RV + + E D + + Y Q++V + G G V++TS FG+ +
Sbjct: 362 RV--MAVEEGTGDSVKC--RDEAYRQIIVRNASERGVEPGDFLDVEVTSHQTVYAFGDPV 417
Query: 370 K 370
+
Sbjct: 418 R 418
>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
Length = 430
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 165/294 (56%), Gaps = 11/294 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V I+ I GCLG CTYC T+ ARG L S+ V+ + ++ + G E+ L+++DT A+G
Sbjct: 133 VGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYEIQLTAQDTSAWG 192
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 199
RD G LP LL A+ + +P G+ LR+GM NP L L ++ + ++ F+H+PV
Sbjct: 193 RDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFASDRLFRFVHLPV 249
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD +L M R YT+ +F +V P + IATD I GFPGET+EDF++++ LI
Sbjct: 250 QSGSDRILEQMGRGYTVREFEEIVSAFRGRYPDISIATDFIVGFPGETEEDFSRSLELIG 309
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME----GRVE 315
+ +V+++++ PRP T K P AV K RSR L + E Y+ + G +
Sbjct: 310 RIRPAKVNVTRYSPRPFTGPFEEKDFPDAVKKDRSRILNAYAEE--QYVALNRPLLGTMV 367
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+TE G ++ T Y Q LV +GT+A+V++ ++ G+++
Sbjct: 368 FCVVTEKIRPG-SVMARTASY-QGLVIGEELSVGTAAVVRLKKDRKYFFMGDLL 419
>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
Length = 430
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 166/321 (51%), Gaps = 27/321 (8%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
K K +VVAGC+ +L + SI+G D V V ++ E +
Sbjct: 73 KERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ--------R 116
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
LD V + ++ I GC+G CTYC K ARG L SY E + V++ + G E+
Sbjct: 117 LDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVESGANEI 171
Query: 129 WLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+ E
Sbjct: 172 RITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDELLEAFN 228
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I GFP ET
Sbjct: 229 TEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNIRARFRQSTISTDFIIGFPTET 288
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFT 305
+EDF ++NL++E K +V+I++F PRPGT A+++ + K+RSR ++V+ F
Sbjct: 289 EEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLLEREKKRRSRIFSTVYHNIVFA 348
Query: 306 PYLGMEGRVERIWITEIAADG 326
+EG + +TE G
Sbjct: 349 KNKELEGAELPVLVTETGKKG 369
>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
Length = 428
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 191/360 (53%), Gaps = 18/360 (5%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV----RLL 61
K+ + + VAGC Q +++++EGV +V G Q +V+ V+E LK G V ++
Sbjct: 67 KNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIKVDNVM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ KK L++ + + + L I GC CTYC +ARG + S +S++ + +T++
Sbjct: 127 NLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQAKTLV 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+G E+ L+ T YG D+ N + +V + DG LRI I + +
Sbjct: 185 ANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQISDEI-- 240
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
I + + + LH+P+QSG DA L MNR+YT S + ++ + +P + TD+I
Sbjct: 241 INLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPNIAFTTDVIV 300
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGE+DE+F +T N IKE + ++H+ + R TPAA+MK +V + +R L +
Sbjct: 301 GFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKHERVNRLLEL 360
Query: 301 FEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+ ++ G++ ++ + DG +LVGH Y++V V +T N++G VKI +
Sbjct: 361 SKKLNRDFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKTTDNLIGEIVEVKINN 418
>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 467
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 28/335 (8%)
Query: 14 PLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
P+ + GC P+ R+ L+ + V ++++D + ++ + ++ R D
Sbjct: 104 PIYITGCAPKDFREEALRTVPHVQFTSLKELDASAILPTQSAQSPSSQINARTP----DS 159
Query: 72 PKVRRN-----KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
K RN FV I+ I GCL AC +C T +G L S+ +++V +V+ ++ DG
Sbjct: 160 NKASRNVLRESPFVGIVNIEEGCLDACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCL 219
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+ L+ +D YG DIG NL L I+ + +G+ +R+GM NP +L + + +
Sbjct: 220 EIQLTGQDCACYGFDIGTNLAELTQRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCF 277
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+Y F+H+PVQSGS+ VL AMNR +T D+ T+ E ++TD+I G+PGE
Sbjct: 278 TDDRIYKFIHIPVQSGSENVLKAMNRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGE 337
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-----KRSRELTSVF 301
T DFN T+ L+KE + +I++F RPGT AAR++ + V +RS L F
Sbjct: 338 TAADFNDTLTLLKETRPTVCNITRFVTRPGTVAARLETASNQAVSDDIKHERSAILAEAF 397
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGY 336
+ + +E R WI D +V GY
Sbjct: 398 Q----QIALEN--NREWI----GDECTVVTEKPGY 422
>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
1633]
gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
1633]
Length = 425
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 12/299 (4%)
Query: 8 CKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 65
K + K LVVAGC+ Q + K SIV Q D++ VE R++
Sbjct: 67 AKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVVLLTG 121
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L + V + +P GCLG CT+C KHAR L S+ +E + V + G
Sbjct: 122 LRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAVRLGA 181
Query: 126 KEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
E+ L+ D G YG D+ LP L+ + VAE+ +G M+R+GM NP + L ++
Sbjct: 182 VEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYILDDLV 238
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
E L+H VY FLH+P+QSGS+ +L M R+YT+ ++ V+ L +PG+ IATDI+ GF
Sbjct: 239 EALQHRKVYKFLHIPLQSGSNRILKLMGRKYTVEEYIDYVEELKSKIPGISIATDILVGF 298
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
P ETDEDF TV +IK+ +F +VH++ + RP T A + ++P+ K R + V E
Sbjct: 299 PHETDEDFQDTVEVIKKLRFERVHLAAYSIRPRTLATSLPQIPTQTKKSRVLQALRVIE 357
>gi|395645589|ref|ZP_10433449.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
gi|395442329|gb|EJG07086.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
Length = 413
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 159/279 (56%), Gaps = 9/279 (3%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
I+ + GC G C YC T+ ARG L S E++ V ++ G EV ++ +D A+G D
Sbjct: 120 IVQVAAGCAGRCAYCITRAARGPLRSRPKEAICREVEALVGRGAYEVQVTGQDVSAWGMD 179
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 201
+G LP L++A V+ LP G +LR+GM NP +A +L V+SF+H+PVQS
Sbjct: 180 LGERLPALIDA-VSVLP--GDFLLRLGMMNPATAQGIAVPLARLLGEAKVFSFVHLPVQS 236
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GSDAVL+AM R YT +F +V + P ++I TD I G+P ET+EDF +++ L++
Sbjct: 237 GSDAVLAAMRRGYTAGEFEAMVAAFRKACPEVRICTDFIVGYPTETEEDFAESMALLRAI 296
Query: 262 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERIWI 319
+ +V+++++ PRPGTPAA +K +P + K RSR L + + + G +
Sbjct: 297 RPEKVNVTRYSPRPGTPAAALKTMPERIAKDRSRILDAAAKEIYREQNAALVGETVEAVV 356
Query: 320 TEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALVKIT 357
T +G +V + Y +++VP GN L G V+IT
Sbjct: 357 TCRKKEG-SVVARDRAYREIVVP--GNFLPGERLNVRIT 392
>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
Length = 438
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 26/369 (7%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
+VV GC Q +L+++ GV+ I+G + + E++++ G R+L L+
Sbjct: 78 IVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRVLVSDISRELNER 135
Query: 73 KVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
R F E L + GC C+YC +ARG S ++E + +RT G KEV
Sbjct: 136 GTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAGIRTFAERGFKEV 195
Query: 129 WLSSEDTGAYGRDIGVNLPIL--LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ GAYG D+ L +L LNA E + +RIG P + + L I+ +
Sbjct: 196 VLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTEVSDAL--ISFLA 250
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ V LH+P+QSG D VL AMNR Y+ +DFR+V++ L +P + I TDII GFPGE
Sbjct: 251 KSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLDTDLPSICIGTDIITGFPGE 310
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA-- 303
TD++F ++ H+ F PR GTPAA M+ V S+V+K+R++ L + E
Sbjct: 311 TDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVHSSVIKERAKALRKLSEEKK 370
Query: 304 ---FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ ++G E++ + +G L G ++ Y+ V + ++L T LV+IT V
Sbjct: 371 KSFYRSFIG-----EKLQVLVQTREGDLLKGLSRNYIPVFMEGDDDLLKTEQLVRITGVE 425
Query: 361 RWSVFGEVI 369
R V GEVI
Sbjct: 426 REKVTGEVI 434
>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
Length = 417
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGAKEIRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I +E+ +G +R+GM NP I +E+ EV RH +Y+F+H+
Sbjct: 184 WDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVEVFDRHDKLYNFIHL 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL AM R++ + F +V+T E + ++TD I GFP ET+ D Q++ L
Sbjct: 242 PVQSGSDTVLEAMRRQHRVDKFVEIVETFDETLDYWTLSTDFIVGFPTETEADHEQSMAL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+E + +V++++F RPGT AA MK + V K+RS+E++ V EA+ +G
Sbjct: 302 FREVRPEKVNVTRFSKRPGTDAADMKGLGGTVKKERSKEMSELKMDIVAEAYESMIGETH 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
RV + + E D + + Y Q++V + G G V++TS FG+ +
Sbjct: 362 RV--MVVREGTGDSVKC--RDEAYRQIIVQNASEHGIEPGDFLDVEVTSHQTVYAFGKPV 417
>gi|374637033|ref|ZP_09708554.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373557163|gb|EHP83636.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 288
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 15/289 (5%)
Query: 84 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 143
PI+ GCLG C+YC K ARG L SY E +V + + +I G K ++++++DT YG DIG
Sbjct: 10 PISEGCLGDCSYCIVKIARGKLISYPREKIVNKAKDLIDKGAKCLFITAQDTACYGFDIG 69
Query: 144 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 203
NL LLN + +G ++R+GM + L E+ EV ++ V FLH+P+QSG
Sbjct: 70 DNLANLLNDLSQ---IEGEFIMRVGMMHAKNAQLILDELIEVYKNEKVGKFLHLPLQSGD 126
Query: 204 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 263
D +L M R YT+ +F+ +V+ V + TDII GFPGET+E F T+ ++KE K
Sbjct: 127 DEILKKMKRGYTVDEFKDIVNEFRRKVKNLCFTTDIIVGFPGETEEQFQNTLEVLKELKP 186
Query: 264 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME---GRVERIWIT 320
+H +++ R GT AA+MK+V + + K+RS L + + YL + G+ R+ +
Sbjct: 187 DYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEILDKLRRELS-YLNNKKYIGKTMRVLVL 245
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ G+T + +V G +G +KIT + + G++I
Sbjct: 246 DKGK------GYTDNF--KVVKFEGGEVGEFRKIKITDAKTFGLRGKLI 286
>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
Length = 411
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 167/296 (56%), Gaps = 19/296 (6%)
Query: 83 LPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+P+ VGCLG CT+C TK+ RG G S + +V V+ +A G +E++L+ +D YG
Sbjct: 116 VPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVAKGAREIYLTGQDVITYG 175
Query: 140 RDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSF 194
D G NLP LL I+ E+ DG +RIGM+ P + + +I ++++ VY F
Sbjct: 176 FDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKFVDQILDIVKSDERVYRF 233
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATDIICGFPGETDEDFNQ 253
H+PVQSGSD VL M R YT ++R +V + EL + IATDII GFPGET+EDF +
Sbjct: 234 FHLPVQSGSDRVLRRMGRRYTAQEYRELVLKIKRELNDDVFIATDIIVGFPGETEEDFQE 293
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF--EAFTPYLGM 310
T+ L++E F +VH++++ RP T A+ M +VP AV K+RS+ +S+ A
Sbjct: 294 TLKLMEELVFDKVHVARYSRRPFTEASVMPDQVPDAVKKERSKRASSLALELALRRNQRF 353
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA---LVKITSVGRWS 363
GR R+ + EI D LVG Y QV+V LG +VK V W+
Sbjct: 354 VGRRIRVLVDEI--DHGLLVGRAHDYRQVVVGRGEGPLGVFEDVMVVKAEPVYLWA 407
>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
Length = 414
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 162/295 (54%), Gaps = 11/295 (3%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GC+ C+YC TKHA G + S VE V + R ++ G KE+ ++ +DTG YG D
Sbjct: 124 ILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAGAKEIRITGQDTGVYGWD 183
Query: 142 IGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPV 199
G L LLN I A DG +R+GM NP + +E+AEV + +Y+FLH PV
Sbjct: 184 DGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELAEVFAENEKLYNFLHAPV 240
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL M R++ + +FR VV T + + +ATD I GFP E+D D +++ L++
Sbjct: 241 QSGSDDVLGEMRRQHQVREFREVVKTFDDHLDHWTLATDFITGFPTESDADHEESMELLR 300
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERI 317
E + ++++++F RPGT AA MK + + K+RS+ ++ + Y M G +
Sbjct: 301 ETQPERINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSDLKMDVVGAAYESMVGERHEV 360
Query: 318 WITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ E G + + + Y Q+++ P G G V+ITS FGE +
Sbjct: 361 LVVEPGT-GESVKCYDEAYRQIIIQDAPEHGVAPGDFVEVEITSQNTVYAFGEPV 414
>gi|448689439|ref|ZP_21695023.1| MiaB-like tRNA modifying enzyme [Haloarcula japonica DSM 6131]
gi|445777710|gb|EMA28670.1| MiaB-like tRNA modifying enzyme [Haloarcula japonica DSM 6131]
Length = 427
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 167/303 (55%), Gaps = 12/303 (3%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
N V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG
Sbjct: 122 NGVVGILPIARGCMSDCSYCITKQATGKIESPSVDENVEKARALVHAGAKEIRITGQDTG 181
Query: 137 AYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
YG D LP LL+ I ++ DG +R+GM NP + +E+A V H +Y
Sbjct: 182 VYGWDTNQGTSLLPELLDRICTDI--DGDFRVRVGMANPKGLHGVREELAAVFAEHDELY 239
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
+F+H PVQSGSD VL+ M R++ +S++ V++TL + + ++TD I GFP E D
Sbjct: 240 NFIHAPVQSGSDDVLADMRRQHAVSEYLEVIETLDDHLDYWTLSTDFIVGFPTEEPTDHE 299
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGM 310
+++ L++E + ++++++F RPGT A MK + + K RS+E++ Y M
Sbjct: 300 ESMALLRETRPEKINVTRFSKRPGTDADDMKGLGGQIKKDRSKEMSEAKMELMAEAYEEM 359
Query: 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGE 367
G + + E D LVG+ + Y QV++ G +G + V+ITS FGE
Sbjct: 360 VGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEIGDTVDVEITSHNTVYAFGE 418
Query: 368 VIK 370
++
Sbjct: 419 PVE 421
>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
Length = 420
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 134/216 (62%), Gaps = 3/216 (1%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+ ++ + GC G C+YC T++ARG L S+ + RV+ + +G EV L+ +D ++G
Sbjct: 134 IGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAVEVQLTGQDLSSWG 193
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 199
D+G +LP LL I A P G LR+GM NP +L L ++ + ++ FLH+P+
Sbjct: 194 LDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAYQSDRIFQFLHLPI 250
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL+AMNR YT SD + ++ E+ P + + TD+I GFPGETD+DF +T+ +I
Sbjct: 251 QSGSDRVLAAMNRSYTASDVQQILRAFREVHPDLTLMTDLIVGFPGETDQDFEETLQMIT 310
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 295
+V+++++ RPGTPAA + + +V K RSR
Sbjct: 311 ALSPNKVNMTRYSGRPGTPAADLPDLQDSVKKDRSR 346
>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
Length = 437
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
+VV GC PQ + +++ +EGV I+G Q+ R+VE+VEE L+ +L + +D
Sbjct: 73 VVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILDNVQQMTVDTK 132
Query: 73 ------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+K L I GC CTYC ARG L S +++S+ V ++A G K
Sbjct: 133 FEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREEVGKLVAAGYK 192
Query: 127 EVWLSSEDTGAYGRDIGVNLP--ILLNAIVAELPPDGSTMLRIGMTNP----PFILEHLK 180
EV L G YG+++ L +A+ A L +G +R+G P +L+ +
Sbjct: 193 EVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVEVEPRLLQLMA 252
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E + RH LH+P+QSG D +L AM+R Y F +V+ + VP + I TD+I
Sbjct: 253 EEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRAQVPDVAITTDVI 306
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGE +EDF T+ K+ F ++HI + R GTPAA MK +V AV +R+ L
Sbjct: 307 VGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDEAVKSERAARLAK 366
Query: 300 VFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
V E + G+VE + E D H+ G Y++V+VP T + T VKIT
Sbjct: 367 VDEELHQQMLQSTVGKVEEVLF-EQPVDDEHMEGLCGPYLRVVVPGTAELANTIVKVKIT 425
Query: 358 SVGRWSVFGEV 368
+ + GE+
Sbjct: 426 GIKEDFLLGEL 436
>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
Length = 430
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 176/310 (56%), Gaps = 16/310 (5%)
Query: 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 136
+ V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG
Sbjct: 121 DGIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAKELRITGQDTG 180
Query: 137 AYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSF 194
YG D G LP LL+ I +E+ +G +R+GM NP + +++A+V +H +Y+F
Sbjct: 181 VYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADVFAKHDTLYNF 238
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P ETDED ++
Sbjct: 239 IHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYPTETDEDHERS 298
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLG 309
+ L++E + ++++++F RPGT AA +K + + K+RS+E++ V A+ +G
Sbjct: 299 MALLREIRPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDIVAAAYEDMVG 358
Query: 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFG 366
E V + + + D + + Y Q++V + G G A V++T+ FG
Sbjct: 359 TEHDV--LVVQDGTGDSVKC--RDEAYRQIIVQNASEHGLEPGNFARVRVTAHQTVYAFG 414
Query: 367 EVIKILNQVD 376
E ++ + D
Sbjct: 415 EPVETRPEPD 424
>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
Length = 429
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 167/295 (56%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A+V RH +Y+F+H
Sbjct: 184 WDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELADVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETDED +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFRDIVETFDRELDYWTLSTDFIVGYPTETDEDHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
Length = 413
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 197/372 (52%), Gaps = 35/372 (9%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV-------EVVEETLKGHEVRLL 61
KS K +VVAGC+ + + K++E ++ + + + + +E++ ++ L
Sbjct: 64 KSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINLE 121
Query: 62 HRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ K P+L P LPI+ GC+G C+YC K ARG L SY+ E LV + +
Sbjct: 122 EKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAKE 171
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+I G K + ++++DT YG D NLP L+N + + +G ++RIGM + + L
Sbjct: 172 LINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENIL 228
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
++ E + V LH+P+QSG D VL AM REYT+ +F ++V+ + + + TDI
Sbjct: 229 DDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKREYTVDEFISIVNEFRKKIKDLTFVTDI 288
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
I GFP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L
Sbjct: 289 IVGFPTETEEAFENTLEVLRKLKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILDK 348
Query: 300 VFEAFTPYLGME---GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ + Y+ + G+ R+ +TE G T + +V+ + +GT +KI
Sbjct: 349 LRRELS-YMNNKKYIGKKMRVLVTEEGK------GITHNF-KVVRFNKNAEIGTFKEIKI 400
Query: 357 TSVGRWSVFGEV 368
T + +FGE+
Sbjct: 401 TDAKTFGLFGEL 412
>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
Length = 440
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 184/357 (51%), Gaps = 25/357 (7%)
Query: 4 LIAKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
+I + + K ++V GC+P+ + +++ I+GV + RV E+++ K +
Sbjct: 58 IIREAADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAK 117
Query: 62 HRKKL------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
R ++ +P++R N + I ++ GC +C+YC ARG L S+ E ++
Sbjct: 118 GRMQIFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIA 177
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMT 170
+R +++G +E+WL+S+D G YG D + LP LL I +P G +R+GM
Sbjct: 178 DIRRAVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMM 234
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
NP +L L ++ + + VY LH+P+QS SD VL MNR +++ + V+
Sbjct: 235 NPFSVLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVLRNMNRYHSIQEANHVIRQFRNKF 294
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
+ + TDII GFPGET+EDF ++V ++E++ +V+IS++ PRP T A S ++
Sbjct: 295 DDLTLFTDIIVGFPGETEEDFKKSVKWVEEFRPDKVNISRYTPRPRTKAWDFHNSDSRIL 354
Query: 291 KKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
+RS EL + F +G EG V E G + T Y+ V++P
Sbjct: 355 TRRSNELHRICRSTKFATKNKLIGWEGNV--FLSKEAKKQGT--MARTDSYLPVVIP 407
>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
Length = 428
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 186/367 (50%), Gaps = 26/367 (7%)
Query: 15 LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKKLPA 68
LVV+GC+ P+ D+ S+V I+++ EVVE K VR R LP
Sbjct: 75 LVVSGCLVNVRPKSILDVAP--SASLVEPDAIEKIPEVVESEDKLLIVRQYKASRNVLPD 132
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKE 127
V ++PI GCLG+C +C RG + SY ++ ++ VR ++ G +E
Sbjct: 133 YS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIENVRAAVSKGARE 186
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
++L+ +D AYG D+G NL L+ I+ E+ DG +R+GM P + LK + E+ R
Sbjct: 187 IFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLGRFLKNLLELFR 244
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+Y + H+P QSG D VL M R+YT+ +++ +V+T+ I TDII GFPGE
Sbjct: 245 DERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNTIRGSGWKFSIVTDIIVGFPGEG 304
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-----ELTSVFE 302
+ +F T+ ++E F +VH++++ RP T M VP V K+RSR L +E
Sbjct: 305 EAEFQNTLKFLREVMFDKVHVARYTFRPFTEGYVMSGVPEPVKKQRSRLASRVALEVAYE 364
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
Y+G E V T I D LVG T Y V++ +G VKI
Sbjct: 365 INRSYVGEEREVVVE-GTSIRGD---LVGRTIEYKPVVIKDQEARVGEIVRVKIVDATPV 420
Query: 363 SVFGEVI 369
S+ G+V+
Sbjct: 421 SLIGKVL 427
>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
Length = 429
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 166/295 (56%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A V RH +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELAAVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETDED +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDEDHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 EV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|126459773|ref|YP_001056051.1| RNA modification protein [Pyrobaculum calidifontis JCM 11548]
gi|126249494|gb|ABO08585.1| RNA modification enzyme, MiaB family [Pyrobaculum calidifontis JCM
11548]
Length = 440
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 22/307 (7%)
Query: 79 FVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDT 135
V ++P+ VGCLG CT+C TK+ RG G S + ++ V+ + G +E++L+ +D
Sbjct: 115 LVYVVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDEVIRHVKKAVEGGAREIYLTGQDV 174
Query: 136 GAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPC 190
YG D G LP LL ++ E+ DG +RIGM+ P +I +++ R
Sbjct: 175 ITYGFDARWRSGWTLPDLLERLLREV--DGEYRVRIGMSEPWVFERFADQILDIVKRDRR 232
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDE 249
VY + H+PVQSGSD VL AM R YT+ +++ ++ + ++ + IATDII GFPGE E
Sbjct: 233 VYRYFHLPVQSGSDRVLKAMGRRYTVDEYKELIRKIRRVLGEPVFIATDIIVGFPGEEWE 292
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYL 308
DF TV L++E +F +VH+++F PRP T AA M ++VP A K+RS+ L+ V +L
Sbjct: 293 DFLATVKLVEELQFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEV-ALRVAHL 351
Query: 309 GMEGRV---ERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRW 362
RV + + ITE+ D +VG Y QV+V P G +LG V + G
Sbjct: 352 RNGARVGSRDVVLITEV--DHGLVVGRAGDYRQVVVKRGPGDG-LLGQFVEVVVAGAGPV 408
Query: 363 SVFGEVI 369
++G+VI
Sbjct: 409 YLYGDVI 415
>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
2162]
gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
2162]
Length = 428
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 178/326 (54%), Gaps = 30/326 (9%)
Query: 11 AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 68
A K L+VAGC+ + + G S++ Q RVVEV+E R++ + A
Sbjct: 70 AGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVVMINGVRA 124
Query: 69 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
D V V +P+ GCL C++C ++HAR L S++++++V V + DG EV
Sbjct: 125 RDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAVRDGAVEV 184
Query: 129 WLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
L+ D G YG D+ LP L+ IV + G+ MLR+GM NP EHL+ I E
Sbjct: 185 QLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHLRHILEDL 238
Query: 185 ---VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
V VY FLH+P+QSGS+ VL M R YT+ ++ +VD + +P + IATDII
Sbjct: 239 VKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRVKSSIPEVSIATDIIV 298
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
G P E++EDF +T+ +I+E F +VH++ + RP T +A M+++P++V K+R + V
Sbjct: 299 GHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAMQQLPTSVRKERVLKALRVV 358
Query: 302 EAFTPYLGMEGRVE------RIWITE 321
E +GM R R +ITE
Sbjct: 359 EK----VGMRVRARYVGTSVRCFITE 380
>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
11486]
gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
11486]
Length = 427
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 188/345 (54%), Gaps = 28/345 (8%)
Query: 9 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
++ K L+VAGC+P Q + K S+V Q R+ VE G V L ++
Sbjct: 68 QARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLDGVRER 125
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+ L NK I PI GCL C++C TKHAR L S+TVE++V V T + G
Sbjct: 126 DRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAVRMGAV 182
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFILEHLKE 181
E+ L+ D G YG ++ LP L+ V+ LP G +RIGM NP P IL+ L E
Sbjct: 183 EIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPILDELLE 239
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ R +Y FLH+P+QSGSD VL AMNR+YT+ ++R ++ + + + + IATDII
Sbjct: 240 AVKSDRR--IYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEVKQKISDVSIATDIIV 297
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS-RELTSV 300
G P E +EDF +T+ +I+E +F +VH + + RP T +A M +P+ + K+R R L +V
Sbjct: 298 GHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSAGMPNIPTRIRKERMLRMLETV 357
Query: 301 ----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 341
F+ Y+G+ V +ITE + VG Y+ V++
Sbjct: 358 EEVGFKVREKYIGLTLPV---FITEYSNT---WVGRLDNYIPVIL 396
>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
Length = 451
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 193/378 (51%), Gaps = 26/378 (6%)
Query: 11 AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEETL--KGHEVRLLHR 63
+K+ + + GC+ G RD ++L + G Q I+ +V ++E + GH+V +L
Sbjct: 81 SKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEAAIIQGGHQVEVLDS 138
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+ +LP R + + LP+ VGC CTYC + RG S T+E +V R ++AD
Sbjct: 139 STSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRTLEDVVEEARGLVAD 198
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKE 181
GVKE+ L ++ +YGRD+ P + + VAE G LR ++P + + E
Sbjct: 199 GVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRFATSHPKDLTREVIE 254
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ L + + LH+PVQSGSDA+L AMNR YT + +++ + ++ P + +TDII
Sbjct: 255 LYGSLGN--LMPSLHLPVQSGSDAILKAMNRRYTAEHYLGLIEEVRKVNPDISFSTDIIV 312
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF T +L++ + QV + R GTPAA M+ P V+++R L +
Sbjct: 313 GFPGETEEDFQATYDLVERVGYSQVFTFIYSRREGTPAASMQDDTPHEVIQRRFDSLVDL 372
Query: 301 FE--AFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVP-----STGNMLGTSA 352
+ AF GR + + + D L GH+ + V P +++GT
Sbjct: 373 VQENAFAQNQRFVGRTVDVLVEGASKRDERVLAGHSPHNITVHAPLPEGVRIDDIVGTVV 432
Query: 353 LVKITSVGRWSVFGEVIK 370
V+I W + G +++
Sbjct: 433 PVRIDEAKAWYLSGAMLR 450
>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 401
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 156/289 (53%), Gaps = 7/289 (2%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+PIN GC G C +C + ARG L S E + G+++ ++ G+KE+ ++S DT AYG+DI
Sbjct: 117 IPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKEIKITSLDTAAYGKDI 176
Query: 143 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 202
G+ LP L+ I E+ D LR+GM P LE + ++ R V+ FLH+PVQSG
Sbjct: 177 GLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYRSEKVFKFLHLPVQSG 233
Query: 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262
D VL MNREYT+SDF + E P ++TD+I G+ E D+ F +TV LI++ +
Sbjct: 234 DDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAENDDSFEKTVQLIEKIR 293
Query: 263 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERIWIT 320
+++++F PR T + P+ ++K++ R + + + + + G+ E + IT
Sbjct: 294 PEIINVTKFSPRELTADFEKRPKPTNILKEQDRMIADMHKEILQEKFSNLIGKTEFVLIT 353
Query: 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
E G ++G Y +++ V+IT S+ G +I
Sbjct: 354 E-NGKGRSMIGRDHAYRPIVIMDKTRKFEFHQ-VEITGFENTSLIGRII 400
>gi|397906230|ref|ZP_10507046.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
gi|397160689|emb|CCJ34381.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
Length = 433
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 193/366 (52%), Gaps = 27/366 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKG-----HEV 58
AK K+ +V GC Q +++++E V I VG + ++VE V+E LK H
Sbjct: 64 AKKKNNDAVVVAVGCYVQVAPEEVEKIEDVDIIVGTKDKGKIVEFVDEYLKNRKRIKHVE 123
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
++ + L++ + + +K L I GC C+YC +ARG + S E+++ V
Sbjct: 124 NVMSIRHFEELEIDEYQ-DKTRAFLKIQDGCDRFCSYCLIPYARGPVRSRKPENILMEVE 182
Query: 119 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF--- 174
+ +G KEV LS +YG+D+ VNL ++ I +G +RIG +P F
Sbjct: 183 KLSRNGYKEVILSGIHVASYGKDLKDVNLIDVIEMIS---KVEGIERIRIGSVDPTFFNE 239
Query: 175 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
I+E LK I + H H+ +QSG D L MNR YT S+++ +VD L E+ +
Sbjct: 240 EIIEKLKYIDKFCHH------FHLSLQSGCDETLRRMNRHYTTSEYKKIVDNLREVFEDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
I TD+I GFPGETDE+F +T +KE K ++HI ++ PR GT AA K +VP ++ ++
Sbjct: 294 SITTDVIVGFPGETDEEFERTFEFLKEIKLSKMHIFKYSPRKGTKAAEYKNQVPESIKEE 353
Query: 293 RSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
RS++L + + EG+V + E +G + G+TK Y++V V S ++ G
Sbjct: 354 RSKKLIELDKILEHEFIKKHEGKVMDVLFEE-YKEGYNW-GYTKNYIRVGVESQRDLSGE 411
Query: 351 SALVKI 356
VKI
Sbjct: 412 IINVKI 417
>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
Length = 414
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 162/297 (54%), Gaps = 11/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAGAKEIRVTGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L LL+ I A DG +R+GM NP + +E+A+V + +Y+FLH
Sbjct: 182 WDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELADVFAANEKLYNFLHA 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + +FR VV+T + + +ATD I GFP ETD D ++++L
Sbjct: 239 PVQSGSDDVLGEMRRQHQVREFREVVETFDDRLDHWTLATDFITGFPTETDADHEESMDL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVE 315
++E + ++++++F RPGT AA MK + K+RS +T + Y M G
Sbjct: 299 LRETQPERINVTRFSKRPGTDAAEMKGLGGTKKKERSSAMTDLKMDVVGAAYESMVGERH 358
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ + E G + + + Y QV++ P G G V+IT FGE +
Sbjct: 359 EVLVVEPGT-GESVKCYDEAYRQVIIQNAPEHGVAPGDLLTVEITGQNTVYAFGEPV 414
>gi|257054056|ref|YP_003131889.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
gi|256692819|gb|ACV13156.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
Length = 424
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 163/298 (54%), Gaps = 15/298 (5%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GCL C+YC TK A G + S VE V + R ++ G +E+ ++ +DTG YG +
Sbjct: 127 ILPIARGCLSDCSYCITKQATGTIDSPPVEENVQKARELLDAGARELRITGQDTGVYGLE 186
Query: 142 IGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPV 199
G LP LL I ELP G +R+GM NP + +E+A+V H +Y+FLH PV
Sbjct: 187 NGERKLPELLTRIC-ELP--GEFRVRVGMANPKGVYGMHEELADVFAEHDELYNFLHAPV 243
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL M R + +F+ +V E + +ATD I GFP ETD DF Q+++L++
Sbjct: 244 QSGSDDVLVDMRRRHRTPEFKEIVAAFDERLEYWTLATDFIVGFPTETDADFQQSLDLLR 303
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERI 317
+ + +V++++F RPGT AA + + + K+RS +T + + M G +
Sbjct: 304 DVEPEKVNVTRFSKRPGTDAAELDGLGGTIKKERSSAMTDLKMDVVGAAHDAMVGEEHTV 363
Query: 318 WITEIAADGIH--LVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVIK 370
+T+ DG LVG+ + + QV +P +M LG V+IT GE I+
Sbjct: 364 LLTQ---DGTEDSLVGYDEAHRQVAIPEAESMGLELGDFVDVEITGHNTVYALGEPIR 418
>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
Length = 429
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 168/301 (55%), Gaps = 16/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A V H +Y+F+H
Sbjct: 184 WDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELAGVFAEHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETDED +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELAYWTLSTDFIVGYPTETDEDHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
V + + E D + + Y Q++V + G G A VK+T+ F E +
Sbjct: 362 EV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVKVTAHQTVYAFAEPV 417
Query: 370 K 370
+
Sbjct: 418 E 418
>gi|355571405|ref|ZP_09042657.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
gi|354825793|gb|EHF10015.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
Length = 410
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 88 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 147
GCLG+C+YC T ARG L S ++E + ++A G E+ L+ +D A+GRD G +
Sbjct: 132 GCLGSCSYCVTHLARGKLVSRSLEDVTQEAARLVAAGAVELRLTGQDLSAWGRDTGQSPA 191
Query: 148 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 207
LL ++ A G M+R GM NP + + E+AE R P +++ LH+P+QSG++ VL
Sbjct: 192 DLLRSLDALC---GRFMIRAGMMNPATLFPVMDEVAEAFRLPKIFAALHLPIQSGAEKVL 248
Query: 208 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 267
S M R YT ++V+ VP + + TDIICG+PGET +DF++T+ L++ + +V
Sbjct: 249 SRMRRGYTQEQVVSIVERFEREVPALSLTTDIICGYPGETGDDFSETLALLQRIRPDRVI 308
Query: 268 ISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAAD 325
++++ PRPGT A K +P + K+RSR L E A +GRV + ITE
Sbjct: 309 VTRYSPRPGTRAWHEKDMPDRIKKERSRTLRVCAEEIARQKNAKWKGRVLPVMITEHVRP 368
Query: 326 GIHLVGHTKGYVQVLV 341
G L G T+ Y V++
Sbjct: 369 GTSL-GRTREYRAVVL 383
>gi|403384177|ref|ZP_10926234.1| hypothetical protein KJC30_05724 [Kurthia sp. JC30]
Length = 447
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 22/381 (5%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVR-LL 61
K+ + V GC Q S ++ + GV IV G Q +++ ++E E + VR ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRQKLLGLIEDYKVERQPINAVRNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S E +V + + ++
Sbjct: 127 KNRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEQVVKQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG+D+ NL +LL A+ E G LRI I +
Sbjct: 186 DAGYKEIVLTGIHTGGYGQDLKDYNLAMLLRAL--ETKVKGLKRLRISSIEASQITD--- 240
Query: 181 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ +VLR+ + + LH+P+QSGSD VL M R+YT+ F + L E++P + I +D+
Sbjct: 241 EVLDVLRNSKIIVNHLHIPIQSGSDTVLKRMRRKYTMEFFGQRLTQLKEVLPDLAITSDV 300
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGET+E+F +T N I++Y+F ++H+ F R GTPAARM+ +V V +R L
Sbjct: 301 IVGFPGETEEEFMETYNFIRDYEFAELHVFPFSKRTGTPAARMEDQVDEDVKNERVHRLL 360
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAADGI----HLVGHTKGYVQVLVPSTGNMLGTSA 352
S+ + E V + EI G L+GHT Y++V T +M+G
Sbjct: 361 SLNDQLAKQYASRFENEVLEVIPEEIVKAGEPNEGMLLGHTANYMKVAFEGTPDMIGQIV 420
Query: 353 LVKITSVGRWSVFGEVIKILN 373
VK+T G G+ +++++
Sbjct: 421 KVKVTQAGYPVSTGQFVRVMD 441
>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
Length = 429
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 167/301 (55%), Gaps = 16/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A V H +Y+F+H
Sbjct: 184 WDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELAAVFAEHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR + +T + ++TD I G+P ETDED +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIAETFDRELAYWTLSTDFIVGYPTETDEDHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
V + + E D + + Y Q++V + G G A VK+T+ F E +
Sbjct: 362 EV--LVVQEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVKVTAHQTVYAFAEPV 417
Query: 370 K 370
+
Sbjct: 418 E 418
>gi|423395390|ref|ZP_17372591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|423406265|ref|ZP_17383414.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
gi|401654801|gb|EJS72340.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|401660259|gb|EJS77741.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
Length = 450
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ DG LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
Length = 432
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 167/308 (54%), Gaps = 17/308 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL I E+ +G +R+GM NP + +E+A V H +Y+FLH
Sbjct: 184 WDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFAEHDEIYNFLHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL+ M R++ +S +R +V+T + + ++TD I GFP E D+D +++L
Sbjct: 242 PVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTEDDDDHEASMDL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA +K + K RS+ +T V EA +G
Sbjct: 302 LRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTELKMDVVGEAHESMVGT-- 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
R + + + E D + + Y QV+V + G G A V++TS F E +
Sbjct: 360 RRDVLVVEEGTGDSVKC--YDGAYRQVIVQNATDHGLEPGDFATVEVTSHQTVYAFAEPV 417
Query: 370 KILNQVDD 377
VDD
Sbjct: 418 DAA-AVDD 424
>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
Length = 429
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 166/295 (56%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A+V RH +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELADVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETD D +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYEEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|423612521|ref|ZP_17588382.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
gi|401246110|gb|EJR52462.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
Length = 450
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
Length = 417
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 168/299 (56%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVP 198
D G L A + EL +G +R+GM NP + +E+A+V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFAAYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ +S++ V+D + + ++TD I GFP ETD D +Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVSEYLEVIDAFDDALEYWTLSTDFIVGFPTETDRDHDQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + +V++++F RPGT AA MK + + K+RS+E+++ V EA+ +G E R
Sbjct: 302 RETRPEKVNVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIVGEAYEAMVG-ERR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + + AD + Y Q++V + G G +++T+ FGE +
Sbjct: 361 DDCLVVEDGTADSVKC--RDSAYRQLIVQNASEHGLEPGDFVDLEVTAHETMYAFGEPV 417
>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
Length = 416
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 173/302 (57%), Gaps = 18/302 (5%)
Query: 83 LPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+P+ VGCLG CT+C TK+ RG G S + +V V+ +A G KE++L+ +D YG
Sbjct: 119 VPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGAKEIYLTGQDVITYG 178
Query: 140 RDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSF 194
D+ G +LP LL I+ E+ +G +RIGM+ P + ++++ VY +
Sbjct: 179 FDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADRLLDIVKGDRRVYRY 236
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQ 253
H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDII GFPGE ++DF +
Sbjct: 237 FHLPVQSGSDKVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDIIVGFPGEAEDDFWE 296
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV-FEAFTPYLGME 311
+V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+ V G+
Sbjct: 297 SVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEVSLRVARLRNGLR 356
Query: 312 -GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSVGRWSVFGEV 368
G + + I E+ D +VG Y QV+V ++G V+I + G ++G++
Sbjct: 357 VGSRDVVLIDEV--DHGLVVGRASDYRQVVVKRGRGDGLIGQYREVQIVAAGAVYLYGDI 414
Query: 369 IK 370
++
Sbjct: 415 VE 416
>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
IH1]
gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
IH1]
Length = 428
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 192/389 (49%), Gaps = 39/389 (10%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH--- 56
M + I KS K +VVAGC+P+ R+ E G ++ ++ ++V + T H
Sbjct: 58 MISRIKHFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNI 117
Query: 57 ----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+ KL L P N + LPI+ GC+G CTYC K ARG L SY
Sbjct: 118 GGNNNSNVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNL 176
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
L+ + I GVK + ++S+DT YG D LP L+N I + DG +RIGM +
Sbjct: 177 LIKKAEEFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHA 233
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ + + E+ ++ V FLH+P+QSG D VL M R YT+ +F +V+ V
Sbjct: 234 KNVTQIMDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFIDIVNEFKRKVKD 293
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ TD+I GFP E +E+F T+ ++K+ +H +++ R T AA++K+V + V KK
Sbjct: 294 LNFNTDVIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTEAAKLKQVDTKVRKK 353
Query: 293 RS-------RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ----VLV 341
RS REL+ ++ Y+ G+ ++ ITE + KG V
Sbjct: 354 RSEILDKLRRELS--YKNNKNYI---GKTLKVLITE----------NNKGIAHNCKVVKF 398
Query: 342 PSTGNM-LGTSALVKITSVGRWSVFGEVI 369
S N+ +G +KIT + +FGE++
Sbjct: 399 NSDKNIKIGEFRKIKITDAKTFGLFGEIL 427
>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
Length = 417
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 157/274 (57%), Gaps = 13/274 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL AI DG +R+GM NP + +E+A V H +Y FLH
Sbjct: 184 WDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAVFAEHDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFPTETDRDHEQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K+RS+E+++ V +A+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDLVADAYADMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
R + + + E AD + Y Q++V + +
Sbjct: 360 REDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
13514]
Length = 416
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 173/302 (57%), Gaps = 18/302 (5%)
Query: 83 LPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+P+ VGCLG CT+C TK+ RG G S + +V V+ +A G KE++L+ +D YG
Sbjct: 119 VPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGAKEIYLTGQDVITYG 178
Query: 140 RDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSF 194
D+ G +LP LL I+ E+ +G +RIGM+ P + ++++ VY +
Sbjct: 179 FDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADRLLDIVKGDRRVYRY 236
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQ 253
H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDII GFPGE ++DF +
Sbjct: 237 FHLPVQSGSDRVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDIIVGFPGEAEDDFWE 296
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV-FEAFTPYLGME 311
+V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+ V G+
Sbjct: 297 SVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEVSLRVARLRNGLR 356
Query: 312 -GRVERIWITEIAADGIHLVGHTKGYVQVLVPS--TGNMLGTSALVKITSVGRWSVFGEV 368
G + + I E+ D +VG Y QV+V ++G V+I + G ++G++
Sbjct: 357 VGSRDVVLIDEV--DHGLVVGRASDYRQVVVKRGHGDGLIGQYREVQIVAAGAVYLYGDI 414
Query: 369 IK 370
++
Sbjct: 415 VE 416
>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
Length = 429
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + E+A V RH +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELAAVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETD D +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
ME]
gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
ME]
Length = 411
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 173/317 (54%), Gaps = 26/317 (8%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRLLH 62
S K ++VAGC+P+ ++ ++EG + ++ R E++++ L +G E L
Sbjct: 65 SLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKELY- 121
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
KKL L + K V LPI+ GCLG C+YC K ARG L SY E LV + ++
Sbjct: 122 -KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEELVK 174
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
G K + ++++DT YG D G NL LL + +G ++R+GM + ++ L EI
Sbjct: 175 GGAKCLLITAQDTACYGLDRGDNLANLLKDLCQ---IEGEFIMRVGMMHAKYLSPILDEI 231
Query: 183 AEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
E+ R + FLH+P+QSG D +L M R Y++ +F ++V V + TD+I
Sbjct: 232 IELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEFKRKVKDLCFTTDVIV 291
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301
GFPGET+E FN T+ ++++ K +H +++ R GT AARMK++ + + K+R+ L +
Sbjct: 292 GFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARMKQLDTKIRKRRTEILDKLR 351
Query: 302 EAFT-----PYLGMEGR 313
+ Y+G E R
Sbjct: 352 RELSYLNNKKYVGREMR 368
>gi|432332038|ref|YP_007250181.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
gi|432138747|gb|AGB03674.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
Length = 418
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 142/237 (59%), Gaps = 8/237 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V I+ + GC G CTYC T+ ARG L S+ + + +V A G E+ L+++D +YG
Sbjct: 131 VGIVQLAQGCNGTCTYCITRQARGPLRSFPLHEVRRQVAAYAACGAAEIQLTAQDVSSYG 190
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 199
+DIG++L LLN I P GS +R+GM NP +++ L I + ++ FLH+PV
Sbjct: 191 KDIGLSLAGLLNDIGD---PPGSYCIRVGMMNPATVMDDLDAIIDAFSAERIFRFLHLPV 247
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD +L M R+YT+ DF ++ + P + + TD+I GFPGET+EDF+ +++LI+
Sbjct: 248 QSGSDTILERMGRQYTVRDFCRIIAAFRKRYPEITVMTDMIAGFPGETEEDFSASIDLIR 307
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-----TPYLGME 311
+ +V+++++ RP TP ++ K + +V K RSR + S E P+LG E
Sbjct: 308 RLRPNKVNVTRYSKRPFTPLSQEKDILDSVKKNRSRIMLSCSEQVYAEVNRPWLGRE 364
>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
Length = 429
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 165/295 (55%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + +E+A V RH +Y+F+H
Sbjct: 184 WDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELAAVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETD D +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
Length = 450
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 198/381 (51%), Gaps = 27/381 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINGVGNIMKNRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL +LL + A++ G LRI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQITDEVIEVMDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 KVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ + +R L ++
Sbjct: 304 FPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQIDEEIKNERVHRLIALS 363
Query: 302 EAFTPYLG--MEGRVERIWITEI---AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ EG V + E ++D VG+T Y++V+ P+ M+G VKI
Sbjct: 364 DQLAKEYASQYEGEVLEVIPEESFKESSDSSLFVGYTDNYLKVVFPAAEEMVGQIVKVKI 423
Query: 357 TSVGRWSVFGEVIKILNQVDD 377
T G G+ ++ L+++++
Sbjct: 424 TKAGYPYNEGQFVRALDELNE 444
>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
Length = 423
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 154/289 (53%), Gaps = 9/289 (3%)
Query: 14 PLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKLP-AL 69
P VVAGC P+ R K ++VG + +DR+ E V L+G V L R+ +
Sbjct: 68 PTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGEREDIDWKA 127
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P+ N I+PI GC C YC K ARG+L S+ E ++ RV+ + G E+
Sbjct: 128 DAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELERGAVEIH 186
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL--R 187
L+++DT YG D G N+ LL +V +L +R+GM NP ++A++ R
Sbjct: 187 LTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLADLFASR 245
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+Y +H+PVQSG D VL MNR YT+ + V + TD+I GFPGET
Sbjct: 246 DDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIVGFPGET 305
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
+E F T+ ++ + +H S+F RPGTPAARM+ +VP V +RSR
Sbjct: 306 EEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVPEDVKLRRSR 354
>gi|347753157|ref|YP_004860722.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347585675|gb|AEP01942.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 450
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 197/375 (52%), Gaps = 23/375 (6%)
Query: 17 VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q +++ +E+ LK + ++ + +
Sbjct: 75 VTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAVKNIMKNRVYEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
++P ++ L I GC CT+C ARG + S E ++ + + ++ G KE+
Sbjct: 135 EVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQAQKLVNAGYKELV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG+D+ NL +LL + ++ G +RI + + E+ +V++H
Sbjct: 194 LTGIHTGGYGQDLKDYNLAMLLKDLEEKV--QGLKRVRISSIEASQLTD---EVIDVIKH 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
V +HVP+QSGSD VL M R+YT+ F + L E +PG+ + +D+I GFPGET
Sbjct: 249 SKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLALTSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R + ++ +
Sbjct: 309 EEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERVHRMIALSDQLAK 368
Query: 307 YLGMEGRVERIWI------TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ E + + E G++ G+T Y++V+ P+T +M+G VKIT G
Sbjct: 369 EYASQFENEVLEVIPEEPFKEDPESGLY-EGYTDNYLKVVFPATPDMVGKLVKVKITKAG 427
Query: 361 RWSVFGEVIKILNQV 375
+ +++++ V
Sbjct: 428 YPYNEAQFVRVMDDV 442
>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
Length = 400
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 170/323 (52%), Gaps = 19/323 (5%)
Query: 51 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 110
+ LK E R + L +++ ++ + +PIN GC G+C +C + ARG L S +
Sbjct: 91 QVLKPREFRSFYEGDLDGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGI 146
Query: 111 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 170
+ +V +V + +KE+ +SS DT AYG+DIG +L L+N I + D LR+GM
Sbjct: 147 DKIVNQVNMELDRNIKEIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGML 203
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
P + L ++ + RH V+ FLH+PVQS + VLSAMNREYT+ + V +
Sbjct: 204 EPRNTYDILDKLVDAYRHDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQKFHDAF 263
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
P M IATDII G+ ++ F +T+ +++Y +++++F PRP T + S ++
Sbjct: 264 PDMSIATDIILGYYNDSRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPLNSNLL 323
Query: 291 KKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 345
K+ S E+ S+ + YLG E E++ ITE +G +VG Y V++ G
Sbjct: 324 KEWSNEIISLHREQMEKKLDSYLGRE---EKVLITEKGKNGT-MVGRDINYRPVVLK--G 377
Query: 346 NMLGTSAL-VKITSVGRWSVFGE 367
N S + I S G + GE
Sbjct: 378 NYEKYSEIKCTIVSHGSNYLIGE 400
>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 434
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 204/383 (53%), Gaps = 31/383 (8%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S +VV GC PQ ++++++EGV I VG + +++VE V E LK +
Sbjct: 63 AKKTSPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QK 115
Query: 64 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 111
KK+ A++ + +R+ F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKILAVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLS 174
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 170
S++ V+ + ++G KE ++ + AYG+D+ + + L ++ E+ + +R+
Sbjct: 175 SILDEVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSL 232
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
P + E I +++ + LH+ +QSGSD +L MNR YT ++R +V+ +
Sbjct: 233 EPIVMKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYW 290
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 289
+ TDII GFPGE+DEDF +TV +KE F ++H+ +F P+ GT A M +V SA
Sbjct: 291 NDVAFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAE 350
Query: 290 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+KRS L SV +F + EG++ + I E ++ + G++ Y++ LVP T ++
Sbjct: 351 KEKRSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKTESI 410
Query: 348 -LGTSALVKITSVGRWSVFGEVI 369
+G VK+ V G++I
Sbjct: 411 RVGEIYKVKVKEAFEQYVIGDII 433
>gi|423452386|ref|ZP_17429239.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
gi|401140024|gb|EJQ47581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
Length = 450
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE + + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 434
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 207/389 (53%), Gaps = 35/389 (8%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGH 56
I+KCK ++A GC PQ S+D + E++ V+I+ G + Q+ + + ET G
Sbjct: 59 FISKCKKINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GK 116
Query: 57 EVRLLHRKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+V + L + + ++K + I GC CTYC ARG + S
Sbjct: 117 QVIKVDDNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRK 176
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTN 171
+ VR+++++G KEV L+ +T +YG D+G+++ ++ L ++ E+ DG +R+G +
Sbjct: 177 IFDEVRSLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVD 234
Query: 172 PPF----ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
P F I+E + +I +++ H H+ +QSG D+VL M R+Y +S ++ VV+ L
Sbjct: 235 PEFFTTEIVERMSKIKKLMPH------FHLSLQSGCDSVLKRMRRKYDISLYKKVVEDLR 288
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 286
+ + I TDII GFPGETD++FN+T N +K K +H+ ++ R GT AA M+ +V
Sbjct: 289 REIEDVSITTDIIVGFPGETDDEFNETYNFLKNIKLQDMHVFKYSKRNGTKAAEMENQVD 348
Query: 287 SAVVKKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 341
+ +KRS+ L + + YLG ++ ++ TE+ +D + G+TK Y++V++
Sbjct: 349 VHIKEKRSKSLIDLNKLNKIDFQKKYLGQT--LDVLYCTEL-SDNNGVYGYTKNYIKVVL 405
Query: 342 PSTGNMLGTSALVKITSVGRWSVFGEVIK 370
LG +I + + G+ +K
Sbjct: 406 NDEKKYLGKIVSTRIVDLENDHLIGQALK 434
>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217961800|ref|YP_002340370.1| MiaB family RNA modification protein [Bacillus cereus AH187]
gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|375286316|ref|YP_005106755.1| hypothetical protein BCN_4222 [Bacillus cereus NC7401]
gi|384182130|ref|YP_005567892.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402555555|ref|YP_006596826.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
gi|423354803|ref|ZP_17332428.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|423373811|ref|ZP_17351150.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|423570550|ref|ZP_17546795.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|423574010|ref|ZP_17550129.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|423604040|ref|ZP_17579933.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354843|dbj|BAL20015.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085807|gb|EJP94041.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|401095212|gb|EJQ03272.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|401203746|gb|EJR10581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|401212579|gb|EJR19322.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|401245726|gb|EJR52079.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|401796765|gb|AFQ10624.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
Length = 450
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ DG LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
Length = 429
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 164/295 (55%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + E+A V RH +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELAAVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETD D +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
Length = 428
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 187/356 (52%), Gaps = 14/356 (3%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+ ++
Sbjct: 67 KNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIKVDNVM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +K L++ + + + L I GC CTYC +ARG + S ES++ + + ++
Sbjct: 127 NLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQAQKLV 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+G E+ L+ T YG D+ + +V + G LRI I + + +
Sbjct: 185 DNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQISDEIID 242
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P + TD+I
Sbjct: 243 L--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFTTDVIV 300
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+ L +
Sbjct: 301 GFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERANRLLQL 360
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ ++ + + + DG +L+GH Y++V V + N++G +KI
Sbjct: 361 SKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIKI 416
>gi|423669894|ref|ZP_17644923.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|423673900|ref|ZP_17648839.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
gi|401299021|gb|EJS04621.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|401310266|gb|EJS15591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
Length = 450
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V +R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNERVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
Length = 442
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+AEV + +Y F+H
Sbjct: 184 WDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEVFADNEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +VDT + + ++TD I GFP ETD+D ++++L
Sbjct: 241 PVQSGSDEVLEDMRRQHRVEKFREIVDTFDDRLDHWTLSTDFIVGFPTETDDDHERSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + + K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G +++T FGE +
Sbjct: 359 TFEVLVVEEGTGDSVKC--RDGAYRQIIVQNATERGVDVGDFLTIEVTGHNTVYAFGEPV 416
Query: 370 KILNQ 374
++
Sbjct: 417 AAADR 421
>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
Length = 450
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 201/385 (52%), Gaps = 29/385 (7%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ + GV IV G Q +++E +E+ + + ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINAVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + ++ + + ++
Sbjct: 127 KNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIRQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ NL +LL + A++ G LRI I + +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQITDEVI 243
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E+ + V+RH LH+P+QSGS+ VL M R+YT+ F +D L E +PG+ +
Sbjct: 244 EVMDKSEVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALPGLAVT 297
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ ++ + +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIKNERVH 357
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLG 349
L S+ + E V + EI + G++ VG+T Y++V+ P++ M+G
Sbjct: 358 RLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLY-VGYTDNYLKVVFPASEEMVG 416
Query: 350 TSALVKITSVGRWSVFGEVIKILNQ 374
VKI+ G G+ ++++++
Sbjct: 417 KIVKVKISKAGYPFNEGQFVRVVDE 441
>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
Length = 417
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +E+A V H +Y FLH
Sbjct: 184 WDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAAVFAEHDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSNDVLGDMRRQHQVDEYLEVVETFDDALEYWTLSTDFIVGFPTETDHDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + + K+RS+E+++ V +A+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKRELVADAYAEMVG-ET 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
R + + + E AD + Y QV+V + G G ++IT+ FG+ I
Sbjct: 360 REDVLVVEEGTADSVKC--RDSAYRQVIVQNASEHGLEPGDFVDLEITAHETMYAFGKPI 417
>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
Length = 429
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 164/295 (55%), Gaps = 14/295 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I E+ DG +R+GM NP + E+A V RH +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELAAVFARHDKLYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V+T + ++TD I G+P ETD D +++ L
Sbjct: 242 PVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVGYPTETDADHERSMEL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA +K + + K+RS+E++ V A+ +G E
Sbjct: 302 LREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKMDIVAAAYDEMVGTER 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
V + + E D + + Y Q++V +T + L ++T +V+
Sbjct: 362 DV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARVTVTAHQTVYA 412
>gi|365830337|ref|ZP_09371918.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
gi|365263441|gb|EHM93274.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
Length = 428
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 187/356 (52%), Gaps = 14/356 (3%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+ ++
Sbjct: 67 KNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIKVDNVM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +K L++ + + + L I GC CTYC +ARG + S ES++ + + ++
Sbjct: 127 NLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQAQRLV 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+G E+ L+ T YG D+ + +V + G LRI I + + +
Sbjct: 185 DNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQISDEIID 242
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P + TD+I
Sbjct: 243 L--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFTTDVIV 300
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+ L +
Sbjct: 301 GFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERANRLLQL 360
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ ++ + + + DG +L+GH Y++V V + N++G +KI
Sbjct: 361 SKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIKI 416
>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
Length = 417
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + EL +G +R+GM NP + +E+A+V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVFAEYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ ++D E + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYLEIIDAFDEALDYWTLSTDFIVGFPTETDHDHAQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + +V++++F RPGT AA MK + + K+RS+E+++ V EA+ +G E R
Sbjct: 302 RETRPEKVNVTRFSKRPGTDAAEMKGLGGTLKKERSKEMSAAKRDIVGEAYADMVG-ETR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + E AD + Y Q++V + G G +++T+ FGE +
Sbjct: 361 EDVLVVEEGTADSLKC--RDSAYRQIIVQNATEHGLEPGDFVDLEVTAHETMYAFGEPV 417
>gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 453
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 192/381 (50%), Gaps = 18/381 (4%)
Query: 9 KSAKKPLV-VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH-- 62
K+ KPL+ V GC+ Q G+ L+ V +V G + I V + +E ++ V L
Sbjct: 72 KTKGKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRHKTVLYLDED 131
Query: 63 -RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
R+ + D P +R N + + I GC CTYC + RG S ++ V ++
Sbjct: 132 PREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRRPGEILKEVSELV 191
Query: 122 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
DGV EV L ++ +YG+D+ LL VA++P G +R ++P E +
Sbjct: 192 DDGVLEVTLLGQNVDSYGKDLKESYRFSNLLQD-VAKVP--GLLRVRFTTSHPRDFTEDV 248
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E C +++P+QSGSD +L MNR YT+ D+ ++ L E +P + I +D+
Sbjct: 249 IEAMAEESKIC--PAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREALPEVSITSDL 306
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGET+EDF T+ ++K +F VH + + PR GTPAA M ++P K+R +
Sbjct: 307 IVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEEKKRRLSIVN 366
Query: 299 SVFEA--FTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVK 355
+ +A F +EG+ + + + A G ++ G T VLVP +MLG V+
Sbjct: 367 ELQDAISFKKNKILEGKFFEVLLDDFAPKGKGMLQGRTPTDKVVLVPGDESMLGKLCEVR 426
Query: 356 ITSVGRWSVFGEVIKILNQVD 376
IT W ++GE++ + D
Sbjct: 427 ITGASNWYLYGEIVSFRDFSD 447
>gi|423470532|ref|ZP_17447276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
gi|402436198|gb|EJV68230.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
Length = 450
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE + + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E DG VG+T Y++++ + ++G +KIT
Sbjct: 367 AKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKIKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|374626085|ref|ZP_09698499.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
gi|373914611|gb|EHQ46426.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
Length = 428
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 187/356 (52%), Gaps = 14/356 (3%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+ ++
Sbjct: 67 KNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIKVDNVM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +K L++ + + + L I GC CTYC +ARG + S ES++ + + ++
Sbjct: 127 NLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQAQRLV 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+G E+ L+ T YG D+ + +V + G LRI I + + +
Sbjct: 185 DNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQISDEIID 242
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P + TD+I
Sbjct: 243 L--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFTTDVIV 300
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+ L +
Sbjct: 301 GFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKGQVNDQIKHERANRLLQL 360
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ ++ + + + DG +L+GH Y++V V + N++G +KI
Sbjct: 361 SKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIKI 416
>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 417
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 191/369 (51%), Gaps = 29/369 (7%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRKK 65
KS K +VVAGC+ + + K++E ++ D ++ E L G HE + KK
Sbjct: 69 KSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNKK 119
Query: 66 LPALDLP---KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
++L K + LPI GC+G C+YC K ARG L SY+ E +V + +I
Sbjct: 120 ENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELIN 179
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
G K + ++++DT YG DI NLP L+N + + +G ++RIGM + + + L ++
Sbjct: 180 SGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDDL 236
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
E + V LH+P+QSG D VL AM R YT+ +F ++V+ + + + TDII G
Sbjct: 237 IEAYKDEKVAKLLHLPLQSGDDGVLKAMKRGYTVDEFISIVNEFRKKIEDLTFVTDIIVG 296
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L +
Sbjct: 297 FPTETEEAFENTLEVLRKIKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILDKLRR 356
Query: 303 AFTPYLGME---GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ Y+ + G+ ++ ITE G T + V + +G +KIT
Sbjct: 357 ELS-YMNNKKYVGKKMKVLITEENK------GITHNFKVVRFNEDAD-IGAFKEIKITDA 408
Query: 360 GRWSVFGEV 368
+ +FG +
Sbjct: 409 KTFGLFGNL 417
>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|365158901|ref|ZP_09355090.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423411893|ref|ZP_17389013.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|423432321|ref|ZP_17409325.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|363626189|gb|EHL77190.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401103961|gb|EJQ11938.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|401117077|gb|EJQ24915.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
Length = 450
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ DG LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|415885569|ref|ZP_11547497.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
gi|387591238|gb|EIJ83557.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
Length = 450
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 198/380 (52%), Gaps = 23/380 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEILAIPGVDIVVGTQDRAKMLEYIEKYKKERQPINAVGNIMKNRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S + ++ + + ++ G KE
Sbjct: 133 ELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPQEVIRQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N +LL + A++ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAMLLRDLEAQV--KGLKRLRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I GFPG
Sbjct: 247 DKSKVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLKEALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMADQIDEEVKNERVHRLIALSDQL 366
Query: 305 TPYLG--MEGRV-ERIWITEIAAD---GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
EG V E I D G++ G+T Y++V+ P+T M+G VKIT
Sbjct: 367 AKEYASQFEGEVLEVIPEERFKGDPESGLY-EGYTDNYLKVVFPATEEMIGKIVKVKITK 425
Query: 359 VGRWSVFGEVIKILNQVDDK 378
G G+ +++L++ +++
Sbjct: 426 AGYPYNEGQFVRVLDEANEQ 445
>gi|423521831|ref|ZP_17498304.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
gi|401176493|gb|EJQ83688.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
Length = 450
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + A++ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|423368361|ref|ZP_17345793.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|423489494|ref|ZP_17466176.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
gi|423495217|ref|ZP_17471861.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|423497989|ref|ZP_17474606.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|423519010|ref|ZP_17495491.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|423591694|ref|ZP_17567725.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|423598373|ref|ZP_17574373.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|423660845|ref|ZP_17636014.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
KBAB4]
gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|401080960|gb|EJP89241.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|401151310|gb|EJQ58762.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|401160065|gb|EJQ67444.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|401161276|gb|EJQ68643.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|401231827|gb|EJR38329.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|401236643|gb|EJR43100.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|401300886|gb|EJS06475.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|402431730|gb|EJV63794.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
Length = 450
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
768-20]
gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
768-20]
Length = 416
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 196/365 (53%), Gaps = 35/365 (9%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV-EETLKGHEVRLLHR 63
+ + S K LVVAGC+ + ++Q+ + E++ E ++G E R +
Sbjct: 57 LGQLASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS- 105
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTV 120
LP D + +P+ VGCLG CT+C TK+ RG G S + +V V+
Sbjct: 106 -VLPEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKA 158
Query: 121 IADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+A G KE++L+ +D YG D G NLP LL I++++ +G +RIGM+ P
Sbjct: 159 VAKGAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFG 216
Query: 177 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQ 234
+ I +++ R VY + H+PVQSGSD VL M R YT ++R ++ + EL +
Sbjct: 217 KFADAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGLISKIKRELNDDVF 276
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ATD+I GFPGET+EDF T+ L++E +F +VH++++ RP T A+ M +++P AV K+R
Sbjct: 277 VATDVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTEASVMPEQIPDAVKKQR 336
Query: 294 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
S+ + + A + GR ++ + E+ D +VG Y QV+V LG+
Sbjct: 337 SKIASELALKIAHARNSRLIGRRLKVLVDEV--DHGLVVGRAPDYRQVVVGRGEGPLGSF 394
Query: 352 ALVKI 356
V+I
Sbjct: 395 LEVEI 399
>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
Length = 450
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
Length = 417
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L LL I A DG +R+GM NP I +E+A+V + +Y FLH
Sbjct: 184 WDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELADVFAANDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + ++ VVDT + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVQEYLEVVDTFDDTLDYWTLSTDFIVGFPTETDHDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K+RS+E++ V +A+ +G
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSDLKRDLVADAYAEMVGQR- 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
R + + + E AD + Y Q++V + G G ++IT+ FG+ +
Sbjct: 360 RDDCLVVEEGTADSVKC--RDSAYRQIIVQNASEHGLEPGDFVDLEITAHETMYAFGDPV 417
>gi|423512424|ref|ZP_17488955.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
gi|402449395|gb|EJV81232.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
Length = 450
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASRFEGEVLEIIPEETFKDGDRKGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|423558106|ref|ZP_17534408.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
gi|401191374|gb|EJQ98396.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
Length = 450
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + A++ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
Length = 417
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 155/268 (57%), Gaps = 11/268 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ +G +R+GM NP + +E+A V H +Y FLH P
Sbjct: 184 WDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAVFAEHDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGS+ VL M R++ +S++ VV+T + + ++TD I GFP E+D D Q++ L+
Sbjct: 242 VQSGSNDVLGDMRRQHQVSEYLEVVETFDDALEYWTLSTDFIVGFPTESDHDHAQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + + K+RS+E+++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIVADAYADMVG-ETR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLV 341
+ + + E AD + Y QV+V
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQVIV 386
>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
motif-related TRAM [Methanococcus maripaludis S2]
Length = 425
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 12/308 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEET 52
M + I KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 57 MISRIEYFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEK 116
Query: 53 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
L KL + KV + LPI GCLG+CTYC K ARG+L SY +
Sbjct: 117 NNESTQNLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDL 175
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V + ++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM +
Sbjct: 176 IVKKAEELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHA 232
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
F L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ +
Sbjct: 233 KFAEPILDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKN 292
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ TD+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+
Sbjct: 293 LNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKE 352
Query: 293 RSRELTSV 300
RS L +
Sbjct: 353 RSEILNEL 360
>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
Length = 414
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 160/297 (53%), Gaps = 11/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +E V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAGAKEIRVTGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A DG +R+GM NP + +E+A+V +Y+FLH
Sbjct: 182 WDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELADVFAEEEKLYNFLHA 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGS+ VL M R++ +S+FR VV+T + + +ATD I GFP ETD D Q++ L
Sbjct: 239 PVQSGSNDVLGDMRRQHQVSEFRDVVETFDDRLDHWTLATDFIVGFPSETDADHEQSMAL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT--PYLGMEGRVE 315
++E ++++++F RPGT AA MK + K+RS+ ++ + Y M G
Sbjct: 299 LRETTPERINVTRFSKRPGTDAAEMKGLGGTKKKERSKAMSDLKMDVVGDAYESMVGERH 358
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ + E G + + + Y QV++ P G G V+IT FG+ +
Sbjct: 359 EVMVVEHGT-GDSVKCYDEAYRQVIIQDAPGYGVEPGDLVDVEITGQNTVYAFGKPV 414
>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
gi|167705625|gb|EDS20204.1| tRNA methylthiotransferase YqeV [Clostridium ramosum DSM 1402]
Length = 428
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 186/356 (52%), Gaps = 14/356 (3%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L E+ ++
Sbjct: 67 KNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLGTGEMVIKVDNVM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +K L++ + + + L I GC CTYC +ARG + S ES++ + + ++
Sbjct: 127 NLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQAQKLV 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+G E+ L+ T YG D+ + +V + G LRI I + + +
Sbjct: 185 DNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQISDEIID 242
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P + TD+I
Sbjct: 243 L--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFTTDVIV 300
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+ L +
Sbjct: 301 GFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERANRLLQL 360
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ ++ + + + DG +L+GH Y++V V + N++G +KI
Sbjct: 361 SKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIKI 416
>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423634866|ref|ZP_17610519.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401278852|gb|EJR84782.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
Length = 450
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
Length = 417
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 157/274 (57%), Gaps = 13/274 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL AI DG +R+GM NP + +E+A V + +Y FLH
Sbjct: 184 WDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAVFAEYDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFPTETDRDHEQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K+RS+E+++ V +A+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDLVADAYADMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
R + + + E AD + Y Q++V + +
Sbjct: 360 REDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 201/376 (53%), Gaps = 23/376 (6%)
Query: 12 KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLLHRK 64
KKP + V GC+ Q G L++ V +V G I + +++EE L+G++ V +L
Sbjct: 70 KKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVEILEDI 129
Query: 65 KLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+L P VR N++ + + GC CTYC + RG S + ++ V+ +I
Sbjct: 130 DQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQEVQWLI 189
Query: 122 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH-L 179
DGVKE+ L ++ AYG+D+G V LL A VA++ +G +R +P + E +
Sbjct: 190 DDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDLDEETI 246
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
K +AE+ P + LH+P+Q+GSD +L AM R YT ++ ++ L + +P + ++TDI
Sbjct: 247 KAMAEI---PQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKKYIPDISLSTDI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV--PSAVVKKRSREL 297
I GFPGET ED+ +T+ ++KE ++ QV ++ PRPGTPAA+M P + K + +
Sbjct: 304 IVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPMTEDPKTLSKWLNDLI 363
Query: 298 TSVFE-AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
E F L EG+ + + E VG T+ V + N+LG VK+
Sbjct: 364 LMQKEITFKKNLQYEGKTVEVLVEEEKEG--RFVGRTRTNKLVHIEGRNNLLGEIVDVKV 421
Query: 357 TSVGRWSVFGEVIKIL 372
T V R+S+ GE I+ L
Sbjct: 422 TKVNRFSLEGEAIEQL 437
>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
gi|218899478|ref|YP_002447889.1| MiaB family RNA modification protein [Bacillus cereus G9842]
gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|423358653|ref|ZP_17336156.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|423385812|ref|ZP_17363068.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|423426443|ref|ZP_17403474.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|423437756|ref|ZP_17414737.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|423503004|ref|ZP_17479596.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|423527831|ref|ZP_17504276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|423561222|ref|ZP_17537498.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|434377478|ref|YP_006612122.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|449091273|ref|YP_007423714.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|401084525|gb|EJP92771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|401111190|gb|EJQ19089.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|401120911|gb|EJQ28707.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|401201479|gb|EJR08344.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|401635868|gb|EJS53623.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|401876035|gb|AFQ28202.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|402451494|gb|EJV83313.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|402459225|gb|EJV90962.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|449025030|gb|AGE80193.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 450
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
Length = 450
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVS--GLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++V+ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
Length = 417
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 153/269 (56%), Gaps = 22/269 (8%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKELRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL+ I +G +R+GM NP + +E+A V + +Y FLH
Sbjct: 184 WDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFADNEELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ VV+T + +P ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVSEYVEVVETFDDALPYWTLSTDFIVGFPTETDHDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERI 317
++E + ++++++F RPGT AA MK + + K+RS E++ V+R
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSEMSE--------------VKRE 346
Query: 318 WITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ E AD +VG T+ V V+ TG+
Sbjct: 347 LVREAYAD---MVGETREDVLVVEEGTGD 372
>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
Length = 452
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 34/390 (8%)
Query: 11 AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRKK 65
+K+ + V GC+ Q G + + EL+ + +V G + + ++E L+ GH+V +L
Sbjct: 75 SKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALEEGGHQVEVLDAAS 134
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+LP R +++ LPI +GC C+YC + RG S +E +V +A GV
Sbjct: 135 SFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLEDIVAEAERYVAAGV 194
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+ L ++ +YGRD+ P + A L G LR ++P + + +
Sbjct: 195 KEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHPKDLNDEVVGRFAT 252
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP + ++TDII GFPG
Sbjct: 253 LR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPDIALSTDIIVGFPG 310
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV---- 300
ET +DF T L+ E + QV + R GTPAA M P V+++R L +
Sbjct: 311 ETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQQRFDRLVDLVQQR 370
Query: 301 -FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG-----NML 348
FEA LG +EG +R D L G + V P+ ++
Sbjct: 371 AFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVHAPAPAGVRAEDLA 422
Query: 349 GTSALVKITSVGRWSVFGEVIKILNQVDDK 378
G++ V++ W + GE++ + D +
Sbjct: 423 GSTVRVRVDEAKTWYLAGEIVDGPDAADGR 452
>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|423440940|ref|ZP_17417846.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|423448892|ref|ZP_17425771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|423464005|ref|ZP_17440773.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|423533368|ref|ZP_17509786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
gi|423541377|ref|ZP_17517768.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|401129486|gb|EJQ37169.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|401172565|gb|EJQ79786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|402417601|gb|EJV49901.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|402420272|gb|EJV52543.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|402463587|gb|EJV95287.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASRFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|423377832|ref|ZP_17355116.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
gi|423547613|ref|ZP_17523971.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|423622602|ref|ZP_17598380.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|401179334|gb|EJQ86507.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|401260722|gb|EJR66890.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|401636098|gb|EJS53852.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 427
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 50 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 109
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 110 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 168
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 169 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 223
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 224 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 283
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 284 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 343
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 344 AKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 403
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 404 GYPYNEAQFVRVL 416
>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
Length = 425
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 186/369 (50%), Gaps = 17/369 (4%)
Query: 9 KSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEVRL 60
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E L
Sbjct: 65 KSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQNL 124
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
KL + KV + LPI GCLG+CTYC K ARG+L SY + +V + +
Sbjct: 125 NFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAEEL 183
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F L
Sbjct: 184 VKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPILD 240
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ E + V FLH+P+QSG + VL MNR YT+ ++ +V++ + + TD+I
Sbjct: 241 ELIESFKSEKVVKFLHLPIQSGDNQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTDVI 300
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L +
Sbjct: 301 VGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILNEL 360
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ Y + + + + D + + + K ++ +G VKIT
Sbjct: 361 RRELS-YENNKRHIGETFEILVTKDNMGVTDNCKN----VIFEESAKIGEFKRVKITGAK 415
Query: 361 RWSVFGEVI 369
+ + G++I
Sbjct: 416 TFGLSGKLI 424
>gi|402564224|ref|YP_006606948.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
gi|401792876|gb|AFQ18915.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|387929785|ref|ZP_10132462.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
gi|387586603|gb|EIJ78927.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 200/380 (52%), Gaps = 23/380 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEILAIPGVDIVVGTQDRVKMLEHIEQYKKERQPINAVGNIMKNRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ NL LL + A++ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAKLLRDLEAQVK--GLKRLRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I GFPG
Sbjct: 247 DKSEVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERINRLKEALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R L ++ +
Sbjct: 307 ETEEEFMETYNFVKEHKFSELHVFPYSKRTGTPAARMENQIDEEVKNERVHRLIALSDQL 366
Query: 305 TPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
EG+V + E G++ G+T Y++++ P++ +M+G VKIT
Sbjct: 367 AKEYASQFEGQVLEVIPEERYKEAPESGLY-EGYTDNYLKLVFPASEDMVGKIVKVKITK 425
Query: 359 VGRWSVFGEVIKILNQVDDK 378
G G+ +K+L+++ ++
Sbjct: 426 AGYPYNEGQFVKVLDEIHEQ 445
>gi|423483893|ref|ZP_17460583.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
gi|401141444|gb|EJQ48999.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 193/364 (53%), Gaps = 19/364 (5%)
Query: 17 VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLLHR--KKLPALD 70
V GC+ Q G L++ + +V G I + +++EE G++ V +L + LD
Sbjct: 77 VCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVEILEEIDENENLLD 136
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
P VR NK+ + + GC CTYC RG S + ++ V+ ++ DGVKE+
Sbjct: 137 QFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILREVQFLVEDGVKEIH 196
Query: 130 LSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH-LKEIAEVLR 187
L ++ AYG+D+G V LL A VA +P G +R +P + E +K +A++
Sbjct: 197 LIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDLDEDTIKVMADL-- 251
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH+P+Q+GSD VL AM+R YT ++ +D L + +P + ++TDII GFPGET
Sbjct: 252 -PQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKYIPDIALSTDIIVGFPGET 310
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKRSRELTSVFE--AF 304
ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + K +L ++ + F
Sbjct: 311 YEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTESPETISKWLNDLINIQKDITF 370
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
L EG+ + I E+ +G L G T+ V V +G VKI V R+S+
Sbjct: 371 KKNLSYEGKTVEVLIEEVNEEG-KLTGRTRTNKLVHVDGPQEYVGYIVNVKIEKVNRFSL 429
Query: 365 FGEV 368
G +
Sbjct: 430 EGRI 433
>gi|150401611|ref|YP_001325377.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
gi|150014314|gb|ABR56765.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
Length = 449
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 9/238 (3%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
L +++ N + LPI+ GC G CTYC K ARG L SY + ++ + + + +GVK++ +
Sbjct: 156 LTQLKPNNLIMPLPISEGCTGKCTYCIVKIARGRLASYNPDKIINKAKEFVDNGVKQMLI 215
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---TNPPFILEHLKEIAEVLR 187
+S+DT YG D LP LLN I G +RIGM N P I++ E+ + +
Sbjct: 216 TSQDTACYGFDKNTTLPTLLNEICQ---IKGDFNIRIGMMHAKNVPMIID---ELIDRYK 269
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ F H+P+QSG D VL AM REYT+ ++ + + + TD+I GFP ET
Sbjct: 270 DDKITKFFHLPIQSGDDDVLRAMKREYTVDEYMDIAMEFKRKIKDLNFNTDVIVGFPTET 329
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
+++FN T+ L+K+ K +H +++ R GT A R+K+V + + K+R + L + + F+
Sbjct: 330 EDNFNNTIELLKKLKPDAIHGAKYTQRKGTEADRLKQVDTKIRKERMKILDKLRKEFS 387
>gi|336114420|ref|YP_004569187.1| MiaB family RNA modification protein [Bacillus coagulans 2-6]
gi|335367850|gb|AEH53801.1| RNA modification enzyme, MiaB family [Bacillus coagulans 2-6]
Length = 450
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 195/375 (52%), Gaps = 23/375 (6%)
Query: 17 VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q +++ +E+ LK + ++ + +
Sbjct: 75 VTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAVKNIMKNRVYEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
++P ++ L I GC CT+C ARG + S E ++ + + ++ G KE+
Sbjct: 135 EVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQAQQLVDAGYKELV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG+D+ NL +LL + E G +RI + + E+ V++H
Sbjct: 194 LTGIHTGGYGQDLKDYNLAMLLRDL--EEKVQGLKRVRISSIEASQLTD---EVIGVIKH 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
V +HVP+QSGSD VL M R+YT+ F + L E +PG+ + +D+I GFPGET
Sbjct: 249 SKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLALTSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R + ++ +
Sbjct: 309 EEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERVHRMIALSDQLAK 368
Query: 307 YLGMEGRVERIWI------TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ E + + E G++ G+T Y++V+ P+T +M+G VKIT G
Sbjct: 369 EYASQFENEVLEVIPEEPFKEDPESGLY-EGYTDNYLKVVFPATPDMVGKLVKVKITKAG 427
Query: 361 RWSVFGEVIKILNQV 375
+ +++++ V
Sbjct: 428 YPYNEAQFVRVMDDV 442
>gi|228967379|ref|ZP_04128413.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792305|gb|EEM39873.1| hypothetical protein bthur0004_41810 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 386
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 9 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVVRNIMKTRVYE 68
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 69 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 127
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 128 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 182
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 183 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 242
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 243 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 302
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 303 AKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 362
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 363 GYPYNEAQFVRVL 375
>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
Length = 478
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 205/412 (49%), Gaps = 22/412 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPD 411
G + +++L D K ++RI ++ + S E + N D
Sbjct: 427 GYPYNEAQFVRVLED-DVKKGISKRIKKSMQTETICMLSFFVEKLSTENVRD 477
>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
Length = 450
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ NL LL + AE+ +G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKNYNLAGLLRDMEAEV--NGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM ++P V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++V+ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
Length = 426
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 16/280 (5%)
Query: 52 TLKGHEVRLLHRKKLPA-----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 106
TL+ +R++ ++ + LD K++ ++ +PIN GC G C +C + +RG L
Sbjct: 109 TLESENIRVIKPREFRSFYTGTLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLL 168
Query: 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 166
S + E +VG+VR I G++E+ ++S DT AYG+DI +L L+N+I D MLR
Sbjct: 169 SRSPEKIVGQVRMQIESGIREIRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLR 225
Query: 167 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 226
+GM P + L+++ + ++ V+ FLH+PVQSG + +L +MNREY + + V+
Sbjct: 226 VGMMEPRNTYDILEKLIDAYKNDKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHVIKRF 285
Query: 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 286
E P M +TDII G+ E E T I+ Y ++I++F PRP TP K +P
Sbjct: 286 KEEFPDMVFSTDIIAGYYTEDSESMENTYKFIETYMPDIINITRFSPRPYTPDFSRKTMP 345
Query: 287 SAVVKKRSRELTSVFEAFTPYLG-----MEGRVERIWITE 321
S + K+ S++ + E Y+ GR+ + +TE
Sbjct: 346 SNITKEFSKK---IMEMHKEYMDEKLSRYHGRMLNVMVTE 382
>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|384188384|ref|YP_005574280.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676699|ref|YP_006929070.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452200776|ref|YP_007480857.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175828|gb|AFV20133.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452106169|gb|AGG03109.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 450
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|423615348|ref|ZP_17591182.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
gi|401261027|gb|EJR67194.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 185/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ DG LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GT AARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTAAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ + +G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEEFIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
Length = 417
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 16/297 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L +LL+ I E+ +G +R+GM NP + +E+A+V + +Y+F+H
Sbjct: 184 WDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQVFAENDELYNFIHA 241
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGS+ VL M R++ + ++ +V+T E + ++TD I GFP ETD+D Q++ L
Sbjct: 242 PVQSGSNDVLGDMRRQHQVEEYVEIVETFDEYLDYWTLSTDFIVGFPTETDDDHEQSMAL 301
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RP T AA+MK + K+RS+E++ V A+ +G E
Sbjct: 302 LRETRPEKLNVTRFSKRPNTDAAKMKGLGGTKKKERSKEMSELKMDIVGAAYDEMVGTEK 361
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFG 366
RV + + E D + + Y Q++V + G G V++TS FG
Sbjct: 362 RV--MVVEEGTGDSVKC--RDEAYRQIIVQNATEHGIEPGDFLDVEVTSHQTVYAFG 414
>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
Length = 451
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 163/297 (54%), Gaps = 10/297 (3%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRKKL 66
K+ + + GC+ Q G + + ++ V +V G Q I+R+ ++ L GH +
Sbjct: 83 KRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLSRGGHIAEVQEESDT 142
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+ DLP R + + LPI VGC CTYC + RG S +ES+V + ++A+GV+
Sbjct: 143 FSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIESVVADAQALVAEGVQ 202
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+ L ++ +YGRD+ P + ++ + G LR ++P + + + E L
Sbjct: 203 EITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHPKDLTDEVIEAFGTL 260
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ + LH+PVQSGSDA+L M+R YT+ + ++D L P + ++TDII GFPGE
Sbjct: 261 GN--LMPALHLPVQSGSDAILKRMHRSYTVEHYLGLIDKLRAACPDISLSTDIIVGFPGE 318
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 302
T+EDF T +L+++ + QV + PR GTPAA+MK P +V+++R L + +
Sbjct: 319 TEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAKMKDDTPRSVIQERFERLVQMVQ 375
>gi|407706837|ref|YP_006830422.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
MC28]
gi|407384522|gb|AFU15023.1| RNA modification enzyme, MiaB family [Bacillus thuringiensis MC28]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 185/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E DG VG+T Y++++ ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGAEELIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
Length = 417
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 156/273 (57%), Gaps = 11/273 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ DG +R+GM NP + +E+A V H +Y FLH P
Sbjct: 184 WDEGDRKLHRLLEEICEI--DGDFRVRVGMANPKGVHGIREELAAVFAEHDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ ++++ VV+T + + ++TD I GFP ET+ D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFPSETERDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + V K+RS+E+++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDLVADAYADMVG-EVR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + + E AD + Y Q++V + +
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|423582518|ref|ZP_17558629.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
gi|401213397|gb|EJR20138.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
Length = 450
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G EG V I E +G VG+T Y++++ ++G VKIT
Sbjct: 367 AKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGLEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
Length = 459
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 34/390 (8%)
Query: 11 AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRKK 65
+K+ + V GC+ Q G + + EL+ + +V G + + ++E L+ GH+V +L
Sbjct: 82 SKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALEEGGHQVEVLDAAS 141
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+LP R +++ LPI +GC C+YC + RG S +E +V +A GV
Sbjct: 142 SFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLEDIVAEAERYVAAGV 201
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+ L ++ +YGRD+ P + A L G LR ++P + + +
Sbjct: 202 KEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHPKDLNDEVVGRFAT 259
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP + ++TDII GFPG
Sbjct: 260 LR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDDVPDIALSTDIIVGFPG 317
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV---- 300
ET +DF T L+ E + QV + R GTPAA M P V+++R L +
Sbjct: 318 ETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQQRFDRLVDLVQQR 377
Query: 301 -FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG-----NML 348
FEA LG +EG +R D L G + V P+ ++
Sbjct: 378 AFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVHAPAPAGVRAEDLA 429
Query: 349 GTSALVKITSVGRWSVFGEVIKILNQVDDK 378
G++ V++ W + GE++ + D +
Sbjct: 430 GSTVRVRVDEAKTWYLAGEIVDGPDAADGR 459
>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|423389373|ref|ZP_17366599.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
gi|423417765|ref|ZP_17394854.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|401106936|gb|EJQ14893.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|401641464|gb|EJS59181.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
Length = 450
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + +++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEDLIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
Length = 414
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 161/297 (54%), Gaps = 11/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S T+E+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAKEIRVTGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 182 WDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADVFADNRKLYDFIHA 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL AM R++ + FR VVDT + ++TD I GFP ET+ DF +++ L
Sbjct: 239 PVQSGSDEVLEAMRRQHRVGKFREVVDTFEGRLDHWTLSTDFIVGFPTETEADFERSMAL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVE 315
+ + + ++++++F RPGT AA MK + + K+RS+ ++ + + M G
Sbjct: 299 LADVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKREICTETHASMVGETH 358
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ E G + + Y QV+V G +G V++T+ FGE I
Sbjct: 359 EVLAVE-PGTGDSIKCRDEAYRQVIVTDAAERGVEVGDLLEVEVTAHEAMYCFGEPI 414
>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
Length = 450
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E++PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
Length = 425
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 12/308 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEET 52
M + I KS K +VVAGC+ + + +K L V I+ G+ D +++ E
Sbjct: 57 MISRIEYFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEK 116
Query: 53 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
+ L L + KV + LPI GCLG+CTYC K ARG+L SY +
Sbjct: 117 YNEYNQNLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDL 175
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V + ++ G K + ++++DT YG D NL L++ I +E+P + +RIGM +
Sbjct: 176 IVKKAEELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHA 232
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
F L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V+D +
Sbjct: 233 KFAEPILDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDEFKSKIKN 292
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ TD+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+
Sbjct: 293 LNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKE 352
Query: 293 RSRELTSV 300
RS L +
Sbjct: 353 RSEILNEL 360
>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
Length = 424
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 158/297 (53%), Gaps = 11/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S +E V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAGAKEIRVTGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL+ I +G +R+GM NP + +E+AEV + +Y FLH+
Sbjct: 182 WDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELAEVFAENEKLYDFLHI 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL AM R++ + +FR VV+T + +ATD I GFP ETD D ++ L
Sbjct: 239 PVQSGSDDVLGAMRRQHQVREFREVVETFDAHLDHWTLATDFIVGFPTETDADHEASMEL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVE 315
++E ++++++F RPGT AA MK + + K+RS +T + Y M G
Sbjct: 299 LRETTPERINVTRFSKRPGTDAADMKGLGGTLKKERSSAMTDLKMDVVENAYRSMVGECH 358
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + E G + + + Y QV++ G G V +TS FGE +
Sbjct: 359 EVLVVEQGT-GDSVKAYDEAYRQVIIREADERGIEPGDVVEVVVTSQNTVYAFGEPV 414
>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
Length = 417
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 156/269 (57%), Gaps = 13/269 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +E+A+V + +Y FLH
Sbjct: 184 WDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADVFAANDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFPTETDHDHEQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K RS+E+++ V EA+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKRELVGEAYAEMVG-ET 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLV 341
R + + + + AD + Y Q++V
Sbjct: 360 REDVLVVEQGTADSVKC--RDAAYRQIIV 386
>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
Length = 417
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 169/303 (55%), Gaps = 19/303 (6%)
Query: 83 LPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
+P+ VGCLG C +C TK RG G S + +V V+ + G +E++L+ +D YG
Sbjct: 119 VPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRGAREIFLTGQDVITYG 178
Query: 140 RDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC-VYSF 194
D+ G LP +L I+ E+ +G +RIGM+ P + + +V++ VY +
Sbjct: 179 FDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFADRLLDVVKSDGRVYRY 236
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQ 253
H+PVQSGSD VL AM R YT ++R +V + ++ IATDII GFPGE +EDF
Sbjct: 237 FHLPVQSGSDRVLKAMGRRYTADEYRELVRKIRRVLGETTFIATDIIVGFPGEGEEDFWA 296
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV-FEAFTPYLGME 311
TV L++E +F +VH+++F PRP T AA + ++VP A K+RS+ L+ + G+
Sbjct: 297 TVKLVEELQFDKVHVARFSPRPFTEAAVIPRQVPDADKKRRSKILSELSLRVAHLRNGLR 356
Query: 312 -GRVERIWITEIAADGIHLVGHTKGYVQVLVP---STGNMLGTSALVKITSVGRWSVFGE 367
G + + I E+ D +VG Y QV+V S ++G V+I G ++GE
Sbjct: 357 VGSGDVVLIDEV--DHGLVVGRAGDYRQVVVKRGNSADGLMGRFVKVRIAGAGPIYLYGE 414
Query: 368 VIK 370
VI+
Sbjct: 415 VIE 417
>gi|410456793|ref|ZP_11310649.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
gi|409927550|gb|EKN64683.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 198/379 (52%), Gaps = 21/379 (5%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ + GV +V G Q ++++ +E+ + ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQYKTERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + ++ + + ++
Sbjct: 127 KNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ NL +LL + A + G LRI I +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDMKDYNLALLLRDLEAGVR--GLERLRISSIEASQITD--- 240
Query: 181 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ EV++H V LH+P+QSGSD+VL M R+YT+ F ++ L E++PG+ + +D+
Sbjct: 241 EVIEVIKHSNIVVRHLHIPIQSGSDSVLKRMRRKYTMEFFGERLERLKEVLPGLAVTSDV 300
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGET+E+F +T N IK++KF ++H+ + R GTPAARM+ +V V +R L
Sbjct: 301 IVGFPGETEEEFMETYNFIKDHKFSELHVFPYSKRTGTPAARMEDQVDEEVKNERVHRLI 360
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSAL 353
S+ + +G V + E + + VG+T Y++V+ P+T +M+G
Sbjct: 361 SLSDQLAKEYASLFDGEVLEVIPEEEYKEEPNSGKYVGYTDNYLKVVFPATEDMVGKIVK 420
Query: 354 VKITSVGRWSVFGEVIKIL 372
VKIT G G+ ++++
Sbjct: 421 VKITKAGYPFNEGQFVRVV 439
>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
Length = 417
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +E V + ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGAKELRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A DG +R+GM NP + +E+AEV + +Y FLH
Sbjct: 184 WDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAEVFAENDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ V++T E + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVSEYLEVIETFDEALEYWTLSTDFIVGFPTETDRDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA MK + + K+RS+E+++ V EA +G E
Sbjct: 301 LRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREIVGEAHASMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
R + + + E AD + Y QV+V + + G +++T+ FGE +
Sbjct: 360 REDCLVVEEGTADSVKC--RDSAYRQVIVQNASDHGIEPGDFVDLEVTAHETMYAFGEPV 417
>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|423585210|ref|ZP_17561297.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|423631033|ref|ZP_17606780.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|423640609|ref|ZP_17616227.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|423650175|ref|ZP_17625745.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|423657266|ref|ZP_17632565.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|401233853|gb|EJR40339.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|401264400|gb|EJR70512.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|401279670|gb|EJR85592.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|401282593|gb|EJR88492.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|401290009|gb|EJR95713.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. A1055]
gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Kruger B]
gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|421638385|ref|ZP_16078981.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
gi|423400843|ref|ZP_17378016.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|423478452|ref|ZP_17455167.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|401653833|gb|EJS71376.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|402428614|gb|EJV60711.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|403394811|gb|EJY92051.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
Length = 450
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
Length = 417
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 157/269 (58%), Gaps = 13/269 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +E+A+V + +Y+FLH
Sbjct: 184 WDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADVFAANDELYNFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFPTETDHDHEQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K RS+E+++ V EA+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAANMKGLGGQVKKDRSKEMSAAKRELVGEAYAEMVG-ET 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLV 341
R + + + + AD + Y Q++V
Sbjct: 360 REDVLVVEQGTADSVKC--RDAAYRQLIV 386
>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
Length = 432
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 190/381 (49%), Gaps = 31/381 (8%)
Query: 7 KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ + V GC Q ++ ++E V++V G +VE VE +V +
Sbjct: 65 KKKNPNSVIAVVGCYSQVAPEEILDIEEVNLVMGTNDRRHIVEKVEAVTCNDKVSTVD-- 122
Query: 65 KLPALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
D+ KV+ + +EI + I GC CTYC +ARG + S ++++V
Sbjct: 123 -----DIMKVKEFEEIEITQTNGRTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDLDNIV 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP- 173
V+ + + G KEV L+ +YG+DI LL+ I A DG +R P
Sbjct: 178 EEVKLLASKGYKEVVLTGIHVASYGKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVEPIL 237
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F E ++EI+++ + V H+ +QSG DA L MNR YT +++ +VD L E +P +
Sbjct: 238 FTDEFVEEISKMNK---VCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDV 294
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGET+E+F QT +K+ + Q+HI ++ PR GTPAA+M ++ V
Sbjct: 295 AITTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHM 354
Query: 293 RSRELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
RS +L S+ F+ F GR + E G + G T Y++V PS ++
Sbjct: 355 RSEQLISLSKNNFDKFAERFI--GREMDVLFEETTKSG-NYEGLTMNYMRVEAPSEEDIS 411
Query: 349 GTSALVKITSVGRWSVFGEVI 369
G VKIT + V G +I
Sbjct: 412 GQIRKVKITGIKEDYVEGVLI 432
>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
Length = 433
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------HEVRLLHR-K 64
+ V GC Q S ++ ++EGV +V G +Q D++V++VE+ + ++V +H +
Sbjct: 73 IAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVNDVMHMHEFE 132
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+P P R L I GC C+YC + RG + S +ES+ V ++ +
Sbjct: 133 DIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKTAVDQLVEEN 188
Query: 125 VKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
E+ + GAYGRD G N+ L +A+ L + LR+G I L E+
Sbjct: 189 FHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIEISPRLLELV 247
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ H LH+P+Q+GSD +L AMNR YT +F +++ + VP + I+TDII GF
Sbjct: 248 KT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFARLIENIRREVPDIAISTDIIVGF 305
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL------ 297
PGETDE F +++ K F ++H+ + R GTPAA+M VKK+ L
Sbjct: 306 PGETDELFQKSLEFAKSMGFMKMHVFPYSKRAGTPAAKMTNQIDEAVKKQRVHLMQKMAE 365
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALVKI 356
S E + +LG E V + E DG ++ G T Y++V + + G + G LVK+
Sbjct: 366 QSAVEFYQRFLGRELEV----LFEQEQDG-YMEGLTSNYIRVYIKNDGEITSGDIRLVKL 420
Query: 357 TSVGRWSVFGEVI 369
+ + + GE+I
Sbjct: 421 VKLFKDGILGELI 433
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 193/365 (52%), Gaps = 19/365 (5%)
Query: 17 VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLLHR--KKLPALD 70
V GC+ Q G ++ + IV G I + ++EE G++ + +L + LD
Sbjct: 77 VCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAIEILEEIDENENLLD 136
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
P VR NK+ + + GC CTYC RG S + ++ V+ ++ DGVKE+
Sbjct: 137 QFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILREVQYLVEDGVKEIH 196
Query: 130 LSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH-LKEIAEVLR 187
L ++ AYG+D G V LL A VAE+ DG +R +P + E +K +A++
Sbjct: 197 LIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRDLDEDTIKVMADL-- 251
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + LH+P+Q+GSD +L AM+R YT ++ ++ L + +P + ++TDII GFPGET
Sbjct: 252 -PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIALSTDIIVGFPGET 310
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKRSRELTSVFE--AF 304
ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + KR +L ++ + F
Sbjct: 311 YEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSKRLNDLINLQKDITF 370
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
L + ++ I + EI + LVG T+ V + LG VKI V R+S+
Sbjct: 371 KKNLEYQDKIVEILVEEINQEN-KLVGRTRTNKLVYAEGSPEYLGKLVNVKIEKVNRFSL 429
Query: 365 FGEVI 369
G +I
Sbjct: 430 EGSII 434
>gi|302335738|ref|YP_003800945.1| MiaB family RNA modification protein [Olsenella uli DSM 7084]
gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
Length = 455
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 181/377 (48%), Gaps = 24/377 (6%)
Query: 10 SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRV----VEVVEETLKGHEVRLLH 62
S ++ + V GC+ Q G R + + V +V G + V VE +EE V
Sbjct: 80 SGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLVEALEEGGGRVHVDTSE 139
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ + +LP R F +PI GC CTYC H RG S E +V ++A
Sbjct: 140 EGRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIVPHVRGRERSRAFERVVDECARLVA 199
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
DGV+E+ L ++ +YGRD+ P + A + G +R +NP + + I
Sbjct: 200 DGVREITLLGQNVNSYGRDL-YGEPRFAELLQA-VGETGVERIRFTSSNPKDL--SAETI 255
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + P V LH+ VQSGS +L AMNR YT + V+ + +PG+ ++TDII G
Sbjct: 256 AAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIRDIKAAIPGIALSTDIIVG 315
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV- 300
FPGET+EDF T++L++E F + + RPGTPAAR+ P V++ R L S+
Sbjct: 316 FPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITDDTPREVIQGRFDRLASLV 375
Query: 301 ----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV-----PSTGNMLGTS 351
EA PY G RVE + D LVGH+ VL+ G+ +GT
Sbjct: 376 ERLAHEANVPYQG--SRVEALIEGASKKDDRVLVGHSPHNQTVLLDLPEGSHAGDFVGTL 433
Query: 352 ALVKITSVGRWSVFGEV 368
V +T W + GE+
Sbjct: 434 CDVHVTEARTWYLRGEL 450
>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
Hakam]
gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|376268207|ref|YP_005120919.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|364514007|gb|AEW57406.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
Length = 450
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 186/361 (51%), Gaps = 21/361 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 G 360
G
Sbjct: 427 G 427
>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cytotoxicus NVH 391-98]
gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
391-98]
Length = 450
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q +++++ +E+ + + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLDYIEQYRQERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAGLLRDMEAEVK--GLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ ++ L E +PG+ I +D+I GFPG
Sbjct: 247 DKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V +R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNERVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++V+ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G G+ +++L
Sbjct: 427 GYPYNEGQFVRVL 439
>gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
Length = 445
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 198/380 (52%), Gaps = 31/380 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +E+ + + ++ +
Sbjct: 76 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRRKMLEYIEQFKEERQPINGVGNIMKNRVYE 135
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L +P ++ L I GC CT+C ARG + S E ++ + + ++ G KE
Sbjct: 136 ELQVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSREPEEVIRQAQQLVDAGYKE 194
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL +LL + E DG +RI + + + E+ +
Sbjct: 195 IVLTGIHTGGYGEDMKDYNLAMLLRDL--EEKVDGLKRIRISSIEASQLTDEVIEVIDNS 252
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I G
Sbjct: 253 KLVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLEKLKKALPGLAVTSDVIVG 306
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR-------S 294
FPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ + +R S
Sbjct: 307 FPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQIDEEIKNERVHRLIELS 366
Query: 295 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
+L + + Y +E E ++ E G++ VG+T Y++V+ P+T +M+G V
Sbjct: 367 NQLAKEYASQFEYEVLEVIPEEVY-KEQPDSGLY-VGYTDNYLKVVFPATEDMVGKLVKV 424
Query: 355 KITSVGRWSVFGEVIKILNQ 374
K+T G G+ +++L +
Sbjct: 425 KLTKAGYPFNEGQFVRVLEE 444
>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
Length = 450
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKS 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
superfamily, TRAM family [uncultured archaeon]
Length = 430
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 6/275 (2%)
Query: 55 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
G +V ++ + + A + ++ + + ++ I GC+G CTYC K ARG L SY E +
Sbjct: 98 GDDVAMVTPRDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKIC 157
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
V++ + G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP
Sbjct: 158 EAVKSAVESGANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPF 214
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
++ L E+ E ++ F HVPVQSGSD VL M R Y ++DF +V +
Sbjct: 215 TLMPILDELLEAFNTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNIRARFRQS 274
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 293
I+TD I GFP ET+EDF ++ L++E K +V+I++F PRP T A+++ + K+R
Sbjct: 275 TISTDFIIGFPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLLEREKKRR 334
Query: 294 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADG 326
SR ++ + F +EG + +TE G
Sbjct: 335 SRIFSTGYHNIVFAKNKELEGAELPVLVTEPGKKG 369
>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 445
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/372 (33%), Positives = 186/372 (50%), Gaps = 26/372 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL---------HR 63
+VV GC Q S ++ + GV +VG + R+V++VEE E L
Sbjct: 83 VVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAVVRDVFADQDY 142
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++LP LP ++ L I GC C YC +ARG L S E+++ R ++A
Sbjct: 143 EELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENVLAEARRLVAG 198
Query: 124 GVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G KE+ L+ TGAYG+D G +L L+ + AE+P G LR+ P I L +
Sbjct: 199 GFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVEPMDITGKLVD 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
I P V LH+P+QSG D VL+ M R YT + FR +V + VPG+ I TDII
Sbjct: 256 IMAT--RPNVCRHLHIPLQSGDDTVLARMRRHYTTAWFRELVQRVRGCVPGIAITTDIIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSV 300
GFPGETD F T N ++E F ++H+ ++ PR GT AA SA VK+ RSR + ++
Sbjct: 314 GFPGETDGQFENTFNFVREMAFARLHVFKYSPRQGTEAASFPDQISAPVKEARSRRMIAL 373
Query: 301 FEAFTPYLGME--GRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ + GR ++ + E+ G T Y++V+ P+ N +G V++
Sbjct: 374 GDELARSFAAKHIGREVQVLVEEELPEKAGFFAGLTDNYLRVIFPARKNPVGELVTVRVE 433
Query: 358 SVGRWSVFGEVI 369
+ + G +I
Sbjct: 434 EIEGADLKGMII 445
>gi|452856306|ref|YP_007497989.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452080566|emb|CCP22329.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 451
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG+ VG+T Y++V+ T +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTEDLIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V+D++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
Length = 459
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 189/390 (48%), Gaps = 34/390 (8%)
Query: 11 AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRKK 65
+K+ + V GC+ Q G + + EL+ + +V G + + ++E L+ H+V +L
Sbjct: 82 SKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALEEGSHQVEVLDAAS 141
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
+LP R +++ LPI +GC C+YC + RG S +E +V +A GV
Sbjct: 142 SFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLEDIVAEAERYVAAGV 201
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
KE+ L ++ +YGRD+ P + A L G LR ++P + + +
Sbjct: 202 KEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHPKDLNDEVVGRFAT 259
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP + ++TDII GFPG
Sbjct: 260 LR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPDIALSTDIIVGFPG 317
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV---- 300
ET +DF T L+ E + QV + R GTPAA M P V+++R L +
Sbjct: 318 ETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQQRFDRLVDLVQQR 377
Query: 301 -FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG-----NML 348
FEA LG +EG +R D L G + V P+ ++
Sbjct: 378 AFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVHAPAPAGVRAEDLA 429
Query: 349 GTSALVKITSVGRWSVFGEVIKILNQVDDK 378
G++ V++ W + GE++ + D +
Sbjct: 430 GSTVRVRVDEAKTWYLAGEIVDGPDAADGR 459
>gi|423549948|ref|ZP_17526275.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
gi|401189564|gb|EJQ96614.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
Length = 450
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 190/373 (50%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + E+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKNYNLAGLLRDMETEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
Length = 425
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 173/324 (53%), Gaps = 21/324 (6%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETL------ 53
M + I KS K +VVAGC+ + + +K L V +V ++ +++++ L
Sbjct: 57 MISRIEYFKSLDKKVVVAGCMAKALPKKIKTLADV-LVMPREAQYSGKILKDNLLKGCSE 115
Query: 54 -KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
G L+ + + KV + LPI GCLG+CTYC K ARG+L SY +
Sbjct: 116 KNGKSNENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDL 175
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+V + ++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM +
Sbjct: 176 IVKKAEELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHA 232
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
F L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ +
Sbjct: 233 KFAEPILDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKN 292
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ TD+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+
Sbjct: 293 LNFTTDVIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKE 352
Query: 293 RS-------RELTSVFEAFTPYLG 309
RS REL+ +E T ++G
Sbjct: 353 RSEILNELRRELS--YENNTRHIG 374
>gi|423457441|ref|ZP_17434238.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
gi|401147825|gb|EJQ55318.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
Length = 450
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ +VL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIKVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus cereus biovar anthracis
str. CI]
gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 450
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 190/373 (50%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + E+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMETEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|375363075|ref|YP_005131114.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384266153|ref|YP_005421860.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387899175|ref|YP_006329471.1| hypothetical protein MUS_2838 [Bacillus amyloliquefaciens Y2]
gi|451346251|ref|YP_007444882.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
gi|371569069|emb|CCF05919.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380499506|emb|CCG50544.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387173285|gb|AFJ62746.1| conserved hypothetical protein YqeV [Bacillus amyloliquefaciens Y2]
gi|449850009|gb|AGF27001.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
Length = 451
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG+ VG+T Y++V+ T +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEEAFKESDEDGM-FVGYTDNYMKVVFKGTEDVIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V+D++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
Length = 454
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 197/385 (51%), Gaps = 24/385 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE + + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
E V I E +G VG+T Y++++ + +++G VKIT
Sbjct: 367 AKEYASQFEDEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEDLIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRR 384
G + +++L +D + N++
Sbjct: 427 GYPYNEAQFVRVL---EDDVKKNQQ 448
>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
Length = 417
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 166/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L A + EL +G +R+GM NP + +E+A+V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFAEYDELYGFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T E + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYVEVVETFDEALDYWTLSTDFIVGFPTETDHDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + + K+RS+E++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIVADAYADMVG-ERR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + E AD + Y Q++V + G G V +T+ FGE +
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDVDVTAHETMYAFGEPV 417
>gi|385265541|ref|ZP_10043628.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
gi|385150037|gb|EIF13974.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
Length = 451
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG+ VG+T Y++V+ T +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTEDVIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V+D++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|392393735|ref|YP_006430337.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390524813|gb|AFM00544.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 446
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 183/370 (49%), Gaps = 21/370 (5%)
Query: 15 LVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
+ ++GC+ Q L+ L + + R++E EE KG + + K
Sbjct: 82 IAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEESEE--KGKVAEVWEKPKE 139
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+P + K + I+ GC CTYC H RG S E +V + ++ G +
Sbjct: 140 TQESVPLAEKGKLKAFVNISYGCDNFCTYCIVPHVRGRERSRKPEDIVEEISALVKTGCR 199
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EV L ++ +YG+D+ + LL A+ A DG +R ++P + + L E
Sbjct: 200 EVTLLGQNVNSYGQDLDRAYDFADLLKAVDA---IDGLWRVRFMTSHPKDLSDKLIETIA 256
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
H C + +H+P Q+GS+ +L +MNR+YT + + + + ++P + TDII GFP
Sbjct: 257 QGTHLCEH--IHLPFQAGSNEILKSMNRKYTREYYLSRIAKIKAIIPQASLTTDIIVGFP 314
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+EDF QT++L++E ++ Q + R GTPAA+M +++P + K+R + L +V A
Sbjct: 315 GETEEDFEQTLDLVREVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQHLINVQNA 374
Query: 304 --FTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
T M G+ + + + ++ L G T+G V+ P ++GT V I
Sbjct: 375 QSLTWRQEMIGKTYEVLVEGPSKSNPDRLTGRTRGNELVVFPGEAKLMGTLVQVLIQDAN 434
Query: 361 RWSVFGEVIK 370
W++FGE ++
Sbjct: 435 SWTLFGECVE 444
>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
Length = 450
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 170/314 (54%), Gaps = 18/314 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+AEV + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEVFAANEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP ET+ D +++++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTETEADHDRSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + + K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + + +G V++T FG+ +
Sbjct: 359 TFEVLVVEEGTGDSVKC--RDSAYRQIIVQNAADRGVEVGDFLTVEVTGHNTVYAFGDPV 416
Query: 370 KILNQVDDKIASNR 383
++ D A+ R
Sbjct: 417 AT-DEATDPDAAER 429
>gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
Length = 451
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG+ VG+T Y++V+ T +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTEDLIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V++++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|365174628|ref|ZP_09362068.1| MiaB/RimO family radical SAM methylthiotransferase [Synergistes sp.
3_1_syn1]
gi|363614425|gb|EHL65919.1| MiaB/RimO family radical SAM methylthiotransferase [Synergistes sp.
3_1_syn1]
Length = 452
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 185/384 (48%), Gaps = 37/384 (9%)
Query: 9 KSAKKPLV-VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K P V + GC+ Q G K+ V +V G + + V + V E G + R
Sbjct: 83 KRKKSPAVALVGCMAQRIGREMAKKFSCVRLVSGPRHLGLVPQAVTEISSGTQPRFFMDD 142
Query: 65 KLPAL-DL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
AL DL P R N F + I GC C+YC + RG L S + ++ RT+
Sbjct: 143 DPRALLDLEVAPTARTNPFKAYVTITYGCDRFCSYCIVPYVRGRLQSRAADDILKETRTL 202
Query: 121 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
I GVKE+ L ++ AYG+D+ G LL A P G T LR ++P +
Sbjct: 203 IDGGVKEITLLGQNVDAYGKDLNDGYGFASLLRD-AANQP--GLTRLRFATSHPK---DF 256
Query: 179 LKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+I EV+R P + +++PVQSGSD +L MNR YT + +VD + +P + + T
Sbjct: 257 DGDILEVMRERPDICRAINLPVQSGSDRILREMNRGYTSGQYLALVDKIRGALPDVSLTT 316
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
D+I GFPGETDEDF + +L++E KF VH + + PR GT AA M ++ + V R E
Sbjct: 317 DLIVGFPGETDEDFRASYDLLREVKFDIVHTAAYSPREGTRAAMMDGQIDNRVKAARLNE 376
Query: 297 LTSVFE-----AFTPYLGMEGRVERIWITEIAADGI------HLVGHTKGYVQVLVPSTG 345
+ ++ A Y+G E EI ADG+ + G T V++P
Sbjct: 377 INALQSQIARTANEEYVGAE--------FEILADGLAPRGEGKIQGRTMTDKVVIIPGCE 428
Query: 346 NMLGTSALVKITSVGRWSVFGEVI 369
G V+IT WS+ GE I
Sbjct: 429 EDFGKIIPVRITRASHWSLEGERI 452
>gi|218905447|ref|YP_002453281.1| MiaB family RNA modification protein [Bacillus cereus AH820]
gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
Length = 450
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 190/373 (50%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRXERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKIT
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
Length = 434
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 187/378 (49%), Gaps = 29/378 (7%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV 74
LVV GC+ D GV +I EV L G E + P LD
Sbjct: 71 LVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAEPVLD---- 121
Query: 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 134
V ILPI GC+ C+YC TK A G + S TVE V + R ++ G KE+ ++ +D
Sbjct: 122 ---GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAKEIRVTGQD 178
Query: 135 TGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVY 192
TG YG D G LP LL+ I DG +R+GM NP I +E+AEV + +Y
Sbjct: 179 TGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELAEVFADNEELY 235
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP ET+ D
Sbjct: 236 DFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTETEADHE 295
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPY 307
++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++ V +A+
Sbjct: 296 RSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKMEVVGDAYESM 355
Query: 308 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSV 364
+G E + + E D + Y Q++V + G +G V++T
Sbjct: 356 VGE--TFEVLVVEEGTGDSVKC--RDGAYRQIIVQNAAERGVAVGDFLEVEVTGHNTVYA 411
Query: 365 FGEVIKILNQVDDKIASN 382
FGE VD+ A +
Sbjct: 412 FGEPTDGGRPVDEDPAES 429
>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817086|ref|YP_002817095.1| MiaB family RNA modification protein [Bacillus anthracis str. CDC
684]
gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Vollum]
gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Australia 94]
gi|386738199|ref|YP_006211380.1| MiaB family RNA modification protein [Bacillus anthracis str.
H9401]
gi|421506565|ref|ZP_15953488.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
684]
gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|384388051|gb|AFH85712.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
H9401]
gi|401823558|gb|EJT22705.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
Length = 450
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 190/373 (50%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-P 67
+ V GC Q S ++ + GV IV G Q ++++ +EE K + VR + + ++
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG DI NL LL + AE+ G LRI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPG
Sbjct: 247 DKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R L +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G VG+T Y++++ + ++G VKI
Sbjct: 367 AKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKIMKA 426
Query: 360 GRWSVFGEVIKIL 372
G + +++L
Sbjct: 427 GYPYNEAQFVRVL 439
>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
Length = 417
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L A + EL +G +R+GM NP + +E+A+V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFAEYDELYGFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T E + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYVEVVETFDEALEYWTLSTDFIVGFPTETDHDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + + K+RS+E++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIVADAYADMVG-ERR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + E AD + Y Q++V + G G + +T+ FGE +
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDLDVTAYETMYAFGEPV 417
>gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13]
Length = 454
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 198/397 (49%), Gaps = 27/397 (6%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ + GV +V G Q ++++ +E+ + + ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQFKQERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + +V + + ++
Sbjct: 127 KARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVVTQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ N +LL + ++ +G +RI I + +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRELDEKV--EGLKRIRISSIEASQITDEVI 243
Query: 181 EI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E+ +++RH LH+P+QS S+ VL M R+YT+ F +D L E +PG+ I
Sbjct: 244 EVLNNSDKIVRH------LHIPIQSASNTVLKRMRRKYTMEFFAERLDRLKEALPGLAIT 297
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM +V + +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQVDEEMKNERVH 357
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEI---AADGIHLVGHTKGYVQVLVPSTGNMLGT 350
L ++ + E V + EI A D VG+T Y++V+ P+T M+G
Sbjct: 358 RLIALSDQLAKEYASTFEEEVLEVIPEEIYKEAPDQGLYVGYTDNYLKVVFPATEEMVGK 417
Query: 351 SALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
VKI G G+ +++L N R+SS
Sbjct: 418 LVKVKIAKAGYPYNEGQFVRVLEDAPRLEEENIRLSS 454
>gi|335436407|ref|ZP_08559202.1| MiaB-like tRNA modifying enzyme [Halorhabdus tiamatea SARL4B]
gi|334897719|gb|EGM35848.1| MiaB-like tRNA modifying enzyme [Halorhabdus tiamatea SARL4B]
Length = 424
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 21/303 (6%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GCL C+YC TK A G + S V V + R ++ G +E+ ++ +DTG YG +
Sbjct: 127 ILPIARGCLSDCSYCITKQATGTIDSPPVAGNVEKARELLDAGAREIRITGQDTGVYGLE 186
Query: 142 IGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPV 199
G LP LL I EL G +R+GM NP + +E+A+V H +Y+FLH PV
Sbjct: 187 NGERKLPELLTRIC-ELA--GDFRVRVGMANPKGVYGMHEELADVFAAHDELYNFLHAPV 243
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL+ M R + +F+ +V + + +ATD I GFP ET+ DF Q+++L++
Sbjct: 244 QSGSDDVLTDMRRRHRTPEFKEIVAAFDDRLDYWTLATDFIVGFPTETEADFQQSMDLLR 303
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI 319
+ + ++++++F RPGT AA + + + K+RS +T + + + GR +
Sbjct: 304 DVEPEKINVTRFSKRPGTDAAELDGLGGTIKKERSSAMTDL------KMDVVGRAHDAMV 357
Query: 320 TE-----IAADGIH--LVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
E + DG LVG+ + + QV +P +M LG V+IT GE I
Sbjct: 358 GEEHTVLLTQDGTEDSLVGYDEAHRQVAIPEAESMGLELGDFVDVEITGHNTVYALGEPI 417
Query: 370 KIL 372
+ +
Sbjct: 418 RTV 420
>gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfitobacterium hafniense DCB-2]
gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DCB-2]
Length = 447
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 184/371 (49%), Gaps = 29/371 (7%)
Query: 15 LVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
+ ++GC+ Q L+ L + + R++E EE K EV R+
Sbjct: 82 IAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVWEKPRETQ 141
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
++ L + K + I+ GC CTYC H RG S E ++ +R ++ G +
Sbjct: 142 ESVLLAA--KGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEIRALVETGCR 199
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EV L ++ +YG+D+ + LL + + DG +R ++P + + L E
Sbjct: 200 EVTLLGQNVNSYGQDLDRAYDFADLLKDVDS---IDGLWRVRFMTSHPKDLSDKLIETIA 256
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
H C + +H+P Q+GSD +L MNR+YT + + + + ++P + + TDII GFP
Sbjct: 257 AGTHLCEH--IHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKAIIPQVSLTTDIIVGFP 314
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+EDF QT+ LI++ K+ Q + R GTPAA+M +++P + K+R ++L +V A
Sbjct: 315 GETEEDFEQTLALIRQVKYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQLITVQNA 374
Query: 304 FTPYLGMEGRVERIWIT-EIAADG------IHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ + R E I T E+ +G L G T+GY V+ P ++GT V I
Sbjct: 375 QS----LAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVVFPGEAQLIGTLVQVLI 430
Query: 357 TSVGRWSVFGE 367
W++FGE
Sbjct: 431 QDANSWTLFGE 441
>gi|373859092|ref|ZP_09601824.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
gi|372451183|gb|EHP24662.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
Length = 451
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 196/383 (51%), Gaps = 27/383 (7%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLH 62
K+ + V GC Q S ++ + GV +V G Q ++++ +E+ + + VR +
Sbjct: 67 KNPDAVICVTGCYAQTSPAEILAIPGVDVVVGTQDRVKMLDFIEQYKQERQPINGVRNIM 126
Query: 63 RKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ ++ LD+P ++ L I GC CT+C ARG + S + +V + + ++
Sbjct: 127 KSRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVRQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----L 176
G KE+ L+ TG YG D+ NL +LL + E+ G LRI I +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDMKDYNLAMLLQDLEKEVK--GLKRLRISSIEASQITDEVI 243
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E +K ++RH LH+P+QSGS++VL M R+YT+ F +D L E++PG+ I
Sbjct: 244 EAIKNSNIIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFAERLDRLKEVLPGLAIT 297
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
+D+I GFPGET+E+F +T N I+E++F ++H+ + R GTPAARM+ +V V R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIEEHQFSELHVFPYSKRTGTPAARMEDQVDEEVKNDRVH 357
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGT 350
L S+ + EG V + E + G+ Y++V+ T M+G
Sbjct: 358 RLISLSDQLAKEYASQFEGEVLEVIPEEKHHENDESPLYTGYADNYLKVVFAGTEAMIGK 417
Query: 351 SALVKITSVGRWSVFGEVIKILN 373
VKIT VG G+ I++LN
Sbjct: 418 IVKVKITKVGYPYNEGQFIRVLN 440
>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
Length = 417
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + + E+ +G +R+GM NP + +E+AEV + +Y FLH P
Sbjct: 184 WDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVFAENEELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPTETDRDHAQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + V K+RS+E++ V EA+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEAKREIVREAYADMVG-EVR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + + AD + Y QV+V + G G +++T+ FGE +
Sbjct: 361 EDCLVVEQGTADSVKC--RDSAYRQVIVQNASEYGLEPGDFVDLEVTAHETMYAFGEPV 417
>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
Length = 428
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 181/362 (50%), Gaps = 36/362 (9%)
Query: 15 LVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPK 73
+ V GC+P L+E V ++ I R V KG
Sbjct: 96 VYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP----------------- 138
Query: 74 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 133
V ++ I GC+G+C YC T+ ARG + S + + + + + G E+ L+ +
Sbjct: 139 ------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAVEIRLAGQ 192
Query: 134 DTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192
D AYG D G +L LL I A PD T +R+GM NP + + +A + + +
Sbjct: 193 DLSAYGHDTGQWSLATLLEGIPAL--PD-ITRIRLGMMNPATLKPIAQRVARTMNNGPFF 249
Query: 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 252
SFLH+P+QSGSD VL M R YT++D + ++D + + IATDII GFPGETD+D
Sbjct: 250 SFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEMSDITIATDIITGFPGETDDDHE 309
Query: 253 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL---- 308
+TV LI+ V+++++ RPGT +R ++P + K+RSR + + E++T +
Sbjct: 310 ETVRLIRRIAPGMVNVTRYSWRPGTGMSRDHELPDRIRKERSRAI--IRESYTMFQKANE 367
Query: 309 GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 368
M+G V R+ TE G ++ ++ Y V++ LG +V IT + GEV
Sbjct: 368 KMKGAVMRVIPTEQLKPG-SVMARSERYEGVVIREECQ-LGIPCMVTITGSTPHYLIGEV 425
Query: 369 IK 370
I+
Sbjct: 426 IR 427
>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
Length = 450
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 17/307 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGAKELRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELADVFADNEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP E DED +++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTEDDEDHELSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G V++T FG+ +
Sbjct: 359 TFEVLVVEEGTGDSVKC--RDSAYRQIIVQNATDRGVEVGDFLTVEVTGHNTVYAFGDPV 416
Query: 370 KILNQVD 376
D
Sbjct: 417 ATDEAAD 423
>gi|365157922|ref|ZP_09354166.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
gi|363622332|gb|EHL73498.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
Length = 452
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 196/380 (51%), Gaps = 21/380 (5%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLL 61
K+ + V GC Q S ++ E+ GV IV G Q ++++ VE+ K + ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEVLEIPGVDIVIGTQDRTKILDFVEKYQKERQPINAVKNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +D+P ++ L I GC CT+C ARG + S + ++ + + ++
Sbjct: 127 KNRVFEEMDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ NL +LL I ++ G LRI + + +
Sbjct: 186 DAGYKEIVLTGIHTGGYGTDMKDYNLAMLLRDIEEQV--HGLKRLRISSIEASQLTDEVI 243
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
++ + R V LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I
Sbjct: 244 DVID--RSNIVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLREALPGLAVTSDVI 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R L +
Sbjct: 302 VGFPGETEEEFMETYNFVKEHKFAELHVFPYSKRTGTPAARMENQIDEEVKNERVHRLIT 361
Query: 300 VFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + EG V + E G++ G+T Y++V+ P++ +M+G
Sbjct: 362 LSDQLAKEYASQFEGEVLEVIPEERYKEDPESGLY-EGYTDNYLKVVFPASEDMVGKLVK 420
Query: 354 VKITSVGRWSVFGEVIKILN 373
VKIT G + +++L+
Sbjct: 421 VKITKAGYPYNEAQFVRVLD 440
>gi|452975110|gb|EME74929.1| tRNA methylthiotransferase YqeV [Bacillus sonorensis L12]
Length = 451
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 199/392 (50%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIKQYQEERQPINGVSNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIRQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + + G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAQLLKELDSRVK--GLKRIRISSIEASQITDEVIEVLDKS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS++VL M R+YT+ F + L + +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N I+E+KF ++H+ + R GTPAARM +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYNFIQEHKFSELHVFPYSKRTGTPAARMDDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I TE D ++ VG+T Y++V+ + M+G VK
Sbjct: 364 DQLAKEYASDYEGDVLEIIPEEQFTETGEDNLY-VGYTDNYMKVVFEGSEEMIGQLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
IT G G+ ++I DD + + R+SS
Sbjct: 423 ITEAGYPYNKGQFVRI---ADDSVPESMRLSS 451
>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
Length = 417
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 166/300 (55%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +++A+V + +Y FLH
Sbjct: 184 WDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADVFAENDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVEEYLEVVETFDDALEYWTLSTDFIVGFPTETDHDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF-----EAFTPYLGMEG 312
++E + ++++++F RPGT AA +K + + K+RS+E++ V EA+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREIVGEAYADMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
R + + + + AD + Y Q++V + G G ++IT+ FGE +
Sbjct: 360 REDCLVVEDGTADSVKC--RDSAYRQIIVQNADDYGIAPGDFVDLEITAHETMYAFGEPV 417
>gi|392407827|ref|YP_006444435.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
gi|390620963|gb|AFM22110.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
Length = 450
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 185/370 (50%), Gaps = 23/370 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L V GC+ Q G L++ V ++VG + I R+ +V+E L V L +DL
Sbjct: 76 LAVVGCMAQNMGLDLLRKFPQVKAVVGPRHIGRLPDVLEGVLNHKAVAYLDEDPREMVDL 135
Query: 72 ---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
P VR N F + I GC CTYC + RG S ++ V ++ GV EV
Sbjct: 136 EVAPLVRSNPFKAFVTIAHGCDNFCTYCIVPYVRGRFVSRHPSEILKEVNELVESGVIEV 195
Query: 129 WLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L ++ +YG+D G LL V+ +P G +R ++P + + E+ +
Sbjct: 196 TLLGQNVDSYGKDFDNGYRFSNLLRD-VSRIP--GLLRVRFTTSHPKDFTDDVIEV--MA 250
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P + +++P+QSGS+ +L MNR YT+ + +V+ + E VP + I +D+I GFPGE
Sbjct: 251 SEPKICPAINLPIQSGSNRILKKMNRGYTVEHYEEIVNHIREAVPEVAITSDLIVGFPGE 310
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE--- 302
++DF T+ ++K +F VH + + PR GTPAA M +VP +++ R L V E
Sbjct: 311 AEDDFKDTLEMLKRMQFDLVHTAAYSPRNGTPAAVMPDQVPE---EEKKRRLAIVNELQD 367
Query: 303 --AFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ L + G V + I A G ++ G T VL+P +MLG V +T+
Sbjct: 368 GISLQKNLSLIGNVVEVLIDGYAPKGKSMLQGRTPTDKVVLIPGDEDMLGKLCQVHVTNA 427
Query: 360 GRWSVFGEVI 369
W ++GE+I
Sbjct: 428 SHWYLYGEII 437
>gi|448238779|ref|YP_007402837.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
gi|445207621|gb|AGE23086.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
Length = 449
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 196/387 (50%), Gaps = 28/387 (7%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q +++E +E+ + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILEYIEQFQRERQPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + R ++A G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQARQLVAAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH----LKEIAE 184
L+ TG YG D+ N LL + ++P G LRI I + LK +
Sbjct: 194 LTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQITDEVIDVLKRSEK 251
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P + + +D+I GFP
Sbjct: 252 IVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPELAVTSDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+++F +T N I+E +F ++H+ + R GTPAARM ++ R R L ++ +
Sbjct: 306 GETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKHDRVRRLIALSDQ 365
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E + L VG+T Y++V P+T M+G VKIT G
Sbjct: 366 LAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMVGELVKVKITKAG 425
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D++A + + SS
Sbjct: 426 YPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
Length = 417
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 156/269 (57%), Gaps = 13/269 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +E+A+V + +Y+FLH
Sbjct: 184 WDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADVFAANDELYNFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP ET+ D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFPTETEHDHEQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + +V++++F RPGT AA MK + V K RS+E+++ V EA+ +G E
Sbjct: 301 LRETRPEKVNVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKRDIVGEAYGDMVG-EI 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLV 341
R + + E AD + Y Q++V
Sbjct: 360 REGVLVVEEGTADSVKC--RDAAYRQIIV 386
>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
DSM 16532]
gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
DSM 16532]
Length = 432
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 32/305 (10%)
Query: 13 KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 70
K L+VAGC+ + LK S+V Q + EV++ R K+ +D
Sbjct: 72 KKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT-----------RGKIVLID 120
Query: 71 LPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ R + + +PI GCL C++C TKHAR L S++++++V V + +G
Sbjct: 121 GLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVKAVERAVRNG 180
Query: 125 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
E+ L+ D G YG D+ LP L+ + + G M+RIGM NP EHL+ I
Sbjct: 181 AVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMVRIGMINP----EHLRHI 234
Query: 183 AEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+ + +PG+ IAT
Sbjct: 235 LDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEVKSRIPGVSIAT 294
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII G P E +EDF++T+ +I+E +F +VH++ + RP T +A + +VP+ V K+R
Sbjct: 295 DIIVGHPMEDEEDFSETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTRVKKERVLRA 354
Query: 298 TSVFE 302
V E
Sbjct: 355 LQVIE 359
>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
15897]
gi|224525356|gb|EEF94461.1| tRNA methylthiotransferase YqeV [Catenibacterium mitsuokai DSM
15897]
Length = 435
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 183/363 (50%), Gaps = 14/363 (3%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALD 70
+ V GC Q S ++ +EGVS+V G Q +V+ VEE H+ V++ + K+ +
Sbjct: 73 ICVVGCYSQVASEEITGIEGVSVVLGTQHRASIVDFVEEYKSTHKQIVKIENVMKVSRFE 132
Query: 71 LPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ NK L I GC CTYC +ARG + S E ++ + + ++ G E+
Sbjct: 133 DLSIHAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVRSRPKEDVLRQAQELVDRGFVEI 192
Query: 129 WLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L+ T YG D+ + LL + ++ G LRI + + + E+ + +
Sbjct: 193 VLTGIHTAGYGVDLENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQVSDEIIEL--IGK 248
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + LH+P+QSG+D++L M R Y ++F L E +PG+ I TD+I GFPGET
Sbjct: 249 SPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALPGISITTDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF-T 305
+EDF T N IK+ F Q+H+ + R GTPA RM +VP V K+R R L + + T
Sbjct: 309 EEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVKKERVRRLLKLSDELKT 368
Query: 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
+ E E + E DG ++VGH Y++VLV T G VK+T + +
Sbjct: 369 EFALSEMNKELEVLIEEEKDG-YMVGHASNYLKVLVADTSLKEGHIYKVKVTDHRGYDLI 427
Query: 366 GEV 368
G V
Sbjct: 428 GVV 430
>gi|154686803|ref|YP_001421964.1| hypothetical protein RBAM_023730 [Bacillus amyloliquefaciens FZB42]
gi|394992058|ref|ZP_10384851.1| YqeV [Bacillus sp. 916]
gi|429505951|ref|YP_007187135.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42]
gi|393807074|gb|EJD68400.1| YqeV [Bacillus sp. 916]
gi|429487541|gb|AFZ91465.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 451
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E +G+ VG+T Y++V+ T +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEEAFKESDEEGM-FVGYTDNYMKVVFKGTEDVIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V+D++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
Length = 417
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKELRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L A + EL +G +R+GM NP + +E+A+ + +Y FLH P
Sbjct: 184 WDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADAFAEYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T E + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYVEVVETFGEALEYWTLSTDFIVGFPTETDHDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + + K+RS+E+++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIVADAYADMVG-ERR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + E AD + Y Q++V + G G V +T+ FGE +
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDVDVTAHETMYAFGEPV 417
>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
Length = 417
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 156/273 (57%), Gaps = 11/273 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ DG +R+GM NP + +E+A V + +Y FLH P
Sbjct: 184 WDEGNRKLHRLLEEICEI--DGDFRVRVGMANPKGVHGIREELAAVFAEYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ ++++ VV+T + + ++TD I GFP ET+ D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFPTETERDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA +K + V K+RS+E+++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAELKGLGGTVKKERSKEMSAVKRDLVADAYADMVG-EVR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + + E AD + Y Q++V + +
Sbjct: 361 EDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 451
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 199/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI +
Sbjct: 367 AKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILNA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|384160190|ref|YP_005542263.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384165120|ref|YP_005546499.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|384169260|ref|YP_005550638.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|341828539|gb|AEK89790.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
Length = 451
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 200/392 (51%), Gaps = 32/392 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG+ VG+T Y++V+ + +++G VK
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGSEDLIGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
I G G+ +++ V++++ N R+SS
Sbjct: 423 IQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
Length = 417
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 16/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A +G +R+GM NP + +++A+V + +Y FLH
Sbjct: 184 WDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADVFAENDELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + ++ VV+ E + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSDDVLGDMRRQHQVEEYLEVVEAFDERLDYWTLSTDFIVGFPTETDHDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF-----EAFTPYLGMEG 312
++E + ++++++F RPGT AA +K + + K+RS+E++ V EA+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREIVGEAYADMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
R + + + + AD + Y Q++V + G G ++IT+ FGE +
Sbjct: 360 REDCLVVEDGTADSVKC--RDSAYRQIIVQNADDYGIAPGDFVDLEITAHETMYAFGEPV 417
>gi|421730939|ref|ZP_16170065.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407075093|gb|EKE48080.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 451
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQITDEVIEVLDAS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V +R +L ++
Sbjct: 304 FPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHKLIALS 363
Query: 302 EAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ EG V I E + VG+T Y++V+ T +++G VKI
Sbjct: 364 DQLAKEYASDYEGEVLEIIPEEAFKESDEAGMFVGYTDNYMKVVFKGTEDVIGKLVKVKI 423
Query: 357 TSVGRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D++ N R+SS
Sbjct: 424 QKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|89894341|ref|YP_517828.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfitobacterium hafniense Y51]
gi|423073927|ref|ZP_17062662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DP7]
gi|123091791|sp|Q24X58.1|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855203|gb|EHL07192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DP7]
Length = 447
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 184/371 (49%), Gaps = 29/371 (7%)
Query: 15 LVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
+ ++GC+ Q L+ L + + R++E EE K EV R+
Sbjct: 82 IAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVWEKPRETQ 141
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
++ L + K + I+ GC CTYC H RG S E ++ +R ++ G +
Sbjct: 142 ESVLLAA--KGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEIRALVETGCR 199
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EV L ++ +YG+D+ + LL + + DG +R ++P + + L E
Sbjct: 200 EVTLLGQNVNSYGQDLDRAYDFADLLKDVDS---IDGLWRVRFMTSHPKDLSDKLIETIA 256
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
H C + +H+P Q+GSD +L MNR+YT + + + + ++P + + TDII GFP
Sbjct: 257 AGTHLCEH--IHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKVIIPQVSLTTDIIVGFP 314
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+EDF QT+ LI++ ++ Q + R GTPAA+M +++P + K+R ++L +V A
Sbjct: 315 GETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQLITVQNA 374
Query: 304 FTPYLGMEGRVERIWIT-EIAADG------IHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ + R E I T E+ +G L G T+GY V+ P ++GT V I
Sbjct: 375 QS----LAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVVFPGEAQLIGTLVQVLI 430
Query: 357 TSVGRWSVFGE 367
W++FGE
Sbjct: 431 QDANSWTLFGE 441
>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
1221n]
gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
1221n]
Length = 432
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 13/227 (5%)
Query: 83 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142
+PI GCL C++C TKHAR L S+ ++++V V + +G E+ L+ D G YG D+
Sbjct: 139 IPIQEGCLSNCSFCITKHARRILVSHGIDAVVKAVERAVRNGAVEIQLTGMDLGTYGLDL 198
Query: 143 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-----RHPCVYSFL 195
LP L+ + + G M+RIGM NP EHL+ I + L VY FL
Sbjct: 199 YKTRKLPELVKEVSRRV--SGEYMIRIGMINP----EHLRYILDDLIDAINESSKVYRFL 252
Query: 196 HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 255
H+P+QSGS+ VLS M R Y++ ++ +V+ +PG+ IATDII G P E +EDFN+T+
Sbjct: 253 HIPLQSGSNKVLSVMRRNYSVEEYIEIVNEAKSRIPGVSIATDIIVGHPMEDEEDFNETL 312
Query: 256 NLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
+I+E +F +VH++ + RP T +A + +VP+ V K+R V E
Sbjct: 313 KVIRELEFERVHLAGYSIRPLTYSASLPQVPTRVKKERVLRALQVIE 359
>gi|410460472|ref|ZP_11314150.1| YqeV protein [Bacillus azotoformans LMG 9581]
gi|409927087|gb|EKN64233.1| YqeV protein [Bacillus azotoformans LMG 9581]
Length = 451
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 200/391 (51%), Gaps = 29/391 (7%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q + ++ ++ GV IV G Q ++++ V + K E ++
Sbjct: 67 KNPDAVVAVTGCYAQTAPAEILDIPGVDIVIGTQDRVKLLDYVRQYEKNREPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG L S E +V + + ++
Sbjct: 127 KARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRMPEDVVKQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ N +LL + ++ G +RI I + +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDLKDYNFAMLLRELDQKVV--GLKRIRISSIEASQITDEVI 243
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++ + ++RH LH+P+QSGSD+VL M R+YT + ++ L E +PG+ +
Sbjct: 244 DVLDKSEKIVRH------LHIPLQSGSDSVLKRMRRKYTTEFYVDRLNRLKEALPGLAVT 297
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
+D+I GFPGET+E+F +T NLI++ KF ++H+ + R GTPAARM+ +V + R
Sbjct: 298 SDVIVGFPGETEEEFMETYNLIRDNKFAELHVFPYSKRTGTPAARMEDQVDEEIKNDRVH 357
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLG 349
L S+ + EG + + E +G VG+T Y++V+ P +M+G
Sbjct: 358 RLISLSDQLAKEYASNYEGDILEVIPEEQFTEGPDRTDLYVGYTDNYLKVVFPGKEDMIG 417
Query: 350 TSALVKITSVGRWSVFGEVIKIL-NQVDDKI 379
VKIT VG GE + ++ +++++K+
Sbjct: 418 QIVKVKITQVGYPYSEGEFVSVVSDEIEEKV 448
>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
Length = 417
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 153/269 (56%), Gaps = 13/269 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL+ I A +G +R+GM NP + +E+A V + +Y FLH
Sbjct: 184 WDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAVFAENEELYDFLHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 241 PVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPTETDRDHAQSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + V K+RS+E++ V EA+ +G E
Sbjct: 301 LRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEVKREIVREAYADMVG-EV 359
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLV 341
R + + + E AD + Y QV+V
Sbjct: 360 REDCLVVEEGTADSVKC--RDSAYRQVIV 386
>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
Length = 453
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 180/373 (48%), Gaps = 18/373 (4%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRKKL 66
K+ + V GC+ Q G + KEL+ + +V G + + +V ++ GH V +L
Sbjct: 83 KRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIEEGGHHVEVLDAASS 142
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+LP R + + LPI +GC C+YC + RG S +E +V +A GVK
Sbjct: 143 FPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLEDIVAEAERYVAAGVK 202
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
E+ L ++ +YGRD+ P + A L G LR ++P + + + L
Sbjct: 203 EITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHPKDLTDEVIGKFATL 260
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R + LH+PVQSGSDAVL+AMNR YT + + +V L ++VP + ++TDII GFPGE
Sbjct: 261 R--SLMPALHLPVQSGSDAVLAAMNRRYTRAHYLELVRKLRDVVPDIALSTDIIVGFPGE 318
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFE--A 303
T +DF T L+ E + QV + R GTPAA M+ P +++R L + + A
Sbjct: 319 TAKDFENTYRLVDEVGYHQVFTFIYSKREGTPAASMEDTTPRETIQERFDRLVDLVQARA 378
Query: 304 FTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVP-----STGNMLGTSALVKIT 357
F G + + + + D L G + V P + + GT V+I
Sbjct: 379 FEANQADVGAIVEVLVEGASKRDAGLLAGKSPKNQTVHAPVPVGKTASELAGTIVPVRIN 438
Query: 358 SVGRWSVFGEVIK 370
W + GEV+
Sbjct: 439 EAKTWYLAGEVVN 451
>gi|443631840|ref|ZP_21116020.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347955|gb|ELS62012.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 451
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 197/388 (50%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G +KI
Sbjct: 367 AKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKIKIQKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ ++I V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRI---VEDEITEHMRLSS 451
>gi|384176166|ref|YP_005557551.1| hypothetical protein I33_2627 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595390|gb|AEP91577.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 451
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSQLDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|16079597|ref|NP_390421.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418032280|ref|ZP_12670763.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428280033|ref|YP_005561768.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|430758699|ref|YP_007208916.1| hypothetical protein A7A1_3207 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449095037|ref|YP_007427528.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452915199|ref|ZP_21963825.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
gi|1730990|sp|P54462.1|MTAB_BACSU RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis]
gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis]
gi|2634989|emb|CAB14485.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|351471143|gb|EHA31264.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959789|dbj|BAM53029.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7613]
gi|407965364|dbj|BAM58603.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7003]
gi|430023219|gb|AGA23825.1| Hypothetical protein YqeV [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028952|gb|AGE64191.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452115547|gb|EME05943.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
Length = 451
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|350266745|ref|YP_004878052.1| hypothetical protein GYO_2811 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599632|gb|AEP87420.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 451
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|403237548|ref|ZP_10916134.1| Putative methylthiotransferase yqeV [Bacillus sp. 10403023]
Length = 453
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 193/376 (51%), Gaps = 29/376 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRKKMLEYIDQYKQERQPINGVGNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E ++ + + ++ G KE
Sbjct: 133 ELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEEVIKQAQQLVNAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL LL + +++ G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAALLRDLESKVI--GLKRIRISSIEASQITDEIIEVLDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LHVP+QSGS+ VL M R+YT+ F + L + +PG+ + +D+I G
Sbjct: 250 KKVVRH------LHVPLQSGSNTVLKRMRRKYTMEFFAERLTKLRQALPGLALTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N I E+KF ++H+ + R GTPAARM+ ++ V +R L S+
Sbjct: 304 FPGETEEEFMETYNFINEHKFSELHVFPYSKRTGTPAARMEDQIDEEVKNERVHRLISLS 363
Query: 302 EAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V + E+ D G++ +G+T Y++V +T +M+G VK
Sbjct: 364 DQLAKEYASNYEGEVLEVIPEELDKDDPTSGLY-IGYTDNYLKVKFDATEDMIGKIVKVK 422
Query: 356 ITSVGRWSVFGEVIKI 371
IT G G+ +KI
Sbjct: 423 ITKAGYPYNEGKFVKI 438
>gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426]
gi|261418482|ref|YP_003252164.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC61]
gi|319767557|ref|YP_004133058.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC52]
gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
Length = 449
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 28/387 (7%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + R ++A G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQARQLVAAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH----LKEIAE 184
L+ TG YG D+ N LL + ++P G LRI I + LK +
Sbjct: 194 LTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLKRLRISSIEASQITDEVIDVLKRSEK 251
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P + + +D+I GFP
Sbjct: 252 IVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPELAVTSDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+++F +T N I+E +F ++H+ + R GTPAARM ++ R R L ++ +
Sbjct: 306 GETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKHDRVRRLIALSDQ 365
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E + L VG+T Y++V P+T M+G VKIT G
Sbjct: 366 LAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMVGELVKVKITKAG 425
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D++A + + SS
Sbjct: 426 YPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
Length = 441
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 163/302 (53%), Gaps = 17/302 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADVFAENEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP E + D +++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTEDEADHELSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G V++T FG+ +
Sbjct: 359 TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVEVTGHNTVYAFGDPV 416
Query: 370 KI 371
+I
Sbjct: 417 EI 418
>gi|310659093|ref|YP_003936814.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825871|emb|CBH21909.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 454
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 193/381 (50%), Gaps = 30/381 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEVR--- 59
AK + + V GC Q S D + +EGV++V G +++V VE+ +K H V
Sbjct: 85 AKKHNENAIIAVVGCYSQKSPDEVIAIEGVNLVMGTSDRNKIVTEVEKLDVKDHVVEVED 144
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
++ ++ AL + + K L I GC C+YC + RG + S ++ ++ V++
Sbjct: 145 IMKQRVFEALSIEETY-GKTRAFLKIQEGCDRFCSYCIIPYTRGPVRSRSINDIISEVKS 203
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI---- 175
+ +G KEV L+ +YG+D+G L++ I A DG +R P I
Sbjct: 204 LAKNGYKEVVLTGIHVASYGKDLGD--IRLIDVIKAINNIDGIHRIRTSSVEPLIITDDF 261
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
L LKEI + H H+ +QSGSD+VL MNR Y +++++ VD + ++ P I
Sbjct: 262 LSELKEIDKFCPH------FHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKIYPDAAI 315
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 294
TDII GFPGE+D +F +T +++ ++HI +F PR GT AA M +V + RS
Sbjct: 316 TTDIIVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVKPEIKNHRS 375
Query: 295 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
L + E +G E V + E + +GI+ GHT YV+V V S +++G
Sbjct: 376 EVLIELAKKNKLEFEKKLVGKEAEV----LFESSENGIY-EGHTTNYVKVYVQSDLDLIG 430
Query: 350 TSALVKITSVGRWSVFGEVIK 370
A V I + +FG++I+
Sbjct: 431 EIARVNIDRLENKKIFGKIIQ 451
>gi|297529334|ref|YP_003670609.1| MiaB family RNA modification protein [Geobacillus sp. C56-T3]
gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
Length = 449
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 28/387 (7%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + R ++A G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQARQLVAAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH----LKEIAE 184
L+ TG YG D+ N LL + ++P G LRI I + LK +
Sbjct: 194 LTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQITDEVIDVLKRSEK 251
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P + + +D+I GFP
Sbjct: 252 IVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPELAVTSDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+++F +T N I+E +F ++H+ + R GTPAARM ++ R R L ++ +
Sbjct: 306 GETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKHDRVRRLIALSDQ 365
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E + L VG+T Y++V P+T M+G VKIT G
Sbjct: 366 LAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMVGELVKVKITKAG 425
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D++A + + SS
Sbjct: 426 YPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
Length = 440
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 141/237 (59%), Gaps = 10/237 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V R+ +Y F+H
Sbjct: 184 WDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADVFARNEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV T + + ++TD I GFP E++ D ++++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVATFDDRLDHWTLSTDFIVGFPTESEADHERSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLG 309
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LTEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVG 357
>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
Length = 425
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEV 58
M + I KS K +VVAGC+ + + +K L V I+ + + + LKG E
Sbjct: 57 MISRIEYFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEK 116
Query: 59 RLLHRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 113
+ L D + KV + LPI GCLG+CTYC K ARG+L SY + +
Sbjct: 117 NGKSNENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLI 176
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
+ ++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM +
Sbjct: 177 FKKAEELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAK 233
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F L E+ E + V FLH+P+QSG D VL MNR Y++ +F +V++ + +
Sbjct: 234 FAEPLLDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNEFKLKIKNL 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 293
TD+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+R
Sbjct: 294 NFTTDVIVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKER 353
Query: 294 SRELTSV 300
S L +
Sbjct: 354 SEILNEL 360
>gi|299535792|ref|ZP_07049113.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
gi|424739156|ref|ZP_18167578.1| hypothetical protein C518_3693 [Lysinibacillus fusiformis ZB2]
gi|298728992|gb|EFI69546.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
gi|422947021|gb|EKU41423.1| hypothetical protein C518_3693 [Lysinibacillus fusiformis ZB2]
Length = 444
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 192/378 (50%), Gaps = 22/378 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +E+ + VR ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGYIEQYRAERQPINAVRNIMKNRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G E
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQAQQLVDAGYLE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + A + G LRI + + E+ EVL
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLEANVK--GLKRLRISSIEASQLTD---EVIEVL 246
Query: 187 RHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R V + LH+P+QSGSD VL M R+YT+ F + L E +P + + +D+I GFPG
Sbjct: 247 RESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N I+++KF ++H+ F PR GTPAARM+ ++ + +R L S+ +
Sbjct: 307 ETEEEFMETYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVHRLISLNDQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E +V + E DG L G+T Y++++ +++G VKIT
Sbjct: 367 AKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKIVFEGPESLIGQLVKVKITQ 426
Query: 359 VGRWSVFGEVIKILNQVD 376
G G+ +++L V+
Sbjct: 427 AGYPHSQGQFVRVLETVN 444
>gi|386759140|ref|YP_006232356.1| radical SAM protein [Bacillus sp. JS]
gi|384932422|gb|AFI29100.1| Radical SAM superfamily protein [Bacillus sp. JS]
Length = 451
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVNAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDSRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VGDEITEHMRLSS 451
>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
Length = 440
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 175/335 (52%), Gaps = 27/335 (8%)
Query: 55 GHEVRLLHRKKLPAL----DLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGH 104
G + +LH ++P+ + P V + V ILPI GC+ C+YC TK A G
Sbjct: 89 GVDAEILHWDEVPSYVLNGECPTVTPDAEPVLDGVVGILPIARGCMSNCSYCITKFATGR 148
Query: 105 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGST 163
+ S +VE V + R ++ G KE+ ++ +DTG YG D G LP LL+ I DG
Sbjct: 149 VDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEF 205
Query: 164 MLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 222
+R+GM NP I +E+ EV + +Y F+H PVQSGSD VL M R++ + FR V
Sbjct: 206 RVRLGMANPGGIHGIHEELVEVFADNEELYDFVHAPVQSGSDEVLEEMRRQHRVEKFREV 265
Query: 223 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
V+T + + ++TD I GFP ET+ D ++++L+ E + ++++++F RPGT AA M
Sbjct: 266 VETFDDRLDHWTLSTDFIVGFPTETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAAEM 325
Query: 283 KKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYV 337
K + V K+RS+ ++ V EA+ +G E + + E D + Y
Sbjct: 326 KGLGGTVKKERSKAMSELKMEVVGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDGAYR 381
Query: 338 QVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
Q++V + G +G V++T FG+ +
Sbjct: 382 QIIVQNATERGVDVGDFLEVEVTGHNTVYAFGDPV 416
>gi|375009588|ref|YP_004983221.1| 2-methylthioadenine synthetase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288437|gb|AEV20121.1| 2-methylthioadenine synthetase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 449
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 28/387 (7%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + R ++A G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQARQLVAAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH----LKEIAE 184
L+ TG YG D+ N LL + ++P G LRI I + LK +
Sbjct: 194 LTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLKRLRISSIEASQITDEVIDVLKRSEK 251
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P + + +D+I GFP
Sbjct: 252 IVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPELAVTSDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+++F +T N I+E +F ++H+ + R GTPAARM ++ R R L ++ +
Sbjct: 306 GETEDEFIETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKHDRVRRLIALSDQ 365
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E + L VG+T Y++V P+T M+G VKIT G
Sbjct: 366 LAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMVGELVKVKITKAG 425
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D++A + + SS
Sbjct: 426 YPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
Length = 451
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 197/387 (50%), Gaps = 22/387 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITDKVIEVLD-- 247
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPGE
Sbjct: 248 RSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPGE 307
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
T+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 308 TEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQLA 367
Query: 306 PYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ E + I A VG+T Y++V+ T +M+G VKI G
Sbjct: 368 KEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKAG 427
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
G+ +++ V+D+I + R+SS
Sbjct: 428 YPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
Length = 414
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 135/223 (60%), Gaps = 5/223 (2%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S T+E+ V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKARALVHAGAKELRITGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G +LP LL+ I A +G +R+GM NP I +E+AEV + +Y F+H
Sbjct: 182 WDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHGIHEELAEVFAENEKLYDFIHA 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR +V T + ++TD I GFP ET+ D +++L
Sbjct: 239 PVQSGSDEVLEEMRRQHKVEKFREIVKTFDRELDHWTLSTDFIVGFPTETEADHELSMDL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
++E + +V++++F RP T AA MK + + K+RS+ ++
Sbjct: 299 LREIRPEKVNVTRFSKRPKTDAADMKGLGGTIKKERSKAMSEA 341
>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
Length = 417
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 164/299 (54%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALVHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ DG +R+GM NP + +E+A V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVHGIREELAAVFADNEELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP ET++D Q++ L+
Sbjct: 242 VQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTLSTDFIVGFPTETEDDHRQSLELL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + V K+RS+E+++ V E + +G R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSALKREIVSEVYESMVGQR-R 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + E AD + Y Q++V + G G +++T+ FGE I
Sbjct: 361 EDCLVVEEGTADSVKC--RDSAYRQIIVQNADDHGLEPGDFVDLEVTAHETMYAFGEPI 417
>gi|433444358|ref|ZP_20409277.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
gi|432001650|gb|ELK22523.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
Length = 450
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 199/387 (51%), Gaps = 27/387 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-PAL 69
V GC Q S ++ + GV IV G Q +++E +E+ + + VR + + ++ L
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRSKILEYIEQFKQQRQPINGVRNIMKTRVYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE+
Sbjct: 135 DVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG D+ N +LL I ++ G LRI I + E+ +VLR
Sbjct: 194 LTGIHTGGYGEDMKDYNFAMLLRDIDEQVK--GLKRLRISSIEASQITD---EVIDVLRQ 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+AVL M R+YT F + L E+ P + + +D+I GFPGET
Sbjct: 249 SDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFPDLAVTSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T I+E +F ++H+ + R GTPAARM +V V +R L ++ +
Sbjct: 309 EEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVKNERVHRLIALSDQLAK 368
Query: 307 YLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E+ + G++ VG+T Y++V P+T M+G VKIT G
Sbjct: 369 EYASKFEGQVLEVIPEELYKEDPTSGLY-VGYTDNYLKVKFPATEEMVGQLVKVKITKAG 427
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++++ + I R+SS
Sbjct: 428 YPYNEGEFVRVIDDAHEAI----RLSS 450
>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
Length = 444
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 17/300 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELADVFAENEELYDFVHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T E + ++TD I GFP E + D ++++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDERLDHWTLSTDFIVGFPTEDEADHERSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVSPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V G +G V++T FG+ +
Sbjct: 359 TFEVLVVEEGTGDSVKC--RDGAYRQIIVQGATDRGVAVGDFLTVEVTGHNTVYAFGDPV 416
>gi|389571842|ref|ZP_10161930.1| 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388428328|gb|EIL86125.1| 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 452
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 190/380 (50%), Gaps = 28/380 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +EE + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEYRRERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDLKDYNFAKLLKELDERVA--GLKRIRISSIEASQITDEVIEVLDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V +R L ++
Sbjct: 304 FPGETEEEFMETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALS 363
Query: 302 EAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG H VG+T Y++V+ T NM+G VK
Sbjct: 364 DQLAKEYASAYEGDVLEIIPEESFKEQDGTHNLYVGYTDNYMKVVFEGTENMIGRLVKVK 423
Query: 356 ITSVGRWSVFGEVIKILNQV 375
IT G G+ ++I + V
Sbjct: 424 ITKAGYPYNEGQFVRISDDV 443
>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
Length = 440
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 172/333 (51%), Gaps = 27/333 (8%)
Query: 57 EVRLLHRKKLPAL----DLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLG 106
+ +LH ++PA + P V + V +LPI GC+ C+YC TK A G +
Sbjct: 91 DAEILHWDEVPAYVLNGECPTVTPDAEPVLDGVVGLLPIARGCMSNCSYCITKFATGRVD 150
Query: 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTML 165
S V V + R ++ G KE+ ++ +DTG YG D G LP LL+ I DG +
Sbjct: 151 SPPVAENVEKARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRV 207
Query: 166 RIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 224
R+GM NP I +E+AEV + +Y F+H PVQSGSD VL M R++ + FR VVD
Sbjct: 208 RLGMANPGGIHGIHEELAEVFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVD 267
Query: 225 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 284
T E + ++TD I GFP E++ D ++++L+ E + ++++++F RPGT AA MK
Sbjct: 268 TFDERLDHWTLSTDFIVGFPTESEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKG 327
Query: 285 VPSAVVKKRSRELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
+ V K+RS+ ++ V EA+ +G E + + E D + Y Q+
Sbjct: 328 LGGTVKKERSKAMSELKMEVVGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDGAYRQI 383
Query: 340 LVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
+V + +G V++T FG+ +
Sbjct: 384 IVQGAADRGVEVGDFLTVEVTGHNTVYAFGDPV 416
>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
Length = 417
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 165/299 (55%), Gaps = 14/299 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++E V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGAKELRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + + +L +G +R+GM NP + +E+A V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATVFAENDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYLEVVETFDDHLDYWTLSTDFIVGFPTETDHDHAQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + +V++++F RPGT AA MK + + K+RS+E+++ V EA +G E R
Sbjct: 302 RETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREIVGEAHASMVG-EVR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVI 369
+ + + + AD + Y Q++V + + G +++T+ FGE +
Sbjct: 361 EDCLVVEDGTADSVKC--RDSAYRQIIVQNASDHGIEPGDFVDLEVTAHETMYAFGEPV 417
>gi|392957221|ref|ZP_10322745.1| hypothetical protein A374_10790 [Bacillus macauensis ZFHKF-1]
gi|391876628|gb|EIT85224.1| hypothetical protein A374_10790 [Bacillus macauensis ZFHKF-1]
Length = 450
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 188/380 (49%), Gaps = 19/380 (5%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEV-RLL 61
K+ + V GC Q S ++ + GV IV G Q + + + EE L + V ++
Sbjct: 67 KNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKMLTYIAQFKEERLPINGVSNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG L S ++ + + ++
Sbjct: 127 KARVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDASEVITQAQQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ T YG D+ N +LL + ++ G LRI I + +
Sbjct: 186 DAGYKEIVLTGIHTAGYGEDLKDYNFAMLLKELDEKVV--GLKRLRISSIEASQITDEV- 242
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + + LH+P+QSGSD+VL M R+YT+ F + L + +PG+ I +D+I
Sbjct: 243 -IAVMDASDTIVPHLHIPLQSGSDSVLRRMRRKYTMDMFADRIGKLKKALPGLAITSDVI 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+E+F +T N I+++KF ++H+ + R GTPAARM+ +VP V +R L
Sbjct: 302 VGFPGETEEEFMETYNFIRDHKFSELHVFPYSKRTGTPAARMEDQVPEDVKNERVHRLIE 361
Query: 300 VFEAFTPYLGMEGRVERIWI---TEIAADGI--HLVGHTKGYVQVLVPSTGNMLGTSALV 354
+ E + + E +G+ H VG+T Y++V P+ +M+G V
Sbjct: 362 LSNQLAKEYASHYENEVVDVIPEEEYKEEGVTGHFVGYTSNYLKVRFPAREDMIGKLVKV 421
Query: 355 KITSVGRWSVFGEVIKILNQ 374
KIT G G+ + IL +
Sbjct: 422 KITKAGYPYNDGQFVTILEE 441
>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
Length = 438
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 32/368 (8%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLKGHEVR 59
++ K + V GC Q S ++ +EGV +V G Q +++V+ V E +K +V
Sbjct: 69 QNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIKVADVM 128
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L R LD+ + RN L I GC CTYC +ARG + S T ES++ + ++
Sbjct: 129 KLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVLKQAQS 185
Query: 120 VIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
++ G E+ L+ T YG+D + LL + ++ G LRI I +
Sbjct: 186 LVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQITQE 243
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ ++ + P + LH+P+QSG DA L MNR YT ++F + L E +P + + TD
Sbjct: 244 IIDL--IAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLPSLSVTTD 301
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR----- 293
+I GFPGET+E+F QT I++ F Q+H+ + R GTPAARMK VK
Sbjct: 302 VIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQIDGHVKHDRVKSL 361
Query: 294 ---SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
S+ L S F ++ G+ + I E D +VGH Y++V V + +G
Sbjct: 362 MDLSQRLQSEFASYQI-----GKTLEVLIEERHGD--RMVGHASNYLKVHVDLPDSSIGH 414
Query: 351 SALVKITS 358
VKI S
Sbjct: 415 IYRVKILS 422
>gi|126700065|ref|YP_001088962.1| MiaB-like tRNA modifying enzyme [Clostridium difficile 630]
gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-66c26]
gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
107932]
gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-63q42]
gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
ATCC 43255]
gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-76w55]
gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-97b34]
gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-37x79]
gi|260684029|ref|YP_003215314.1| radical SAM protein [Clostridium difficile CD196]
gi|260687689|ref|YP_003218823.1| radical SAM protein [Clostridium difficile R20291]
gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-32g58]
gi|384361672|ref|YP_006199524.1| radical SAM protein [Clostridium difficile BI1]
gi|423092477|ref|ZP_17080281.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile
630]
gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
CD196]
gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
R20291]
gi|357553979|gb|EHJ35715.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
Length = 432
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 188/378 (49%), Gaps = 31/378 (8%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 65 KKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD-- 122
Query: 65 KLPALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V
Sbjct: 123 -----DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIV 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V+ + +G KEV L+ +YG+D+ LL+ I + +R+ P
Sbjct: 178 DEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPIL 237
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + EVL+ V H+ +QSG D L MNR YT +++T+VD L +P +
Sbjct: 238 FTDEF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVA 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TD+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + R
Sbjct: 296 ITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFR 355
Query: 294 SRELTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S +L ++ F F T ++G E V + E +G G T Y++V+V S N+
Sbjct: 356 SEQLLNLSKVNFNKFATKFIGRELDV----LFEQNIEGNKYEGLTSNYIRVVVESDKNIQ 411
Query: 349 GTSALVKITSVGRWSVFG 366
G VKI V V G
Sbjct: 412 GQILKVKINDVKDEYVEG 429
>gi|392395125|ref|YP_006431727.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390526203|gb|AFM01934.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 452
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 186/340 (54%), Gaps = 19/340 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLHRKKLP 67
+VV GC Q + ++ ++EGV +V G Q R++E++ E+ K + K
Sbjct: 97 VVVMGCYAQTAPGEILDIEGVDLVLGTQDRGRILELIAQVKQEQQPKNSVHAIWDAKAFE 156
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L L + ++ L I GC CTYC +ARG + S E+ V ++A G KE
Sbjct: 157 ELPLIE-EESRTRATLKIQEGCNKFCTYCIIPYARGPVRSRIPENAVTEAEKLVAAGYKE 215
Query: 128 VWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG+YG D+G N + L ++A++ G LR+ P +E E+ +V+
Sbjct: 216 IVLTGIHTGSYGEDLGENWDLARLVKVLAQV--KGLHRLRLSSIEP---MEFTPELIDVI 270
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
HP V LH+P+Q GSDA+L+ M R Y + +F+ ++ L L+PG+ I TD+I GFPG
Sbjct: 271 INHPTVCPHLHIPLQCGSDAILTRMKRPYAVKEFKELILRLNALLPGIAITTDVIVGFPG 330
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-EA 303
ET+++F +++ ++ F VH+ + R GTPAA+ ++P+ + ++R ++L V ++
Sbjct: 331 ETEQNFRESLETVRSCGFSGVHVFPYSKRKGTPAAKYPDQIPNKIKEQRVKDLMQVARKS 390
Query: 304 FTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
Y+ G+ + I ++ +G+ GHT+ Y+QV +P
Sbjct: 391 QEDYVRRFIGQTVEVLIERVSPEGV-AAGHTRNYIQVHLP 429
>gi|438002158|ref|YP_007271901.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
gi|432178952|emb|CCP25925.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
Length = 435
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 187/373 (50%), Gaps = 24/373 (6%)
Query: 10 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 62
SAK + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 70 SAK--VAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 183 AEVLRHPC----VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
E L+ C + HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKICHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360
Query: 298 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
S+ E ++++ + D + G T+ Y++V V S ++ V+
Sbjct: 361 ISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFY-EGLTENYIKVGVKSKQDLHNKIIHVR 419
Query: 356 ITSVGRWSVFGEV 368
+ VFGEV
Sbjct: 420 LKKNFNDYVFGEV 432
>gi|311069144|ref|YP_003974067.1| YqeV protein [Bacillus atrophaeus 1942]
gi|419820208|ref|ZP_14343820.1| YqeV protein [Bacillus atrophaeus C89]
gi|310869661|gb|ADP33136.1| YqeV [Bacillus atrophaeus 1942]
gi|388475620|gb|EIM12331.1| YqeV protein [Bacillus atrophaeus C89]
Length = 451
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYRQERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL + A + DG +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDARV--DGLKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T + IKE +F ++H+ + R GTPAARM+ +V V +R +L ++ +
Sbjct: 307 ETEEEFMETYDFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHQLIALSDQL 366
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E + VG+T Y++V+ T +++G VKI
Sbjct: 367 AKEYASDYEGEVLEIIPEEAFKETNESNLFVGYTDNYMKVVFKGTEDLIGKLVKVKIEKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ ++++ A + R+SS
Sbjct: 427 GYPYNEGQFVRV---IEEETADHIRLSS 451
>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
Length = 441
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 17/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADVFAENEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP E + D +++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTEDEADHELSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G V++T FG+ +
Sbjct: 359 TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVEVTGQNTVYAFGDPV 416
Query: 370 K 370
+
Sbjct: 417 E 417
>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 435
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 20/369 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD-- 70
+ V GC Q S ++ E+ GV+ +VG R+V++VEE G + + A D
Sbjct: 73 IAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPVQAVADVMAKDCF 131
Query: 71 --LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP + K L I GC C YC +ARG + S E++V +I G +E
Sbjct: 132 DELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVRSATQLIQQGYQE 191
Query: 128 VWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+ L+ GAYG+D+ +NL L+ + A LP G T LR+G P I + L I
Sbjct: 192 IVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEPHDINQQL--ITA 246
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V HP + LH+P+QSG D +L+ M R YT F ++D + + + G+ I +D+I GFP
Sbjct: 247 VANHPNICRHLHIPLQSGDDQILAGMQRRYTAGQFLELIDHIKQTIAGVAITSDVIVGFP 306
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+ F T+ + F +H+ ++ PR GTPAA M +VP AV + RS+ L ++ +
Sbjct: 307 GETEAHFQNTMQTVSRAAFASIHVFKYSPRKGTPAAAMPDQVPPAVKEDRSKRLIALGQR 366
Query: 304 FTPYLGME--GRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ G+ + + + GH+ Y++V+ P+ ++ G V I G
Sbjct: 367 LAHDFAVRQVGKNLAVLVEQPCEKLTGFYEGHSDNYLKVVFPADESLRGKIVTVHIEEAG 426
Query: 361 RWSVFGEVI 369
+ G +I
Sbjct: 427 DAWLKGRII 435
>gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 467
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 199/387 (51%), Gaps = 27/387 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-PAL 69
V GC Q S ++ + GV IV G Q +++E +E+ + + VR + + ++ L
Sbjct: 92 VTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYIEQFKQQRQPINGVRNIMKTRVYEEL 151
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S + ++ + + ++ G KE+
Sbjct: 152 DVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKEIV 210
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG D+ N +LL + ++ G LRI I + E+ +VLR
Sbjct: 211 LTGIHTGGYGEDMKDYNFAMLLRDMDEQV--KGLKRLRISSIEASQITD---EVIDVLRQ 265
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+AVL M R+YT F + L E+ P + + +D+I GFPGET
Sbjct: 266 SDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFPDLAVTSDVIVGFPGET 325
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T I+E +F ++H+ + R GTPAARM +V V +R L ++ +
Sbjct: 326 EEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVKNERVHRLITLSDQLAK 385
Query: 307 YLG--MEGRVERIWITEI----AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E+ A G++ VG+T Y++V P+T M+G VKIT G
Sbjct: 386 EYASKFEGQVLEVIPEELYKEDPASGLY-VGYTDNYLKVKFPATEEMVGQLVKVKITKAG 444
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++++ + I R+SS
Sbjct: 445 YPYNEGEFVRVIDNAHEAI----RLSS 467
>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 432
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 185/383 (48%), Gaps = 30/383 (7%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
I K K VVA GC Q S ++K +EGV +V G +R+V+++EE+ K +E
Sbjct: 61 FIRKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE-- 118
Query: 60 LLHRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 109
K DL VR N+ + + GC CTYC ARG + S T
Sbjct: 119 ----KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRT 174
Query: 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 169
+E V RT+ G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 175 IEDSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSS 232
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
P I + E A C + H+ +QSGS+ +L AMNR YT D+ + +
Sbjct: 233 VEPIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNILKAMNRRYTREDYIEKANIIRNY 290
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 288
+P + DII GFPGE+ EDF ++ ++KE F ++H+ ++ R T AA MK ++
Sbjct: 291 MPHAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKNQIDGN 350
Query: 289 VVKKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
V K+RS +L ++ E + E + + + E DG++ G+T Y++V S ++
Sbjct: 351 VKKERSEKLIALGEEYQEIFERENMKTTQSVLFEEEHDGVYY-GYTTNYIRVKAKSEEDL 409
Query: 348 LGTSALVKITSVGRWS---VFGE 367
VKI G + V GE
Sbjct: 410 TNKIKKVKILDTGEIANCEVLGE 432
>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
Length = 456
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 191/393 (48%), Gaps = 51/393 (12%)
Query: 15 LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR-------KK 65
+ V GC Q + D + +EGV +VG +V++VE KG +V+ + ++
Sbjct: 75 VAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAVEDIARCHDFEE 134
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
LP + + + L I GC C+YC +ARG L S + E+++ VR ++ G
Sbjct: 135 LPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVLAGVRNLVESGF 190
Query: 126 KEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP----PFILEHL 179
KEV L+ TGAYGR GV+L LL A++A +P G LR+ P P +L+ +
Sbjct: 191 KEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEPNDITPDLLDLM 247
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
RH LH+P+QSG D +L M R Y + FR ++ ++ + +P + I TDI
Sbjct: 248 AAGPPFCRH------LHIPLQSGDDYILKRMRRRYDTNYFRRLLASVRDKLPEVGITTDI 301
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
+ GFPGE DE F +KE +F +H+ ++ PR GTPAA +V V ++RSR+L
Sbjct: 302 MVGFPGEEDEHFRNGCTFVKEMQFSALHVFKYSPRRGTPAAGFPDQVDPRVKEERSRKLI 361
Query: 299 SVFEAFTPYLGME--GRVERIWITE--------------------IAADGIHLVGHTKGY 336
+V + GR + + + + A G G T Y
Sbjct: 362 AVGHSLAQSFAARFLGRTASVLVEQPVDISEHLFSQVDQDLSGDAMNASGELFEGLTDNY 421
Query: 337 VQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
V+V P+ ++ G A VK+T +G + G +I
Sbjct: 422 VRVYFPAQDSLRGQLADVKVTELGGTGLKGRII 454
>gi|358061030|ref|ZP_09147714.1| hypothetical protein SS7213T_12252 [Staphylococcus simiae CCM 7213]
gi|357256483|gb|EHJ06847.1| hypothetical protein SS7213T_12252 [Staphylococcus simiae CCM 7213]
Length = 448
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 189/382 (49%), Gaps = 19/382 (4%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV +V G Q +++ +EE K + ++
Sbjct: 67 KNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIEEFRKERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+K LD+P ++ L I GC CT+C ARG + S E +V + ++
Sbjct: 127 KNRKYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG+D+ NL LL + DG +RI + +
Sbjct: 186 NSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---IDGLERIRISSIEASQLTD--- 239
Query: 181 EIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ +VL H V LH+P+QSGSD VL M R+YT+ F + L +P + + +D+
Sbjct: 240 EVIDVLEHSTKVVRHLHIPLQSGSDTVLKRMRRKYTMERFSERLTKLHHALPDLAVTSDV 299
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGET+E+F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 300 IVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLI 359
Query: 299 SVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++ + E + + A I LVG+ Y++V +++G VKI
Sbjct: 360 TLSNQLGKEYASKFDQEVLEVIPEEAGEIDGTLVGYADNYMKVQFEGDESLIGQIVKVKI 419
Query: 357 TSVGRWSVFGEVIKILNQVDDK 378
T G+VIK+++ +K
Sbjct: 420 TKADYPINIGQVIKVVDHASNK 441
>gi|357420096|ref|YP_004933088.1| MiaB family RNA modification protein [Thermovirga lienii DSM 17291]
gi|355397562|gb|AER66991.1| RNA modification enzyme, MiaB family [Thermovirga lienii DSM 17291]
Length = 441
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 184/370 (49%), Gaps = 17/370 (4%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL--HRKKLPAL 69
+ V GC+ Q GS+ + + V +V G + + +V E + K E LL ++L L
Sbjct: 76 VAVIGCMAQRLGSKFMDRFKSVCLVAGPRNLGKVPEALSNIAKNEERVLLLDDPRELSDL 135
Query: 70 DLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
D P +RR N + + I GC CTYC RG S E + + ++ADGV+E+
Sbjct: 136 DCPPLRRDNPWRAYITIAHGCDNFCTYCIVPFTRGRFRSRAPEEIFKEIDFLVADGVREI 195
Query: 129 WLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L ++ +YG D G LL + ++ D ++R ++P E + ++
Sbjct: 196 ILLGQNVNSYGADFDNGYRFSNLLRDVASDERVD---LVRFLTSHPKDFTEDIVDVMASN 252
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
C +++P+QSGSD +LS MNR YT+ + +V+T+ + + I +D+I GFPGE
Sbjct: 253 SKIC--PAINLPIQSGSDRILSLMNRGYTVEQYAKIVETIRNKLEEVAITSDLIVGFPGE 310
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 306
T+EDFN +V+ +K ++F VH + + PR GT A+MK S K R + + +
Sbjct: 311 TEEDFNASVDALKRFRFDLVHTAAYSPREGTAGAKMKDQLSEEEKYRRLNIVNELQNKIS 370
Query: 307 Y---LGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
Y ++G+ ++ + + G L+ G T VLV +LG V IT W
Sbjct: 371 YEINASLKGKKYKVLLDSLPPKGEGLLQGRTPTDKVVLVEGDPGLLGKFVEVSITEAEHW 430
Query: 363 SVFGEVIKIL 372
+ G++ KI+
Sbjct: 431 CLRGKLEKII 440
>gi|220932005|ref|YP_002508913.1| MiaB family RNA modification protein [Halothermothrix orenii H 168]
gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
Length = 450
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 183/368 (49%), Gaps = 22/368 (5%)
Query: 17 VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE--ETLKGHEVRLLHRKKLPAL 69
V GC+ Q + ++L I G I + E+++ + +G + + ++++
Sbjct: 80 VGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKRIKEERGRIIEVWNQEEGLIP 139
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P R + F + I GC CTYC + RG S ++ R + ++GVKE+
Sbjct: 140 DIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRERSRPAADIISEARKLASEGVKEIT 199
Query: 130 LSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ +YG+D+ ++ LL + +G +R ++P + + +I +
Sbjct: 200 LLGQNVNSYGKDLKEDIDFADLLKRLNR---VEGIKRIRYMTSHPRDFSDKMIKIIKECD 256
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
C + H+PVQSGS +L MNR YT +++ ++ + +P I TDII GFPGET
Sbjct: 257 KVCEH--FHLPVQSGSTRILKKMNRGYTQAEYLNLIKKIKSQIPDYSITTDIIVGFPGET 314
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE----- 302
+EDF +T+ +I+E +F + ++ PR GTPAAR K S +K+ LT + E
Sbjct: 315 EEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQVSEKIKQDR--LTRLIEVQNSI 372
Query: 303 AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
+ ++G+ + I E + G T+ V+VP N+ G A VKI VG
Sbjct: 373 SLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVPRNENLKGQIANVKINRVGS 432
Query: 362 WSVFGEVI 369
W+++GEVI
Sbjct: 433 WTLYGEVI 440
>gi|373494777|ref|ZP_09585376.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
gi|371967821|gb|EHO85289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
Length = 438
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 183/365 (50%), Gaps = 17/365 (4%)
Query: 17 VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q R + ++ I G I + E++E+ E V ++ +
Sbjct: 79 VCGCMMQQQRVVDIIKAKYPWVDVIFGTNSIHHIPELIEKVSMEKEKLVDIIENTEEIVE 138
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R ++ I GC CTYC + RG S E+++ VR ++ DGVKE+
Sbjct: 139 GLPAKRLFNHKALVNIMFGCNNFCTYCIVPYTRGREKSRRPEAILAEVRELVEDGVKEIM 198
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ +Y D G + LL ++ E+ DG +R +NP + + L E V
Sbjct: 199 LLGQNVNSYDGD-GTSFAELL-KMINEI--DGLERIRFMTSNPKDLSDELIEAFTVCDKL 254
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
C LH+P+QSGS+ VL MNR+YT D+ +++ L VP + ++TDII GFPGETD+
Sbjct: 255 C--HNLHLPIQSGSNRVLKRMNRKYTREDYLKLIEKLRIRVPDITLSTDIIVGFPGETDD 312
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYL 308
DF +T++L+KE ++ + R GTPA + +V + +R L S +
Sbjct: 313 DFEETLSLVKEVEYDSAFTFIYSIRKGTPAEKFDNQVEESEKHRRFDLLVSTVNEISEKK 372
Query: 309 G--MEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
+ R+E+I + ++ + + L G T G+ V +M+G+ V+IT V +S+
Sbjct: 373 NKVYQDRIEKILVDGVSKNNKLMLTGRTDGFKLVNFAGKKDMIGSLVDVRITDVKTFSLL 432
Query: 366 GEVIK 370
GEVI+
Sbjct: 433 GEVIE 437
>gi|52081091|ref|YP_079882.1| hypothetical protein BL02101 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644951|ref|ZP_07999184.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
gi|404489973|ref|YP_006714079.1| tRNA methylthiotransferase YqeV [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683069|ref|ZP_17657908.1| hypothetical protein MUY_02922 [Bacillus licheniformis WX-02]
gi|52004302|gb|AAU24244.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348972|gb|AAU41606.1| tRNA methylthiotransferase YqeV [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317392760|gb|EFV73554.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
gi|383439843|gb|EID47618.1| hypothetical protein MUY_02922 [Bacillus licheniformis WX-02]
Length = 451
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 197/388 (50%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIKQYQEERQPINGVSNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIRQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL + + + G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAQLLKELDSRVK--GLKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + LH+P+QSGS++VL M R+YT+ F + L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVRHLHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM +V V +R +L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDGQVDENVKNERVHKLIALSDQL 366
Query: 305 TPYLG--MEGRVERIWITEI---AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V I E +G LVG+T Y++V+ + +++G VKI
Sbjct: 367 AKEYASDYEGDVLEIIPEEPFTETGEGNLLVGYTDNYIKVVFEGSEDLIGQLVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ +D + N R+SS
Sbjct: 427 GYPYNKGQFVRV---AEDDVRENIRLSS 451
>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 446
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 178/370 (48%), Gaps = 21/370 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL----LHRKKLPA 68
+ V GC PQ + +K LEGV IV G++ +VE+VE+ L + LH + P
Sbjct: 80 IAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAIHLHDSR-PK 138
Query: 69 LDLPKVRRNKFVE------ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ ++ F + L I GC C+YC +ARGHL S E ++ ++ ++
Sbjct: 139 GEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDVISEIKQAVS 198
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+G KE+ L+ + GAYGR+ NLP L + + G +R+ P I L E+
Sbjct: 199 NGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQEITIGLLEL 257
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
C + LH+P+QSG + +L AMNR+Y+ D+R +V E P + I TDII G
Sbjct: 258 VTNSEKICKH--LHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSIAITTDIIVG 315
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGE+ F T +K+ F +HI Q+ PR TPA +V S K RS+EL +
Sbjct: 316 FPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKARSQELIEIS 375
Query: 302 EAFTPYLGMEGRVER---IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+ + E +++ + + + D V T V V S N+ V+I S
Sbjct: 376 RDLS-RVYHEQFIDKTVPVLVEKHEEDVASGVSDTYLKVTFNVESEINLYNKICQVQINS 434
Query: 359 VGRWSVFGEV 368
V+GE+
Sbjct: 435 ADEEMVYGEL 444
>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
Length = 441
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 17/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADVFAENEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP E + D +++L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTEDEADHELSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G V++T FG+ +
Sbjct: 359 TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVEVTGHNTVYAFGDPV 416
Query: 370 K 370
+
Sbjct: 417 E 417
>gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
Length = 449
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 196/385 (50%), Gaps = 24/385 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q ++++ VE+ + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYVEQFQRERQPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S + ++ + R ++A G KE+
Sbjct: 135 DVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQARQLVAAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG D+ N LL + ++P G +RI + + E+ +VLR
Sbjct: 194 LTGIHTGGYGTDLKDYNFAALLRDLDEQVP--GLKRIRISSIEASQLTD---EVIDVLRR 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+ VL M R+YT+ F + L E+ P + + +D+I GFPGET
Sbjct: 249 SDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLARLREVFPELAVTSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T N I+E +F ++H+ + R GTPAARM ++ R R L ++ +
Sbjct: 309 EEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPDQIDEETKHDRVRRLIALSDQLAK 368
Query: 307 YLG--MEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
EG+V + E + G++ +G+T Y++V P+T M+G VKIT G
Sbjct: 369 EYASRFEGQVLEVIPEEHDKEEPGMY-IGYTDNYLKVRFPATEEMVGELVKVKITKAGYP 427
Query: 363 SVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D+ + ++SS
Sbjct: 428 YNEGEFVRV---VSDEAVRSVKLSS 449
>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
Length = 441
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 17/301 (5%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+A+V + +Y F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADVFAENEELYDFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP E + D +++L
Sbjct: 241 PVQSGSDDVLGDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFPTEDEADHELSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYESMVGE-- 358
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
E + + E D + Y Q++V + G +G V++T FG+ +
Sbjct: 359 TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVEVTGHNTVYAFGDPV 416
Query: 370 K 370
+
Sbjct: 417 E 417
>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying protein [Tepidanaerobacter acetatoxydans
Re1]
gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter acetatoxydans
Re1]
Length = 435
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 188/373 (50%), Gaps = 24/373 (6%)
Query: 10 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 62
SAK + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 70 SAK--VAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 183 AEVLRHPC-VYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
E L+ C + F HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS L
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSHRL 360
Query: 298 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
S+ E ++++ + D + G T+ Y++V V S ++ V+
Sbjct: 361 ISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFY-EGLTENYIKVGVKSKQDLHNKIIHVR 419
Query: 356 ITSVGRWSVFGEV 368
+ VFGEV
Sbjct: 420 LKKNFNDYVFGEV 432
>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
Length = 446
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 175/339 (51%), Gaps = 25/339 (7%)
Query: 15 LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--------RLLHRK 64
+VV GC Q + D ++ +EGV IV G + +V++VEE + E R+ +
Sbjct: 77 VVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGETVNTVYDSCRIERFE 136
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+LPA R++ + I GC CTYC +ARG + S +ES+V + +G
Sbjct: 137 ELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRIESVVEEATRLTGEG 192
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
KE+ LS GAYG D +L L+ + +P G +R+G P E E+ E
Sbjct: 193 FKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSVEP---QEFTPELLE 246
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ HP V H+P+QSGSDAVL M R Y DF V + +++PG+ I +D+I GFP
Sbjct: 247 AVVHPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMIPGVAITSDVIVGFP 306
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-E 302
GE + D+ + L + +H+ + PR GTPAA ++PSAV ++R++ L + E
Sbjct: 307 GEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAVKQERAQRLAKLARE 366
Query: 303 AFTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVL 340
+ Y G G++ + + E DG+ GHT Y++V
Sbjct: 367 LASDYAKGFVGQIREV-LAEEQVDGV-WTGHTDNYLKVF 403
>gi|423084190|ref|ZP_17072695.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|423086753|ref|ZP_17075144.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
gi|357543237|gb|EHJ25270.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|357545862|gb|EHJ27825.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
Length = 432
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 188/378 (49%), Gaps = 31/378 (8%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 65 KKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD-- 122
Query: 65 KLPALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V
Sbjct: 123 -----DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIV 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V+ + +G KEV L+ +YG+D+ LL+ I + +R+ P
Sbjct: 178 DEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPIL 237
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + EVL+ V H+ +QSG D L MNR YT +++T+VD L +P +
Sbjct: 238 FTDEF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVA 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TD+I GFPGET+E+F +T ++E + Q+HI ++ PR GTPAA M+ +V + R
Sbjct: 296 ITTDVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFR 355
Query: 294 SRELTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S +L ++ F F T ++G E V + E +G G T Y++V+V S N+
Sbjct: 356 SEQLLNLSKVNFNKFATKFIGRELDV----LFEQNIEGNKYEGLTSNYIRVVVESDKNIQ 411
Query: 349 GTSALVKITSVGRWSVFG 366
G VKI V V G
Sbjct: 412 GQILKVKINDVKDEYVEG 429
>gi|345005921|ref|YP_004808774.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
gi|344321547|gb|AEN06401.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
Length = 416
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 158/293 (53%), Gaps = 15/293 (5%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GC+ C+YC TK A G + S ++E V + R ++ G KE+ ++ +DTG YG D
Sbjct: 126 ILPIARGCMSNCSYCITKQATGRIDSPSIEENVEKARALVHAGAKELRVTGQDTGVYGWD 185
Query: 142 IGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPV 199
G +LP LL+ I +G +R+GM NP I +E+A+V R+ +Y+F+H PV
Sbjct: 186 DGERDLPELLDRICN---IEGEFRVRLGMANPGGIHGIREELADVFARNEKLYTFIHAPV 242
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGS+ VL M R++ + F +++T + ++TD I GFP ETD D Q++ L +
Sbjct: 243 QSGSNEVLEEMRRQHRVDKFLEIIETFDTKLDHWTLSTDFIVGFPTETDADHEQSMALFR 302
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGRV 314
E + +V+I++F RPGT AA MK + K RS+ ++ V EA+ +G V
Sbjct: 303 ETRPEKVNITRFSKRPGTDAAEMKGLGGQTKKDRSKAMSELKHEIVAEAYEELIGTTREV 362
Query: 315 ERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKITSVGRWSVFG 366
+ + E D + Y Q++V +T + L ++ +V+G
Sbjct: 363 --LVVEEGTGDSVKC--RDSAYRQLIVQNATEHDLEPGEFAEVEVTSHQTVYG 411
>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
Length = 455
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 155/294 (52%), Gaps = 16/294 (5%)
Query: 10 SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL----H 62
S K+ + + GC+ Q G + +++ V +V G + + ++ +G R+
Sbjct: 80 SGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGENDRVAVDISE 139
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
K + DLP R ++ +PI GC CTYC + RG S T E+++G ++A
Sbjct: 140 EGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEAVIGECERLVA 199
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
DGV+E+ L ++ +YGRD+ LL A+ G +R +NP + + +
Sbjct: 200 DGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSSNPKDLTD--E 253
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+ VQSGS VL MNR YT ++ VV L +PG+ ++TDII
Sbjct: 254 TIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVVSRLRAAIPGLALSTDII 313
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
GFPGET+EDF +T++L+KE + + + RPGTPAA+ + P V+++R
Sbjct: 314 VGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYEDNTPHEVIQER 367
>gi|399577306|ref|ZP_10771059.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
gi|399237689|gb|EJN58620.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
Length = 416
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 161/297 (54%), Gaps = 11/297 (3%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRIDSPSVEENVRKARALVHAGAKELRITGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHV 197
D G LP LL+ I +G +R+GM NP I +E+ EV + +Y+F+H+
Sbjct: 184 WDKGDRKLPELLDRIC---DIEGDFRVRVGMANPGGIHGIQEELVEVFAANEKLYNFIHL 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + F +V+ + + ++TD I GFP ETDED ++ L
Sbjct: 241 PVQSGSDDVLEDMRRQHRVDKFLDIVEVFDDRLDYWTLSTDFIVGFPTETDEDHAMSMAL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT--PYLGMEGRVE 315
+KE + ++++++F RPGT AA MK + + K+RS+E++S Y M G +
Sbjct: 301 MKEVRPEKINVTRFSKRPGTDAADMKGLGGTLKKERSKEMSSAKMDIVADAYESMVGTTQ 360
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + E G + Y Q++V + G G V++TS FG+ +
Sbjct: 361 NVLVVE-EGTGDSVKCRDGAYRQIIVQNASEHGVEPGDFLDVEVTSHQTVYAFGKPV 416
>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
Length = 429
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 201/386 (52%), Gaps = 30/386 (7%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEV 58
+ I + + K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG +
Sbjct: 58 STIGELRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKA 114
Query: 59 RLLHRKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ KL +D + R +K + I GC CTYC + RG S +E ++
Sbjct: 115 AIFD-DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQE 173
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP 173
V+ + +GV+E+ ++ AYG+D+ G +L LLN + + RI +T+ P
Sbjct: 174 VKNLSLNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYP 228
Query: 174 --FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
F L+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP
Sbjct: 229 TDFSLDIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVP 285
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAV 289
I++DII GFP ET++DF QTV L+KE KF +++++ + PR GT A + VP AV
Sbjct: 286 DASISSDIIVGFPDETEDDFQQTVKLVKEIKFERLNLAIYSPREGTIAWKYFEDNVPHAV 345
Query: 290 VKKRSRELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+R L ++ + L ++ VE I + E A G+ + + + +
Sbjct: 346 KTRRMAYLLNLQKEVNKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKI-IAFEGDES 403
Query: 347 MLGTSALVKITSVGRWSVFGEVIKIL 372
++G LVKI ++G++IKI+
Sbjct: 404 LIGKKILVKIKKTTAGPLYGDIIKII 429
>gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125]
gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125]
Length = 448
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 193/381 (50%), Gaps = 22/381 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++E +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEVMAIPGVDIVVGTQDRKKMLEYIEQYKKERQPINGVGNIMKSRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIKQAEQLVQAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ +L LL + +G +RI + + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDLKDYSLARLLEDLEQ---VNGLKRIRISSIEASQLTDEVIEVID-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT++ F ++ L E +PG+ + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + R GTPAARM+ +V V +R L + +
Sbjct: 307 TEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVHRLIQLSDQLA 366
Query: 306 PYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V + E + G++ VG+T Y++V +P+T M+G VKIT
Sbjct: 367 KEYASQFEGEVLEMIPEERDKEEPNSGLY-VGYTDNYLKVKIPATDEMIGKLVKVKITKA 425
Query: 360 GRWSVFGEVIKILNQVDDKIA 380
G GE +++L++ +A
Sbjct: 426 GYPYNEGEFVRVLDEEPQAVA 446
>gi|429727800|ref|ZP_19262556.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
gi|429151534|gb|EKX94398.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
Length = 442
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 34/380 (8%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ K + V GC Q S ++ E+E V++V G +V+ +EE L
Sbjct: 65 KKKNPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNS 116
Query: 65 KLPALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESL 113
KL +D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 117 KLSTVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDDI 176
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 177 REEITTLAKNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPV 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + +
Sbjct: 236 LFTDEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
+ TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V +
Sbjct: 294 MLTTDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQF 353
Query: 293 RSRELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
RS L ++ F+ T Y+ GR + E+ +G + G + Y+++ V S ++
Sbjct: 354 RSDALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEG-YYEGLSDNYIRIKVKSDKDI 409
Query: 348 LGTSALVKITSVGRWSVFGE 367
G KI + GE
Sbjct: 410 RGQILEAKIVDIRDDYCIGE 429
>gi|398311484|ref|ZP_10514958.1| hypothetical protein BmojR_19315 [Bacillus mojavensis RO-H-1]
Length = 451
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 196/389 (50%), Gaps = 26/389 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL + A + G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLRELDARV--QGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE +F ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWI------TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+ E + I E + ++ VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASDYENEVLEIIPEEAFKESDEENMY-VGYTDNYMKVVFKGTEDMIGKIVKVKILK 425
Query: 359 VGRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D I R+SS
Sbjct: 426 AGYPYNEGQFVRV---VEDDITEQMRMSS 451
>gi|354557984|ref|ZP_08977241.1| RNA modification enzyme, MiaB family [Desulfitobacterium
metallireducens DSM 15288]
gi|353549658|gb|EHC19099.1| RNA modification enzyme, MiaB family [Desulfitobacterium
metallireducens DSM 15288]
Length = 459
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 189/360 (52%), Gaps = 29/360 (8%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR-LLHR-------K 64
+VV GC Q + ++ E+EGV +V G Q +++E++E+ + + + +H +
Sbjct: 102 VVVMGCYAQTAPGEVLEIEGVDLVLGTQDRGKILELIEQVRQEQKPQSQVHTIWDAQEFE 161
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+LP ++ R L I GC CTYC +ARG + S E+++ + +++ G
Sbjct: 162 ELPLMEGESRTRA----TLKIQDGCNKFCTYCIIPYARGPVRSRKHENVIAEAKKLVSAG 217
Query: 125 VKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
KE+ L+ TG+YG D G NL L+ + +P G + LR+ T P +E E+
Sbjct: 218 YKEIVLTGIHTGSYGEDSGEDWNLARLVKELT-NIP--GLSRLRLSSTEP---MEFTPEL 271
Query: 183 AEV-LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
EV L V S LH+P+Q GSD +LS M R YT +F+ ++D + +PG+ I TD+I
Sbjct: 272 IEVILSSSGVCSHLHIPLQCGSDTILSRMKRPYTTQEFKNLIDEFNQKLPGIAITTDVIV 331
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET++DF ++ ++ F VH+ + R GTPAA+ + V ++R + L V
Sbjct: 332 GFPGETEQDFQDSLEFVRSCHFAGVHVFPYSKRKGTPAAKYSDHLTKKVKEQRVKALMEV 391
Query: 301 F-EAFTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKI 356
++ Y+ G+ + I + DG GHT+ Y+QV +P S G + LV+
Sbjct: 392 AQQSHEDYVEKCVGQTLEVLIERVGEDGT-ATGHTRNYIQVKLPPRSDGKAWESGELVEF 450
>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-23m63]
gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
Length = 432
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 188/378 (49%), Gaps = 31/378 (8%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 65 KKKNPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD-- 122
Query: 65 KLPALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V
Sbjct: 123 -----DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIV 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V+ + +G KEV L+ +YG+D+ LL+ I + +R+ P
Sbjct: 178 DEVKKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINKIEKIERIRLSSVEPIL 237
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + EVL+ V H+ +QSG D L MNR YT +++T+VD L +P +
Sbjct: 238 FTDEF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVA 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TD+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + R
Sbjct: 296 ITTDVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFR 355
Query: 294 SRELTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S +L ++ F F T ++G + V + E +G G T Y++V+V S N+
Sbjct: 356 SEQLLNLSKVNFNKFATKFIGRKLDV----LFEQNLEGNKYEGLTSNYIRVVVESDKNIQ 411
Query: 349 GTSALVKITSVGRWSVFG 366
G VKI V V G
Sbjct: 412 GQILKVKINDVKDEYVEG 429
>gi|295706646|ref|YP_003599721.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
megaterium DSM 319]
gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
DSM 319]
Length = 452
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 29/380 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGVGNIMKTRIYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + +V + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL LL + +++ G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQITDEVIEVLDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ I +D+I G
Sbjct: 250 EMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPGLAITSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V +R L +
Sbjct: 304 FPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKNQRVHRLIELS 363
Query: 302 EAFTPYLG--MEGRVERIW----ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
EG V + E G++ VG+T Y++V+ ++ M+G VK
Sbjct: 364 NQLAKEYASTFEGEVLEVIPEEKYKEDPESGLY-VGYTDNYLKVVFKASEEMVGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQV 375
I+ G GE +++L++V
Sbjct: 423 ISKAGYPYNEGEFVRVLDEV 442
>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
Length = 417
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 11/273 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S ++ V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ +G +R+GM NP + +E+A+V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLEEICEI--EGDFRVRVGMANPKGVHGIREELADVFAEYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYLEVVETFDSALDYWTLSTDFIVGFPTETDHDHAQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA +K + + K+RS+E++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREIVADAYADMVG-ETR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + + + AD + Y Q++V + +
Sbjct: 361 EDVLVVEDGTADSVKC--RDSAYRQIIVQNASD 391
>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
violaceus PCC 7421]
gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
Length = 441
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 23/365 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-D 70
LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +G +V + + + L D
Sbjct: 84 LVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAEGEQV--VATEPIEILED 141
Query: 71 LPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ K RR+ V I GC CTYC RG S T E++ + + A G KEV
Sbjct: 142 ITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEAIKAEICELGASGYKEVT 201
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYGRDIG NL LL + P G LR ++P + + L IA P
Sbjct: 202 LLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHPRYFSDEL--IATCAELP 256
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V H+P QSG + VL M R YT +R +++ + ++P I+ D+I GFPGET+
Sbjct: 257 KVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPDAAISADLIVGFPGETEA 316
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS------VFEA 303
F ++ L+ E +F ++ + + PRPGTPAAR VK+ + T+ FE
Sbjct: 317 QFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQDRLQRTNRLVAQKAFER 376
Query: 304 FTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGR 361
YL GR E++ + E D +VG T+ V + G V+IT+
Sbjct: 377 SQRYL---GRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGELAKLRGQLVDVQITAARA 433
Query: 362 WSVFG 366
+S+ G
Sbjct: 434 FSLTG 438
>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
Length = 420
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 153/273 (56%), Gaps = 11/273 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +E V + ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + EL +G +R+GM NP + +E+A V + +Y FLH P
Sbjct: 184 WDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASVFAEYDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYLEVVETFDDQLDYWTLSTDFIVGFPTETDRDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA+MK + + K+RS+E+++ V EA+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAKMKGLGGTIKKERSKEMSAAKRELVGEAYESMVG-EVR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + + AD + Y Q++V + +
Sbjct: 361 EDVLVVEHGTADSVKC--RDSAYRQLIVQNASD 391
>gi|336234636|ref|YP_004587252.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335361491|gb|AEH47171.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
Length = 451
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 24/386 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q +++E VE+ + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + + ++ G KE+
Sbjct: 135 DVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQAQQLVNAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG D+ N LL + ++ G LRI I + E+ +VLR
Sbjct: 194 LTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQITD---EVIDVLRR 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+ VL M R+YT F + L E+ P + I +D+I GFPGET
Sbjct: 249 SDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAITSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T N ++E +F ++H+ + R GTPAARM +V V R R L ++ +
Sbjct: 309 EEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEEVKHDRVRRLIALSDQLAK 368
Query: 307 YLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
EG+V + E + + +G+T Y++V P+T M+G VKIT G
Sbjct: 369 EYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVGEIVKVKITKAGY 428
Query: 362 WSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D I + ++SS
Sbjct: 429 PYNEGEFVRV---VADDIPQSVKLSS 451
>gi|339010557|ref|ZP_08643127.1| putative methylthiotransferase YqeV [Brevibacillus laterosporus LMG
15441]
gi|421873924|ref|ZP_16305533.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
gi|338772712|gb|EGP32245.1| putative methylthiotransferase YqeV [Brevibacillus laterosporus LMG
15441]
gi|372457035|emb|CCF15082.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
Length = 453
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 196/379 (51%), Gaps = 28/379 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV------RLLHRKKL 66
+ V GC Q S +++ E+ GV IV G Q DR++E V + ++G ++ ++
Sbjct: 74 VAVTGCYAQTSPKEIAEIPGVDIVVGTQGRDRLLEYVAQ-IRGERTPINAVGNIMKTREF 132
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
LD+P ++ L I GC CT+C ARG + S ES++ + ++A+G
Sbjct: 133 EELDVPNFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRKPESVIEQAEKLVAEGYL 191
Query: 127 EVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 184
E+ L+ TG YG D+ NL LL EL +G +RI I + + +A
Sbjct: 192 EIVLTGIHTGGYGEDLEDYNLAKLL----VELEKVEGLKRIRISSIEASQITDEV--VAV 245
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ R + LHVP+Q+G DAVL M R+YT ++F + + + +PG+ I TD+I GFP
Sbjct: 246 IDRSEKICRHLHVPLQAGDDAVLKRMRRKYTTAEFMERIHKVRKALPGVAITTDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 303
GET+E F N IKE F ++H+ + R GTPAARM+ +V V K+R +L + +
Sbjct: 306 GETEEQFVAGYNFIKELGFAELHVFPYSMRTGTPAARMEDQVDEEVKKERVAKLIELNQQ 365
Query: 304 FT-----PYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ P++G +E ER + E G+ L+G++ Y+ V+ T +M+G V++
Sbjct: 366 LSVEYAQPFIGDVLEIIPERPY-KEDPTSGM-LMGYSDNYLNVVFEGTEDMIGKICKVRL 423
Query: 357 TSVGRWSVFGEVIKILNQV 375
V G ++++ +
Sbjct: 424 DEVDAEYCKGTFVRVIESL 442
>gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|384044855|ref|YP_005492872.1| methylthiotransferase yqeV [Bacillus megaterium WSH-002]
gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|345442546|gb|AEN87563.1| Putative methylthiotransferase yqeV [Bacillus megaterium WSH-002]
Length = 452
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 29/380 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGVGNIMKTRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + +V + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL LL + +++ G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQITDEVIEVLDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ I +D+I G
Sbjct: 250 EMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPGLAITSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V +R L +
Sbjct: 304 FPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKNERVHRLIELS 363
Query: 302 EAFTPYLG--MEGRVERIW----ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
EG V + E G++ VG+T Y++V+ ++ M+G VK
Sbjct: 364 NQLAKEYASTFEGEVLEVIPEEKYKEDPESGLY-VGYTDNYLKVVFKASEEMVGKLVKVK 422
Query: 356 ITSVGRWSVFGEVIKILNQV 375
I+ G GE +++L++V
Sbjct: 423 ISKAGYPYNEGEFVRVLDEV 442
>gi|126652827|ref|ZP_01724972.1| Fe-S oxidoreductase [Bacillus sp. B14905]
gi|126590363|gb|EAZ84483.1| Fe-S oxidoreductase [Bacillus sp. B14905]
Length = 449
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 22/377 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +++ + VR ++ +
Sbjct: 78 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGYIDQYRAERQPINAVRNIMKNRVYE 137
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G E
Sbjct: 138 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQAQQLVDAGYLE 196
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + A + G LRI + + E+ +VL
Sbjct: 197 IVLTGIHTGGYGQDLKDYNLAQLLRDLEANVK--GLKRLRISSIEASQLTD---EVIDVL 251
Query: 187 RHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R V + LH+P+QSGSD VL M R+YT+ F + L E +P + + +D+I GFPG
Sbjct: 252 RESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVTSDVIVGFPG 311
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F T N I+++KF ++H+ F PR GTPAARM+ ++ + +R L S+ +
Sbjct: 312 ETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVHRLISLNDQL 371
Query: 305 TPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E +V + E DG L G+T Y++V+ +++G VKIT
Sbjct: 372 AKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPESLIGQLVKVKITQ 431
Query: 359 VGRWSVFGEVIKILNQV 375
G G+ +++L V
Sbjct: 432 AGYPHSQGQFVRVLETV 448
>gi|407978464|ref|ZP_11159295.1| 2-methylthioadenine synthetase [Bacillus sp. HYC-10]
gi|407415022|gb|EKF36638.1| 2-methylthioadenine synthetase [Bacillus sp. HYC-10]
Length = 452
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 190/380 (50%), Gaps = 28/380 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +EE + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEYRRERQPINGVGNIMKARVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + G +RI I + + E+ +
Sbjct: 192 IVLTGIHTGGYGEDLKDYNFAKLLKELDERVA--GLKRIRISSIEASQITDEVIEVLDQS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG+ + +D+I G
Sbjct: 250 DKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPGLAVTSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V +R L ++
Sbjct: 304 FPGETEEEFMETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALS 363
Query: 302 EAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E DG H VG+T Y++V+ T +M+G VK
Sbjct: 364 DQLAKEYASAYEGDVLEIIPEESFKEQDGKHNLYVGYTDNYMKVVFEGTEDMIGRLVKVK 423
Query: 356 ITSVGRWSVFGEVIKILNQV 375
IT G G+ ++I + V
Sbjct: 424 ITKAGYPYNEGQFVRISDDV 443
>gi|312110172|ref|YP_003988488.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|423719206|ref|ZP_17693388.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|383368109|gb|EID45384.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 451
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 24/386 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q +++E VE+ + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAVHNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + + ++ G KE+
Sbjct: 135 DVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQAQQLVNAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG D+ N LL + ++ G LRI I + E+ +VLR
Sbjct: 194 LTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQITD---EVIDVLRR 248
Query: 189 P-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+ VL M R+YT F + L E+ P + I +D+I GFPGET
Sbjct: 249 SDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAITSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T N ++E +F ++H+ + R GTPAARM +V V R R L ++ +
Sbjct: 309 EEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEDVKHDRVRRLIALSDQLAK 368
Query: 307 YLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
EG+V + E + + +G+T Y++V P+T M+G VKIT G
Sbjct: 369 EYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVGEIVKVKITKAGY 428
Query: 362 WSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D I + ++SS
Sbjct: 429 PYNEGEFVRV---VADDIPQSVKLSS 451
>gi|239637612|ref|ZP_04678584.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596830|gb|EEQ79355.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 448
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 17/373 (4%)
Query: 17 VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q ++++ ++E K + ++ +K L
Sbjct: 75 VTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLDYIDEFQKERQPINGVGNIMKNRKYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S E +V + T++ G KE+
Sbjct: 135 DVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATTLVNAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG+D+ NL LL + DG +RI + + + ++ E R
Sbjct: 194 LTGIHTGGYGQDLKNYNLAQLLRDLDQ---VDGLERIRISSIEASQLTDEVIDVLE--RS 248
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
+ LHVP+QSGSD VL M R+YT+ F + L E +P + I +D+I GFPGET+
Sbjct: 249 NKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPDVAITSDVIVGFPGETE 308
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPY 307
E+F +T + I +++F ++H+ + R GTPAARM ++ + +R +L ++ +
Sbjct: 309 EEFQETYDFIVKHQFSELHVFPYSSRIGTPAARMDNQIDEDIKNERVHKLIALSDQLAKE 368
Query: 308 LG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
E V + E LVG+ Y++V T +++G VKI +
Sbjct: 369 YASKFENEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGTEDLIGQIIKVKIQKADYPLNY 428
Query: 366 GEVIKILNQVDDK 378
G+ I+I+ +K
Sbjct: 429 GKAIRIVEHATNK 441
>gi|417643114|ref|ZP_12293176.1| tRNA methylthiotransferase YqeV [Staphylococcus warneri VCU121]
gi|445059524|ref|YP_007384928.1| hypothetical protein A284_05835 [Staphylococcus warneri SG1]
gi|330686099|gb|EGG97720.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU121]
gi|443425581|gb|AGC90484.1| hypothetical protein A284_05835 [Staphylococcus warneri SG1]
Length = 448
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 17/373 (4%)
Query: 17 VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q ++++ ++E K + ++ +K L
Sbjct: 75 VTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLDYIDEFQKERQPINGVGNIMKNRKYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S E +V + T++ G KE+
Sbjct: 135 DVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATTLVNAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG+D+ NL LL + DG +RI + + + ++ E R
Sbjct: 194 LTGIHTGGYGQDLKNYNLAQLLRDLDQ---VDGLERIRISSIEASQLTDEVIDVLE--RS 248
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
+ LHVP+QSGSD VL M R+YT+ F + L E +P + I +D+I GFPGET+
Sbjct: 249 NKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPDVAITSDVIVGFPGETE 308
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPY 307
E+F +T + I ++KF ++H+ + R GTPAARM ++ + +R +L ++ +
Sbjct: 309 EEFQETYDFIVKHKFSELHVFPYSSRIGTPAARMDDQIDEEIKNERVHKLIALSDQLAKE 368
Query: 308 LG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
E V + E LVG+ Y++V + +++G VKI +
Sbjct: 369 YASKFEDEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGSEDLIGQIIKVKIQKADYPLNY 428
Query: 366 GEVIKILNQVDDK 378
G+ I+I+ +K
Sbjct: 429 GKAIRIVEHATNK 441
>gi|336253288|ref|YP_004596395.1| MiaB-like tRNA modifying protein [Halopiger xanaduensis SH-6]
gi|335337277|gb|AEH36516.1| MiaB-like tRNA modifying enzyme [Halopiger xanaduensis SH-6]
Length = 417
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 154/273 (56%), Gaps = 11/273 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S VE V + R +I G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKEATGKIDSPPVEENVEKARALIHAGAKEIRITGQDTGVYG 183
Query: 140 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVP 198
D G L + E+ +G +R+GM NP + +E+AEV H +Y FLH P
Sbjct: 184 WDTGERKLHELLERICEI--EGDFRVRVGMANPKGVHGIREELAEVFAEHDELYDFLHAP 241
Query: 199 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258
VQSGSD VL M R++ + ++ VV+T + + ++TD I GFP ET+ D Q++ L+
Sbjct: 242 VQSGSDDVLGDMRRQHQVEEYVEVVETFDDRLDYWTLSTDFIVGFPTETEHDHEQSMALL 301
Query: 259 KEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGR 313
+E + ++++++F RPGT AA MK + V K+RS+E++ V +A+ +G E R
Sbjct: 302 RETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSELKREIVADAYEDMVG-ERR 360
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ + + E AD + Y Q++V + +
Sbjct: 361 EDCLVVEEGTADSVKC--RDSAYRQIIVQNASD 391
>gi|169829242|ref|YP_001699400.1| hypothetical protein Bsph_3790 [Lysinibacillus sphaericus C3-41]
gi|168993730|gb|ACA41270.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
Length = 432
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 22/377 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +++ + VR ++ +
Sbjct: 61 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGYIDQYRAERQPINAVRNIMKNRVYE 120
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G E
Sbjct: 121 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQAQQLVDAGYLE 179
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + A + G LRI + + E+ +VL
Sbjct: 180 IVLTGIHTGGYGQDLKDYNLAQLLRDLEANVT--GLKRLRISSIEASQLTD---EVIDVL 234
Query: 187 RHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R V + LH+P+QSGSD VL M R+YT+ F + L E +P + + +D+I GFPG
Sbjct: 235 RESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVTSDVIVGFPG 294
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F T N I+++KF ++H+ F PR GTPAARM+ ++ + +R L S+ +
Sbjct: 295 ETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVHRLISLNDQL 354
Query: 305 TPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E +V + E DG L G+T Y++V+ +++G VKIT
Sbjct: 355 AKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPESLIGQLVKVKITQ 414
Query: 359 VGRWSVFGEVIKILNQV 375
G G+ +++L V
Sbjct: 415 AGYPHSQGQFVRVLETV 431
>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 442
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 34/380 (8%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ K + V GC Q S ++ E+E V++V G +V+ +EE L
Sbjct: 65 KKKNPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNS 116
Query: 65 KLPALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESL 113
KL +D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 117 KLSTVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDEI 176
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 177 REEIITLANNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPV 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + +
Sbjct: 236 LFTDEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
+ TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V +
Sbjct: 294 MLTTDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQF 353
Query: 293 RSRELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
RS L ++ F+ T Y+ GR + E+ +G + G + Y+++ V S ++
Sbjct: 354 RSDALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEG-YYEGLSDNYIRIKVKSDKDI 409
Query: 348 LGTSALVKITSVGRWSVFGE 367
G KI + GE
Sbjct: 410 RGQILEAKIVDIRDDYCIGE 429
>gi|157693043|ref|YP_001487505.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
gi|157681801|gb|ABV62945.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 453
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 195/385 (50%), Gaps = 29/385 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ +EE + + ++ +
Sbjct: 74 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEFRRERQPINGVGNIMKARVFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 134 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQAQQLVDAGYKE 192
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ N LL + + +G +RI I + + E+ +
Sbjct: 193 IVLTGIHTGGYGEDLKDYNFAKLLKELDERV--NGLKRIRISSIEASQITDEVIEVLDQS 250
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG+ + +D+I G
Sbjct: 251 DKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPGLAVTSDVIVG 304
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V +R L ++
Sbjct: 305 FPGETEEEFLETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALS 364
Query: 302 EAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EG V I E +G H VG+T Y++V+ T +M+G VK
Sbjct: 365 DQLAKEYASAYEGDVLEIIPEESFKEQEGKHNLYVGYTDNYMKVVFEGTEDMIGRLVKVK 424
Query: 356 ITSVGRWSVFGEVIKILNQVD-DKI 379
IT G G+ ++I ++V DK+
Sbjct: 425 ITKAGYPYNEGQFVRISDEVQTDKV 449
>gi|425737412|ref|ZP_18855685.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
gi|425482760|gb|EKU49916.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
Length = 448
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 199/393 (50%), Gaps = 29/393 (7%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV IV G + R+++ +E K E ++
Sbjct: 67 KNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTEGRSRLLDYIETYRKEREPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L++P ++ L I GC CT+C ARG + S E +V + T++
Sbjct: 127 KNRTYEELEVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATTLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----IL 176
G KE+ L+ TG YG+D+ NL LL + DG +RI ++
Sbjct: 186 NSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---VDGLERIRISSIEASQLTDEVI 242
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E L++ +V+RH LHVP+QSGSD+VL M R+Y+++ F + L E +PG+ +
Sbjct: 243 EVLQQSTKVVRH------LHVPLQSGSDSVLKRMRRKYSMAHFSERLTKLHEALPGLAVT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGET+E+F QT + I ++ F ++H+ + PR GTPAARM +V V +R
Sbjct: 297 SDVIVGFPGETEEEFQQTYDFIVDHHFSELHVFPYSPRIGTPAARMDDQVDEEVKNERVH 356
Query: 296 ELTSVFEAFTPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
L ++ + +E I + + DGI LVG+ Y++V +++G
Sbjct: 357 RLINLSNQLAKQYASKFDQDVLEVIPEEKGSHDGI-LVGYADNYMKVEFDGDESLIGELV 415
Query: 353 LVKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G++++++ ++ SN+ +
Sbjct: 416 KVKITEPNYPINKGQLLRVVEHATNQ--SNKEV 446
>gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1]
gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens
MI-1]
Length = 436
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 180/369 (48%), Gaps = 20/369 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +VG + R+V++VE +G ++
Sbjct: 74 ITVTGCYAQTSPGEVLEIPGVDLVVGTKDKSRIVQLVEAYSRGKGPVNAVDDIMQTDCFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L +P + K L I GC C YC +ARG + S E+++ +I G +E
Sbjct: 134 ELPVP-TEQGKTRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVLSSAEELIQQGFQE 192
Query: 128 VWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+ L+ GAYG+D ++L L+ + A+LP G T LR+G P I L I
Sbjct: 193 IVLTGIHIGAYGQDFTGKDIDLGWLVERL-AKLP--GLTRLRLGSVEPHDINNAL--IKA 247
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V HP V LH+P+QSG D +L+ M R Y F ++ + +++PG+ I +DII GFP
Sbjct: 248 VSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIHKINQIMPGIAITSDIIVGFP 307
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET E F T+ ++ F +H+ ++ PR GTPAA M +V ++RS+ L +
Sbjct: 308 GETQEHFQNTLKTVERSGFAGIHVFKYSPRKGTPAAEMTDQVAPQDKEERSKSLIELGNR 367
Query: 304 FTPYLGME--GRVERIWITE-IAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ G+ ++ + + D L GHT Y++VL P + G V I V
Sbjct: 368 LAHQFAQQQVGKELKVLVEQPYEKDPNLLEGHTDTYLKVLFPGDTGLKGQMVRVHIQGVK 427
Query: 361 RWSVFGEVI 369
++ G +I
Sbjct: 428 ESTLKGRII 436
>gi|403252571|ref|ZP_10918880.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
gi|402812061|gb|EJX26541.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
Length = 434
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 33/370 (8%)
Query: 9 KSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
K+AK +++ GC Q S D K L I+G+ + +V+ + +L G + ++ P
Sbjct: 68 KNAK--IILTGCFAQLSPDEAKNLPVDMILGIDEKKHIVDHIN-SLNGKQQVVVSEPGRP 124
Query: 68 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD 123
+ KV+ ++ + + GC CTYC + ARG + S +E ++
Sbjct: 125 VYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMK 182
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + + EI
Sbjct: 183 GYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND---EIV 236
Query: 184 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII G
Sbjct: 237 EAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTDIIVG 296
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVVKKRS 294
FPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+K+++
Sbjct: 297 FPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLKEKA 356
Query: 295 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
++++ + +G E +V W G+ L G+ + YV+ GN +G V
Sbjct: 357 KDVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVKHEF--VGNRVGEFHSV 408
Query: 355 KITSVGRWSV 364
++ S+ V
Sbjct: 409 RVKSLSEEGV 418
>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
Length = 446
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 189/382 (49%), Gaps = 27/382 (7%)
Query: 9 KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
+ +KP LVVAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 71 RKHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATE 130
Query: 63 RKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ D+ K RR+ K + I GC C+YC + RG S T E++ + +
Sbjct: 131 PIHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIG 189
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVAELPPDGSTMLRIGMTNPPFI 175
G KE+ L ++ AYGRD+ + P L + + + +R ++P +
Sbjct: 190 KQGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYF 249
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
E L + + L P V H+P QSG + +L AM R YT +R ++D + +P I
Sbjct: 250 TERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHEKYRRIIDKIRHYMPDAAI 307
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK---- 291
+ D I GFPGET+E FN T+ L+++ F ++ + + PRPGTPAA + S VK
Sbjct: 308 SADAIVGFPGETEEQFNNTLKLVEDIGFDLINTAAYSPRPGTPAALWEDQLSEEVKSDRL 367
Query: 292 KRSREL--TSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVP-STGNM 347
+R L T+ E YL RVE + + + D ++G T+G P N+
Sbjct: 368 QRLNHLVATTAAERSQRYL---NRVEEVLVEAQNTKDTAQVMGRTRGNRLTFFPGKIENL 424
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
LG + VKIT +S+ GE+I
Sbjct: 425 LGKTVKVKITEYRAFSLTGEMI 446
>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
Length = 436
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 185/376 (49%), Gaps = 33/376 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
+ V GC PQ S ++ E++GV IVG + R+V++VE+ + E R A D
Sbjct: 73 VAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNFVRDISEAEDFE 132
Query: 73 KVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
++ +KF E L + GC C YC + RG + S +E V + + A G KE+
Sbjct: 133 EIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEAKRLAASGFKEI 192
Query: 129 WLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ GAYG+++ ++L LL ++ G +R+ + L ++
Sbjct: 193 VLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEVTSDLIDLIATE 249
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
C + LH+P+Q+GSD +L+AMNR+YT+ + V + +P + + TD++ GFPGE
Sbjct: 250 EKLCRH--LHLPLQNGSDKILAAMNRDYTVQQYADKVAEIRSNIPQIALTTDVMVGFPGE 307
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA--------RMKKVPSAVVKKRSRELT 298
TDEDF T LI+E F +H+ ++ R GT AA ++KK SA ++K + +L
Sbjct: 308 TDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQVHSKLKKERSAKLRKLADDLA 367
Query: 299 SVFEAFTPYLGMEGRV----ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
S + +LG E V ER T++ L G T Y++V++ V
Sbjct: 368 SQYR--KKFLGAELDVLIEEERDGSTDL------LTGLTDNYLRVMIDDQDQYRKELIEV 419
Query: 355 KITSVGRWSVFGEVIK 370
++ + + G++ K
Sbjct: 420 ELNKLQEDYLIGKITK 435
>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
Length = 439
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 191/372 (51%), Gaps = 30/372 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-----------EVRLL 61
+ V GC Q +++ LEGV +V G ++ R+V+ VEE L+ + R+
Sbjct: 79 IAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGAIGTITDIMQARVF 138
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P LP R L I GC CT+C +ARG + S + ++ ++ +
Sbjct: 139 --EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVAREMKLLT 192
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ + P L +A L + LR+G +E E
Sbjct: 193 EAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLGSLES---VELSAE 248
Query: 182 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ E++R P + LH+P+Q+GSD VL AMNR Y + F T+++ + VPG+ I+TDII
Sbjct: 249 LLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFATLLEDVRRAVPGVAISTDII 308
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF ++ ++ F ++H+ + PR GTPAAR +V V K+R+ + +
Sbjct: 309 VGFPGETEEDFAAGLDFVRAMGFARMHVFPYSPRKGTPAARRSDQVLPMVRKERAARMQA 368
Query: 300 VFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ + + G V + E +ADG+ G T+ Y++V + G A +++T
Sbjct: 369 LADELAEEYHRAALGSVADVLF-ETSADGV-TDGLTETYIRVYTDAPVTR-GEIAPLRLT 425
Query: 358 SVGRWSVFGEVI 369
+ R V+GE I
Sbjct: 426 HLYRDGVWGEPI 437
>gi|431794904|ref|YP_007221809.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785130|gb|AGA70413.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 454
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 183/340 (53%), Gaps = 19/340 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR-----LLHRKKLP 67
+VV GC Q + ++ ++EGV +V G Q +++E +++ + + + + K+
Sbjct: 97 VVVMGCYAQTAPGEILDIEGVDLVLGTQDRGKILEWIDQVRREQQPKSSVHTIWDAKEFE 156
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L L + ++ L I GC CTYC +ARG + S E+ + ++A G KE
Sbjct: 157 ELPLIE-EESRTRATLKIQEGCNKFCTYCIIPYARGPVRSRIPENALSEAEKLVAAGYKE 215
Query: 128 VWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+ L+ TG+YG D+G NL L+ I G LR+ P L EI +
Sbjct: 216 IVLTGIHTGSYGEDLGEDWNLARLVKEIAQ---VKGLHRLRLSSIEPMEFTPELIEI--I 270
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ P V LH+P+Q GSDA+L+ M R YT+S+F+ ++ L L+PG+ I TD+I GFPG
Sbjct: 271 ITTPTVCPHLHIPLQCGSDAILTRMKRPYTVSEFKELIHRLQGLLPGIAITTDVIVGFPG 330
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-EA 303
ET+E+F +++ ++ F VH+ + R GTPAA+ ++ + + ++R ++L V E+
Sbjct: 331 ETEENFQESLETVRSCGFSGVHVFPYSKRKGTPAAKYPDQLSNKIKEQRVKDLMKVAKES 390
Query: 304 FTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
Y+ G+ + + + ++GI GHT+ Y+QV +P
Sbjct: 391 HEEYVNQFLGQAIEVLVEWVNSEGI-ATGHTRNYLQVHLP 429
>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 432
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 180/358 (50%), Gaps = 28/358 (7%)
Query: 15 LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLL-------HRK 64
+V GC Q S D + + GV IVG Q R+V++VEE + +V + +
Sbjct: 73 IVATGCYAQVSPDKVAAIPGVDVIVGTQDRGRIVDLVEEARRTRGQVNAVTDIMEAEQFE 132
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+P D P R L I GC CTYC +ARG L S +++S+ +IA G
Sbjct: 133 DIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLDSVKREAEKLIATG 188
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
KE+ L+ GAYGRD+G L L +A+ L G LR+ + + L +A
Sbjct: 189 FKEIVLTGIHLGAYGRDMGDGLE-LADAVETVLSVAGLVRLRLSSLESVEVSDRL--VAL 245
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ R + LH+P+Q+G D VLS MNR YT ++ +V + VP + + TD+I GFP
Sbjct: 246 MRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSRLVGDIRRRVPDLAVTTDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE- 302
GET F ++ ++ F +VHI + R GTPAA +VP K+R RE+ V E
Sbjct: 306 GETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAATYPNQVPEEEKKRRVREMQRVAEK 365
Query: 303 ---AF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
AF ++G E V + E A DG+ L G T Y++V +++GT +V++
Sbjct: 366 GAAAFLAAFVGREMEV----LFETANDGV-LDGLTGNYIRVYTRGGVDLVGTLGVVRL 418
>gi|410995108|gb|AFV96573.1| hypothetical protein B649_01295 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 432
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 182/373 (48%), Gaps = 19/373 (5%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K A + V GC G +K V+ V G + + ++ +V+ K E+ + +
Sbjct: 68 KLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-KAVEIEIDYD 126
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
+ A R + + + I++GC CT+C RG S + +V R +
Sbjct: 127 ESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEARKAVDS 184
Query: 124 GVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
G KEV+L ++ YGR + +N LL + A + RI T+P +
Sbjct: 185 GAKEVFLLGQNVNNYGRRLSGGNEKINFTELLRRVSA-----VEGLERIRFTSPHPLHMD 239
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ I E R+P + +H+P+QSGS +L AM R YT F L ELVP + I+TD
Sbjct: 240 DEFIEEFARNPKICKSMHMPLQSGSTEILKAMKRGYTKDWFLNRARKLRELVPNVSISTD 299
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
II FPGE+DEDF +T+ ++ + +F Q+ ++ PRP T A +M +V S V +R L
Sbjct: 300 IIVAFPGESDEDFEETMEVLNQVRFEQLFSFKYSPRPLTEAEKMAEVDSEVGSERLSRLQ 359
Query: 299 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ + + + G++ ++ E+ +G ++ G + + V V + MLGT A VKI
Sbjct: 360 ARHDEILDEMKLVNLGKIVEVYFEEL-REGGYVAGRSDNNLGVKVKGSEEMLGTIASVKI 418
Query: 357 TSVGRWSVFGEVI 369
T V R +GE+I
Sbjct: 419 TEVSRNVQYGEII 431
>gi|302389477|ref|YP_003825298.1| MiaB family RNA modification protein [Thermosediminibacter oceani
DSM 16646]
gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
DSM 16646]
Length = 441
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 185/381 (48%), Gaps = 25/381 (6%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
A ++ + + V GC Q + ++ + GV +V G + ++V++VE+ K +E
Sbjct: 71 AARRNPEATIAVVGCYAQLEAEEVSRIPGVDVVVGTKDRHKIVDLVEQAGKNNE------ 124
Query: 64 KKLPALDLPKVR----------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 113
K + D+ + R R + L I GC C+YC + RG + S T+ES+
Sbjct: 125 KIIEVEDIMQTRNFEEIAFRGHRQRTRAFLKIQEGCNMFCSYCIIPYVRGPVRSRTLESI 184
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
+ + DG KE+ L+ G YG D P L + I +G +R+
Sbjct: 185 IREAENLAGDGFKEIVLTGIHLGLYGADFKGG-PTLYDVIERLSRIEGIKRIRLSSIEAM 243
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
+ + L + L + C + H+P+QSGSD +L MNR YT ++F + + +++P +
Sbjct: 244 ELSDDLIKKLASLDNFCHH--FHIPLQSGSDRILKLMNRRYTTAEFEERLRFIRDIMPDV 301
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGETDEDF T I+ F ++H+ +F PR GTPAA M ++P V +
Sbjct: 302 GITTDVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTPAAEMPDQIPGPVKES 361
Query: 293 RSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
RSREL + G+ G+V + E G++ G T Y++V V S ++
Sbjct: 362 RSRELIRLSRRLERDFRDGLTGKVLDVLFEERDNRGLYH-GLTDNYIRVAVWSDQDLHNR 420
Query: 351 SALVKITSVGRWSVFGEVIKI 371
V++ +FGE+ K
Sbjct: 421 LLPVRLIENRDEYIFGEIKKF 441
>gi|398307002|ref|ZP_10510588.1| hypothetical protein BvalD_16567 [Bacillus vallismortis DV1-F-3]
Length = 451
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 195/388 (50%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ + LL + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYSFAKLLRELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F + L + +PG+ + +D+I GFPG
Sbjct: 247 DRSNKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLHKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE++F ++H+ + R GTPAARM+ +V V +R L S+ +
Sbjct: 307 ETEEEFMETYNFIKEHQFSELHVFPYSKRTGTPAARMEGQVDENVKNERVHRLISLSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEEMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|302874325|ref|YP_003842958.1| MiaB family RNA modification protein [Clostridium cellulovorans
743B]
gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
cellulovorans 743B]
gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
743B]
Length = 433
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 175/361 (48%), Gaps = 14/361 (3%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV----- 58
AK K+ + + V GC Q S D + +EGV +V G + +V V + E
Sbjct: 63 AKKKNPEAVVAVVGCYSQTSPDEVSAIEGVDVVLGTRNKGDIVYYVNRAMDTKEKFVVVK 122
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+L K L + K L + GC C+YC +ARG + S E+++ V
Sbjct: 123 DVLRNKVFEELKIEDFE-GKTRAFLKVQDGCNRFCSYCLIPYARGAVCSKNPETIIDEVN 181
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+ +G KE+ LS +YG D+ L++ I +G +RIG P F +
Sbjct: 182 KLADNGFKEIILSGIHIASYGVDLE-ERKTLMDIIEEIHKINGIKRIRIGSVEPRFFTDE 240
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ E + C + H+ +QSG DA L MNR+YT ++ V L E +P + I TD
Sbjct: 241 VIEKMASMEKMCPH--FHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRERIPNVSITTD 298
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
+I GFPGET E+FN+T N +KE + ++HI ++ PR GT AA MK V + ++RS+ L
Sbjct: 299 VIVGFPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHGTIKEERSKLL 358
Query: 298 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ + G + + E D +G+T Y++V++ ST +++G V+
Sbjct: 359 QELDRENEKNFIQDFIGEKLEVLVEEKLKDDNRYIGYTSNYIKVIIDSTEDIVGKIITVR 418
Query: 356 I 356
+
Sbjct: 419 L 419
>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
Length = 435
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 187/382 (48%), Gaps = 41/382 (10%)
Query: 12 KKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEE--------TLKGHEVRLL 61
K + VAGC Q S ++++ +EGV IVG Q R+V++VE+ + + ++
Sbjct: 70 KAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVTNIMKAE 129
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ + +P D P R L I GC CTYC +ARG L S + S++ +I
Sbjct: 130 YFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQETEKLI 185
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A G KE+ L+ GAYGRD+ + L + + A L G LR+G I + L
Sbjct: 186 AAGFKEIVLTGIHLGAYGRDMEDEI-TLADVVRAILKIQGLVRLRLGSLESIEISDEL-- 242
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + + + S LH+P+Q+G VL AMNR YTL +++ ++ + V + I+TDII
Sbjct: 243 IALMKQDDRLCSHLHLPLQAGDATVLKAMNRHYTLGEYQQLIANIRNKVEDIAISTDIIV 302
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------RMKKVPSAV 289
GFPGET E FN + +++ F ++HI + R GTPAA R ++ +
Sbjct: 303 GFPGETPEMFNNALAFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKRRRVQIMQEL 362
Query: 290 VKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+K++ E F FT ME + +E DG+ T Y++V NM
Sbjct: 363 AEKKADEFLQSFLNRQFTVLFEMESQK-----SENIIDGL-----TGNYIRVYTSGNQNM 412
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
G S V + R V+G+++
Sbjct: 413 QGKSFQVILEKPYRDGVWGKIV 434
>gi|402829205|ref|ZP_10878081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
gi|402284186|gb|EJU32689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
Length = 454
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 181/379 (47%), Gaps = 30/379 (7%)
Query: 12 KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRK 64
K+ + + GC+ G RD + L+ V +V G Q I+R+ ++ L GH V +
Sbjct: 85 KRIVCIGGCI--GQRDGVALTETLDNVDVVFGTQNIERLPYLITGVLSQGGHFVEIEQDS 142
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ DLP R + LPI VGC CT+C + RG S T+E +V +A+G
Sbjct: 143 DSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGRERSRTIEDVVTNAEAYVAEG 202
Query: 125 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
VKE+ L ++ +YGRD+ +L A+ A G LR ++P + + + I
Sbjct: 203 VKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GVERLRFATSHPKDLTDEV--I 256
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + LH+PVQSGSD VL MNR Y + + +V L P + ++TD+I G
Sbjct: 257 AAFGELGNLMPALHLPVQSGSDRVLEDMNRTYDSAHYLGLVRKLRASCPDIALSTDVIVG 316
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV- 300
FPGET+EDF T +LI+ + QV + R GTPAA M P V+++R L +
Sbjct: 317 FPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADMFDDTPRDVIQRRFDRLVELV 376
Query: 301 ----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-----LGTS 351
E +LG + ++ ++ D LVGH+ V V P M +G
Sbjct: 377 QRKALEQNRRFLGRD--LDVLFEGPSRRDPSMLVGHSPHNVTVHAPLPAGMDASAFVGRM 434
Query: 352 ALVKITSVGRWSVFGEVIK 370
LV I W + G +++
Sbjct: 435 RLVHIDEAKTWYLSGTLVE 453
>gi|403070168|ref|ZP_10911500.1| hypothetical protein ONdio_11357 [Oceanobacillus sp. Ndiop]
Length = 449
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 189/384 (49%), Gaps = 28/384 (7%)
Query: 9 KSAKKPLVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLL 61
K+ + V GC Q S ++ E+ GV +V G Q + ++E K E ++
Sbjct: 67 KNPDAVICVTGCYAQTSPGEIMEIPGVDVVVGTQDRKNIFSYIDEHKKTKEPINGVSNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +D+P V ++ L I GC CT+C +RG L S ES++ + ++
Sbjct: 127 KNRVFEEMDVP-VFTDRTRASLKIQEGCNNFCTFCIIPWSRGLLRSRDPESVINQADKLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ T YG D+ N +LL + +G +RI I + +
Sbjct: 186 KAGYKELVLTGIHTAGYGEDLKDYNFAMLLQELEK---VEGLERIRISSIEASQITDEVI 242
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++ + ++RH LH+P+Q+GSDAVL+ M R+Y+ ++ V + + +PG+ I
Sbjct: 243 DVLDKSKKIVRH------LHIPLQAGSDAVLARMRRKYSTGFYKEKVKKIKQALPGLAIT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGET+E+F +T N IKE + ++H+ F R GTPA+RM +V V ++R
Sbjct: 297 SDVIVGFPGETEEEFMETYNFIKEIGYSELHVFPFSRRTGTPASRMDNQVEDEVKEERVH 356
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGT 350
L S+ + E V + E D H LVG+T Y++V T +M+G
Sbjct: 357 RLISLSDQLAKEYASNYENEVLEVIPEERILDEGHPELLVGYTDNYMKVQFEGTPDMIGK 416
Query: 351 SALVKITSVGRWSVFGEVIKILNQ 374
VKIT G G ++I++
Sbjct: 417 IVRVKITKSGYPYNHGTFVRIMDN 440
>gi|448474662|ref|ZP_21602521.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
gi|445817969|gb|EMA67838.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
Length = 439
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 138/237 (58%), Gaps = 10/237 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+ ++ +DTG YG
Sbjct: 124 VGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAKEIRVTGQDTGVYG 183
Query: 140 RDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP I +E+ V R+ +Y+F+H
Sbjct: 184 WDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELVGVFARNEELYNFIHA 240
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL+ M R++ + FR VV + + ++TD I GFP ET D ++++L
Sbjct: 241 PVQSGSDEVLADMRRQHRVDKFREVVAEFDDRLDHWTLSTDFIVGFPTETAADHERSMDL 300
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLG 309
+ E + ++++++F RPGT AA MK + V K+RS+ ++ V EA+ +G
Sbjct: 301 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEVVGEAYEAMVG 357
>gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
Length = 454
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 181/379 (47%), Gaps = 30/379 (7%)
Query: 12 KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRLLHRK 64
K+ + + GC+ G RD + L+ V +V G Q I+R+ ++ L GH V +
Sbjct: 85 KRIVCIGGCI--GQRDGIALTETLDNVDVVFGTQNIERLPYLITGVLSQGGHFVEIEQDS 142
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ DLP R + LPI VGC CT+C + RG S +E +V +A+G
Sbjct: 143 DSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGRERSRAIEDVVMNAEAYVAEG 202
Query: 125 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
VKE+ L ++ +YGRD+ +L A+ A G LR ++P + + + I
Sbjct: 203 VKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GVERLRFATSHPKDLTDEV--I 256
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + LH+PVQSGSD +L MNR Y + + +V L P + ++TD+I G
Sbjct: 257 AAFGELDNLMPALHLPVQSGSDRILEDMNRTYDSAHYLGLVRKLRASCPDIALSTDVIVG 316
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV- 300
FPGET+EDF T +LI+ + QV + R GTPAA M P V+++R L +
Sbjct: 317 FPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADMFDDTPRDVIQRRFDRLVELV 376
Query: 301 ----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-----LGTS 351
E +LG + ++ ++ D LVGH+ V V P M +G +
Sbjct: 377 QRKALEQNRRFLGRD--LDVLFEGPSRRDPSMLVGHSPHNVTVHAPLPAGMDASAFVGRT 434
Query: 352 ALVKITSVGRWSVFGEVIK 370
LV I W + G +++
Sbjct: 435 CLVHIDEAKTWYLSGTLVE 453
>gi|89895872|ref|YP_519359.1| hypothetical protein DSY3126 [Desulfitobacterium hafniense Y51]
gi|89335320|dbj|BAE84915.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 441
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 189/341 (55%), Gaps = 21/341 (6%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--- 69
+VV GC Q + ++ + GV +V G Q +++E++++ K + + R A
Sbjct: 83 VVVMGCYAQTAPGEILGIAGVDLVLGTQDRGKILELIDQVKKEQQPKSSVRTIWDAKTFE 142
Query: 70 DLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+LP + ++ L I GC CTYC +ARG + S E+ V ++A G KE+
Sbjct: 143 ELPLIEEESRTRATLKIQEGCNQFCTYCIIPYARGPVRSRIPENAVTEAEKLVAAGYKEI 202
Query: 129 WLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ TG+YG D+G + L L+ A+ A++ G LR+ P +E E+ +V+
Sbjct: 203 VLTGIHTGSYGEDLGEDWDLARLVKAL-AQI--KGLHRLRLSSIEP---MEFTPELIDVI 256
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+P V LH+P+Q GSDA+L+ M R YT+ +F+ ++ L L PG+ I TD+I GFPG
Sbjct: 257 INYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPGIAITTDVIVGFPG 316
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-EA 303
ET+++F +T+ ++ F +H+ + R GTPAA+ +++P+ + ++R + L V E+
Sbjct: 317 ETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKEERVKALLEVARES 376
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
Y+ + RVE + I ++ +G+ GHT Y+QV +P
Sbjct: 377 QEDYVRRFIGQRVE-VLIERVSPEGV-AAGHTGNYIQVHLP 415
>gi|219670301|ref|YP_002460736.1| MiaB family RNA modification protein [Desulfitobacterium hafniense
DCB-2]
gi|423076658|ref|ZP_17065366.1| tRNA methylthiotransferase YqeV [Desulfitobacterium hafniense DP7]
gi|219540561|gb|ACL22300.1| RNA modification enzyme, MiaB family [Desulfitobacterium hafniense
DCB-2]
gi|361852221|gb|EHL04487.1| tRNA methylthiotransferase YqeV [Desulfitobacterium hafniense DP7]
Length = 439
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 189/341 (55%), Gaps = 21/341 (6%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--- 69
+VV GC Q + ++ + GV +V G Q +++E++++ K + + R A
Sbjct: 81 VVVMGCYAQTAPGEILGIAGVDLVLGTQDRGKILELIDQVKKEQQPKSSVRTIWDAKTFE 140
Query: 70 DLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+LP + ++ L I GC CTYC +ARG + S E+ V ++A G KE+
Sbjct: 141 ELPLIEEESRTRATLKIQEGCNQFCTYCIIPYARGPVRSRIPENAVTEAEKLVAAGYKEI 200
Query: 129 WLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
L+ TG+YG D+G + L L+ A+ A++ G LR+ P +E E+ +V+
Sbjct: 201 VLTGIHTGSYGEDLGEDWDLARLVKAL-AQI--KGLHRLRLSSIEP---MEFTPELIDVI 254
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+P V LH+P+Q GSDA+L+ M R YT+ +F+ ++ L L PG+ I TD+I GFPG
Sbjct: 255 INYPAVCPHLHIPLQCGSDAILTRMKRPYTVKEFKELIQRLTSLQPGIAITTDVIVGFPG 314
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-EA 303
ET+++F +T+ ++ F +H+ + R GTPAA+ +++P+ + ++R + L V E+
Sbjct: 315 ETEQNFQETLETVRSCGFSGIHVFPYSKREGTPAAKYPEQIPNKIKEERVKALLEVARES 374
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 342
Y+ + RVE + I ++ +G+ GHT Y+QV +P
Sbjct: 375 QEDYVRRFIGQRVE-VLIERVSPEGV-AAGHTGNYIQVHLP 413
>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
Length = 460
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 26/376 (6%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRK 64
K+ + V GC+ Q G++ + + V +V G + V E++ E + ++ V + +
Sbjct: 87 KRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESNDDEVFVDTIEKN 146
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + DLP R F +PI GC CT+C + RG S +E +V VR + DG
Sbjct: 147 RGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLERVVDEVRRLKDDG 206
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEI 182
V+EV L ++ +YGRD+ P + V E+ G +R +NP + + + I
Sbjct: 207 VREVTLLGQNVNSYGRDL-YKKPCFAELLRKVGEV---GIERIRFTSSNPKDLSD--ETI 260
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + P V LH+ VQSGS +L AM+R YT + V+D L +P + ++TDII G
Sbjct: 261 AAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPDIALSTDIIVG 320
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVF 301
FPGET+EDF +T++L++E ++ + RPGTPAA ++ P V+++R LT +
Sbjct: 321 FPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQQRFNRLTDLI 380
Query: 302 EAFTPYLGMEGRVERIWITEIAA----DGIHLVGHTKGYVQVLV-----PSTGNMLGTSA 352
E Y + + + + + D LVGH+ VL S + +G
Sbjct: 381 EELA-YKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLFSLPKDASAQDYIGKMC 439
Query: 353 LVKITSVGRWSVFGEV 368
V + W + G++
Sbjct: 440 EVYVEEAKTWYLRGKL 455
>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying protein [Thermotoga petrophila RKU-1]
gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
Length = 434
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 158/287 (55%), Gaps = 18/287 (6%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLP 72
+++ GC Q S D E +S+ V ID +V+ +L G + ++ P +
Sbjct: 72 IILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIVSEPGRPVYE-- 127
Query: 73 KVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEV 128
KV+ ++ + + GC CTYC + ARG + S +E ++A G KE+
Sbjct: 128 KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVEMVAKGYKEI 187
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 187
++ + G YG+D+G +L LL ++ ++P G +R+ N + + EI E R
Sbjct: 188 VITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND---EIVEAFKR 241
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII GFPGET
Sbjct: 242 NPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTDIIVGFPGET 301
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
D+DF +T++L+++ F +VHI +F PRPGTPA+RM VP + K+R
Sbjct: 302 DDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348
>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
Length = 442
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 161/312 (51%), Gaps = 23/312 (7%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P R + I GC CTYC + RG S + E ++ ++ ++ADGVKEV
Sbjct: 141 DMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKEIKKLVADGVKEVM 200
Query: 130 LSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
L ++ +YG+D+G +L LL A+ + LP +R ++P + L E
Sbjct: 201 LLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHPRDFSDKLIEAVTN 255
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
L + C + H+P+QSGSD +L MNR YT ++ +V L P I+TD+I GFPG
Sbjct: 256 LENVCEH--FHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPKAAISTDLIVGFPG 313
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF 304
ET+EDF +T+ L K+ +F + + R GTPAA+M ++VP K+R + L +
Sbjct: 314 ETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKKERHQRLLDL---- 369
Query: 305 TPYLGM-EGRVERIWITEIAADG------IHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+G+ E + + I E+ DG L G T+ V++ S ++ G VKI
Sbjct: 370 QSKIGLEENKKLKGEIVEVLVDGPSKKDPNKLSGRTRTDKIVIIESDQDLTGEIINVKIN 429
Query: 358 SVGRWSVFGEVI 369
W++FG+++
Sbjct: 430 KAQSWTLFGKIV 441
>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
15829]
Length = 455
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 26/376 (6%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRK 64
K+ + V GC+ Q G++ + + V +V G + V E++ E + ++ V + +
Sbjct: 82 KRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESNDDEVFVDTIEKN 141
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + DLP R F +PI GC CT+C + RG S +E +V VR + DG
Sbjct: 142 RGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLERVVDEVRRLKDDG 201
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEI 182
V+EV L ++ +YGRD+ P + V E+ G +R +NP + + + I
Sbjct: 202 VREVTLLGQNVNSYGRDL-YKKPCFAELLRKVGEV---GIERIRFTSSNPKDLSD--ETI 255
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + P V LH+ VQSGS +L AM+R YT + V+D L +P + ++TDII G
Sbjct: 256 AAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPDIALSTDIIVG 315
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVF 301
FPGET+EDF +T++L++E ++ + RPGTPAA ++ P V+++R LT +
Sbjct: 316 FPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQQRFNRLTDLI 375
Query: 302 EAFTPYLGMEGRVERIWITEIAA----DGIHLVGHTKGYVQVLV-----PSTGNMLGTSA 352
E Y + + + + + D LVGH+ VL S + +G
Sbjct: 376 EELA-YKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLFSLPKDASAQDYIGKMC 434
Query: 353 LVKITSVGRWSVFGEV 368
V + W + G++
Sbjct: 435 EVYVEEAKTWYLRGKL 450
>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
gi|337736504|ref|YP_004635951.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
gi|384458011|ref|YP_005670431.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|336292009|gb|AEI33143.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
Length = 436
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 194/381 (50%), Gaps = 21/381 (5%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKG 55
+I++ + A K V+A GC Q + E+EGV IV G + I V + +EE +
Sbjct: 59 MISRARKANKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQI 118
Query: 56 HEVR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
V+ + KK L++ + + +K L I GC C+YC +ARG + S E ++
Sbjct: 119 VNVKDVFTDKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVI 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
G ++ + G KE+ LS +YG D+ + L++ I DG +RIG P F
Sbjct: 178 GEIKRLAEHGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRF 236
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E + ++ C + H+ +QSG L MNR+YT +++ +V L E + +
Sbjct: 237 FDEDTISKIKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVS 294
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KR 293
I TD+I GFPGETDE+F +T + +KE + ++H+ ++ PR GT AA MK + VK KR
Sbjct: 295 ITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKR 354
Query: 294 SRELTSVFEA-----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
S EL + + + +L E V ++ ++ + G+T Y++V+V S+ ++
Sbjct: 355 SAELIELDKINEKKFMSKFLDREMDV--LFEKKLEENEDLYEGYTPNYIKVVVKSSEDIS 412
Query: 349 GTSALVKITSVGRWSVFGEVI 369
VK+T + + GE+I
Sbjct: 413 RKILKVKLTEIQDEHLLGELI 433
>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Ornithinibacillus scapharcae TW25]
Length = 525
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 182/371 (49%), Gaps = 16/371 (4%)
Query: 9 KSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 59
K+ K L+ V GC+ Q R +K+ + + +V G I R+ +V+E + G E V
Sbjct: 148 KTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQVVE 207
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ ++ +LPK R+ K + I GC CTYC RG S + ++ +R
Sbjct: 208 VWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEIRH 267
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ A+G +EV L ++ AYG+D ++ ++ ++ +R ++P +HL
Sbjct: 268 LAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDDHL 326
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ + + + +H+PVQSGS VL MNR+YT D+ VV + E +P + TDI
Sbjct: 327 IEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNRKYTREDYLEVVRKIREAIPNATLTTDI 384
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFP ETDE F +T+ L++E F + + PR GTPAA+ K VP V K+R L
Sbjct: 385 IVGFPNETDEQFEETMTLVEEVGFEAAYTFIYSPREGTPAAKKKDDVPEEVKKQRLYRLN 444
Query: 299 SVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ ++ EG+ ++ + E D L G+T+ V + +G VK
Sbjct: 445 ELVNKQSAASMKSYEGKTVKVLVEGESKKDPNILAGYTEKNKLVNFKGPKSSIGKIVDVK 504
Query: 356 ITSVGRWSVFG 366
IT WS+ G
Sbjct: 505 ITETKTWSLNG 515
>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
Length = 434
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 158/287 (55%), Gaps = 18/287 (6%)
Query: 15 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLP 72
+++ GC Q S D E +S+ V ID +V+ +L G + ++ P +
Sbjct: 72 IILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIVSEPGRPVYE-- 127
Query: 73 KVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEV 128
KV+ ++ + + GC CTYC + ARG + S +E ++A G KE+
Sbjct: 128 KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVEMVAKGYKEI 187
Query: 129 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 187
++ + G YG+D+G +L LL ++ ++P G +R+ N + + EI E R
Sbjct: 188 VITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND---EIVEAFKR 241
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII GFPGET
Sbjct: 242 NPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTDIIVGFPGET 301
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
D+DF +T++L+++ F +VHI +F PRPGTPA+RM VP + K+R
Sbjct: 302 DDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348
>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
Length = 438
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 184/369 (49%), Gaps = 31/369 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-----------EVRLL 61
+ V GC Q +++ L+GV +V G ++ R+V+ VE +L+ + R+
Sbjct: 80 IAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGAFGTITDIMQARVF 139
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P LP R L I GC CT+C +ARG + S + ++ +R ++
Sbjct: 140 --EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVAREMRLLV 193
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ P L +A L G LR+G +E +
Sbjct: 194 DAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLGSLES---VELSAD 249
Query: 182 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ E++R P + LH+P+Q+GSDAVL AMNR YT + F +V + VPG+ I+TDII
Sbjct: 250 LLELMRTEPRFAAHLHLPLQAGSDAVLRAMNRHYTTAQFAQLVMEVRAAVPGVAISTDII 309
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTS 299
GFPGET+ DF ++ ++ F ++H+ + R GTPAA R +VP V K+R+ + +
Sbjct: 310 VGFPGETEADFAAGMDFVRRMGFARMHVFPYSARRGTPAARRTDQVPPMVRKERAARMQA 369
Query: 300 VFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VPSTGNMLGTSALVK 355
+ E + M G V + E DG+ G T+ YV+V P T + L+
Sbjct: 370 LAEELAEGYHRSMLGSVAEVLF-ETQEDGV-TDGLTETYVRVYTDAPVTRGEIVPVRLMH 427
Query: 356 ITSVGRWSV 364
I G W +
Sbjct: 428 IYKDGVWGM 436
>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
Length = 434
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 189/364 (51%), Gaps = 31/364 (8%)
Query: 15 LVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPK 73
+++ GC Q S D + L I+G+ + +V+ + +L G + ++ P + K
Sbjct: 72 IILTGCFAQLSPDEARNLPVDMILGIDEKKNIVDHIN-SLNGKQQVVVSEPGRPVYE--K 128
Query: 74 VR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVW 129
V+ ++ + + GC CTYC + ARG + S +E ++ G KE+
Sbjct: 129 VKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMKGYKEIV 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RH 188
++ + G YG+D+G +L LL IV E+P G +R+ N + + EI E R+
Sbjct: 189 ITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND---EIVEAFKRN 242
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII GFPGETD
Sbjct: 243 PRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDIIVGFPGETD 302
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVVKKRSRELTSV 300
DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+K+++++++
Sbjct: 303 ADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLKEKAKDVSIR 362
Query: 301 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ +G E +V W G+ L G+ + YV+ GN +G V++ S+
Sbjct: 363 YRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVKHEF--VGNRVGEFHSVRVKSLS 414
Query: 361 RWSV 364
V
Sbjct: 415 EEGV 418
>gi|160947755|ref|ZP_02094922.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
gi|158446889|gb|EDP23884.1| tRNA methylthiotransferase YqeV [Parvimonas micra ATCC 33270]
Length = 443
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 186/383 (48%), Gaps = 23/383 (6%)
Query: 4 LIAKCKSAKKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EV 58
I++ K K L V GC Q + D + +E V I+G + R+VE+ EE+ K + +
Sbjct: 67 FISRAKKLNKDAILAVVGCYSQVAPDEISAIEDVDVIIGTKNRARIVELCEESKKSNLKF 126
Query: 59 RLLHR-KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
++ K D+ + + +K + I GC CTYC +ARG + S ++ +
Sbjct: 127 NIVSELTKDCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYE 186
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMT 170
+ +G KEV ++ G+YG D+G N L++ I + L + + G+
Sbjct: 187 EAVKLANNGYKEVIITGIHVGSYGLDLG-NDTRLIDVIEKLSTIENLDRIRLSSIEAGII 245
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+ F++ LK +V H H+ +QSG D +L MNR YT +R V + E+
Sbjct: 246 SEDFLI-RLKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTADMYRKKVRMIKEIF 298
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
P + + TDII GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K+ V
Sbjct: 299 PNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGNV 358
Query: 291 KK-RSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
KK RS EL + + T +L E + + E +G LVG+T+ Y++ P +M
Sbjct: 359 KKFRSNELILLAKDMTTEFLKKELSEKHEVLFEENINGNRLVGYTRNYIRFSAPYNEDMK 418
Query: 349 GTSALVKITSVGRWSVFGEVIKI 371
SV +FG KI
Sbjct: 419 NKVVYCNGISVEGEEIFGLASKI 441
>gi|429759389|ref|ZP_19291888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
gi|429179665|gb|EKY20904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
Length = 426
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+ +
Sbjct: 52 LKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQ 111
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 112 INVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 169
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 170 VTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQD 226
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + +
Sbjct: 227 MTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVV 284
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R
Sbjct: 285 VTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVR 344
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
++L + + L MEG+V I + +A D G T G VL P + +G
Sbjct: 345 LQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIG 404
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G + K
Sbjct: 405 DTVPAYIDKAQTWVCYGTIQK 425
>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
Length = 438
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+ +
Sbjct: 64 LKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 124 INVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + +
Sbjct: 239 MTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R
Sbjct: 297 VTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
++L + + L MEG+V I + +A D G T G VL P + +G
Sbjct: 357 LQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G + K
Sbjct: 417 DTVPAYIDKAQTWVCYGTIQK 437
>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
Length = 452
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 187/389 (48%), Gaps = 40/389 (10%)
Query: 7 KCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV--- 58
K + L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 72 KLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQVVAT 129
Query: 59 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 116
LH + D+ K RR V +NV GC CTYC RG S T E++
Sbjct: 130 EALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAIRAE 184
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 168
+ + G KEV L ++ AYGRD+ G NL L + + V ++P G +R
Sbjct: 185 MEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFA 242
Query: 169 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
++P + E L + L P V H+P QSG + +L AM R YT +R ++D +
Sbjct: 243 TSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDMIRH 300
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P I+ D I GFPGET+E F T+ L++E F ++ + + PRPGTPAA + S
Sbjct: 301 YMPDASISADAIVGFPGETEEQFENTLKLLEEISFDMLNTAAYSPRPGTPAAVWENQLSE 360
Query: 289 VVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLV 341
VK +R L S+ E YL GR+E + + E D ++G T+G
Sbjct: 361 EVKSDRLQRLNHLVSIKAAERSQRYL---GRIEEVLVEEQNTKDPTQVMGRTRGNRLTFF 417
Query: 342 PSTGNML-GTSALVKITSVGRWSVFGEVI 369
N L G VKIT +S+ GE I
Sbjct: 418 TGDINQLKGQLVQVKITESRAFSLSGEAI 446
>gi|385799559|ref|YP_005835963.1| MiaB family RNA modification protein [Halanaerobium praevalens DSM
2228]
gi|309388923|gb|ADO76803.1| RNA modification enzyme, MiaB family [Halanaerobium praevalens DSM
2228]
Length = 438
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 196/375 (52%), Gaps = 15/375 (4%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--RLL 61
AK K + + + GC Q D ++ +E + V G ++ EE L G + L
Sbjct: 67 AKRKYSNSLVAIVGCYTQAFPDEVRNIEEIDFVMGSNNKAEILAKAEEMLAGKNINSELK 126
Query: 62 HRKKLPALDLPKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
++L + K++ N + I GC C+YC +ARG + S ES+ V+
Sbjct: 127 EYQQLKEYEDLKLKSLSNTTRANVKIEDGCNQFCSYCIIPYARGPVRSRKKESITEEVKR 186
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ GVKE+ L+ GAYG D G + A + E + ++ R+ +++ E
Sbjct: 187 LSKQGVKEIVLTGTHLGAYGSDKGNKKAL---AQLMESLTEIKSLKRVRLSSIEGT-EID 242
Query: 180 KEIAEVLRHPCVYS-FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ I ++ ++ LH+P+QSGS+ +L AMNR YT+ +F+ V L + +P + I TD
Sbjct: 243 QGIINLISESDIFCPHLHLPLQSGSNQILKAMNRPYTVEEFKKTVAKLRKKIPDLAITTD 302
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 298
+I GFPGET++ F +T+ ++KE F +VH+ + R GTPAA+M+++ +VK+ S++L
Sbjct: 303 VIVGFPGETEKTFAETLKVVKEISFAKVHVFPYSAREGTPAAKMEQLNGNIVKEYSKKLR 362
Query: 299 SVFEAFTPYLGME--GRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVK 355
EA E G+ +++ I E+ +L+ G+T Y++VL+ + + + VK
Sbjct: 363 LANEALMLNYQKEFIGKTKKVLIEEVRDHKTNLLTGYTDNYLKVLISGSDALKNSLVKVK 422
Query: 356 I-TSVGRWSVFGEVI 369
+ S+ + + G++I
Sbjct: 423 LEESIDPYHLSGKII 437
>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
Length = 438
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+ +
Sbjct: 64 LKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 124 INVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + +
Sbjct: 239 MTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R
Sbjct: 297 VTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
++L + + L MEG+V I + +A D G T G VL P + +G
Sbjct: 357 LQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G + K
Sbjct: 417 DTVPAYIDKAQTWVCYGTIQK 437
>gi|343521071|ref|ZP_08758039.1| MiaB-like protein [Parvimonas sp. oral taxon 393 str. F0440]
gi|343396277|gb|EGV08814.1| MiaB-like protein [Parvimonas sp. oral taxon 393 str. F0440]
Length = 436
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 188/383 (49%), Gaps = 23/383 (6%)
Query: 4 LIAKCKSAKKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EV 58
I++ K K L V GC Q + D + E+E V I+G + ++V++ EE+ K + +
Sbjct: 60 FISRAKKLNKNAILAVVGCYSQVAPDEISEIEDVDVIIGTKNRAKIVDLCEESKKSNLKF 119
Query: 59 RLLHR-KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
++ K D+ + + +K + I GC CTYC +ARG + S ++ +
Sbjct: 120 NIVSELTKDCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYE 179
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMT 170
+ +G KEV ++ G+YG D+G ++ L++ I + L + + G+
Sbjct: 180 EAVKLANNGYKEVIITGIHVGSYGLDLGNDIR-LIDVIEKLSTIENLDRIRLSSIEAGII 238
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+ F++ LK +V H H+ +QSG D +L MNR YT +R V + E+
Sbjct: 239 SKDFLI-RLKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTTDMYRKKVLMIKEIF 291
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 289
P + + TDII GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K +V V
Sbjct: 292 PNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAYDFKDQVDGNV 351
Query: 290 VKKRSRELTSVF-EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
K RS EL + E T +L E + + E +G LVG+T+ Y++ P +M
Sbjct: 352 KKFRSNELILLSKEMTTEFLKKELSEKHEVLFEENINGNKLVGYTRNYIRFSAPYNEDMK 411
Query: 349 GTSALVKITSVGRWSVFGEVIKI 371
SV +FG KI
Sbjct: 412 NKVVYCNGISVDGEEIFGLASKI 434
>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
Length = 442
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 184/367 (50%), Gaps = 21/367 (5%)
Query: 15 LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVRLLHRK-----KL 66
+ VAGCVPQ ++ + V +V G ++ +++E + G V +L+RK KL
Sbjct: 77 VAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVEILNRKIPEEEKL 136
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
P +D N F+ + + GC CTYC RG S +V V+ + GVK
Sbjct: 137 PLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVVEEVKRLAERGVK 194
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
EV L ++ YG G +L LL +V+E+ +G +R ++P E IA +
Sbjct: 195 EVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAGFSER---IARAI 247
Query: 187 RH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R P V ++H+P QSGS+ VL MNR YT ++ V L E VP + ++ D I GFPG
Sbjct: 248 RDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLREFVPNVALSGDFIVGFPG 307
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF--E 302
ET+EDF QT++L++E F Q + ++ PRP T AA K VP V +R + L + +
Sbjct: 308 ETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPKEVKNRRLQTLQELVKKQ 367
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
A L G+VE + I + G L G T V V + ++G + V+IT +
Sbjct: 368 ALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEGSEELIGKTVEVEITQASPF 427
Query: 363 SVFGEVI 369
+ G+ +
Sbjct: 428 FLKGKPV 434
>gi|258516358|ref|YP_003192580.1| MiaB family RNA modification protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
DSM 771]
Length = 435
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 21/303 (6%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-------RLLHRKK 65
+ V GC Q S +L L V +VG D++V++VE + K ++ + ++
Sbjct: 75 IAVTGCYAQTSPGELMSLPEVDLVVGTSDRDKIVDLVEASSKAEKINAVADIEKACFYEE 134
Query: 66 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
LPA + + L I GC C+YC +ARG L S E+++ +++A G
Sbjct: 135 LPA----PAGQGRVRAYLKIQEGCRNFCSYCIIPYARGPLRSRQPEAVLNEAESLLAAGF 190
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 184
KE+ L+ TGAYG D+ L AIV +L G + LR+ P + E+ E
Sbjct: 191 KEIVLTGIQTGAYGVDLPAKTS--LAAIVEKLLRISGLSRLRLSSIEPN---DLSPELIE 245
Query: 185 VLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++ H ++ LH+P+QSGSD VL M R YT + +++ L E +P + + TDI+ GF
Sbjct: 246 LILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKMPNLAVTTDIMAGF 305
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE 302
PGET+EDF Q + IK+ F +H+ ++ PR GTPAA ++V + V ++RSR L ++ E
Sbjct: 306 PGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARVKEQRSRRLIALGE 365
Query: 303 AFT 305
T
Sbjct: 366 QLT 368
>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
Length = 435
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 183/384 (47%), Gaps = 42/384 (10%)
Query: 9 KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRKK 65
K KPL VV GC PQ + ++ LEGV + VG + R+VE+VEE RL R
Sbjct: 67 KRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGERDA 119
Query: 66 LPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
P LDLP V ++ L I GC C+YC +ARGHL S + S
Sbjct: 120 APVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRPLSS 179
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+ V + +G KEV L G YG++ N L +A+ A L LR+G
Sbjct: 180 IRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS--- 235
Query: 173 PFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
LE ++ E+LR P LH+P+QSG D +L AMNR Y + F+ ++D +
Sbjct: 236 ---LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDRIRA 292
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
VP + I TDII GFPGET+ DF QT+ + F ++HI + R GTPAA K S
Sbjct: 293 AVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERKDQLSN 352
Query: 289 VVKK-RSRELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
K+ R L +V E F L GR + +I G+ G T YV+V + S
Sbjct: 353 KEKEDRVHRLEAVDRKGNEIFRKTLI--GRQYPVLWEQIGRKGL-WEGLTPNYVRVYLKS 409
Query: 344 TGNMLGTSALVKITSVGRWSVFGE 367
++ GT V +T + V E
Sbjct: 410 EEDLTGTLTTVAVTGLFDDGVLAE 433
>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
Length = 433
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 194/375 (51%), Gaps = 20/375 (5%)
Query: 6 AKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 60
AK + + + V GC Q + +++ +EGV+IV G + +++VE VE ++ L
Sbjct: 64 AKRNNEEAIIAVVGCYAQTAPKEVLAIEGVNIVIGTNERNKIVEAVENCSTEEKISLVDD 123
Query: 61 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ K+ + + V+ +K L I GC CTYC +ARG + S +V V T
Sbjct: 124 IMKVKQFEEMSIVDVK-DKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPLEIVEEVET 182
Query: 120 VIADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FIL 176
++ G KEV L+ +YG+D G +L +L + G +R+ P F
Sbjct: 183 LVQKGFKEVVLTGIHVASYGKDRSDGTDLIHILKQVNG---AQGLERIRLSSLEPTLFTD 239
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
+ L+E++++ + + H+ +QSG +A L MNR+YT +++ + + ++ P + +
Sbjct: 240 DFLRELSQLDK---ICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKVYPEVALT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSR 295
TD+I GFPGET+E+FN T IK+ F ++H+ ++ PR GTPA++ K+ + K RS
Sbjct: 297 TDVIVGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVDGLTKHYRSE 356
Query: 296 ELTSVFEAF-TPYLG-MEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSA 352
+L + E Y G G+ ++ I+ + ++ G+T Y++VLVP++ + G
Sbjct: 357 KLIDLGEKMKNQYRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVPASEVVEGELT 416
Query: 353 LVKITSVGRWSVFGE 367
V + + + GE
Sbjct: 417 NVVLKELKEEYILGE 431
>gi|291457707|ref|ZP_06597097.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|291380760|gb|EFE88278.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve DSM
20213 = JCM 1192]
Length = 483
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 160/317 (50%), Gaps = 20/317 (6%)
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ P+ LP R ++ + I+VGC CT+C RG ++ VR +A+
Sbjct: 161 QQFPS-QLPAARASRVSSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEVRQCVAN 219
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 180
G KEV L ++ ++G IG LL A DG +R +P F + ++
Sbjct: 220 GAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDVIE 276
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE P V LH+P+QSGSD +L AM R Y S F T+++ + + +P QI+TDII
Sbjct: 277 AMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILEKVRQAMPDAQISTDII 333
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++++++ +F + PRPGTPAA M++VP VV+ R L ++
Sbjct: 334 VGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEMEQVPHDVVQDRFNRLVAL 393
Query: 301 FEAFTP--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGT 350
E T EGR + IT + AD + G K V + VP M +G
Sbjct: 394 QEQITAENLQSFEGRDVEVMITGTQGKKDADTHRVTGREKTGVLVHIGVPEGQPMPQIGD 453
Query: 351 SALVKITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 454 FVTATVTHAGRHNLIAD 470
>gi|421074954|ref|ZP_15535973.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
gi|392527014|gb|EIW50121.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
Length = 435
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 186/371 (50%), Gaps = 25/371 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEE--------TLKGHEVRLLHRK 64
+ VAGC Q S ++++ +EGV IVG Q R+V++VE+ + + + H +
Sbjct: 73 VAVAGCYAQISPKEIEAIEGVKVIVGTQDRKRIVDLVEQAAHCMSPVNVVTNIMNAEHFE 132
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+P + P R L I GC CTYC +ARG L S ++ S++ +IA G
Sbjct: 133 DIPLFEAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLASIIQETEKLIAAG 188
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
KE+ L+ GAYG D+ + L + + + L G LR+G I + L IA
Sbjct: 189 FKEIVLTGIHLGAYGHDVEDKI-TLADVVRSILSIKGLVRLRLGSLESIEISDEL--IAL 245
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ + + S LH+P+Q+G A+L AMNR YTL +++ ++ + V + I+TDII GFP
Sbjct: 246 MKQDDRLCSHLHLPLQAGDAAILKAMNRHYTLDEYQQLITNIRNKVEDIAISTDIIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 303
GET E FN + +++ F ++HI + R GTPAA ++P K+R + + + E
Sbjct: 306 GETPEMFNNALTFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKKRRVQIMQELAEK 365
Query: 304 -----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
+L + V ++ E + + G T Y++V NM G S V +
Sbjct: 366 KADEFLQRFLNRQFTV--LFEMENQKNANIIDGLTGNYIRVYTNGNQNMQGKSYQVLLEK 423
Query: 359 VGRWSVFGEVI 369
R V+G+++
Sbjct: 424 PYRDGVWGKIV 434
>gi|392427211|ref|YP_006468205.1| MiaB-like tRNA modifying enzyme [Desulfosporosinus acidiphilus SJ4]
gi|391357174|gb|AFM42873.1| MiaB-like tRNA modifying enzyme [Desulfosporosinus acidiphilus SJ4]
Length = 452
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 187/353 (52%), Gaps = 27/353 (7%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVRLLHR----K 64
+VV GC Q + ++ ++EGV +V G Q +++E +E E + VR + +
Sbjct: 96 VVVTGCYAQTAPGEVLDIEGVDLVLGTQDRGKIIEWIERVKRERRPQNAVRGIEDAGEFE 155
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+LP L+ ++ L I GC CTYC +ARG L S E + R ++ +G
Sbjct: 156 ELPQLN----EESRTRAFLKIQEGCNQFCTYCIIPYARGPLRSRQPEKALAEARKLVEEG 211
Query: 125 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
E+ L+ TG YG+D+ G NL L+ +V E+P G LR+ P +E+ E+
Sbjct: 212 YPEIVLTGIHTGFYGQDLNNGWNLARLVRELV-EIP--GLRRLRLSSIEP---MEYTPEL 265
Query: 183 AE-VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ ++ V +H+P+QSGSD +L M+R YTL D+R ++ L E +P + + TDII
Sbjct: 266 IDCIVSSDIVCPHVHMPLQSGSDEILVRMHRPYTLQDYRDLLIRLREKIPELAVTTDIIV 325
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 300
GFPGET+ D T+N +++ F VH+ + R GTPAA +VP + +R +EL +V
Sbjct: 326 GFPGETEADHLSTLNFVRDCNFAGVHVFPYSKRQGTPAADYPDQVPKKIKDQRVKELMAV 385
Query: 301 F-EAFTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
E+ Y+ G+ + I + ++G VGHT Y++V +P + TS
Sbjct: 386 ARESKEAYIRRFIGKPVEVLIESVDSEG-GAVGHTPHYIEVHLPKQKEITWTS 437
>gi|455652050|gb|EMF30731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
gancidicus BKS 13-15]
Length = 508
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 84 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 143
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 144 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 203
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 204 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIDGLERVRFTSPHPRDFTDDV- 261
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSDA+L AM R Y F +++ + +P I+TDII
Sbjct: 262 -IAAMAETPNVMPQLHMPLQSGSDAILKAMRRSYRQERFLGIIEKVRAAIPHAAISTDII 320
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L +
Sbjct: 321 VGFPGETEEDFQQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQIPKQVVQERYERLVA 380
Query: 300 VFEAFT 305
+ E +
Sbjct: 381 LQEEIS 386
>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
Length = 433
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 177/350 (50%), Gaps = 23/350 (6%)
Query: 4 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 57
LI K K + ++V GC Q + ++GV++V G RVVE+VE+ L+ E
Sbjct: 60 LIRKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQ 118
Query: 58 ---VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 113
VR ++ + + L +K + I GC CT+C + RG L S VE +
Sbjct: 119 ISIVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDI 178
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
V + ++ G E+ L+ G YG ++ + P L + + A L G +R+G
Sbjct: 179 VKEAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESV 237
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
+ E L ++ + + P + LH+P+Q+GSD +L MNR Y L +F+ ++ L +PG+
Sbjct: 238 EVSEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNRHYNLQEFKDLIARLRSRIPGL 295
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
I TDII GFPGETDEDF +T+ ++E F +H + R GTPAA M+ +VP AV K
Sbjct: 296 AITTDIIAGFPGETDEDFEETMRTVEEIGFTHIHAFPYSKREGTPAATMEDQVPEAVKKT 355
Query: 293 RSRELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 338
R L S+ + F M G+ I I E DG +L G T Y+
Sbjct: 356 RVALLNSLGQKGLQKFAEQ--MIGKPAEILI-EREEDGYYL-GFTNEYIH 401
>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
Length = 505
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII
Sbjct: 259 -IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAISTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQIPKKVVQERYERLVE 377
Query: 300 VFEAFT 305
+ EA +
Sbjct: 378 LQEAIS 383
>gi|418322700|ref|ZP_12934014.1| MiaB-like protein [Staphylococcus pettenkoferi VCU012]
gi|365231147|gb|EHM72206.1| MiaB-like protein [Staphylococcus pettenkoferi VCU012]
Length = 448
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 188/374 (50%), Gaps = 19/374 (5%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ ++ GV +V G Q ++++ +E+ K E ++ + L
Sbjct: 75 VTGCYAQTSPAEIMDIPGVDVVVGTQDRTKLLDYIEQYKKEREPINGVGNIMKNRTYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
++P ++ L I GC CT+C ARG + S E +V + ++ G KE+
Sbjct: 135 EVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQASQLVDSGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L+ TG YG+D+ NL LL + DG +RI + + E+ +V+ H
Sbjct: 194 LTGIHTGGYGQDLKNYNLAQLLRDLET---VDGLERIRISSIEASQLTD---EVIDVIAH 247
Query: 189 PC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
V LH+P+QSGSD+VL M R+Y+++ F + L E++PG+ + +D+I GFPGET
Sbjct: 248 SNKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERLTKLHEVLPGLAVTSDVIVGFPGET 307
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F QT + I ++ F ++H+ + PR GTPAARM +V V +R L ++ +
Sbjct: 308 EEEFQQTYDFIVDHHFSELHVFPYSPRIGTPAARMDDQVDENVKNERVHRLINLSDQLAK 367
Query: 307 YLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
+ V + E L+G+ Y++V + +++G VKIT
Sbjct: 368 SYASNFDQEVLEVIPEEEGDQPGTLIGYADNYMKVQFEADPSLIGELVKVKITRADYPMN 427
Query: 365 FGEVIKILNQVDDK 378
GEV++++ ++
Sbjct: 428 QGEVLRVVQHASNQ 441
>gi|384196818|ref|YP_005582562.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110554|gb|AEF27570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 483
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 160/317 (50%), Gaps = 20/317 (6%)
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ P+ LP R ++ + I+VGC CT+C RG ++ VR +A+
Sbjct: 161 QQFPS-QLPAARASRVSSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEVRQCVAN 219
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 180
G KEV L ++ ++G IG LL A DG +R +P F + ++
Sbjct: 220 GAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDVIE 276
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE P V LH+P+QSGSD +L AM R Y S F T+++ + + +P QI+TDII
Sbjct: 277 AMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILEKVRQAMPDAQISTDII 333
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++++++ +F + PRPGTPAA M++VP VV+ R L ++
Sbjct: 334 VGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEMEQVPHDVVQDRFDRLVAL 393
Query: 301 FEAFTP--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGT 350
E T EGR + IT + AD + G K V + VP M +G
Sbjct: 394 QEQITAENLQSFEGRDVEVMITGTQGKKDADTHRVTGREKTGVLVHIGVPEGQPMPQIGD 453
Query: 351 SALVKITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 454 FVTATVTHAGRHNLIAD 470
>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
Length = 438
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 186/381 (48%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+ +
Sbjct: 64 LKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHKHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 124 INVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + +
Sbjct: 239 MTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R
Sbjct: 297 VTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
++L + + L MEG V I + +A D G T G VL P + +G
Sbjct: 357 LQQLMDIQNEISLELNKTMEGHVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G + K
Sbjct: 417 DTVPAYIDKAQTWVCYGTIQK 437
>gi|335047513|ref|ZP_08540534.1| tRNA methylthiotransferase YqeV [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761321|gb|EGL38876.1| tRNA methylthiotransferase YqeV [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 436
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 186/383 (48%), Gaps = 23/383 (6%)
Query: 4 LIAKCKSAKKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EV 58
I++ K K L V GC Q + D + +E V I+G + R+VE+ EE+ K + +
Sbjct: 60 FISRAKKLNKDAILAVVGCYSQVAPDEIAAIEDVDVIIGTKNRARIVELCEESKKSNLKF 119
Query: 59 RLLHR-KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
++ K D+ + + +K + I GC CTYC +ARG + S ++ +
Sbjct: 120 NIVSELTKDCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYE 179
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMT 170
+ +G KEV ++ G+YG D+G N L++ I + L + + G+
Sbjct: 180 EAVKLANNGYKEVIITGIHVGSYGLDLG-NDTRLIDVIEKLSTIENLDRIRLSSIEAGII 238
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+ F++ LK +V H H+ +QSG D +L MNR YT +R V + E+
Sbjct: 239 SEDFLI-RLKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTTDMYRKKVRMIKEIF 291
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 290
P + + TDII GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K+ V
Sbjct: 292 PNVALTTDIIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGNV 351
Query: 291 KK-RSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
KK RS EL + + T +L E + + E +G L+G+T+ Y++ P +M
Sbjct: 352 KKFRSNELILLAKDMTTEFLKKELSEKHEVLFEENINGNRLIGYTRNYIRFSAPYNEDMK 411
Query: 349 GTSALVKITSVGRWSVFGEVIKI 371
SV +FG KI
Sbjct: 412 NKVVYCNGISVEGEEIFGLASKI 434
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 18/305 (5%)
Query: 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 134
R NKF +PI GC CTYC + RG S E ++ V + + GV EV L ++
Sbjct: 141 RENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQN 200
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-----VLRHP 189
+YG+D+G N +A+L + + RI F+ H +++++ V HP
Sbjct: 201 VDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLTSHPRDVSDKLIRVVATHP 251
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V H+P+Q+GSD +L M R YT S+++ +++ + +P +TDII GFPGE +E
Sbjct: 252 KVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKIRAEIPKASFSTDIIVGFPGEEEE 311
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTP 306
DF T ++E KF V+++ + RPGTPAA + +P K+ EL ++ +
Sbjct: 312 DFLATRRALEEIKFDTVNLAIYSKRPGTPAANYEDLIPYETKKRWFDELENLQRKIIYEK 371
Query: 307 YLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
L G+ E + E+ + L G T+ Y V + ++G LVKIT WS+
Sbjct: 372 NLSRVGKEEIVLAEEVNPKNPRELSGRTENYRLVFFEAEKELIGKFLLVKITEARLWSLK 431
Query: 366 GEVIK 370
GEVI+
Sbjct: 432 GEVIR 436
>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
gi|76558104|emb|CAI49690.1| MiaB-like tRNA modifying enzyme [Natronomonas pharaonis DSM 2160]
Length = 414
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 155/301 (51%), Gaps = 19/301 (6%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TK A G + S V V + R ++ G KE+ ++ +DTG YG
Sbjct: 122 VGILPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHAGAKELRITGQDTGVYG 181
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G LP LL+ I DG +R+GM NP + +E+A+V + +Y+F+H
Sbjct: 182 WDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGVHGIHEELADVFAENEKLYNFIHA 238
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + F+ +VD E + ++TD I GFP E + D ++ L
Sbjct: 239 PVQSGSDDVLEDMRRQHRVEKFKDIVDAFDERLDHWTLSTDFIVGFPTEDEADHELSMEL 298
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVE 315
+ E + ++++++F RPGT AA MK + + K+RS+ +T + Y M G
Sbjct: 299 LAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMTDLKMDICREVYGSMVGETR 358
Query: 316 RIWITEIAADGIHLVGHTKGYVQVLVPST-------GNMLGTSALVKITSVGRWSVFGEV 368
+ + E G + + Y QV+V G+ML V IT FGE
Sbjct: 359 EVLVVEQGT-GDSVKCRDEAYRQVIVTDATEHDIDPGDMLD----VTITDSETVYCFGEP 413
Query: 369 I 369
+
Sbjct: 414 V 414
>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
Length = 505
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A++P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIDGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSDAVL AM R Y + +++ + +P I+TDII
Sbjct: 259 -IAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKVRAAIPHAAISTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQIPKKVVQERYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 182/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V +V G I R+ ++ E E V + ++
Sbjct: 143 LGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKEMVVEVWSKEGDV 202
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ K + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 203 VENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 262
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ +L +R ++P +HL E+ + +
Sbjct: 263 ITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 319
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT + +V + + +P + + TDII GFP ET
Sbjct: 320 KGNLMEHIHLPVQSGSSEILKIMARKYTREQYLELVRKIKKAIPDVALTTDIIVGFPNET 379
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+E F +T++L++E F + + PR GTPAA+MK VP V K+R + L + +
Sbjct: 380 EEQFEETLSLVREVGFESAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNELVNELSA 439
Query: 307 YL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG++ + + E + L G+T+ V + +G VKIT W+
Sbjct: 440 KAMKKYEGKIVEVLVEGESKNNPDVLAGYTRRNKLVNFKGPKSAIGQIVKVKITEAKTWT 499
Query: 364 VFGEVI 369
+ GE++
Sbjct: 500 LNGEMV 505
>gi|417942472|ref|ZP_12585743.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
CECT 7263]
gi|376167121|gb|EHS85983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bifidobacterium breve
CECT 7263]
Length = 483
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 159/317 (50%), Gaps = 20/317 (6%)
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ P+ LP R + + I+VGC CT+C RG ++ VR +A+
Sbjct: 161 QQFPS-QLPAARASSVSSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEVRQCVAN 219
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 180
G KEV L ++ ++G IG LL A DG +R +P F + ++
Sbjct: 220 GAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDVIE 276
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE P V LH+P+QSGSD +L AM R Y S F T+++ + + +P QI+TDII
Sbjct: 277 AMAET---PNVMHQLHMPLQSGSDKILRAMRRSYRASKFMTILEKVRQAMPDAQISTDII 333
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++++++ +F + PRPGTPAA M++VP VV+ R L ++
Sbjct: 334 VGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEMEQVPHDVVQDRFNRLVAL 393
Query: 301 FEAFTP--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGT 350
E T EGR + IT + AD + G K V + VP M +G
Sbjct: 394 QEQITAENLQSFEGRDVEVMITGTQGKKDADTHRVTGREKTGVLVHIGVPEGQPMPQIGD 453
Query: 351 SALVKITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 454 FVTATVTHAGRHNLIAD 470
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q + LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ K + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA MK VP V K+R + L + + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERLKRLNDLVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEVI 369
+ GE++
Sbjct: 511 LTGELV 516
>gi|157736509|ref|YP_001489192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arcobacter
butzleri RM4018]
gi|229890442|sp|A8ERE9.1|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
Length = 436
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 171/342 (50%), Gaps = 16/342 (4%)
Query: 36 IVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 94
+VG + I ++ +VV+ +KG EV + + + + + NK+ + I+VGC CT
Sbjct: 102 VVGARNISKIKDVVD--VKGAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCT 157
Query: 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154
YC RG S E +V +VR + G EV L ++ +YGR +
Sbjct: 158 YCIVPSTRGEEISIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKL 217
Query: 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 214
+ + RI T+P + + I E ++P + +H+P+QSGS +VL AM R Y
Sbjct: 218 LQDVSKIDGLERIRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGY 277
Query: 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274
+ F + ELVP ++I TDII FPGET EDF T++++++ KF Q+ ++ PR
Sbjct: 278 SKEWFLNRASKMRELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPR 337
Query: 275 PGTPAARM--KKVPSAVVKKRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGI 327
PGT A + K++P + +R L + E YL + G I + + +G
Sbjct: 338 PGTEALNLKDKELPDEIGSQR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG- 393
Query: 328 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ G+T Y+QV + +LG VKIT V R S+ GEV+
Sbjct: 394 EVCGYTDNYLQVFAKGSDELLGKFVNVKITDVTRTSLKGEVV 435
>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus TCF52B]
gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
TCF52B]
Length = 429
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 200/386 (51%), Gaps = 30/386 (7%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEV 58
+ I + + K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG +
Sbjct: 58 STIGELRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKA 114
Query: 59 RLLHRKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ KL +D + R +K + I GC CTYC + RG S ++ ++
Sbjct: 115 AIFD-DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILRE 173
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP 173
V+ + +GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P
Sbjct: 174 VKNLSLNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYP 228
Query: 174 --FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
F L+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP
Sbjct: 229 TDFSLDIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVP 285
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAV 289
I++DII GFP ET++DF QTV L++E KF +++++ + PR GT A + VP A+
Sbjct: 286 DASISSDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPRAI 345
Query: 290 VKKRSRELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+R L ++ + L ++ VE I + E A G+ + + + +
Sbjct: 346 KTRRMAYLLNLQKEINKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKI-IAFEGDES 403
Query: 347 MLGTSALVKITSVGRWSVFGEVIKIL 372
++G LVKI ++G++IKI+
Sbjct: 404 LIGKKILVKIKKTTAGPLYGDIIKII 429
>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 437
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 190/377 (50%), Gaps = 29/377 (7%)
Query: 13 KPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHEVRLLHR-- 63
KPL VV GC PQ S D + ++GV I+G Q +VVE+V E L + +H
Sbjct: 70 KPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAPINAVHDLP 129
Query: 64 --KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
++ LD RN+ L I GC C YC +ARGHL S +++++ V +
Sbjct: 130 VGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDNIREEVAKL 187
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTNPPFILEHL 179
A+ KE+ L G YG++I P L +A+ A L + LR+G + + L
Sbjct: 188 TAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLESVEVEDAL 246
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
++ + R P + + LH+P+Q+G D+ L+ M+R Y + F +++ + LVP + I TD+
Sbjct: 247 LDL--MAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIRSLVPNVAITTDV 304
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299
I GFPGET+EDF +++ I++ +F ++HI + R GTPAA M P + + +E
Sbjct: 305 IVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVM---PDQISNQEKQERVH 361
Query: 300 VFEAFTPYLGMEGRVERI-------WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
E + R E+I W +G+ G T GYV+V S NM G +
Sbjct: 362 RLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGL-WEGLTPGYVRVYADSPENMKGKIS 420
Query: 353 LVKITSVGRWSVFGEVI 369
V++ ++ + G +I
Sbjct: 421 AVRLENLFEDGLKGGII 437
>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
Length = 451
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 185/379 (48%), Gaps = 30/379 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---RLLHRKKLPA 68
LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V LH +
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVATESLHIME--- 136
Query: 69 LDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
D+ K RR V + I GC C+YC + RG S T E++ G + + G KE
Sbjct: 137 -DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGFKE 195
Query: 128 VWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
V L ++ AYGRD+ G +L L + + +G LR ++P + E L +
Sbjct: 196 VTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPRYFTERLIQ 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ L P V H+P QSG + +L AM R YT + +++ + +P I+ D+I
Sbjct: 256 ACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDAAISADVIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET+ F T+NLI+E F ++ + + PRPGTPAA S VK +R L
Sbjct: 314 GFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEVKGDRLQRLNHL 373
Query: 298 --TSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKG-YVQVLVPSTGNMLGTSAL 353
T E YL GRVE + + E ++G T+G + +LG +
Sbjct: 374 VSTQAMERSQRYL---GRVEEVLVEGENLKSPGQVMGRTRGNRLTFFQGEISELLGKTVP 430
Query: 354 VKITSVGRWSVFGEVIKIL 372
VKIT +S+ GE + ++
Sbjct: 431 VKITEARAFSLTGEALSLV 449
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q + LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ K + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA MK VP V K+R + L + + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERLKRLNDLVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEVI 369
+ GE++
Sbjct: 511 LTGELV 516
>gi|224476684|ref|YP_002634290.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421291|emb|CAL28105.1| putative radical SAM family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 448
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 192/390 (49%), Gaps = 30/390 (7%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV +V G Q ++++ +EE + ++
Sbjct: 67 KNPDAVVCVTGCYAQTSSAEIMEIPGVDVVVGTQDRTKLLDYIEEFKVERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+K L++P ++ L I GC CT+C ARG + S E +V + T++
Sbjct: 127 KNRKYEELEVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATTLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG+D+ NL LL + DG +RI + + +
Sbjct: 186 NSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---IDGLERIRISSIEASQLTDEVI 242
Query: 181 EI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
+ +V+RH LHVP+QSGSD+VL M R+Y+++ F + L E +PG+ +
Sbjct: 243 NVISNSNKVVRH------LHVPLQSGSDSVLKRMRRKYSMAHFSERLMKLHEALPGLAVT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGET+E+F +T + I ++ F ++H+ + R GTPAARM ++ ++ +R
Sbjct: 297 SDVIVGFPGETEEEFQETYDFILKHHFSELHVFPYSARTGTPAARMDDQIDESIKNERVH 356
Query: 296 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
+L + E V + E LVG+ Y++V +++G
Sbjct: 357 KLIELSNQLAKEYASHFENEVLEVIPEEAGEAPGTLVGYADNYMKVEFEGDDSLIGELVR 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNR 383
VKIT G G V+++++ ASNR
Sbjct: 417 VKITQAGYPLNQGHVVRVIDH-----ASNR 441
>gi|302871917|ref|YP_003840553.1| MiaB family RNA modification protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
obsidiansis OB47]
Length = 433
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 196/382 (51%), Gaps = 29/382 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S + +VV GC PQ +++++ + I+ G + ++V+ V+E L ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLD-------NK 115
Query: 64 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 111
KK+ A+D +R F E+ + I GC C+YC +ARG + S ++E
Sbjct: 116 KKIVAID-EGYKRESFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLE 174
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171
S+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLE 233
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P + E I+ +L + LH+ +QSGSD +L MNR YT + ++ +V+ + E
Sbjct: 234 PLIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWD 291
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 290
+ TDII GFPGET+EDFN TV ++E F ++H+ +F P+ GT A M ++ S
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEK 351
Query: 291 KKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
++RS+ + V ++ + G+ + I + + + G++ Y++ LV + ++
Sbjct: 352 ERRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIV 411
Query: 349 -GTSALVKITSVGRWSVFGEVI 369
G VKIT V GE+I
Sbjct: 412 PGEIYKVKITQAYEQYVKGEII 433
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q + LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ K + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA MK VP V K+R + L + + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERLKRLNDLVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEVI 369
+ GE++
Sbjct: 511 LTGELV 516
>gi|406664478|ref|ZP_11072253.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405387326|gb|EKB46750.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 449
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 191/373 (51%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + VR ++ +
Sbjct: 78 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYRNERQPINAVRNIMKNRVYE 137
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E ++ + + ++ G E
Sbjct: 138 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEEVIRQAQQLVDAGYLE 196
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D NL LL + A++ G LRI + + E+ +VL
Sbjct: 197 IVLTGIHTGGYGQDFKDYNLAQLLRDLEAQVK--GLKRLRISSIEASQLTD---EVIDVL 251
Query: 187 RHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
++ V + LH+P+QSGSD VL M R+YT+ F ++ L +P + + +D+I GFPG
Sbjct: 252 QNSEIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFAERLEKLKIALPDLAVTSDVIVGFPG 311
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N I+++KF ++H+ + R GTPAARM+ +V + +R L ++ +
Sbjct: 312 ETEEEFMETYNFIRDHKFSELHVFPYSQRTGTPAARMEDQVDEEIKNERVHRLIALNDQL 371
Query: 305 TPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V + E D + VG+T Y++V+ T M+G VK+T
Sbjct: 372 AKEYASRFEGEVLEVIPEERFKDSDNENLYVGYTTNYLKVIFEGTEEMVGQLVKVKVTKA 431
Query: 360 GRWSVFGEVIKIL 372
G G+ +++L
Sbjct: 432 GYPYNEGQFVRVL 444
>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 433
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 184/376 (48%), Gaps = 23/376 (6%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK ++ + V GC Q S D ++ +EGV I+ G R+ E+VE K + ++
Sbjct: 65 AKRENPDSIVCVVGCYSQVSPDEVQAIEGVDIIMGTTDRSRIFELVE-NFKKDKNQISIV 123
Query: 64 KKLPAL-DLPKVRRNKFVEI----LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
K L + + +K E+ + + GC CTYC +ARG + S T+E V +
Sbjct: 124 KSLKGFTEFQHIEIDKESEMTRSYMKVQDGCNRYCTYCIIPYARGPIRSRTIEDSVEEAK 183
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--- 175
+ G KE+ L+ G+YG+D+G L++ I DG +R+ P I
Sbjct: 184 RLSEAGYKELVLTGIHIGSYGKDLGDER--LVDLIEEITKVDGIERIRLSSIEPITITRD 241
Query: 176 -LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
LE +K +V H H+ +QSGS+AVL AMNR YT ++ D + E P +
Sbjct: 242 FLERIKATGKVCDH------FHLSLQSGSNAVLKAMNRRYTREEYIETCDLIREYYPYVG 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KR 293
+ TDII GFPGETDEDF TV+L+K +F ++H+ ++ R GTPAA MK +K +R
Sbjct: 296 LTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSGTPAAEMKNQVDGNIKIER 355
Query: 294 SRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
S L + + + R ++ + E DG ++ G++ Y+ + + +
Sbjct: 356 SNRLLELSDKMMERFIEKNRDTKLKVLFEEEKDG-YMRGYSTNYIDCKIKTDLELKNQVR 414
Query: 353 LVKITSVGRWSVFGEV 368
KI ++ S E+
Sbjct: 415 DAKIVAIDGESAIVEI 430
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 178/368 (48%), Gaps = 19/368 (5%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ LK V ++ G I R+ ++ E K V + ++
Sbjct: 143 VCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKAMVVEVWSKEGDVIE 202
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ VR + A G +EV
Sbjct: 203 NLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRHLAAQGYQEVT 262
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+DI L ++ EL +R ++P +HL E+ + +
Sbjct: 263 LLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAKKG 320
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS AVL M R+YT F +V + +PG+ + TDII G+P ET+E
Sbjct: 321 NLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGKIKAAMPGVALTTDIIVGYPNETEE 380
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF-----EA 303
F +T++L +E F + PR GTPAA+M VP V K+R + L + EA
Sbjct: 381 QFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDNVPMEVKKERLQRLNQLVNEYSGEA 440
Query: 304 FTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
Y EG++ + + E + L G+T+ V + +G VKIT W
Sbjct: 441 LKQY---EGKIVEVLVEGESKKNPEILAGYTRRSKLVNFKAPKTAIGKIVKVKITDTKSW 497
Query: 363 SVFGEVIK 370
S+ GE+I+
Sbjct: 498 SLNGEMIE 505
>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
Length = 458
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 188/377 (49%), Gaps = 26/377 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ E++E+ L G++V ++ D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKELLEQVLDGNQVVATEPIQI-VEDI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ V +NV GC CTYC RG S T E++ + + G KE+
Sbjct: 139 TKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAEMEELSHQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKE 181
L ++ AYGRD+ G + L + + V ++P G +R ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFATSHPRYFTERLIQ 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
L P V H+P QSG + +L AM R YT +R ++DT+ +P I D I
Sbjct: 256 ACAEL--PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYMPDASITADAIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET++ F T+ LI++ F V+ + + PRPGTPAA + S VK +R L
Sbjct: 314 GFPGETEQQFENTLKLIEDISFDLVNTAAYSPRPGTPAAVWDQQLSEQVKSDRLQRINHL 373
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLGTSALVK 355
S+ +A GR+E + + + D ++G T+G + S + G VK
Sbjct: 374 VSI-QAAERSQRYFGRIEEVLVEDQNQKDPTQVMGRTRGNRLTFFKGSIAQLKGQIVQVK 432
Query: 356 ITSVGRWSVFGEVIKIL 372
IT V +S+ GE + +L
Sbjct: 433 ITEVRPFSLTGEPLAVL 449
>gi|339479399|gb|ABE95867.1| tRNA 2-methylthioadenosine synthase [Bifidobacterium breve UCC2003]
Length = 478
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 20/317 (6%)
Query: 64 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 123
++ P+ LP R ++ + I+VGC CT+C RG ++ VR +A+
Sbjct: 156 QQFPS-QLPAARASRVSSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEVRQCVAN 214
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 180
G KEV L ++ ++G IG LL A DG +R +P F + ++
Sbjct: 215 GAKEVTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDVIE 271
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+AE P V LH+P+QSGSD +L +M R Y S F T+++ + + +P QI+TDII
Sbjct: 272 AMAET---PNVMHQLHMPLQSGSDKILRSMRRSYRASKFMTILEKVRQAMPDAQISTDII 328
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++++++ +F + PRPGTPAA M++VP VV+ R L ++
Sbjct: 329 VGFPGETEEDFQQTLDVVRQARFSSAFTFIYSPRPGTPAAEMEQVPHDVVQDRFNRLVAL 388
Query: 301 FEAFTP--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGT 350
E T EGR + IT + AD + G K V + VP M +G
Sbjct: 389 QEQITAENLQSFEGRDVEVMITGTQGKKDADTHRVTGREKTGVLVHIGVPEGQPMPQIGD 448
Query: 351 SALVKITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 449 FVTATVTHAGRHNLIAD 465
>gi|451343574|ref|ZP_21912645.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337671|gb|EMD16828.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 435
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 181/376 (48%), Gaps = 24/376 (6%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 56
A+ ++ + V GC Q S + +++GV IV G Q +++VE VE+ LK H
Sbjct: 64 ARKRNPNSIIAVVGCYAQIASAAVADIDGVDIVIGTQNKNKIVEYVEDYLKNKQQIIDVH 123
Query: 57 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+V L K L++ N+ + I GC CT+C +ARG + S E ++ +
Sbjct: 124 DVMKL--KSFEDLNIASFE-NRTRAFMKIQDGCNNFCTFCIIPYARGAIRSRDKEDVIRQ 180
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 175
+ ++ G E+ L+ T YG D+ + LL + ++ G LRI +
Sbjct: 181 AQELVDKGFVEIVLTGIHTAGYGIDLEDYSFYDLLKDLTNKVK--GLKRLRISSIEMSQV 238
Query: 176 LEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+I ++ H + LH+P+QSG+D +L M R YT S+F ++ L E +P +
Sbjct: 239 TP---DIINLMAHSSIIVDHLHIPIQSGNDKILKKMARHYTTSEFEEKLNKLKEALPNLS 295
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TD+I GFPGET+EDF T IK+ F Q+H+ + R GTPAARM ++P + KKR
Sbjct: 296 VTTDVIVGFPGETEEDFESTYQWIKKNHFNQLHVFPYSARTGTPAARMPYQIPGDIKKKR 355
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
+ L + ++ G+ + E DG + +GH Y++V V +L
Sbjct: 356 VKRLLQLSDSLKAEFASWQIGKYLDVLFEE-EKDG-YKIGHASNYLKVKVRDQDIILNQI 413
Query: 352 ALVKITSVGRWSVFGE 367
+ I + GE
Sbjct: 414 YSIHIKEQNGVDLIGE 429
>gi|433637940|ref|YP_007283700.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
gi|433289744|gb|AGB15567.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
Length = 449
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 153/271 (56%), Gaps = 13/271 (4%)
Query: 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 139
V ILPI GC+ C+YC TKHA G + S ++E V + R ++ G KE+ ++ +DTG YG
Sbjct: 156 VGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALVHAGAKELRITGQDTGVYG 215
Query: 140 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHV 197
D G L LL I A +G +RIGM NP + +++A V + +Y FLH
Sbjct: 216 WDDGERKLHRLLERICA---IEGDFRVRIGMANPKGVHGIREKLASVFADNEELYDFLHA 272
Query: 198 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 257
PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP ETD D Q++ L
Sbjct: 273 PVQSGSDDVLGDMRRQHQVEEYVEVVETFDDALEYWTLSTDFIVGFPTETDHDHAQSMAL 332
Query: 258 IKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEG 312
++E + ++++++F RPGT AA MK + + K+RS E++ V EA+ +G E
Sbjct: 333 LRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSEMSEVKRELVREAYADMVG-ET 391
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
R + + + E D + Y Q++V S
Sbjct: 392 REDVLVVEEGTGDSVKC--RDSAYRQLIVQS 420
>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
Length = 436
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 171/342 (50%), Gaps = 16/342 (4%)
Query: 36 IVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 94
+VG + I ++ +VV+ +KG EV + + + + + NK+ + I+VGC CT
Sbjct: 102 VVGARNISKIKDVVD--VKGAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCT 157
Query: 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154
YC RG S E +V +VR + G EV L ++ +YGR +
Sbjct: 158 YCIVPSTRGEEISIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKL 217
Query: 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 214
+ + RI T+P + + I E ++P + +H+P+QSGS +VL AM R Y
Sbjct: 218 LQDVSKIDGLERIRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGY 277
Query: 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274
+ F + ELVP ++I TDII FPGET EDF T++++++ KF Q+ ++ PR
Sbjct: 278 SKEWFLNRASKMRELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPR 337
Query: 275 PGTPAARM--KKVPSAVVKKRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGI 327
PGT A + K++P + +R L + E YL + G I + + +G
Sbjct: 338 PGTEALNLKDKELPDEIGSQR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG- 393
Query: 328 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ G+T Y+QV + +LG VKIT V R S+ GEV+
Sbjct: 394 EVCGYTDNYLQVFAKGSDELLGKFVNVKITDVTRTSLKGEVV 435
>gi|429191122|ref|YP_007176800.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|448326688|ref|ZP_21516035.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
gi|429135340|gb|AFZ72351.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|445610493|gb|ELY64264.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
Length = 417
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 163/298 (54%), Gaps = 16/298 (5%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
ILPI GC+ C+YC TKHA G + S +++ V + R +I G KE+ ++ +DTG YG D
Sbjct: 126 ILPIARGCMSDCSYCITKHATGKIDSPSIDKNVAKARALIHAGAKEIRITGQDTGVYGWD 185
Query: 142 IGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPV 199
G L LL I A DG +R+GM NP + E+A V + +Y FLH PV
Sbjct: 186 DGERKLHELLERICA---IDGEFRVRVGMANPKGVHGIRDELAAVFAGNEKLYDFLHAPV 242
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD VL M R++ + ++ VV+ E + ++TD I GFP ET+ D Q++ L++
Sbjct: 243 QSGSDDVLGDMRRQHQVEEYLEVVEVFEEALDYWTLSTDFIVGFPTETEHDHEQSLALLR 302
Query: 260 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFEAFTPYLGMEGRV 314
E + ++++++F RPGT AA MK + V K+RS+E+++ V +A+ +G E R
Sbjct: 303 ETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSALKRDVVGDAYEAMVG-ERRE 361
Query: 315 ERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSVGRWSVFGEVI 369
+ + + AD + Y Q++V + G G +++T+ FGE I
Sbjct: 362 NCLVVEQGTADSVKC--RDSAYRQIIVQNATDHGLEPGDFVDLEVTAHETMYAFGEPI 417
>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7424]
gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
Length = 454
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 41/393 (10%)
Query: 9 KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
+ +KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 71 RKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVATE 130
Query: 63 RKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ D+ K RR V +NV GC CTYC + RG S T +++ + +
Sbjct: 131 PIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMVEL 188
Query: 121 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNP 172
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P
Sbjct: 189 GQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATSHP 246
Query: 173 PFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
+ E L KE+ +V H H+P QSG + +L AM R YT +R ++D + E
Sbjct: 247 RYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKRGYTHERYRQIIDKIRE 300
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA S
Sbjct: 301 YMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSE 360
Query: 289 VVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLV 341
VK +R L ++ E YL GR+E + + ++ D ++G T+G
Sbjct: 361 EVKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDVNPKDLTQVMGRTRGNRLTFF 417
Query: 342 PSTGNML-GTSALVKITSVGRWSVFGEVIKILN 373
N L G VKIT V +S+ GE +KIL+
Sbjct: 418 TGDINQLKGQLVEVKITDVRAFSLTGEPVKILS 450
>gi|452991330|emb|CCQ97390.1| Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium ultunense Esp]
Length = 432
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 53/379 (13%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE------------ 51
AK +A + GC Q +++ +EGV IV G + +V++ EE
Sbjct: 64 AKKANANSIIAAVGCYSQVAPEEVEAIEGVDIVIGTTDRNSIVDLCEEAKNKNKKINIVK 123
Query: 52 TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 111
++KGH K+ L++ ++ +K + I GC C+YC +ARG + S +E
Sbjct: 124 SIKGH-------KEFENLNIADLK-SKTRAYIKIQEGCNQFCSYCIIPYARGPIRSRDLE 175
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 170
++ + + G KEV L+ +YG+D + L ++ E+ DG +R+
Sbjct: 176 GIINESKRLAKAGFKEVILTGIHVTSYGKDFQ---DLTLVDVIEEISKIDGIERIRLSSI 232
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
P F+ E + A + C H+ +QSGS+ VL MNR+YT S ++ +V+ + E +
Sbjct: 233 EPRFVNEKFMQRAVNSKKLC--DHFHLSLQSGSNTVLKRMNRKYTTSQYKDIVNLIREYM 290
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 289
P I TDII GFPGET E+F +T N +K+ F ++H+ ++ PR GTPA+R K ++ +
Sbjct: 291 PDAGITTDIIVGFPGETAEEFEETYNYVKDIHFSRIHVFKYSPRKGTPASRFKDQIHGNI 350
Query: 290 VKKRSREL----TSVFEAFT--------PYLGMEGRVERIWITEIAADGIHLVGHTKGYV 337
++RS +L + E+F P L EG E+ W+ G+T Y+
Sbjct: 351 KQERSEKLILLGEELMESFNKKYIDKTLPVLFEEG--EKGWME----------GYTTNYI 398
Query: 338 QVLVPSTGNMLGTSALVKI 356
++ + + G VKI
Sbjct: 399 RIKAQAGDEIRGKILPVKI 417
>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
Length = 455
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 155/307 (50%), Gaps = 17/307 (5%)
Query: 10 SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLH 62
S K+ + + GC+ Q G K++ V +V G + V ++ + V
Sbjct: 80 SGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLSAAFADDDDSVKVDTSE 139
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
K + DLP R F +PI GC CTYC + RG S T E++VG ++A
Sbjct: 140 EHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEAVVGECERLVA 199
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
DGV+E+ L ++ +YGRD+ P + A + G LR +NP + + + I
Sbjct: 200 DGVREITLLGQNVNSYGRDL-YGTPRFAELLRA-VGKTGIERLRFTSSNPKDLTD--ETI 255
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + P V LH+ VQSGS +L MNR YT ++ +V L +P + +TDII G
Sbjct: 256 AAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDLVHRLKAAMPDIAFSTDIIVG 315
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKRSRELTSV- 300
FPGET+EDF QT++L+KE + + + RPGTPAA+ + S V+++R LT +
Sbjct: 316 FPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKFEDNTSHEVIQERFNRLTDLV 375
Query: 301 ----FEA 303
FEA
Sbjct: 376 AKQAFEA 382
>gi|424836394|ref|ZP_18261043.1| RNA modification protein [Clostridium sporogenes PA 3679]
gi|365977088|gb|EHN13191.1| RNA modification protein [Clostridium sporogenes PA 3679]
Length = 432
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 189/379 (49%), Gaps = 32/379 (8%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQ-------IDRVVEVVEETLKGHEVR 59
+++K + V GC Q ++ ++EGV +V G + I+R +E + ++ +V
Sbjct: 66 QNSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV- 124
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR
Sbjct: 125 -LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRK 182
Query: 120 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 183 LSKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIQRIRIGSIDPTFFTE 239
Query: 178 HLKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E++R + F H+ +QSG + L MNR+YT+ +R +V L + +
Sbjct: 240 E-----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYREIVYNLRTNIEAVS 294
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TDII GFPGET+E+FN+T +K+ K ++H+ +F PR T A +M+ +V + ++R
Sbjct: 295 ITTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATKAEKMENQVDGNIKEER 354
Query: 294 SRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
S ++ ++ A M +E+ ++ E GI G+T Y+++ S ++ G
Sbjct: 355 SNKIINLDRALEKEF-MNKFIEKEMLVLYEQETKEKGI-FEGYTPNYIKIYAKSLKDITG 412
Query: 350 TSALVKITSVGRWSVFGEV 368
K+ V + + GE+
Sbjct: 413 EIIRTKLKEVSKDFIKGEI 431
>gi|23099419|ref|NP_692885.1| hypothetical protein OB1964 [Oceanobacillus iheyensis HTE831]
gi|22777648|dbj|BAC13920.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 450
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 184/363 (50%), Gaps = 31/363 (8%)
Query: 17 VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLPAL 69
V GC Q S ++ E+ GV IV G Q + +EE K E ++ + +
Sbjct: 75 VTGCYAQTSPGEIMEIPGVDIVVGTQDRKNIFSYIEEHQKTKEPVNGVSNIMKNRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P V ++ L I GC CT+C +RG L S ++++ + ++ G KE+
Sbjct: 135 DVP-VFTDRTRASLKIQEGCNNFCTFCIIPWSRGLLRSRDPKNVIEQATKLVKAGYKELV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE---- 184
L+ T YG D+ N +LL + +G +RI I + + ++ +
Sbjct: 194 LTGIHTAGYGEDMKDYNFAMLLRELEE---VEGLERIRISSIEASQITDEVIDVIDQSNK 250
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LHVP+QSGSD+VL+ M R+Y+ S ++ V+ L + +PG+ I +D+I GFP
Sbjct: 251 IVRH------LHVPLQSGSDSVLARMRRKYSTSFYKEKVNKLQKALPGLAITSDVIVGFP 304
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 303
GET+E+F QT + IKE + ++H+ F R GTPAARM+ +V + +KR +L ++ +
Sbjct: 305 GETEEEFQQTYSFIKEIGYAELHVFPFSRRTGTPAARMENQVEDPIKEKRVHDLIALSDQ 364
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
R E + I + + LVG+T Y++V T +++G VK+T
Sbjct: 365 LAKEYA--SRYENEVLEVIPEEQVDENQSNTLVGYTDNYMKVQFEGTPDLIGKIVKVKVT 422
Query: 358 SVG 360
G
Sbjct: 423 QSG 425
>gi|222151475|ref|YP_002560631.1| hypothetical protein MCCL_1228 [Macrococcus caseolyticus JCSC5402]
gi|222120600|dbj|BAH17935.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 448
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 181/361 (50%), Gaps = 25/361 (6%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ ++ GV IV G Q +++ +E+ + ++ +
Sbjct: 73 ICVTGCYAQTSSAEIMDIAGVDIVVGTQDRHKMLPYIEQYRAERQPINGVTNIMKNRTYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + +V + ++ G +E
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVRQATQLVQSGYQE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ TG YG D+ NL LL + DG +RI + + + ++ +
Sbjct: 192 IVLTGIHTGGYGEDLKDYNLAQLLRDLET---IDGLKRIRISSIEASQLTDEVIDVIDKS 248
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
V+RH LH+P+QSGSD VL M R+YT+S F + L ++PG+ + +D+I G
Sbjct: 249 NKVVRH------LHIPLQSGSDTVLKRMRRKYTMSHFSERLKKLHAIMPGLAVTSDVIVG 302
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+E+F +T + I ++ F ++H+ + R GTPAARM ++ ++ R L ++
Sbjct: 303 FPGETEEEFQETYDFILQHGFSELHVFPYSMRTGTPAARMTDQIDESIKNDRVHRLITLS 362
Query: 302 EAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ EG V + E A++G LVG+T Y++V + +++G VKI
Sbjct: 363 DQLAKEYASRFEGDVLEVIPEEKASNGNMLVGYTDNYLKVQFEADEHLIGELVKVKIDKS 422
Query: 360 G 360
G
Sbjct: 423 G 423
>gi|239827771|ref|YP_002950395.1| MiaB family RNA modification protein [Geobacillus sp. WCH70]
gi|239808064|gb|ACS25129.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
Length = 451
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 195/387 (50%), Gaps = 26/387 (6%)
Query: 17 VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLPAL 69
V GC Q S ++ + GV IV G Q +++E +E + + ++ + +
Sbjct: 75 VTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYIERFQRERQPINGVSNIMKTRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C ARG + S + ++ + + ++ G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVDAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 187
L+ TG YG D+ + LL + ++ G LRI I + EI EVL R
Sbjct: 194 LTGIHTGGYGTDLKDYSFAALLRDLDEQVV--GLKRLRISSIEASQITD---EIIEVLQR 248
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ LH+P+QSGS+ VL M R+YT+ F + L E+ P + I +D+I GFPGET
Sbjct: 249 SDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLQRLREVFPELAITSDVIVGFPGET 308
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E+F +T + I+E +F ++H+ + R GTPAARM +V V +R L ++ +
Sbjct: 309 EEEFMETYHFIREQRFSELHVFPYSKRTGTPAARMPNQVDEEVKNERVHRLIALSDQLAK 368
Query: 307 YLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG+V + E + G++ +G+T Y++V P+T M+G VKIT G
Sbjct: 369 EYASQFEGQVLEVIPEERDKENPESGLY-IGYTDNYLKVKFPATEEMVGEIVKVKITKAG 427
Query: 361 RWSVFGEVIKILNQVDDKIASNRRISS 387
GE +++ V D I + ++SS
Sbjct: 428 YPYNEGEFVRV---VTDDIPQSVKLSS 451
>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
coelicolor A3(2)]
gi|81344644|sp|O69963.1|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
A3(2)]
Length = 505
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 259 -IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV++R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|381210399|ref|ZP_09917470.1| hypothetical protein LGrbi_10776 [Lentibacillus sp. Grbi]
Length = 450
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 188/380 (49%), Gaps = 36/380 (9%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ E+ GV IVG Q ++++ +EE K E ++ +
Sbjct: 73 ICVTGCYAQTSPGEIMEIPGVDVIVGTQNRKKMIDYIEEHQKTREPVNGVTNIMKNRVFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+D+P+ ++ L I GC CT+C +RG L S E+++ + + ++ G KE
Sbjct: 133 EMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWSRGLLRSRDPENVIKQAQNLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-- 184
+ L+ T YG D+ N LL + E+ +G +RI I + + ++ +
Sbjct: 192 IVLTGIHTAGYGEDMNDYNFAKLLQELETEV--EGLKRIRISSIEASQITDEVIDVLDKS 249
Query: 185 --VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
++RH LH+P+Q+GSD VL M R+Y+ +R VD + +PG+ I +D+I G
Sbjct: 250 EKIVRH------LHIPLQAGSDTVLHRMRRKYSTDYYRQKVDKIRRALPGLAITSDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRELT 298
FPGET+E+F +T N ++E + ++H+ F R GTPAA M A VK R EL+
Sbjct: 304 FPGETEEEFMETYNFVQEIGYSELHVFPFSRRTGTPAAHMDDQVDADVKNERVNRMIELS 363
Query: 299 SVFEAFTPYLGMEGRV------ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+ A G E V E + TE + L G+T Y++V T +++G
Sbjct: 364 NQL-AKEYASGYEDEVLEVIPEEHVNETEESV----LEGYTDNYLKVRFNGTKDLIGQIV 418
Query: 353 LVKITSVGRWSVFGEVIKIL 372
VK+T G G ++++
Sbjct: 419 RVKVTESGYPYNKGAFVRVM 438
>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisB18]
gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisB18]
Length = 473
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 184/369 (49%), Gaps = 19/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH---EVRLLHRKKLPA 68
+ VAGCV Q G+ ++ V +V G Q + +++ E +G E K
Sbjct: 83 IAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARGGRALETEFPVDDKFGF 142
Query: 69 LDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P+ +R + + GC CT+C + RG S V+ +V VR + +GV
Sbjct: 143 LPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRPVDKIVEDVRRLADNGV 202
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLRIGMTNPPFILEHLKEI 182
+E+ L ++ AY D P L A++ A++P G LR ++P + + L +
Sbjct: 203 REITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLRYSTSHPRDVDQSLIDA 260
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
L P + F+H+PVQSGSDA+L+AMNR+++ D+R +VD P + ++D I G
Sbjct: 261 HRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRFRSANPAIAFSSDFIVG 318
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVF 301
FPGETDEDF T+ L+ + + + ++ PRPGTPAA +++ V +AV+ +R L +
Sbjct: 319 FPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETVSAAVMDERLVRLQELI 378
Query: 302 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
++ G + A + +VG T V + +++G V+I S+
Sbjct: 379 DSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMAAPDIIGQVLPVRIDSL 438
Query: 360 GRWSVFGEV 368
R+S+ GE+
Sbjct: 439 ERYSLIGEL 447
>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Clostridium ultunense Esp]
Length = 443
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 34/369 (9%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLL 61
K+ + V GC Q S + E+ GV IV G Q DR+++ VEE ++
Sbjct: 67 KNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAVANIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+K+ L +P K L I GC CT+C A+G S ES++ + RT+
Sbjct: 127 KQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQARTLA 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
A+G +E+ L+ TG YG D+ +LP LL + E+ +G +RI I E
Sbjct: 186 ANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIGE--- 239
Query: 181 EIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ EV R+ P + LH+P+Q+G D +L +M+R+YT + ++ ++ + E +P + I TD+
Sbjct: 240 EMIEVFRNNPKMCRHLHIPLQAGDDTILKSMHRKYTTAQYKEKIEKIKEALPHVAITTDV 299
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR----- 293
I GFPGET+E F T + I+E F ++H+ + R GTPAAR +VP V K+R
Sbjct: 300 IVGFPGETEEMFQNTYDYIREIGFAELHVFPYSKRTGTPAARFPNQVPEEVKKERVDRLL 359
Query: 294 --SRELTSVFEAFTPYLGMEGRVERIWITEIAADGI----HLVGHTKGYVQVLVPSTGNM 347
+RELT + EG V + I E DG +VG++ Y+++ + ++
Sbjct: 360 ELNRELTLRYAK-----KFEGEVLEV-IPEEYYDGDPKSGKVVGYSDNYLRIAFMGSRDL 413
Query: 348 LGTSALVKI 356
G V++
Sbjct: 414 FGKVCRVRL 422
>gi|408826446|ref|ZP_11211336.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
somaliensis DSM 40738]
Length = 480
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 155/308 (50%), Gaps = 13/308 (4%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
AK + + V GC+ Q RD +K V +V G I R+ ++E E ++
Sbjct: 56 AKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGRLPVLLERARVREEAQVEI 115
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 116 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 175
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+A+GV E+ L ++ AYG DIG LL A +G +R +P +
Sbjct: 176 VAEGVSEITLLGQNVNAYGSDIGDREAFGKLLRACGG---IEGLERVRFTSPHPRDFTDD 232
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TD
Sbjct: 233 V--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIEKVRAAIPHAAISTD 290
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
II GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ +VP VV+ R L
Sbjct: 291 IIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMEGQVPKEVVQARYERL 350
Query: 298 TSVFEAFT 305
++ E +
Sbjct: 351 VALQEEIS 358
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 185/368 (50%), Gaps = 20/368 (5%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + K V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKATVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ VR + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEVRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+YT + +V + + +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIPNVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L +E +F + PR GTPAA+MK +P V K+R + L + F+
Sbjct: 379 QFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDNIPMEVKKERLQRLNELVNEFS--- 435
Query: 309 GMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ + I E+ DG L G+T+ V + +++G VKIT W
Sbjct: 436 AKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKSVIGQLVKVKITEAKTW 495
Query: 363 SVFGEVIK 370
S+ GE+++
Sbjct: 496 SLNGELVE 503
>gi|418620032|ref|ZP_13182843.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374823595|gb|EHR87590.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 448
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 187/377 (49%), Gaps = 25/377 (6%)
Query: 17 VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q +++ +++ + + ++ + L
Sbjct: 75 VTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDQFREERQPINGVGNIMKNRTYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S E +V + ++ G KE+
Sbjct: 135 DVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVQSGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILEHLKEIAE 184
L+ TG YG+D+ NL LL + E+ DG +RI +++ LK +
Sbjct: 194 LTGIHTGGYGQDLKNYNLAQLLRDL-EEI--DGLERIRISSIEASQLTDEVIDVLKNSNK 250
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V+RH LHVP+QSGSD VL M R+YT+ F + L + +P + + +D+I GFP
Sbjct: 251 VVRH------LHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLHDALPDLAVTSDVIVGFP 304
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+E+F +T + I ++KF ++H+ + R GTPAARM ++ ++ +R +L ++ +
Sbjct: 305 GETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGNQIDESIKNERVHKLIALSDQ 364
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
E V + E+ LVG+ Y++V + +++G VKI
Sbjct: 365 LAKEYASKFENEVLEVIPEEVGETKNTLVGYADNYMKVEFEGSEDLIGEIVKVKINKADY 424
Query: 362 WSVFGEVIKILNQVDDK 378
G ++I+N +K
Sbjct: 425 PINIGSAVRIVNHATNK 441
>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
gi|418045000|ref|ZP_12683096.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|14916854|sp|Q9WZT7.1|MTAB_THEMA RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678082|gb|EHA61229.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 434
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 192/369 (52%), Gaps = 31/369 (8%)
Query: 9 KSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
K+AK +++ GC Q S D K L ++G+ + +V+ + +L G + ++ P
Sbjct: 68 KNAK--IILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVSEPGRP 124
Query: 68 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD 123
+ KV+ ++ + + GC CTYC + ARG + S +E ++
Sbjct: 125 VYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMK 182
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + + + +
Sbjct: 183 GYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDEI--VK 237
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII GF
Sbjct: 238 AFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDIIVGF 297
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVVKKRSR 295
PGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+K++++
Sbjct: 298 PGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLKEKAK 357
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+++ + +G E +V W G+ L G+ + YV+ GN +G V+
Sbjct: 358 DVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVKHEF--VGNRVGEFHSVR 409
Query: 356 ITSVGRWSV 364
+ S+ V
Sbjct: 410 VKSLSEEGV 418
>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus inulinus CASD]
Length = 494
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 165/338 (48%), Gaps = 8/338 (2%)
Query: 36 IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGAC 93
I G I R+ ++++E L E V + ++ +LP+ RR F + I GC C
Sbjct: 150 IFGTHNIHRLPQLLKEALFSKEMVVEVWSKEGDIVENLPQSRRGHFQAWVNIMYGCDKFC 209
Query: 94 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153
TYC + RG S E +V VR + G KE+ L ++ AYG+D+ L +
Sbjct: 210 TYCIVPYTRGKERSRHPEEIVQEVRELARQGYKEITLLGQNVNAYGKDLPDLENYGLGNL 269
Query: 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 213
+ E+ G +R ++P +HL E+ + C + +H+PVQSGS +L M R
Sbjct: 270 MDEIRQIGIPRVRFTTSHPKDFDDHLIEVLAKGGNLCEH--IHLPVQSGSSDILKIMGRG 327
Query: 214 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273
YT + + + + VP TDII GFP ETDE F +T++L++E +F + P
Sbjct: 328 YTRERYLELFHKIKDAVPNASFTTDIIVGFPNETDEQFEETLSLVRECEFDGGFTFIYSP 387
Query: 274 RPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHL 329
R GTPAARMK +P V K+R + L + + F+ + VE + E + L
Sbjct: 388 RAGTPAARMKDNIPMDVKKERLQRLNKLMDEFSAKSNAKYQDQTVEVLVEGESRKNPEVL 447
Query: 330 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 367
GHT+ V +++G VKIT+ WS+ GE
Sbjct: 448 SGHTRTNKVVNFRGPKSLIGELVKVKITNAKMWSLNGE 485
>gi|228476133|ref|ZP_04060841.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|314936303|ref|ZP_07843650.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
gi|228269956|gb|EEK11436.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|313654922|gb|EFS18667.1| Fe-S oxidoreductase [Staphylococcus hominis subsp. hominis C80]
Length = 448
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 187/377 (49%), Gaps = 25/377 (6%)
Query: 17 VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q +++ +++ + + ++ + L
Sbjct: 75 VTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDQFREERQPINGVGNIMKNRTYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S E +V + ++ G KE+
Sbjct: 135 DVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVQSGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILEHLKEIAE 184
L+ TG YG+D+ NL LL + E+ DG +RI +++ LK +
Sbjct: 194 LTGIHTGGYGQDLKNYNLAQLLRDL-EEI--DGLERIRISSIEASQLTDEVIDVLKNSNK 250
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V+RH LHVP+QSGSD VL M R+YT+ F + L + +P + + +D+I GFP
Sbjct: 251 VVRH------LHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLHDALPDLAVTSDVIVGFP 304
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+E+F +T + I ++KF ++H+ + R GTPAARM ++ ++ +R +L ++ +
Sbjct: 305 GETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGDQIDESIKNERVHKLIALSDQ 364
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
E V + E+ LVG+ Y++V + +++G VKI
Sbjct: 365 LAKEYASKFENEVLEVIPEEVGETKNTLVGYADNYMKVEFEGSEDLIGEIVKVKINKADY 424
Query: 362 WSVFGEVIKILNQVDDK 378
G ++I+N +K
Sbjct: 425 PINIGSAVRIVNHATNK 441
>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
Length = 447
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 191/383 (49%), Gaps = 28/383 (7%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K KSA LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ +G++V +
Sbjct: 73 KQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-VATE 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
D+ K RR+ + +NV GC C+YC + RG S T E++ + T+
Sbjct: 132 PIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEMETLA 190
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPP 173
A G +EV L ++ AYGRD+ + P L V ++P G +R ++P
Sbjct: 191 AQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATSHPR 248
Query: 174 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L K AE+ P V H+P QSG + +L AM+R YT +R +VD + +P
Sbjct: 249 YFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKAMSRGYTHEKYRRIVDKIRHYLPD 305
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 291
I+ D I FPGET+E F T+ L+ + +F Q++ + + PRPGTPAA + S VK
Sbjct: 306 AAISADAIVAFPGETEEQFQNTLKLVDDVEFDQLNTAAYSPRPGTPAANWEDQLSDEVKS 365
Query: 292 ---KRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTK-GYVQVLVPSTGN 346
+R L S A ++ RVE + + + D ++G T+ +
Sbjct: 366 DRLQRLNHLVSTSAAARSQRYLD-RVEEVLVEGQNPKDQSQVMGRTRTNRLTFFNGDIEQ 424
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
+ G VKIT V +S+ GE +
Sbjct: 425 LYGKQVSVKITDVRAFSLTGEKV 447
>gi|403386752|ref|ZP_10928809.1| MiaB-like tRNA modifying protein [Clostridium sp. JC122]
Length = 434
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 192/375 (51%), Gaps = 21/375 (5%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVR 59
A+ K+ + + V GC Q S ++ ++EGV +V G + +V V E + EV
Sbjct: 63 ARRKNPEAIIAVVGCYSQIASEEISKIEGVDVVLGTKNKGDIVYYVNRARAEKKQFVEVN 122
Query: 60 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+L KK L + + + +K L I GC C+YC ARG + S + ++ VR
Sbjct: 123 DVLKNKKFEELKIEEYQ-DKTRAFLKIQDGCNQFCSYCLIPFARGAVCSKNPDLILEEVR 181
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 177
+ ++G KE+ LS +YG D+ + ++ ++ E+ +G +RIG +P F +
Sbjct: 182 QLASNGFKEIILSGIHIASYGVDLDNDWSLV--KVLEEINKIEGIERIRIGSIDPTFFTD 239
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ E L C + H+ +QSGS+A L MNR Y D++ VV+ L + + + I T
Sbjct: 240 GVIEKITSLEKLCPH--FHLSLQSGSNATLKRMNRHYNAEDYKHVVNNLRKYIENVSITT 297
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
D+I GFPGE++++F +T +++ K ++H+ ++ PR GT AA+M +V + ++RS
Sbjct: 298 DVIVGFPGESEKEFEETYKFLQDIKLSKIHVFKYSPRSGTKAAKMMLQVDGNIKEQRSEN 357
Query: 297 LTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
L + + + G +V ++ E+ H +G+T Y++V+V S + G
Sbjct: 358 LIELNLNLEKDFMEKFKGKSMKV--LFEEEMKNKKNHYIGYTPNYMKVIVKSAEKLDGKI 415
Query: 352 ALVKITSVGRWSVFG 366
VK+ V + ++ G
Sbjct: 416 LEVKLLEVEKENMVG 430
>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
variabilis ATCC 29413]
gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
29413]
Length = 454
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 187/381 (49%), Gaps = 28/381 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEAVHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ RR+ V +NV GC CTYC + RG S T E++ + + G KE+
Sbjct: 139 TQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEMEELGRQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L + + V ++P G +R ++P + E L K
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATSHPRYFTERLIK 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S K +R
Sbjct: 313 VGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEETKSDRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALV 354
L +V A M GR+E + + E D ++G T+G N L G V
Sbjct: 373 LVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTRGNRLTFFKGDINELKGQLVKV 431
Query: 355 KITSVGRWSVFGEVIKILNQV 375
KI V +S+ GE I+I V
Sbjct: 432 KINEVRAFSLTGEPIEIRQAV 452
>gi|335040087|ref|ZP_08533225.1| RNA modification enzyme, MiaB family [Caldalkalibacillus thermarum
TA2.A1]
gi|334180051|gb|EGL82678.1| RNA modification enzyme, MiaB family [Caldalkalibacillus thermarum
TA2.A1]
Length = 444
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 186/375 (49%), Gaps = 34/375 (9%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S +++ +EGV IV G Q ++++ +E+ + E ++ +
Sbjct: 73 ICVTGCYAQTSPKEVMAIEGVDIVIGTQGRSKIIDYIEQYRREREPINAVGNIMKTRTFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P + L I GC CT+C ARG L S E+++ + R ++A G KE
Sbjct: 133 ELDVPTFS-ERTRAYLKIQEGCNNFCTFCIIPWARGLLRSRKPENVLNQARKLVASGYKE 191
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD-----GSTMLRIGMTNPPFILEH---- 178
+ L+ T YG D L + A+L D G LRI I +
Sbjct: 192 IVLTGIHTAGYGED-------LEDYSFAQLLWDLEQIEGLERLRISSIEASQITDDVINV 244
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L+ +++ RH LH+P+Q+G D VL M R+YT ++F+ ++ + + +P + +D
Sbjct: 245 LQRSSKICRH------LHIPLQAGDDTVLKRMRRKYTTAEFKAKIEEVRQALPNFALTSD 298
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
+I GFPGET+E F T + I++ +F ++H+ + PR GTPAARMK +V V ++R + L
Sbjct: 299 VIVGFPGETEEQFMNTYHFIRDLRFAELHVFPYSPRTGTPAARMKDQVDPDVKQERVQRL 358
Query: 298 TSVFEAFTPYLG--MEGRV-ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
++ + EG++ E I + LVG+T Y++V+ +++G V
Sbjct: 359 IALSVQLSKEYASQFEGQILEVIPEQHYEQNPDLLVGYTDNYLRVVFKGDDSLMGQLVKV 418
Query: 355 KITSVGRWSVFGEVI 369
+I G G +I
Sbjct: 419 QIDRAGYPYNLGSMI 433
>gi|401565221|ref|ZP_10806071.1| MiaB-like protein [Selenomonas sp. FOBRC6]
gi|400188062|gb|EJO22241.1| MiaB-like protein [Selenomonas sp. FOBRC6]
Length = 430
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 187/372 (50%), Gaps = 30/372 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-----------EVRLL 61
+ V GC Q +++ LEGV +V G + R+V+ VEE L+ + R+
Sbjct: 72 IAVTGCYAQVAPEEIRALEGVRVVIGTKARARIVDYVEEALRADTGATGTITDIMQARVF 131
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P LP R L I GC CT+C +ARG + S + ++ ++ +
Sbjct: 132 --EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVAREMKLLT 185
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ P L +A L LR+G +E +
Sbjct: 186 EAGFYEVVLTGIHLGAYGIDLAAR-PTLADACRTALAEKSLRRLRLGSLES---VELSAD 241
Query: 182 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ E++R P + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I+TDII
Sbjct: 242 LLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAHLLEEVRAAVPGVAISTDII 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF ++ +++ F ++H+ + R GTPAAR +VP V K+R+ + +
Sbjct: 302 VGFPGETEEDFAVGLDFVRQMGFARMHVFPYSARKGTPAARRSDQVPPTVRKERAARMQA 361
Query: 300 VFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ + + G V + E DG+ G T+ Y++V + G A +++T
Sbjct: 362 LADELAEEYHRAALGSVADVLF-ETTEDGV-TDGLTETYIRVYTDAPVTR-GQIAPLRLT 418
Query: 358 SVGRWSVFGEVI 369
+ R V+GE+I
Sbjct: 419 HLYRDGVWGEMI 430
>gi|302812392|ref|XP_002987883.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
gi|302815858|ref|XP_002989609.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
gi|302815944|ref|XP_002989652.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
gi|300142580|gb|EFJ09279.1| hypothetical protein SELMODRAFT_8456 [Selaginella moellendorffii]
gi|300142623|gb|EFJ09322.1| hypothetical protein SELMODRAFT_8455 [Selaginella moellendorffii]
gi|300144272|gb|EFJ10957.1| hypothetical protein SELMODRAFT_8459 [Selaginella moellendorffii]
Length = 91
Score = 152 bits (384), Expect = 4e-34, Method: Composition-based stats.
Identities = 67/91 (73%), Positives = 78/91 (85%)
Query: 217 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 276
S+FR +VDTL LVP + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPG
Sbjct: 1 SEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPG 60
Query: 277 TPAARMKKVPSAVVKKRSRELTSVFEAFTPY 307
TPAA MK+VP+ VKKRSR LTS+FE+FTPY
Sbjct: 61 TPAALMKRVPTLEVKKRSRSLTSLFESFTPY 91
>gi|407474276|ref|YP_006788676.1| methylthiotransferase, MiaB family [Clostridium acidurici 9a]
gi|407050784|gb|AFS78829.1| methylthiotransferase, MiaB family [Clostridium acidurici 9a]
Length = 434
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 195/385 (50%), Gaps = 32/385 (8%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
I +C+ + V+A GC Q S ++ ++E V ++ G ++VE+ EE ++
Sbjct: 61 FIRRCRGKNENAVIAVVGCYSQVSPEEVAKIEEVDVILGTDNRSKIVEICEEFIQNK--- 117
Query: 60 LLHRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 109
+R L + D+ K+R K L I GC C+YC +ARG + S
Sbjct: 118 --NRVNLVS-DIMKIRNFEEIGIEEVEGKTRAFLKIQDGCNQYCSYCIIPYARGSIRSRE 174
Query: 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 169
++++V V + +G KEV L+ +YG+D+G L+ I +G +R+G
Sbjct: 175 LDNIVMEVERLAKNGFKEVVLTGIHISSYGKDLGT--EGLIEVIERINRVNGIERIRLGS 232
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
P + ++ E L C + H+ +QSGSD VL MNR+YT S++R +V +
Sbjct: 233 LEPTLVTDNFMERLSKLDKLC--NHFHLSLQSGSDTVLKRMNRKYTSSEYREIVKIIRGH 290
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289
+ + TDII GFPGET+E+F +T + IKE F +VH+ Q+ PR GTPAA+MK+ +
Sbjct: 291 MDNVAFTTDIIVGFPGETEEEFKETFDFIKEIGFSKVHVFQYSPRKGTPAAKMKEQINGN 350
Query: 290 VK-KRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 343
+K RS++L + E T ++G + V ++ + ++ G+T Y++VL P
Sbjct: 351 IKHDRSKKLIELSEYLTKEFNKMFIGKDMDV--LFEEKSKLKKGYIEGYTTNYIRVLAPG 408
Query: 344 TGNMLGTSALVKITSVGRWSVFGEV 368
N+ G V I + S+ G +
Sbjct: 409 DDNLEGQIQSVNIECLHEDSLIGNM 433
>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8802]
gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
Length = 446
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 185/374 (49%), Gaps = 26/374 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V + D+
Sbjct: 80 LIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEPIHIIE-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC C+YC + RG S T E+++ + + G KEV
Sbjct: 139 TKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEMELLGKQGYKEVT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G + L + + G +R ++P + E L
Sbjct: 198 LLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHPRYFTERLIAAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L C + H+P QSG + +L AM R YT +R ++D + + +P I+ D I GF
Sbjct: 258 QELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPDASISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSVF- 301
PGET+E F T+NL+++ F Q++ + + PRPGTPAA S VK R + L +
Sbjct: 316 PGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVA 375
Query: 302 ----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALVK 355
E YL GR+E + + + D ++G T+G N L G VK
Sbjct: 376 QKAAERSQRYL---GRIEEVLVEDQNPKDSTQVMGRTRGNRLTFFKGDINQLKGRLIKVK 432
Query: 356 ITSVGRWSVFGEVI 369
IT V +S+ GE++
Sbjct: 433 ITEVRAFSLTGEIV 446
>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 432
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 182/370 (49%), Gaps = 38/370 (10%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------GHEVRLLHRK 64
+ V GC Q ++K +EGV +V G ++ R+VE VE+ + G+ + +
Sbjct: 73 IAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVGNIMEAHEFE 132
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+P D+P+ R L I GC C+YC +ARG + S ++ + + ++ G
Sbjct: 133 DIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHSEAKKLVDAG 188
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP----PFILEHLK 180
KE+ L+ GAYG+D+ + L +A L +G LR+G P + ++
Sbjct: 189 FKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIELSPDLFALIR 247
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E H LH+P+Q+GSDAVL MNR Y ++F +++ + VPG+ ++TDII
Sbjct: 248 EDDRFCAH------LHLPLQAGSDAVLKDMNRHYDTAEFGRLIEQVEREVPGVAVSTDII 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTS 299
GFPGET+E F ++ +++ F ++H+ + R GTPAA R ++P V K R++ +
Sbjct: 302 VGFPGETEEQFTDSLKFVEKMNFSRMHVFPYSKRSGTPAAERKDQIPDPVKKDRAKRMQE 361
Query: 300 VF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV--PSTGNMLGTSA 352
+ E +LG +V + E DG+ G T Y++V P T +
Sbjct: 362 LANRKTEEFHQHFLGQTKQV----LFETNNDGV-TDGLTDNYIRVYTDSPVTCGEIYQVK 416
Query: 353 LVKITSVGRW 362
L ++ G W
Sbjct: 417 LERLYQDGVW 426
>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 438
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 20/377 (5%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 60
K K+ L V GC+ Q ++ K + IV G I + E++EE +GH ++
Sbjct: 68 KRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHTHQISVD 127
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ LP L+ F +PI GC CTYC H RG S VE++V V +
Sbjct: 128 MDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVTDL 185
Query: 121 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
A G KE+ L ++ +YG D G + L++A+ +P G +R ++P + +
Sbjct: 186 GAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHPQDMTKS 242
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + + + TD
Sbjct: 243 M--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVVVTTD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
II GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P V + R + L
Sbjct: 301 IIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEVKRVRLQTL 360
Query: 298 TSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LGTSAL 353
V + L MEG+V I + + D G T G VL P ++ +G +
Sbjct: 361 MDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIGETVP 420
Query: 354 VKITSVGRWSVFGEVIK 370
I W +G + K
Sbjct: 421 AYIDKAQTWVCYGTIQK 437
>gi|422343558|ref|ZP_16424486.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
gi|355378865|gb|EHG26045.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
Length = 435
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 182/367 (49%), Gaps = 31/367 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-----------EVRLL 61
+ VAGC Q +++ L GV +V G ++ ++V+ VE L+ + + R+
Sbjct: 72 IAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGVIGTITDIMQARVF 131
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P +P R L I GC CT+C +ARG + S + ++ + +
Sbjct: 132 --EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVAREMHLLT 185
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ P L +A L LR+G +E +
Sbjct: 186 EAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLGSLES---VELSAD 241
Query: 182 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ + VPG+ ++TDII
Sbjct: 242 LLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRAVPGVAVSTDII 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTS 299
GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP AV K+R+ + +
Sbjct: 302 VGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPAVRKERAARMQA 361
Query: 300 VFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VPSTGNMLGTSALVK 355
+ E + G V + E A DG+ G T+ Y++V P L LV+
Sbjct: 362 LAEELAQDYHRAALGSVTEVLF-ETAEDGV-TNGLTETYIRVYTDAPVARGALVPMRLVR 419
Query: 356 ITSVGRW 362
+ G W
Sbjct: 420 LYRDGVW 426
>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
Length = 514
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 180/375 (48%), Gaps = 26/375 (6%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK + V ++ G I R+ +++E E V + ++
Sbjct: 143 LGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKEMVVEVWSKEGDV 202
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G +E
Sbjct: 203 IENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRQLAAQGYQE 262
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI----A 183
+ L ++ AYG+D +L L ++ E+ +R ++P +HL E+
Sbjct: 263 ITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDFDDHLIEVLAKGG 321
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+L H +H+PVQSGS VL M R+YT + +V + +P TDII G+
Sbjct: 322 NLLEH------IHLPVQSGSTDVLKIMARKYTREQYLELVRKIRAAIPNATFTTDIIVGY 375
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF- 301
P ETDE F +T++L KE + + + PR GTPAA+MK VP V K+R + L ++
Sbjct: 376 PNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVN 435
Query: 302 ----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
EA Y G VE + E + L G+T+ V + +G VKIT
Sbjct: 436 EMSAEAMKKYHGQ--TVEVLVEGESKNNPEVLAGYTRKNKLVNFKGPKSAIGKIVSVKIT 493
Query: 358 SVGRWSVFGEVIKIL 372
WS+ GE+++ L
Sbjct: 494 DAKTWSLNGEMVEEL 508
>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
Length = 508
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 81 KKAGRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ADGV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 201 VADGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII
Sbjct: 259 -IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAISTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQIPKKVVQERYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
Length = 472
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 182/367 (49%), Gaps = 31/367 (8%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-----------EVRLL 61
+ VAGC Q +++ L GV +V G ++ ++V+ VE L+ + + R+
Sbjct: 109 IAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGVIGAITDIMQARVF 168
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P +P R L I GC CT+C +ARG + S + ++ + +
Sbjct: 169 --EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVAREMHLLT 222
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ P L +A L LR+G +E +
Sbjct: 223 EAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLGSLES---VELSAD 278
Query: 182 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ + VPG+ ++TDII
Sbjct: 279 LLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRAVPGVAVSTDII 338
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTS 299
GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP AV K+R+ + +
Sbjct: 339 VGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPAVRKERAARMQA 398
Query: 300 VFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VPSTGNMLGTSALVK 355
+ E + G V + E A DG+ G T+ Y++V P L LV+
Sbjct: 399 LAEELAQDYHRAALGSVTEVLF-ETAEDGV-TNGLTETYIRVYTDAPVARGALVPMRLVR 456
Query: 356 ITSVGRW 362
+ G W
Sbjct: 457 LYRDGVW 463
>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
Length = 452
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 194/387 (50%), Gaps = 32/387 (8%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K L++AGCV Q G L+ + + +V G Q +R+ E++E+ +G++V
Sbjct: 72 KHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVATEP 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ D+ K RR+ V +NV GC CTYC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEMEELG 189
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPP 173
G KE+ L ++ AYGRD+ + P L + V ++P G LR ++P
Sbjct: 190 RLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATSHPR 247
Query: 174 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L K AE+ P V H+P QSG + +L AM+R YT +R +++T+ E +P
Sbjct: 248 YFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSRGYTHEKYRRIINTVREYMPD 304
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 291
I+ D I GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + +VP V
Sbjct: 305 ASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAALWENQVPDDVKA 364
Query: 292 KRSRELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKG-YVQVLVPST 344
R ++L + E Y GR+E + + E D ++G T+G + V +
Sbjct: 365 DRLQQLNHLVGVKAAERSQRYF---GRIEEVLVEGENPRDPSQVMGRTRGNRLTFFVGNL 421
Query: 345 GNMLGTSALVKITSVGRWSVFGEVIKI 371
+ G VK+T V +S+ E I++
Sbjct: 422 AELKGKVLKVKVTEVRPFSLTAEAIEL 448
>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
Length = 447
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 185/372 (49%), Gaps = 22/372 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
L V GC+PQ E++ IVG + ++ E +G V + ++
Sbjct: 82 LGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVVAVSPEEQEIVE 141
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R ++ +PI GC CTYC + RG S E ++ V+ + +G +E++
Sbjct: 142 GLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVKELAKEGYREIF 201
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHL-KEIAEVLR 187
L ++ AYG+ G+ P+ ++ +L +G +R ++P E L + +AE+
Sbjct: 202 LLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGEDLIRAVAEL-- 257
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V H+PVQ+GSD +L M R YT D+ +V + E++P +TDI+ GFPGET
Sbjct: 258 -PKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIREVLPQASFSTDIMVGFPGET 316
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+EDF QT+ L++E F Q I + PRPGTPAA +VP V +R + L ++ +A +
Sbjct: 317 EEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVPHEVKVERIKRLLALQQAIS- 375
Query: 307 YLGMEGRVERIWITEIAADGI------HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
R E + E+ +G L G T+ Y V++ T + G V+IT+
Sbjct: 376 --RERNRAEVGKVHEVLVEGPSRTNPDRLEGRTRTYKTVILDGTPELTGKLVAVRITAGY 433
Query: 361 RWSVFGEVIKIL 372
+ G+V ++L
Sbjct: 434 LTHLEGKVEEVL 445
>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
Length = 707
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 190/381 (49%), Gaps = 35/381 (9%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ G++V + D+
Sbjct: 339 LIVAGCVAQQEGVKMLRRIPALDLVMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDI 397
Query: 72 PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR V + I+ GC CTYC + RG S +VES+V V + +G +EV L
Sbjct: 398 SKPRRQSQVCAWVNISYGCNERCTYCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTL 457
Query: 131 SSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNP----PFILEHLKEIAE 184
++ AYGRD+ V LL + A G +R +P P +++ E+
Sbjct: 458 LGQNIDAYGRDMRPRVTFAQLLRHVSA----TGIDRIRAITAHPRYWSPRVIQATAEL-- 511
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
P + + H+P Q+G D VL AM R YT +R +++ + E +P I D I GFP
Sbjct: 512 ----PNIMPYFHIPFQAGDDEVLKAMGRGYTAKRYRRIIEMIREYLPDAAITADAIVGFP 567
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS---- 299
GET+E F +T+ L++ + V+ + + PRP TPAA + +VP AV +R +
Sbjct: 568 GETEEQFQRTLELMEALQLDNVNTAAYSPRPFTPAASWENQVPEAVKMERLHRINELNMR 627
Query: 300 VFEAFTP-YLGMEGRVERIWITEIAADGIHL--VGHTKGYVQVLVPSTGNM---LGTSAL 353
+ +A + YL GR+E + + E+ L G T+ +V + G + G A
Sbjct: 628 IVDARSQRYL---GRIEEVLVEEVNPKSPELGVCGRTRTNKKVFFEAPGGIQRWRGRMAN 684
Query: 354 VKITSVGRWSVFGEVIKILNQ 374
V+IT +S+ GE++ Q
Sbjct: 685 VRITQARAYSLTGELVATCPQ 705
>gi|410659193|ref|YP_006911564.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Dehalobacter sp. DCA]
gi|410662178|ref|YP_006914549.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Dehalobacter sp. CF]
gi|409021548|gb|AFV03579.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Dehalobacter sp. DCA]
gi|409024534|gb|AFV06564.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Dehalobacter sp. CF]
Length = 483
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 44 RVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 103
R V+ EE++K E+ L+ + ++ +L I GC CTYC + RG
Sbjct: 163 RKVKSFEESVKYEELPLIKSE------------SRTRAMLKIQDGCSQFCTYCIVPYTRG 210
Query: 104 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPD 160
S E++ R ++ G KE+ L+ GA+GRD +NL +L++ +V +LP
Sbjct: 211 PSRSRDPENVYREARELLKAGYKEIVLTGIHIGAFGRDFTDKNMNLGLLVSELV-KLP-- 267
Query: 161 GSTMLRIGMTNP-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 219
G LR+G P F LE L+ IA + V H+P+QSGS+ +L MNR YT+ D+
Sbjct: 268 GMKRLRLGSIEPMEFSLELLEVIAA---NAAVCPHFHIPLQSGSNKILGKMNRPYTIEDY 324
Query: 220 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279
++ + VP IA+DI+ GFPGETD+D+ + I+ +F +H+ + RPGTPA
Sbjct: 325 AALLKQIRARVPDAAIASDIMVGFPGETDQDYQDGLRFIESCEFSGIHVFPYSRRPGTPA 384
Query: 280 ARM-KKVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGY 336
A M +++P+ + R REL + + + G+ + + + DG GHT+ Y
Sbjct: 385 ADMPEQIPNRIKTARVRELIQIGQKSRRKYERKFIGKQLEVLLENVDQDG-RARGHTRNY 443
Query: 337 VQVLVPST 344
+++ +PS+
Sbjct: 444 LELRIPSS 451
>gi|451817753|ref|YP_007453954.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783732|gb|AGF54700.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 467
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 187/383 (48%), Gaps = 24/383 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+I++ + + ++A GC Q ++ ++EGV +V G + +V + + + +
Sbjct: 92 IISRARRRNQEAIIAAVGCYSQVAPEEVAKIEGVDVVLGTRNKGDIVYYINKAKDEQKSQ 151
Query: 60 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
L L K+ L++ + + +K L I GC C YC + RG S E ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCVIPYTRGATCSKDPEKVL 210
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ +G +RIG P
Sbjct: 211 NEIKNLSQHGFKEIILSGIHTASYGVDLDGNITLI--TLLEEIEKLEGIERVRIGSIEPS 268
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + + + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 269 FFTDEVIGKIKDMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNKIRENLKDA 326
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGETDE+FN+T +K K + HI +F PR GT AA M ++ V K
Sbjct: 327 SITTDVIVGFPGETDEEFNETYEFLKRLKLTKTHIFKFSPRKGTKAADMTNQIDGTVKDK 386
Query: 293 RSRELTSVFEA----FTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GN 346
RS+ L + + F+ L G E ++ + E+ G+T+ YV+V +P+ N
Sbjct: 387 RSKTLIELNDKNEGDFSKSLIGRE--LDVLLEQEVTNKKDVFEGYTRNYVKVEIPNVDAN 444
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
M+G KI V G++I
Sbjct: 445 MIGKIITCKIEEANGEYVVGKLI 467
>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
owensensis OL]
gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
owensensis OL]
Length = 434
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 199/382 (52%), Gaps = 27/382 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S + +VV GC PQ +++++ + I+ G + ++V+ V+E L+ ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLE-------NK 115
Query: 64 KKLPALD-------LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVES 112
KK+ A+D +++ ++F E + I GC C+YC +ARG + S ++ES
Sbjct: 116 KKIVAIDEGYKRGTFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+ P
Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEP 234
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E I+ +L + LH+ +QSGSD +L MNR YT + ++ +VD + E
Sbjct: 235 LIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDD 292
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 291
+ TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ GT A M +V S +
Sbjct: 293 VAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKE 352
Query: 292 KRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML- 348
+RS+ + V ++ + G+ + I + + + G++ Y++ +V ++
Sbjct: 353 RRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVVRKNHFIVP 412
Query: 349 GTSALVKITSVGRWSVFGEVIK 370
G VKIT V GE+I+
Sbjct: 413 GEIYKVKITQAYEQYVKGEIIQ 434
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E V + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDFDDHLIDV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ + +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVKEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V T +G VKI WS
Sbjct: 437 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGTKEAVGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
Length = 447
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 30/377 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V ++ D+
Sbjct: 80 LIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVATEAVEIME-DI 138
Query: 72 PKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR+ K + + GC CTYC + RG S E++ + + G KEV L
Sbjct: 139 TKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMEDLGRQGYKEVTL 198
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-KE 181
++ AYGRD+ G N L + + V ++P G LR ++P + E L K
Sbjct: 199 LGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFATSHPRYFTERLIKA 256
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +P I D I
Sbjct: 257 CAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYMPDASITADAIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE----- 296
GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S VK +
Sbjct: 314 GFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEVKADRLQRINHV 373
Query: 297 -LTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKG-YVQVLVPSTGNMLGTSAL 353
T+ E Y GR E + + + D ++G T+G + + G
Sbjct: 374 VTTTAMERSQRYF---GRTEEVLVEVQNLKDSTQVMGRTRGNRLTFFKGDIAELAGKIVR 430
Query: 354 VKITSVGRWSVFGEVIK 370
VKIT + +S+ GE+++
Sbjct: 431 VKITDIRAFSLTGEMVE 447
>gi|442805578|ref|YP_007373727.1| 2-methylthioadenine synthetase MiaB [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741428|gb|AGC69117.1| 2-methylthioadenine synthetase MiaB [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 432
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 176/354 (49%), Gaps = 36/354 (10%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
+ GC Q ++ ++EGV++V G + +VE+VEE + KK+ L P
Sbjct: 73 IAAVGCYAQVAPEEVSKIEGVNLVIGNNRKSEIVELVEEVSRDE-------KKIEVL--P 123
Query: 73 KVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
++ E+ L I GC C+YC ARG + S ++ES++ R +
Sbjct: 124 GRELKEYEELWAGSYTGHTRAFLKIQDGCDQFCSYCIIPFARGRIRSRSMESIMDEARKL 183
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +G KE+ L+ +YG+D G LL+ I + + +R+G P ++ E +
Sbjct: 184 VDNGFKEIVLTGIHLTSYGKDTGKG--TLLDVIRELDKMERLSRIRLGSLEPLYMTEEMI 241
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
+ C + H+ +QSG D L+ MNR+YT +++R +V+ + + I TDI+
Sbjct: 242 REMSGIEKLCPH--FHLSLQSGCDETLARMNRKYTTTEYRGIVEKIRRYFEDVAITTDIM 299
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGETD +F +T ++ F Q HI Q+ R GT AA MK +VP V ++RS+ LT+
Sbjct: 300 TGFPGETDAEFRKTCEFVQSIGFSQAHIFQYSVRKGTKAAAMKDQVPPEVKEERSKILTA 359
Query: 300 V----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
+ AF GRV+ + E DG + GHT Y+ V V S N+ G
Sbjct: 360 ICNNSMRAFRE--NQIGRVKDVLFEE-KVDG-YYAGHTDNYIPVRVLSDENLSG 409
>gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
15579]
gi|187772089|gb|EDU35891.1| tRNA methylthiotransferase YqeV [Clostridium sporogenes ATCC 15579]
Length = 432
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 190/379 (50%), Gaps = 32/379 (8%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQ-------IDRVVEVVEETLKGHEVR 59
+++K + V GC Q ++ ++EGV +V G + I+R +E + ++ +V
Sbjct: 66 QNSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV- 124
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR
Sbjct: 125 -LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRK 182
Query: 120 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 183 LSKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIERIRIGSIDPTFFTE 239
Query: 178 HLKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + +
Sbjct: 240 E-----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLRTNIEAVS 294
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 293
I TDII GFPGET+E+FN+T +K+ K ++H+ +F PR T A +M+ +V + ++R
Sbjct: 295 ITTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATRAEKMENQVDGNIKEER 354
Query: 294 SRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
S ++ ++ +A M +E+ ++ E GI G+T Y+++ S ++ G
Sbjct: 355 SNKIINLDKALEKEF-MNKFIEKEMLVLYEQETKEKGI-FEGYTPNYIKIYAKSLKDITG 412
Query: 350 TSALVKITSVGRWSVFGEV 368
K+ V + + GE+
Sbjct: 413 EIISTKLKEVSKDFIKGEI 431
>gi|338731013|ref|YP_004660405.1| MiaB-like tRNA modifying protein [Thermotoga thermarum DSM 5069]
gi|335365364|gb|AEH51309.1| MiaB-like tRNA modifying enzyme [Thermotoga thermarum DSM 5069]
Length = 434
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 6/222 (2%)
Query: 83 LPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
+ I GC C+YC +ARG + S + +V V+ +++ G KE+ L + G YG+D
Sbjct: 144 VKIEDGCYEMCSYCIVPYARGQKIRSKPIHEVVDEVQKLVSSGYKEIVLVGVNLGKYGKD 203
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 201
G +L L+ + ++ +G +R+ N I E L E+ + C + LH+P+QS
Sbjct: 204 TGESLSKLIESCFNQV--NGEFRIRLSSINVQDIGEDLVEVFKRYNRLCPH--LHIPLQS 259
Query: 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261
GSD +LS MNR+Y +SDF VV+ E+ TDII GFPGET DF+QT+ +I++
Sbjct: 260 GSDRILSMMNRKYKVSDFLNVVEKFREINTDFSFTTDIIVGFPGETLGDFHQTLKVIEQV 319
Query: 262 KFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE 302
KF +VH +F PRPGTPA+ K++P ++R +EL + E
Sbjct: 320 KFTKVHAFRFSPRPGTPASSFDKQIPPKEKERRLKELKELSE 361
>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 437
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 37/307 (12%)
Query: 6 AKCKSAKKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
AK ++ K +V GC P+ L+E++ I G + ++V++VE+ ++G
Sbjct: 64 AKSRNPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG------ 115
Query: 62 HRKKLPALDLPKV-RRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSY 108
KLP L L + + N+F + L I GC C+YC ARG + S
Sbjct: 116 ---KLPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSE 172
Query: 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 166
E ++ +V+ +I G KE+ L+ G YG D+ ++L L+ IV ++P G LR
Sbjct: 173 KPEKVLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLR 229
Query: 167 IGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 225
I P +E E+ EV+ P + LH+P+QSGSD +L+ M R YT D++T+V+
Sbjct: 230 ISSVEP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVER 286
Query: 226 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 285
++ P + I TD++ GFPGET+EDF +T IKE+ F +H+ + PR GT A +MK
Sbjct: 287 ILSKNPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDS 346
Query: 286 PSAVVKK 292
S++ KK
Sbjct: 347 VSSLEKK 353
>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
Length = 452
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 187/382 (48%), Gaps = 26/382 (6%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 72 KHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIATEP 131
Query: 64 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ D+ K RR+ V + I GC C+YC RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMELLAK 190
Query: 123 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 174
G KEV L ++ AYGRD+ G + L + + V ++P G LR ++P +
Sbjct: 191 QGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSHPRY 248
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 249 FTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMPDAS 306
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-R 293
I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK R
Sbjct: 307 ISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVKSDR 366
Query: 294 SRELTSVFEAFTPYLGME--GRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---M 347
+ L + GR+E + + + D ++G T+G L GN +
Sbjct: 367 LQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRTQG--NRLTFCKGNIDEL 424
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
G V+IT V +S+ GE I
Sbjct: 425 KGQLIKVEITEVRAFSLTGEAI 446
>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 441
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 11/308 (3%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P R N + + I GC CTYC RG S ++ S++ V+ ++ +GV+E+
Sbjct: 139 DFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKERSRSMYSILEEVKKLVDEGVREIH 198
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE-IAEVLR 187
L ++ A+G+D PI + ++ E+ DG +R +P + + E +A++
Sbjct: 199 LLGQNVTAWGKDF--ERPIPFSELLYEVSKVDGVERIRFTTGHPKDLTDDTVEAMADI-- 254
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V + LH+P Q+GSD +L M+R+YT + ++ L E V + ++TDII GFP ET
Sbjct: 255 -PQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRLKEAVEDIALSTDIIVGFPTET 313
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DEDF T+++++E +F QV ++ PRPGTPAA M+ +VP V +R L + +A
Sbjct: 314 DEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQVPDEVKTERMSRLLELQKAIMG 373
Query: 307 YLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
L EG V+++ + E +G L+G T +LG V++ S +++
Sbjct: 374 KLSKRYEGTVQKVLVEEERGEGT-LIGRTTTNKWATFKGGRELLGKIVKVRVESASPFNL 432
Query: 365 FGEVIKIL 372
E+++++
Sbjct: 433 ECELLEVV 440
>gi|398781992|ref|ZP_10545860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
auratus AGR0001]
gi|396997054|gb|EJJ08029.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
auratus AGR0001]
Length = 495
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 71 KKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARIQEEAQVEI 130
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 131 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 190
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 191 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGLERVRFTSPHPRDFTDDV- 248
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TDII
Sbjct: 249 -IAAMAETPNVMPQLHMPLQSGSDRVLKAMRRSYRQERFLGILEKVRAAMPDAAISTDII 307
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M+ ++P AVV++R L +
Sbjct: 308 VGFPGETEEDFAQTLHTVRESRFAQAFTFQYSKRPGTPAADMEGQIPKAVVQERYERLVA 367
Query: 300 VFEAFT 305
+ E +
Sbjct: 368 LQEEIS 373
>gi|404370256|ref|ZP_10975579.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
gi|226913622|gb|EEH98823.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
Length = 434
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 187/364 (51%), Gaps = 34/364 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLHRKKLP 67
+ V GC Q +++ E+ GV +V G + VV V E + H +L KK
Sbjct: 72 VAVVGCYSQIAPKEVSEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQVHVEGVLKNKKFE 131
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L++ + + +K L I GC CTYC ++RG + S + ++ V + G KE
Sbjct: 132 ELNIEEYQ-DKTRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPKKVLEEVNKLAEHGFKE 190
Query: 128 VWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILEHLKE 181
+ LS T +YG D+ VNL ++ I +G +RIG P F ++E +K+
Sbjct: 191 IILSGIHTASYGLDLEGSVNLIDIIEEIE---KVEGIERIRIGSIEPAFFTPEVIEKIKK 247
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
++ H H+ +QSG DA L MNR YT ++ V+ L E +P + I TD+I
Sbjct: 248 FKKLCPH------FHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMPDVSITTDVIV 301
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+E+FN+T +K K + H+ ++ PR GT AA M+ ++ ++ +KRS+ L +
Sbjct: 302 GFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIKEKRSKLLIEL 361
Query: 301 F-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST-GNMLGTSAL 353
E ++G E ++ + E+ DGI+ G+T+ Y++V VP T ++ G
Sbjct: 362 SNKNEKEFIEKFIGKE--MDALIEAEVKGKDGIY-EGYTRNYIKVQVPCTCADVTGKIVD 418
Query: 354 VKIT 357
++IT
Sbjct: 419 IEIT 422
>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
Length = 421
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 155/300 (51%), Gaps = 4/300 (1%)
Query: 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 60
M + I KS K +VVAGC+ + E +V ++ ++ + ++ +
Sbjct: 61 MISRIEYFKSLNKKVVVAGCMAKALPKKIEYFSDCMVLPREAQNSGNILFKKFIENKEKT 120
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L L K+ + +PI+ GCLG C+YC K ARG L SY + +V +
Sbjct: 121 NFENNLSE-KLNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLESYDRKLIVKKAMEF 179
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
I G K + ++++DT YG D NL L++ I +E+P + +RIGM + F L
Sbjct: 180 INSGTKCLLITAQDTACYGYDNNDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPILD 236
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ E + V FLH+P+QSG + VL M R YT+ +F +V++ + + TD+I
Sbjct: 237 ELVESFKSEKVVKFLHLPIQSGDNQVLKDMGRNYTVDEFISVLNEFKRKIKDLNFTTDVI 296
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFP ET++ FN T+ ++K+ K H +++ R T AA +K+V + + K+RS L +
Sbjct: 297 VGFPSETEDAFNNTLEVLKKIKPDFTHGAKYSQRKYTKAALLKQVDTKIRKERSEILNEL 356
>gi|345848843|ref|ZP_08801861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
gi|345639713|gb|EGX61202.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
Length = 495
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 161/325 (49%), Gaps = 15/325 (4%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + + V GC+ Q RD ++ V +V G I ++ ++E E ++
Sbjct: 72 KTRRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 131
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ V ++
Sbjct: 132 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEVEALV 191
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
A+GV E+ L ++ AYG DIG LL A A DG +R +P + +
Sbjct: 192 AEGVSEITLLGQNVNAYGSDIGDREAFGKLLRACGA---IDGLERVRFTSPHPRDFTDDV 248
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDI
Sbjct: 249 --IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDI 306
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R L
Sbjct: 307 IVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMEDQIPKQVVQARYERLV 366
Query: 299 SVFE--AFTPYLGMEGRVERIWITE 321
++ E ++ G GR + + E
Sbjct: 367 ALQEEISWEENRGQVGRTLELMVAE 391
>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 430
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 179/342 (52%), Gaps = 30/342 (8%)
Query: 15 LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-----GHEVRLLHRK--- 64
+ V GC Q + D +K +EGV +V G ++ +V+ VE+ ++ G ++ K
Sbjct: 72 VAVCGCYAQVAPDEIKAIEGVRVVLGTKERAHIVDYVEKAMQEDGIQGTITDIMKAKTFE 131
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+P D P+ R L I GC C+YC +ARG + S E + ++A G
Sbjct: 132 DIPLYDSPERTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRLPEHVHREAEKLVAMG 187
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
KE+ L+ GAYGRD+ ++ L +A L G LR+G +E E+
Sbjct: 188 FKEIVLTGIHLGAYGRDLPGDI-TLADACREVLSVPGLKRLRLGSLES---IELSPELFA 243
Query: 185 VLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
++R + + LH+P+Q+GSD VL MNR Y +F +++ + E VPG+ I+TDII GF
Sbjct: 244 LIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEVPGVAISTDIIVGF 303
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP-AARMKKVPSAVVKKRSRELTSVF- 301
PGET+EDF Q ++ +++ F ++H+ + R GTP AAR +V AV K+R + ++
Sbjct: 304 PGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAVKKERVHRMQALAD 363
Query: 302 ----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
E ++G E RV + E A DGI G T Y++V
Sbjct: 364 RKAEEFHRSFIGREMRV----LFETAKDGI-TDGLTDNYIRV 400
>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
Length = 454
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 187/377 (49%), Gaps = 28/377 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEAVHI-MEDI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ RR+ V +NV GC CTYC + RG S T E++ + + G KE+
Sbjct: 139 TQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTEMEQLGQQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L + + V ++P G LR ++P + E L K
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFATSHPRYFTERLIK 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRHYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+ F T+ L+ + F Q++ + + PRPGTPAA S VK +R
Sbjct: 313 VGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWSNQLSEEVKSDRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALV 354
L +V +A +GR+E + + + D ++G T+G N L G V
Sbjct: 373 LVNV-KAAERSQRYQGRIEEVLVEDQNPKDKTQVMGRTRGNRLTFFTGDINELKGQLVKV 431
Query: 355 KITSVGRWSVFGEVIKI 371
KIT V +S+ GE +++
Sbjct: 432 KITEVRAFSLTGEPVEV 448
>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
Length = 443
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 22/376 (5%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K ++ K + + GC+ Q +D + V +V G I ++ E+++ H L
Sbjct: 73 KERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQGKHA--LAAD 130
Query: 64 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
LPA DLP R +KF +PI GC CTYC H RG S ++ +V V+ +
Sbjct: 131 MSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQDIVAEVKALGR 190
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L ++ +YG D+ G + L++A+ G +R ++P + + K
Sbjct: 191 AGYKEITLLGQNVNSYGLDLKDGTDFSSLVDALE---DAKGVERIRYMTSHPKDMTK--K 245
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
I + R V LH+PVQSGS+A L MNR YT+ + +VD E +P + + TD+I
Sbjct: 246 MIDAIARSTRVVHHLHLPVQSGSNATLKRMNRGYTVEHYLELVDYAREKMPDLVLTTDMI 305
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+E F +T+ LI+ + + + PR GTPAA K ++P KR + L
Sbjct: 306 VGFPGETEEMFQETLALIQRVGYDMAYTFIYSPRTGTPAATWKDQIPQEEKSKRLKRLMD 365
Query: 300 VFEAFTPYLGMEGRVERIWITEIAA-----DGIHLVGHTKGYVQVLVPSTGNM-LGTSAL 353
+ F+ L + ++E+ + I D H G T G ++ + G++ +G +
Sbjct: 366 IQNEFS--LALNKKMEQCVYSVIVEGPTKNDEHHWFGRTGGNKMIIWENDGSVSIGDTVS 423
Query: 354 VKITSVGRWSVFGEVI 369
V + W + G ++
Sbjct: 424 VAVDKGQTWVLKGHIV 439
>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
Length = 459
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 161/301 (53%), Gaps = 16/301 (5%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEVRL--LHRK 64
K+ + V GC+ Q G+R K + V +V G + V E++ E + G EV + + +
Sbjct: 86 KRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASVPELLCEAFESDGSEVFVDTVEKN 145
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ + +LP R F +PI GC CT+C RG S E +V V ++ DG
Sbjct: 146 RGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVPLVRGRERSRVFERVVAEVARLVDDG 205
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH--LKEI 182
V+EV L ++ +YGRD+ P + ++ E+ G +R +NP L H ++ +
Sbjct: 206 VREVTLLGQNVNSYGRDL-YGKP-RFSELLREVGKTGIERIRFTSSNPK-DLSHDTIRAM 262
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
AE P V LH+ VQSGS+ +L AM+R Y + +V+ L E +PG+ ++TDII G
Sbjct: 263 AET---PNVMPQLHLAVQSGSNRILRAMHRAYNREKYLSVIAELKEAIPGIALSTDIIVG 319
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 301
FPGET+EDF QT++L+ E + + + RPGTPAA++ P V+++R LT
Sbjct: 320 FPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPGTPAAKIVDTTPHEVIQERFERLTKRI 379
Query: 302 E 302
E
Sbjct: 380 E 380
>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
Length = 467
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 24/383 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+I++ + A K ++A GC Q ++ +EGV +V G + +V V + + +
Sbjct: 92 IISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGTRNKGDIVYYVNKAKDEQKPQ 151
Query: 60 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
L L K+ L++ + + +K L I GC C YC + RG S + ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPQKVL 210
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ DG +RIG P
Sbjct: 211 DEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLLEEIEKMDGIERVRIGSIEPS 268
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + E ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 269 FFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDA 326
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-K 292
I TD+I GFPGETDE+F++T +K+ K + HI +F PR GT AA M VVK K
Sbjct: 327 SITTDVIVGFPGETDEEFSETYEYLKKLKLTKTHIFKFSPRKGTKAADMPNQVDGVVKDK 386
Query: 293 RSR---ELTSVFEA-FTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS-TGN 346
RS+ EL + E F+ L G E ++ + E++ G+T+ YV+V + S N
Sbjct: 387 RSKALIELNAKNEGDFSKSLIGRE--LDVLVEQEVSNKPGVFEGYTRNYVKVEIQSGNEN 444
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
M+G L +I V G++I
Sbjct: 445 MVGKIILCRIEEASGDYVIGKII 467
>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
Length = 515
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 156/307 (50%), Gaps = 7/307 (2%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE+ L
Sbjct: 206 LPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRELAAKGYKEITL 265
Query: 131 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190
++ AYG+D +L L ++ +L +R ++P + L E+ + +
Sbjct: 266 LGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDFDDRLIEV--LAKKGN 322
Query: 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 250
+ +H+PVQSGS +L M R+YT + +V + +P + ++TDII GFP ET+E
Sbjct: 323 LVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVALSTDIIVGFPNETEEQ 382
Query: 251 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL- 308
F +T++L KE F + + PR GTPAARMK +P V K+R + L + A++
Sbjct: 383 FEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERLQRLNELVNAYSKAAM 442
Query: 309 -GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
EG+V + + E + L G+T+ V + +G VKIT WS+ G
Sbjct: 443 EKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKLVQVKITKAKTWSLDG 502
Query: 367 EVIKILN 373
E++ +L+
Sbjct: 503 EMVAVLD 509
>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
Length = 448
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 161/297 (54%), Gaps = 14/297 (4%)
Query: 12 KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR--LLHRKKL 66
++ + + GC+ Q G + L +L+ V +V G ++ + +++E ++ R ++ +
Sbjct: 80 RRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIEKGSRRAEIIDGRAE 139
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+LP+ R + + LPI VGC CT+C + RG S ++ + + R + GVK
Sbjct: 140 FHDELPEDREHPWAAWLPITVGCNNFCTFCIVPYVRGREISRPLDEIADQARAYVQQGVK 199
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+ L ++ +YGRD+ +L+A+ A G +R ++P + + + E
Sbjct: 200 EITLLGQNVNSYGRDLYGSPRFDAVLDAVAAS----GIERIRFATSHPKDLTDGVIERFA 255
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
L P + LH+P QSGS+ +L+AMNR YT+ + +++ L + P + ++TDII GFP
Sbjct: 256 TL--PNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRVVRPYIALSTDIIVGFP 313
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 300
GET++DF QT L+K + QV + R GTPAAR+ P +V+++R L S+
Sbjct: 314 GETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPAARLPDDTPRSVIQERFDRLVSI 370
>gi|297584652|ref|YP_003700432.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
MLS10]
gi|297143109|gb|ADH99866.1| RNA modification enzyme, MiaB family [Bacillus selenitireducens
MLS10]
Length = 441
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 181/364 (49%), Gaps = 18/364 (4%)
Query: 9 KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ + GV IV G Q +++ ++E E ++
Sbjct: 67 KNPDAVVCVTGCYAQTSPAEVMAIPGVDIVVGTQDRHKLIPYIKEFQVSREPVNGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S E ++ + ++
Sbjct: 127 KARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRKPEDVLSQANQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D+ NL LL + +G +RI I + +
Sbjct: 186 EAGYKEIVLTGIHTGGYGEDMKDYNLAGLLRDLET---IEGLRRIRISSIEASQITDEVI 242
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ + R V + LH+P+QSGSD VL M R+YT S +R V+ L E +PG+ + +D+I
Sbjct: 243 EV--INRSDKVVNHLHIPLQSGSDTVLKRMRRKYTTSFYRERVERLKEALPGLAVTSDVI 300
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 299
GFPGETDE+F +T LI++ + ++H+ F R GTPAARM ++V + +R L +
Sbjct: 301 VGFPGETDEEFEETYQLIRDIGYSELHVFPFSKRTGTPAARMDEQVDDGIKNERVHRLIA 360
Query: 300 VF--EAFTPYLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ +A EG + + E AD LVG+T Y++V V + +G V+I
Sbjct: 361 LSDQQAKEYASSYEGEIVEMIPEERDADHPERLVGYTDNYLKVAVELEDSYIGEIVKVRI 420
Query: 357 TSVG 360
G
Sbjct: 421 EQAG 424
>gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
Length = 505
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNINGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 259 -IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV++R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|453052257|gb|EME99743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 507
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 150/294 (51%), Gaps = 9/294 (3%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-- 69
+ V GC+ Q RD +K+ V +V G I ++ ++E E ++ + L A
Sbjct: 91 IAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARIQEEAQVEIAESLEAFPS 150
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R + + + I+VGC CT+C RG ++ V ++A+GV E+
Sbjct: 151 TLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEALVAEGVSEIT 210
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG DIG + + A +G +R +P + + IA + P
Sbjct: 211 LLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV--IAAMAETP 267
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V LH+P+QSGSD VL AM R Y F ++D + +P I+TDII GFPGET+E
Sbjct: 268 NVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIDKVRAAMPDAAISTDIIVGFPGETEE 327
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 302
DF QT+++++E +F Q Q+ RPGTPAA M ++P VV+ R L + E
Sbjct: 328 DFEQTMHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQARYERLVELQE 381
>gi|342213682|ref|ZP_08706404.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341597707|gb|EGS40249.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 433
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 182/375 (48%), Gaps = 17/375 (4%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR 59
AK ++ + +VV GC Q + + + ++GV++V G +++VE+VE E VR
Sbjct: 64 AKRRNPEAFIVVTGCYAQLAPEVISAIDGVNLVIGTANRNKIVELVENIPSTEEQISIVR 123
Query: 60 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
++ + L K + I GC C++C + RG L S +E +V +
Sbjct: 124 NVMEESTFEEMPLFGNEIEKCRAFMKIQEGCNNFCSFCIIPYTRGKLKSRKIEDIVEEAK 183
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
++A G KEV L+ G YG ++ P L + L DG +R G + E
Sbjct: 184 RLVAYGYKEVVLTGIHLGNYGIELP-ERPTLGRVVRELLTIDGLERIRFGSIESVEVSEE 242
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E+ + +P V LH+P+Q+GSD VL +MNR Y L ++ +V L +P + I TD
Sbjct: 243 LIEL--MATNPRVCPNLHLPLQAGSDPVLKSMNRHYNLQQYKDLVKYLRSRIPNLSITTD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
II GFPGETDE F +T+ +KE F +H + R GTPAA+M+ +VP AV K R L
Sbjct: 301 IIAGFPGETDELFEETMRTVKEVGFTHIHAFPYSIREGTPAAKMEDQVPEAVKKTRVALL 360
Query: 298 TSV-FEAFTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV- 354
+ E F Y + ++ I + D + G T YV +P + +V
Sbjct: 361 NQLGKEGFKAYANRFLNQPVKVLIEQ--CDDFYYYGLTNEYVHSKIPKQDHQFIVGDIVN 418
Query: 355 -KITSVGRWSVFGEV 368
K+T V V E+
Sbjct: 419 GKVTEVHSDVVLVEI 433
>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
Length = 514
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 171/357 (47%), Gaps = 25/357 (7%)
Query: 36 IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGAC 93
I G I R+ +++E E V + ++ +LPKVRR + I GC C
Sbjct: 169 IFGTHNIHRLPNILQEAYMSKEMVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFC 228
Query: 94 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153
TYC RG S E ++ VR + A G +E+ L ++ AYG+D+ + L +
Sbjct: 229 TYCIVPFTRGKERSRRPEDIIQEVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNL 287
Query: 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 213
+ E+ G +R ++P +HL I + + + +H+PVQSGS VL M R+
Sbjct: 288 MDEIRLMGVPRIRFSTSHPRDFDDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKIMARK 345
Query: 214 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273
YT + +V + +P + + TDII G+P ET+E F +T++L++E F + + P
Sbjct: 346 YTREQYLELVQKIKAAIPDVTLTTDIIVGYPNETEEQFEETMSLVREVGFEAAYTFIYSP 405
Query: 274 RPGTPAARMK-KVPSAVVKKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGI 327
R GTPAA+M VP V K+R + L ++ EA Y G + E+ +G+
Sbjct: 406 REGTPAAKMHDNVPLEVKKERLQRLNTLVNEQSAEAMKQYKGQ--------VVEVLVEGV 457
Query: 328 H------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 378
L G+T+ V +G VKIT+ WS+ GE+++ V+ K
Sbjct: 458 SKNNSEVLAGYTRKSKLVNFNGPKTAIGKIVKVKITNTKTWSLNGEIVEEFEPVEVK 514
>gi|333977524|ref|YP_004515469.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821005|gb|AEG13668.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 439
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 158/293 (53%), Gaps = 12/293 (4%)
Query: 82 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
++ I GC ACTYC + ARG S + +V +V+ +A G +E+ L+ GAYG+D
Sbjct: 148 VIKIQEGCDEACTYCIVRKARGLPRSLAPDKVVAQVKHFVAMGCREIVLAGTHLGAYGKD 207
Query: 142 I-GVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFILEHLKEIAEVLRHPCVYSFLHVPV 199
+ G NL L+ + A LP S LR+ P LE L+ +A + V FL++P+
Sbjct: 208 LPGWNLARLIKELDA-LP--HSFRLRLSYIEPMDLCLEFLQALARARK---VCPFLYLPL 261
Query: 200 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259
QSGSD +L M R YT +F +V EL+PG+ I TD+I GFPGET +D QT+ L++
Sbjct: 262 QSGSDRILQRMGRRYTSVEFARLVQKARELIPGLSIWTDLIVGFPGETVDDHQQTMKLVE 321
Query: 260 EYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIW 318
E +H+ + PRPGT AA +V V K+R +EL ++ E + + +R+
Sbjct: 322 ELALSHLHVFPYSPRPGTEAAAFPDQVAPDVKKRRVQELRALDEKLSLRFHRQLVGKRVQ 381
Query: 319 ITEIAADGIHLVGHTKGYVQVLVPSTGN--MLGTSALVKITSVGRWSVFGEVI 369
+ + G ++ YV+V P GN + G+ V++ + G W V G +I
Sbjct: 382 VLVEKVEENLGEGFSEHYVKVRFP-VGNPELKGSLVPVQVLAAGSWGVEGCII 433
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 181/365 (49%), Gaps = 14/365 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 211 LGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 270
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 271 VENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 330
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 331 ITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 387
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 388 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 447
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA+M VP V K+R + L ++ + A
Sbjct: 448 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERLQRLNALVQEIAA 507
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 508 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 567
Query: 364 VFGEV 368
+ GE+
Sbjct: 568 LTGEL 572
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 200/379 (52%), Gaps = 19/379 (5%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE----VR 59
K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G++ +
Sbjct: 69 KEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGYKAIAILD 128
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L + + + P R NK+ + I GC CTYC RG S + S++ V+
Sbjct: 129 ELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKR 188
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 178
++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +P + +
Sbjct: 189 LVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGHPRDLTDD 246
Query: 179 LKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ E +A++ P V + LH+P Q+GS+ +L+ M+R YT ++ ++ L E V + ++T
Sbjct: 247 IIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKVKDIAMST 303
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
D+I GFP ET+EDF T++++K+ +F QV +F PRPGTPAA M+ ++P V +R R
Sbjct: 304 DVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDVKTERMRR 363
Query: 297 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
L + ++ + EG V+ + + E +G L+G T ++LG +
Sbjct: 364 LLELQKSILSEIAKKYEGTVQEVLVEE-EKNG-ELIGRTTTNKWASFKGDPSLLGKIVKI 421
Query: 355 KITSVGRWSVFGEVIKILN 373
K+ +S+ GE+++++
Sbjct: 422 KVIKSSPFSLEGELLEVIK 440
>gi|345022138|ref|ZP_08785751.1| hypothetical protein OTW25_12549 [Ornithinibacillus scapharcae
TW25]
Length = 451
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 187/375 (49%), Gaps = 27/375 (7%)
Query: 17 VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLPAL 69
V GC Q S ++ E+ GV IV G Q +++ +EE K E ++ + +
Sbjct: 75 VTGCYAQTSPGEILEIPGVDIVVGTQDRKNMIQYIEEHKKTKEPINGVSNIMKNRVFEEM 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P+ ++ L I GC CT+C +RG L S ES++ + + ++ G KE+
Sbjct: 135 DVPEFT-DRTRASLKIQEGCNNFCTFCIIPWSRGLLRSRDPESVLSQAQKLVDAGYKEIV 193
Query: 130 LSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----LEHLKEIAE 184
L+ T YG D+ N +LL + E +G +RI I +E L + +
Sbjct: 194 LTGIHTAGYGEDLNDYNFAMLLRDL--ETKVNGLERIRISSIEASQITDEVIEVLDQSEK 251
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
++RH LH+P+QSGSD+VL M R+Y+ + V+ + +P + I +D+I GFP
Sbjct: 252 IVRH------LHIPLQSGSDSVLKRMRRKYSTDFYYQKVEKIKRALPDLAITSDVIVGFP 305
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 303
GET+++F +T IK+ + ++H+ F R GTPAARM+ +V V +R + + + E
Sbjct: 306 GETEDEFMETYRFIKKVGYSELHVFPFSRRTGTPAARMEDQVDEEVKNERVQRMIDLSEE 365
Query: 304 FTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E V + E + + + LVG+T Y++V T +M+G VKIT
Sbjct: 366 LAKIYASRYENEVLEVIPEERSPEDENPNMLVGYTDNYLKVKFEGTPDMIGKIVRVKITK 425
Query: 359 VGRWSVFGEVIKILN 373
G G ++I++
Sbjct: 426 SGYPYNKGTFVRIMD 440
>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
Length = 451
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 187/378 (49%), Gaps = 34/378 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++EE G +V + D+
Sbjct: 80 LIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVATEPVHI-MEDI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR V +NV GC CTYC RG S T E++ + + KEV
Sbjct: 139 TKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEMEELARQDYKEVT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKE 181
L ++ AYGRD+ G + L + + V ++P G +R ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATSHPRYFTERLIK 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ L P V H+P QSG + +L AM R YT +R +++ + E +P I+ D I
Sbjct: 256 ACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHQRYRQIIEKIRECMPDASISADAIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA + S VK +R L
Sbjct: 314 GFPGETEEQFENTLQLVEDLGFDQLNTAAYSPRPGTPAAIWENQVSEEVKSDRLQRLNHL 373
Query: 298 --TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTS 351
T E YL GR+E + + + D ++G T+G L TGN + G
Sbjct: 374 VATKAAERTQRYL---GRIEEVLVEDQNPKDSTQVMGRTRG--NRLTFFTGNIQQLKGKL 428
Query: 352 ALVKITSVGRWSVFGEVI 369
VKIT +S+ GE++
Sbjct: 429 VKVKITEARAFSLTGEIV 446
>gi|404495733|ref|YP_006719839.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|418066379|ref|ZP_12703743.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
gi|78193349|gb|ABB31116.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|373560640|gb|EHP86897.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
Length = 431
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 175/364 (48%), Gaps = 35/364 (9%)
Query: 15 LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL--LHRKKLPALD 70
+VV GC Q + D +K+L GV+ +VG + + E++ + +V + + R++
Sbjct: 73 VVVTGCYAQVAPDAVKDLPGVALVVGNSEKRSIGELLRDAAPAEKVMVSDISRERTAE-- 130
Query: 71 LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+R F E L + GC C+YC +ARG S + + +R A G +
Sbjct: 131 --GLRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSFSEALAGIRNFAAQGFR 188
Query: 127 EVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EV L+ GAYG D+ NL LL A AE LR+G P + + L +
Sbjct: 189 EVVLTGIHLGAYGLDLAPPTNLLALLEASEAE---KAVPRLRVGSVEPNELTDALVDF-- 243
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
+ R V LH+P+QSG D VL M R YT + FR V+ L+ +VP + I D+I GFP
Sbjct: 244 LARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERLVAVVPDIFIGCDVIAGFP 303
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS--------R 295
GETDE+F TV LI+E +H+ + R GT AARM+ +V V++ R+ R
Sbjct: 304 GETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARMEGQVDGKVIRGRAEILREVGER 363
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ S E F GR + + DG VG ++ Y+ V VP + A V
Sbjct: 364 KRRSFCERFV------GRELAVLMQNRGRDG-EAVGLSRNYLPVRVPGYAGEMNAEATVM 416
Query: 356 ITSV 359
+T V
Sbjct: 417 VTEV 420
>gi|359148544|ref|ZP_09181685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
sp. S4]
Length = 513
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 152/305 (49%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD K V +V G I ++ ++E E ++
Sbjct: 91 KTKRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 150
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + ++VGC CT+C RG ++ V ++
Sbjct: 151 ESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRTGDILAEVEALV 210
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 211 AEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 267
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD VL AM R Y F ++++ + +P I TDII
Sbjct: 268 IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAIPEAAITTDIIV 327
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P VV++R L ++
Sbjct: 328 GFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEVVQERYMRLVAL 387
Query: 301 FEAFT 305
E +
Sbjct: 388 QEEIS 392
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 20/370 (5%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R L++ + V ++ G I R+ ++++E + G E V + ++
Sbjct: 143 LGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKERVVEVWSKEGDV 202
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPK+R K + I GC CTYC + RG S E ++ VR + G KE
Sbjct: 203 IENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIDEVRDLARQGYKE 262
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ E+ +R ++P +HL E+ + +
Sbjct: 263 ITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 319
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M+R+YT + +V + E +P + + TD+I GFP ET
Sbjct: 320 GGNLMDHIHLPVQSGSTEMLKIMSRKYTREQYLELVRKIKEAIPNVSLTTDLIVGFPNET 379
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
DE F T++L +E ++ + + PR GTPAA M VP V K+R + L ++ +
Sbjct: 380 DEQFEDTLSLYREVEYDSAYTFIYSPREGTPAADMVDNVPMEVKKERLQRLNALVNEIS- 438
Query: 307 YLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ + + I E+ +G L G+T+ V + +G VKIT
Sbjct: 439 --AKKNKQYQDKIVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGQIVKVKITDAK 496
Query: 361 RWSVFGEVIK 370
WS+ GE+++
Sbjct: 497 TWSLNGEMVE 506
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 176/369 (47%), Gaps = 21/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD- 70
+VVAGCV Q G L V +V G Q R+ +++ ++ E R++ + PA D
Sbjct: 80 IVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---RETRVVD-TEFPAEDK 135
Query: 71 ---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R L + GC C +C + RG S +V ++V R ++ GV+E
Sbjct: 136 FDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVDEARRLVEGGVRE 195
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ AY D P L ++ L G LR ++P + L IA
Sbjct: 196 ITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSHPNDFADDL--IAAHA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+P V +LH+PVQSGSD +L AMNR +T +R +++ + P + +++D I GFPGE
Sbjct: 254 TNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRNARPDIALSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE--- 302
TD DF +T+ L+ + F ++ PR GTPAA R VP AV +R L + +
Sbjct: 314 TDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVKTERLAALQDLLDRQR 373
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
A+ G + I + + + G T V + + +GT V+IT G
Sbjct: 374 HAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPASTIGTVVPVRITRAGS 431
Query: 362 WSVFGEVIK 370
S+FGE ++
Sbjct: 432 NSLFGETLE 440
>gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium populi BJ001]
gi|229890615|sp|B1ZJR5.1|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi
BJ001]
Length = 446
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 176/369 (47%), Gaps = 21/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD- 70
+VVAGCV Q G L V +V G Q R+ +++ ++ E R++ + P D
Sbjct: 80 IVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---RETRVVD-TEFPVEDK 135
Query: 71 ---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R L + GC C +C + RG S +V ++V R ++ GV+E
Sbjct: 136 FDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVEEARRLVEGGVRE 195
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ AY D P L ++ L G LR ++P + L IA
Sbjct: 196 ITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSHPNDFADDL--IAAHA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+P V +LH+PVQSGSD +L AMNR +T +R +++ + P + +++D I GFPGE
Sbjct: 254 GNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRTARPDIALSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE--- 302
+D DF +T+ L+ E F ++ PR GTPAA R VP AV +R L + +
Sbjct: 314 SDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPEAVKTERLAALQQLLDQQR 373
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
AF G V I + + + G T V + + +GT V+IT G
Sbjct: 374 HAFN--AAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPASTIGTLVPVRITRAGS 431
Query: 362 WSVFGEVIK 370
S+FGEV++
Sbjct: 432 NSLFGEVLE 440
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 182/367 (49%), Gaps = 14/367 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ +++E E V + ++
Sbjct: 158 LGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKEMVVEVWSKEGDV 217
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 218 IENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 277
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 278 ITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 334
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+YT + +V + E +PG+ + TDII GFP ET
Sbjct: 335 GGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVALTTDIIVGFPNET 394
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + PR GTPAA+M VP V K+R + L ++ +
Sbjct: 395 DEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERLQRLNALVNEISA 454
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V + +G V+IT W+
Sbjct: 455 KKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAIGQLVNVRITEAKTWT 514
Query: 364 VFGEVIK 370
+ GE+++
Sbjct: 515 LNGEMVE 521
>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 189/377 (50%), Gaps = 32/377 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G+++ + D+
Sbjct: 80 LVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVATEPIHI-VEDI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ V +NV GC CTYC + RG S T E++ + + G KEV
Sbjct: 139 TKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVELGRQGFKEVT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L L + + V ++P G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATSHPRYFTERLIR 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + VL M+R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNEVLKQMSRGYTQEKYRRIIDTIRRYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+ F T+ L+ + F ++ + + PRPGTPAA + S VK +R
Sbjct: 313 VGFPGETEAQFENTLKLVDDIGFDHLNTAAYSPRPGTPAAVWENQLSEEVKSDRLQRLNH 372
Query: 297 LTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVP-STGNMLGTSA 352
L ++ E YL GR+E + + + D ++G T+G P + + G
Sbjct: 373 LVAIKASERSQRYL---GRIEEVLVEDQNPKDPAQVMGRTRGNRLTFFPGNIAELKGKLV 429
Query: 353 LVKITSVGRWSVFGEVI 369
VKIT + +S+ GEV+
Sbjct: 430 QVKITEIRAFSLTGEVV 446
>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
Length = 466
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 182/376 (48%), Gaps = 30/376 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V ++ D+
Sbjct: 100 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVATEAVEIME-DI 158
Query: 72 PKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR+ K + + GC CTYC + RG S E++ + + G KEV L
Sbjct: 159 TKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMEDLGRQGYKEVTL 218
Query: 131 SSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KE 181
++ AYGRD+ P L V ++P G LR ++P + E L K
Sbjct: 219 LGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFATSHPRYFTERLIKA 276
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +P I D I
Sbjct: 277 CAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYMPDASITADAIV 333
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE----- 296
GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S VK +
Sbjct: 334 GFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEVKADRLQRINHV 393
Query: 297 -LTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKG-YVQVLVPSTGNMLGTSAL 353
T+ E Y GR E + + + D ++G T+G + + G
Sbjct: 394 VTTTAMERSQRYF---GRTEEVLVEAQNLKDSTQVMGRTRGNRLTFFKGDIAELAGKMVR 450
Query: 354 VKITSVGRWSVFGEVI 369
VKIT + +S+ GE++
Sbjct: 451 VKITDIRAFSLTGEML 466
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 181/365 (49%), Gaps = 14/365 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA+M VP V K+R + L ++ + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERLQRLNALVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEV 368
+ GE+
Sbjct: 511 LTGEL 515
>gi|410668430|ref|YP_006920801.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
gi|409106177|gb|AFV12302.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
Length = 461
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 188/399 (47%), Gaps = 56/399 (14%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR------- 59
+S + V GC Q + ++ + GV +VG R+VE+V E ++
Sbjct: 81 RSPAAVVAVLGCYSQVAAEEVLSIPGVDLVVGTSGRSRLVELVSEAMEKKRSGEWPAKGI 140
Query: 60 --------LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 111
L ++LP D P+ R L I GC CTYC +ARG + S +
Sbjct: 141 NAVEALDGSLDFEQLPLPDDPRRTR----AFLKIEDGCDQFCTYCTVPYARGGVRSLHPD 196
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGM 169
+ R+ ++ G +EV L+ T AYG+D+G VNLP LL +V ELP G+ +R+
Sbjct: 197 LVQERLSELVCAGYREVVLTGVHTSAYGKDLGGGVNLPRLLRELV-ELP--GNFRIRLSS 253
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
P + E L E+ C + LH+P+QSG D +L MNR YT ++R + E+
Sbjct: 254 VEPAEVTEELLELLATSPRLCRH--LHIPLQSGDDEILCRMNRPYTAEEYRKLFHLAREM 311
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM------- 282
+PG+ I TD++ GFPGE + F T NLI F +H+ ++ PRPGTPAA M
Sbjct: 312 IPGIAITTDVLVGFPGEEERHFQNTFNLIATLPFRDLHVFKYSPRPGTPAAAMPEQVAPP 371
Query: 283 -KKVPSAVVKKRSRELTSVF------EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKG 335
K S+ +++ + EL + F E T + R + W G T
Sbjct: 372 VKDRRSSCLRRLADELAASFARRFVGETMTVLVERRSRKRQGWWE----------GLTDN 421
Query: 336 YVQVLVPST---GNMLGTSALVKITSVG-RWSVFGEVIK 370
Y++V P++ + G V+I VG R + GE ++
Sbjct: 422 YLRVFFPASQRKSGVRGEFVPVRILEVGPRDELQGEAVE 460
>gi|399889711|ref|ZP_10775588.1| RNA modification protein [Clostridium arbusti SL206]
Length = 433
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 25/382 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+I+K K ++A GC Q S ++ +++GV ++ G + ++V V + +
Sbjct: 59 MISKVKKLNGDAIIAVVGCYSQIASDEISKIDGVDVILGTKNKGQIVYFVNRAINEKKQM 118
Query: 60 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
+ K L++ + + ++ L I GC C+YC +ARG + S + ++
Sbjct: 119 IAVNDVFVDKSFEELNIEEYQ-DRTRAFLKIQDGCNRFCSYCLIPYARGGVCSKEPDKVL 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
V+ + G KE+ LS T +YG DI NL LL I G +RIG +P
Sbjct: 178 EEVKKLAEHGFKEIILSGIHTASYGVDIKGDCNLVSLLEKID---KIQGINRVRIGSIDP 234
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
F E + E L+ C + H+ +QSG D L MNR+YT +++ +V+ L +
Sbjct: 235 TFFTEGVIERIASLKKLCPH--FHLSLQSGCDETLKRMNRKYTTEEYKNIVEDLRNNIKD 292
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 291
+ I TD+I GFPGETDE+F T N ++E K ++HI ++ PR GT AA MK ++ + +
Sbjct: 293 VSITTDVIVGFPGETDEEFTSTYNFLREIKLSKMHIFKYSPRKGTKAAEMKNQIDGSTKE 352
Query: 292 KRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
KRS+ L + E + ++G + E ++ + G+T Y++V+ S N
Sbjct: 353 KRSKILIELNCKLEKEFMSKFIGT--KTEVLYEDTFKENNNLYEGYTPNYIKVVSRSNNN 410
Query: 347 MLGTSALVKITSVGRWSVFGEV 368
+ ++ + + GE+
Sbjct: 411 ICSRIENTRLIEIEEQYLTGEI 432
>gi|386842966|ref|YP_006248024.1| methylase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|374103267|gb|AEY92151.1| methylase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|451796257|gb|AGF66306.1| methylase [Streptomyces hygroscopicus subsp. jinggangensis TL01]
Length = 464
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 39 KKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 98
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 99 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 158
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 159 VGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIDGLERVRFTSPHPRDFTDDV- 216
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 217 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQDRYLGIIEKVRAAIPHAAITTDII 275
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV++R L +
Sbjct: 276 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMENQIPKQVVQERYERLVA 335
Query: 300 VFEAFT 305
+ E +
Sbjct: 336 LQEEIS 341
>gi|148263556|ref|YP_001230262.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
gi|146397056|gb|ABQ25689.1| MiaB-like tRNA modifying enzyme [Geobacter uraniireducens Rf4]
Length = 444
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 185/369 (50%), Gaps = 25/369 (6%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL--LHRKKLPALD 70
+VV GC Q +L ++ GV+ I+G + + +++E G +V + + R+K D
Sbjct: 81 IVVTGCYAQVAFEELSDMPGVNLILGNSEKKGIAALLKEIGDGRQVLVSDISREK----D 136
Query: 71 LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
+ F E L + GC C+YC +ARG S ++ + +RT A G K
Sbjct: 137 AGGAQLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVPLDEALAGIRTFAAQGFK 196
Query: 127 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
EV L+ G YG D+ L +L I AE +R+G P + + L IA +
Sbjct: 197 EVVLTGIHLGGYGLDLTPPLTLLDILIAAE-KQQLVERIRVGSVEPTEVSDAL--IAFLA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
V LH+P+QSG+D VLS MNR+Y + FR VV+ L+ +P + I TDII GFPGE
Sbjct: 254 GSKLVCPHLHIPLQSGNDQVLSRMNRKYAANLFREVVEKLVCALPDICIGTDIITGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA-- 303
+ E+F Q ++ H+ F PR GTPAA M V S+V+K+R++ L + E
Sbjct: 314 SAEEFEQGYRFLESLPVAYFHVFPFSPRTGTPAATMGDHVRSSVIKERAKALRKLSEEKK 373
Query: 304 ---FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+ +LG E V I +G+ L G ++ Y+ V V +++ V+IT V
Sbjct: 374 KAYYRTFLGKELPV---LIQNREENGM-LKGLSRNYMPVFVKGDDSLINNEQRVRITGVV 429
Query: 361 RWSVFGEVI 369
R V GEV+
Sbjct: 430 REEVKGEVV 438
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 181/367 (49%), Gaps = 14/367 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V I G I R+ +++E E V + ++
Sbjct: 157 LGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKEMVVEVWSKEGDV 216
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 217 IENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 276
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 277 ITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 333
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+YT + +V + E +PG+ + TDII GFP ET
Sbjct: 334 GGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVALTTDIIVGFPNET 393
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + PR GTPAA+M VP V K+R + L ++ +
Sbjct: 394 DEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERLQRLNALVNEISA 453
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V + +G V+IT W+
Sbjct: 454 KKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAVGQLVNVRITEAKTWT 513
Query: 364 VFGEVIK 370
+ GE+++
Sbjct: 514 LNGEMVE 520
>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
Length = 430
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 16/377 (4%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 63
I K + K + + GCV ++ GVS ++G + I +V E V G + ++
Sbjct: 60 IGKLRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLD 118
Query: 64 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
L +D KV R +K + I GC CTYC + RG S +ES++ VRT++
Sbjct: 119 DTLDEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLV 178
Query: 122 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 178
G KE ++ AYG+D+ G +L LL A++ DG L + P F LE
Sbjct: 179 EKGYKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEI 235
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ + E +P + +H+PVQ GSD +L AMNR YT ++ +++ + +VP I++D
Sbjct: 236 PQAMVE---NPKIAKSIHLPVQHGSDKILRAMNRRYTREEYIDLINNIRNIVPDASISSD 292
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 296
II GFPGETDEDF TV L+K+ KF +++++ + PR GT A + K VP +R
Sbjct: 293 IIVGFPGETDEDFEATVKLVKDIKFERLNLAIYSPREGTVAWKHFKDDVPYKTKVRRMSY 352
Query: 297 LTSVFEAFTPYLGMEGRVERIW-ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
L ++ + L + +R+ I E A G + + ++G + +VK
Sbjct: 353 LLNLQKMINRELNESYKDKRVEVIVEAQAKNGLFYGRDIRNKIISFEGSHELIGKTVVVK 412
Query: 356 ITSVGRWSVFGEVIKIL 372
+T + ++G V ++L
Sbjct: 413 VTKITAGPLYGTVEEVL 429
>gi|295695882|ref|YP_003589120.1| MiaB-like tRNA modifying protein [Kyrpidia tusciae DSM 2912]
gi|295411484|gb|ADG05976.1| MiaB-like tRNA modifying enzyme [Kyrpidia tusciae DSM 2912]
Length = 473
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 185/378 (48%), Gaps = 22/378 (5%)
Query: 10 SAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHEV--RLLH 62
S + +VV GC Q ++ + GV +V QI VE V E + ++V +
Sbjct: 69 SPEATIVVTGCYAQVAPGEVAAIPGVDLVMGNDRRGQIVEWVEKVREERRPYQVVANVRR 128
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ LD+P ++ L I GC C++C +RG + S E+++ + R +
Sbjct: 129 VRDFEELDVPAFA-DRARATLKIQDGCNNFCSFCIIPFSRGFVRSRKPENVLHQARRLAE 187
Query: 123 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G +E+ L+ TG YG D+ G L LL + EL + S +RI I E + +
Sbjct: 188 AGYREIVLTGIHTGGYGADLEGYTLADLLVDLEREL--EDSVRIRISSIEASQIDERMLD 245
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ + C + LH+P+QSG D VL M R YT++++ + + E++P + + TD+I
Sbjct: 246 VLRRSKQICRH--LHIPLQSGDDEVLRRMRRRYTVAEYAEKIHRIREVLPEVAVTTDVIV 303
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 300
GFPGET E F+ T LI+E KF Q+H+ + PR GT AAR VP+ V ++R R+L +
Sbjct: 304 GFPGETKEQFDNTRRLIEELKFSQLHVFPYSPRRGTAAARYPNPVPAEVKEERVRQLVRL 363
Query: 301 FEAFTPYLGME--GRVERIWITEIAAD------GIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+ T GRV + + D + GH Y++++ + +M+G
Sbjct: 364 SKDLTLAYASRFVGRVLPVVVESSVEDRRAEDGNMLFTGHADNYLEMVFAADPSMVGQLV 423
Query: 353 LVKITSVGRWSVFGEVIK 370
V++ G FG V++
Sbjct: 424 EVRLEDPGAERSFGSVVR 441
>gi|383639215|ref|ZP_09951621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
chartreusis NRRL 12338]
Length = 507
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 155/304 (50%), Gaps = 23/304 (7%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-- 69
+ V GC+ Q RD +K+ V +V G I ++ ++E E ++ + L A
Sbjct: 89 IAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIAESLEAFPS 148
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R + + + I+VGC CT+C RG ++ + ++A+GV E+
Sbjct: 149 TLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEALVAEGVSEIT 208
Query: 130 LSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE-----I 182
L ++ AYG DIG LL A ++ R+ T+P H ++ I
Sbjct: 209 LLGQNVNAYGSDIGDREAFSKLLRACGKI-----ESLERVRFTSP-----HPRDFTDDVI 258
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + P V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII G
Sbjct: 259 AAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAISTDIIVG 318
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGETDEDF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L ++
Sbjct: 319 FPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQIPKKVVQERYERLVALQ 378
Query: 302 EAFT 305
E +
Sbjct: 379 EEIS 382
>gi|456387694|gb|EMF53184.1| radical SAM protein [Streptomyces bottropensis ATCC 25435]
Length = 483
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 159/309 (51%), Gaps = 11/309 (3%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+A K+A+ + +A GC+ Q RD +K+ V +V G I ++ ++E E +
Sbjct: 55 LAPMKTARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQ 114
Query: 60 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ + L A LP R + + + I+VGC CT+C RG ++ +
Sbjct: 115 VEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEI 174
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
++A+GV E+ L ++ AYG DIG + + A DG +R +P +
Sbjct: 175 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVRFTSPHPRDFTD 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I T
Sbjct: 234 DV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRASIPHAAITT 291
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R
Sbjct: 292 DIIVGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMENQIPKQVVQARYER 351
Query: 297 LTSVFEAFT 305
L ++ E +
Sbjct: 352 LVALQEEIS 360
>gi|260655072|ref|ZP_05860560.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
E3_33 E1]
gi|260630183|gb|EEX48377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Jonquetella anthropi
E3_33 E1]
Length = 432
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 10/304 (3%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P VR ++ + I+ GC CTYC + RG S E ++ VR+++A G KE+ L
Sbjct: 134 PSVRSFQWKASVTISHGCDNFCTYCIVPYVRGRFASRPAEEILAEVRSLVAGGAKEITLL 193
Query: 132 SEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
++ +G D G+ LL +VA P G LR + P + E ++RH
Sbjct: 194 GQNVDTWGLDCPGGMRFADLLE-LVAREP--GVEWLRFMTSYPTDFTVDVVET--MVRHS 248
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +++P+Q+GS+ VL AMNR Y+L ++ + + + +P + + +D+I GFPGET+E
Sbjct: 249 NICPSINLPIQAGSERVLRAMNRRYSLEEYADTMKLIRDGLPEVGLTSDLIVGFPGETEE 308
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
+F ++ ++ ++F VH + + PR GTPAA+MK ++P+AV ++R E+ + + +
Sbjct: 309 EFQCSLAALERFRFDMVHTAAYSPRQGTPAAKMKNQIPAAVKERRLNEVNDLQTSIARQI 368
Query: 309 GME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
GR ++ + A G ++ T VL+ G G KI S W + G
Sbjct: 369 NQSLVGRTYKVLVDGPAPKGDYMEARTATDKVVLLKGAGASFGQFVTAKIDSAESWCLKG 428
Query: 367 EVIK 370
V++
Sbjct: 429 TVLR 432
>gi|171464142|ref|YP_001798255.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|229890593|sp|B1XS06.1|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 448
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 17/312 (5%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP R+ + + I GC C+YC + RG S + + ++ V + + GVKE+ L
Sbjct: 138 LPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRSFDDVLTEVAGLASKGVKEIVL 197
Query: 131 SSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
++ AY +G + +L+ IV E+P G +R ++P + L ++
Sbjct: 198 LGQNVNAYLGKMGDRQEIADFALLIEYIV-EIP--GVERIRFTTSHPKEFTQRLIDV--Y 252
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ P + S LH+PVQ GSDA+LSAM R YT +F++++ + + P + +++D I GFPG
Sbjct: 253 TKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRKMRAVRPDLTLSSDFIVGFPG 312
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+ DF + + +++E F F PRPGTPAA + P V KR + L ++ E+
Sbjct: 313 ETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDDTPYEVKLKRLQTLLALVESQ 372
Query: 305 TPYLG--MEGRVERIWITEIAADGIHLVGHTKG--YVQVLVPSTG--NMLGTSALVKITS 358
+ M G +ER+ I +A DGI+L G + + P+ N++G ++IT
Sbjct: 373 ANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFTAPAQNIENLIGQMVDIRITE 432
Query: 359 VGRWSVFGEVIK 370
V +++ G++++
Sbjct: 433 VLNYTLRGKLVE 444
>gi|331270008|ref|YP_004396500.1| MiaB-like tRNA modifying protein [Clostridium botulinum BKT015925]
gi|329126558|gb|AEB76503.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum BKT015925]
Length = 433
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 165/317 (52%), Gaps = 14/317 (4%)
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+L K+ L++ + + +K L I GC C+YC ARG + S E+++ V+
Sbjct: 124 VLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPETIIDEVKK 182
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ G KEV LS D +YG D+ N LL + A +G +RIG P F E +
Sbjct: 183 LSEHGFKEVILSGIDISSYGVDLEGNWN-LLKVLKAIDEIEGINRVRIGSIGPEFFDEDI 241
Query: 180 -KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
KEI L+ C + H+ +QSG ++ L MNR+YT +FR ++ L + V + I TD
Sbjct: 242 IKEIGS-LKKLCPH--FHLSLQSGCNSTLKRMNRKYTTEEFRDIIVLLRKYVKDISITTD 298
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 297
II GFPGET E+F +T N +KE K ++HI ++ PR GT A +M+ +V + ++RS+ L
Sbjct: 299 IIVGFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTRAEKMENQVDGNIKEERSKLL 358
Query: 298 TSVFEA-----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
++ E ++G + ++ ++ + + + G+T Y++V+ S ++ G
Sbjct: 359 LALNEKNEKEFMNKFIGEDMKI--LYEQKCSDKEEYYEGYTPNYIKVIAKSREDISGKIL 416
Query: 353 LVKITSVGRWSVFGEVI 369
K+ GE+I
Sbjct: 417 NTKLIETKEEYTIGEII 433
>gi|374986084|ref|YP_004961579.1| adenosine tRNA methylthiotransferase [Streptomyces bingchenggensis
BCW-1]
gi|297156736|gb|ADI06448.1| adenosine tRNA methylthiotransferase [Streptomyces bingchenggensis
BCW-1]
Length = 497
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 22/309 (7%)
Query: 11 AKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
A++P + V GC+ Q RD +K+ V +V G I + ++E E ++ +
Sbjct: 75 ARRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERARIQEEAQVEIAE 134
Query: 65 KLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L A LP R + + + I+VGC CT+C RG ++ V T++A
Sbjct: 135 SLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVETLVA 194
Query: 123 DGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP---PFILE 177
+GV E+ L ++ AYG DIG LL A + S + R+ T+P F +
Sbjct: 195 EGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNVSGLERVRFTSPHPRDFTDD 249
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ +AE V LH+P+QSGSD VL AM R Y + +++ + +P I+T
Sbjct: 250 VIAAMAETEN---VMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAMPDAAIST 306
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGETD DF QT+++++E +F Q Q+ RPGTPAA M +VP AVV++R
Sbjct: 307 DIIVGFPGETDADFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQVPKAVVQERYER 366
Query: 297 LTSVFEAFT 305
L ++ E +
Sbjct: 367 LVALQEEIS 375
>gi|225567940|ref|ZP_03776965.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
15053]
gi|225163228|gb|EEG75847.1| hypothetical protein CLOHYLEM_04013 [Clostridium hylemonae DSM
15053]
Length = 477
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 160/315 (50%), Gaps = 27/315 (8%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP R+ F + I GC C+YC + RG S E+++ + ++ DGV EV
Sbjct: 176 DLPNERKYSFKSGVNIMFGCNNFCSYCIVPYVRGRERSRAPEAIIREIEHLVEDGVTEVM 235
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L ++ +YG+ + + P+ A++ E+ +G +R ++P + + L E+
Sbjct: 236 LLGQNVNSYGKTL--DTPVTFAALLKEIEKIEGLERIRFMTSHPKDLSDELIEVMGSSHK 293
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
C + LH+PVQSGS +L MNR YT + +V + E VPG+ + TDII GFPGET+
Sbjct: 294 ICRH--LHLPVQSGSTDILKKMNRHYTKEQYLELVRKIREAVPGISLTTDIIVGFPGETE 351
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR-----------SRE 296
EDF +T+++++ ++ + R GTPAA M ++VP VVK R +RE
Sbjct: 352 EDFQETLDVVRRVRYDSAFTFIYSKRTGTPAAVMEEQVPGEVVKDRFDRLLGEVQSIARE 411
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ SV EG V+R + ++ D + G + V P + +++GT A V+
Sbjct: 412 VCSVH---------EGSVQRALVESVSDHDSTLVTGRLGNNLLVHFPGSPDLIGTYADVE 462
Query: 356 ITSVGRWSVFGEVIK 370
+T + G+ +
Sbjct: 463 LTECKGFYYIGKACR 477
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 139 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEVWSKEGDV 198
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LP+ R+ K + I GC CTYC + RG S + ++ VR + A+G KE
Sbjct: 199 IENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKE 258
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 259 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 315
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS AVL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 316 GGNLLDHIHLPVQSGSSAVLKLMARKYDRERYLELVRKIKEAMPNASLTTDIIVGFPNET 375
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 376 DEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 435
Query: 307 --YLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+ + + + + L G+T V + +G VKIT WS
Sbjct: 436 KKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNIVKVKITQAKTWS 495
Query: 364 VFGEVI 369
+ GE++
Sbjct: 496 LDGEMV 501
>gi|418472250|ref|ZP_13042006.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
gi|371547146|gb|EHN75550.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
Length = 505
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 158/311 (50%), Gaps = 22/311 (7%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP---PFI 175
+A+GV E+ L ++ AYG DIG LL A + + R+ T+P F
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERVRFTSPHPRDFT 255
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
+ + +AE P LH+P+QSGSD VL AM R Y + +++ + +P I
Sbjct: 256 DDVITAMAET---PNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAI 312
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 294
TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV++R
Sbjct: 313 TTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERY 372
Query: 295 RELTSVFEAFT 305
L ++ E +
Sbjct: 373 ERLVALQEEIS 383
>gi|424844918|ref|ZP_18269529.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Jonquetella anthropi DSM 22815]
gi|363986356|gb|EHM13186.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Jonquetella anthropi DSM 22815]
Length = 437
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 10/304 (3%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P VR ++ + I+ GC CTYC + RG S E ++ VR+++A G KE+ L
Sbjct: 139 PSVRSFQWKASVTISHGCDNFCTYCIVPYVRGRFASRPAEEILAEVRSLVAGGAKEITLL 198
Query: 132 SEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
++ +G D G+ LL +VA P G LR + P + E ++RH
Sbjct: 199 GQNVDTWGLDCPGGMRFADLLE-LVAREP--GVEWLRFMTSYPTDFTVDVVET--MVRHS 253
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +++P+Q+GS+ VL AMNR Y+L ++ + + + +P + + +D+I GFPGET+E
Sbjct: 254 NICPSINLPIQAGSERVLRAMNRRYSLEEYADTMKLIRDGLPEVGLTSDLIVGFPGETEE 313
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
+F ++ ++ ++F VH + + PR GTPAA+MK ++P+AV ++R E+ + + +
Sbjct: 314 EFQCSLAALERFRFDMVHTAAYSPRQGTPAAKMKNQIPAAVKERRLNEVNDLQTSIARQI 373
Query: 309 GME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
GR ++ + A G ++ T VL+ G G KI S W + G
Sbjct: 374 NQSLVGRTYKVLVDGPAPKGDYMEARTATDKVVLLKGAGASFGQFVTAKIDSAESWCLKG 433
Query: 367 EVIK 370
V++
Sbjct: 434 TVLR 437
>gi|115522235|ref|YP_779146.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisA53]
gi|122298059|sp|Q07V68.1|MIAB_RHOP5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|115516182|gb|ABJ04166.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisA53]
Length = 465
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 181/369 (49%), Gaps = 15/369 (4%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK---GHEVRLLHRKKLPA 68
+ VAGCV Q G+ ++ V +V G Q + E++E+ + E K
Sbjct: 83 IAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKARRDGRALETEFPIEDKFGV 142
Query: 69 LDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P+ +R + + GC C++C + RG S V ++ V+ +I +GV
Sbjct: 143 LPPPRPDAIRARGVSAFVTVQEGCDKFCSFCVVPYTRGAEMSRPVAKILDDVKRLIDNGV 202
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 184
+E+ L ++ AY + + P L A++ L G LR ++P + + L IA
Sbjct: 203 REITLIGQNVNAYHGEGPDDRPWTLGALLRHLASVPGVARLRYSTSHPLDVDDEL--IAA 260
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
P + F+H+PVQSGSDA+L+AMNR ++ D+R V+D + P + ++D I GFP
Sbjct: 261 HRELPGLMPFVHLPVQSGSDAILAAMNRRHSADDYRRVIDRFRQADPSIAFSSDFIVGFP 320
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA 303
GETD DF T+ L+ + + + ++ PRPGTPAA +++ V AV+ +R +L + ++
Sbjct: 321 GETDRDFEATLALVTQIGYAGAYSFKYSPRPGTPAAELQEMVAPAVMDQRLEQLQGLIDS 380
Query: 304 FTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
G + A +VG T V + +++G V I S+ R
Sbjct: 381 QQAAFNRASIGTTVDVLFERAARHPGQIVGRTAYLQPAHVMAADDIVGQVLPVTIHSLER 440
Query: 362 WSVFGEVIK 370
+S+ GE++K
Sbjct: 441 YSLIGELVK 449
>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
Length = 447
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 191/385 (49%), Gaps = 32/385 (8%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 72 KHEQADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVATEP 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
++ D+ K RR+ V +NV GC CTYC + RG S T E++ + +
Sbjct: 132 IQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKDMEELG 189
Query: 122 ADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPP 173
G KE+ L ++ AYGRD+ G +L L + V ++P G +R ++P
Sbjct: 190 QQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFATSHPR 247
Query: 174 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E +P
Sbjct: 248 YFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDKIREYMPD 304
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 291
I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S VK
Sbjct: 305 ASISADAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEEVKS 364
Query: 292 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTG 345
+R L T +A YL GR+E + + + D ++G TKG
Sbjct: 365 DRLQRLNHLVSTKAAQASQRYL---GRIEEVLVEDQNLKDPTQVMGRTKGNRLTFFAGDI 421
Query: 346 NML-GTSALVKITSVGRWSVFGEVI 369
N L G VKIT + +S+ G V+
Sbjct: 422 NELKGQLVKVKITEIRAFSLTGRVL 446
>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
Length = 452
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 154/305 (50%), Gaps = 12/305 (3%)
Query: 5 IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG--HEVR 59
+ K S ++ + V GC+ Q G L L+ V ++ G I V E++ + + H VR
Sbjct: 74 LPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGELIAQAFEDGDHHVR 133
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ A +P R F +PI GC C+YC + RG S E +V V
Sbjct: 134 CEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREKSRPFEQIVDEVAG 193
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EH 178
++ V+E+ L ++ +YGRDI P + + A + G +R ++P +L E
Sbjct: 194 LVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIRFTSSHPKDLLPET 251
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ +A+V P V LH+ VQSGS VL MNR YT + +V ++ E +PG+ + TD
Sbjct: 252 INAMADV---PAVMPHLHLAVQSGSTRVLKEMNRRYTREQYIDLVRSIREKIPGIALTTD 308
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSREL 297
II GFPGET+EDF QT++L +E ++ Q + R GTPAA + P V+ R L
Sbjct: 309 IIVGFPGETEEDFLQTLSLAEEVRYAQAFTFIYSKREGTPAAMIDDPTPHDVILDRFNRL 368
Query: 298 TSVFE 302
SV E
Sbjct: 369 VSVIE 373
>gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
Length = 500
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K AK+P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 124 KKAKRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 183
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 184 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 243
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 244 VGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPRDFTDDV- 301
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 302 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 360
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M +VP VV+ R L +
Sbjct: 361 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDDQVPKEVVQARYERLVA 420
Query: 300 VFEAFT 305
+ E +
Sbjct: 421 LQEEIS 426
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMQVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|406909104|gb|EKD49432.1| hypothetical protein ACD_63C00147G0003 [uncultured bacterium]
Length = 427
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 12/315 (3%)
Query: 58 VRLLHRKKLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ L H K+ L + + F +PI+ GC C YC + RG S E ++
Sbjct: 115 ISLCHEKRQKNYLSITPKYESSFSAYIPISTGCDNYCAYCVVPYVRGPETSRKAEEILAE 174
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ +I KE+ L ++ +Y +D + LL I +G+ + ++P
Sbjct: 175 AKDLIKKDYKEITLVGQNVNSY-KDGKTDFTKLLKKIARY---EGNFRIFFITSHPKDFD 230
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E L ++ V +HP + + H+P QSGS+ +L MNR+Y+ D+ ++ + + +P I+
Sbjct: 231 EKLIDV--VKKHPKLCRYFHIPFQSGSNKILEKMNRKYSREDYLQIISQIRKEIPDAAIS 288
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
TD+I GFP ET+++F +T NL++E KF +I+Q+ PRP T A ++K VP K+R
Sbjct: 289 TDVIVGFPEETNKEFGETANLMREVKFDMAYIAQYSPRPQTEAFKLKDSVPKTEKKRREA 348
Query: 296 ELTSVFEAFTPYLGME--GRVERIWITEIA--ADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
LT++ + + + G+ R+ + I + L G T Y V+ S N++G
Sbjct: 349 FLTNILKKTSLKKNKKLIGKTVRVLVNNIKPEKNKFKLSGKTDNYKTVVFGSDKNLIGEF 408
Query: 352 ALVKITSVGRWSVFG 366
VKI W V G
Sbjct: 409 VNVKIIDAMAWGVRG 423
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|374855432|dbj|BAL58289.1| hypothetical conserved protein [uncultured Chloroflexi bacterium]
Length = 427
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 171/324 (52%), Gaps = 32/324 (9%)
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
L R+ LP L ++R F L + GC CT+C T ARG SY + +V RV+
Sbjct: 114 LEREPLPGL---RLRTRAF---LKVQDGCNNHCTFCITTVARGAARSYPIHEVVQRVQGA 167
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV--AELPPDGSTMLRIGMTNPPFILE- 177
+ G KE+ L+ G++G++ G++L L+ AI+ +LP LR+ P + E
Sbjct: 168 VESGTKEIVLTGVHLGSWGQEWGLHLRHLIQAILQDTDLP-----RLRLSSLEPWDLDER 222
Query: 178 --HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
HL E + RH LH+P+QSGS +VL M R+ T FR +V ++P M I
Sbjct: 223 FFHLWENPRLCRH------LHLPLQSGSRSVLRRMARKTTPESFRALVQAARSVIPQMAI 276
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 294
TDII GFPGET+E+F ++++ ++E +F H+ + PRPGT A R+ +VP V K+R+
Sbjct: 277 TTDIIAGFPGETEEEFRESLSFVEEMEFAGGHVFTYSPRPGTAATRLPHQVPLEVRKQRN 336
Query: 295 RELTSVF----EAFTP-YLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
++F E + +LG R E +W I E + G + G YV+++ + +
Sbjct: 337 AAYRALFARQAENYRQRFLGQ--REEVLWESILERSEQGWRIEGLGSHYVRIVAYADRPL 394
Query: 348 LGTSALVKITSVGRWSVFGEVIKI 371
+ V+IT + ++ G ++ +
Sbjct: 395 WNQISQVQITRLEGETLGGHILPV 418
>gi|334339722|ref|YP_004544702.1| MiaB family RNA modification protein [Desulfotomaculum ruminis DSM
2154]
gi|334091076|gb|AEG59416.1| RNA modification enzyme, MiaB family [Desulfotomaculum ruminis DSM
2154]
Length = 436
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 178/359 (49%), Gaps = 20/359 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q + + E+ GV +V G + +V +VE KG + ++ R
Sbjct: 74 IAVTGCYAQTAPGKVLEIPGVDLVIGTRDRGSIVTLVESCRKGGKPVNAVQDIMQRADFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L +P V + K L I GC C+YC +ARG + S E+++ R +I G +E
Sbjct: 134 ELPIP-VDQGKTRAFLKIQEGCNSYCSYCIIPYARGPVRSRLPENVLSSARELIEQGFRE 192
Query: 128 VWLSSEDTGAYGRDIGVNLPIL--LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
+ L+ GAYG+D L L +A +P G LR+G P I + I V
Sbjct: 193 IVLTGIHIGAYGQDFAERQKDLAWLVEQLAVIP--GLRRLRLGSVEPHDI--NFALIQAV 248
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
HP V LH+P+QSG D +L+ M R Y +F ++ + + + G+ I +D+I GFPG
Sbjct: 249 AAHPNVCRHLHIPLQSGDDRILNRMKRRYNSHEFERLITVIYDNIEGVAITSDVIVGFPG 308
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF 304
ET++++ T+ ++ KF +H+ ++ PR GTPAA +V ++RSR L + ++
Sbjct: 309 ETEKNYQNTLRMVTRAKFAGIHVFKYSPRQGTPAAEFDDQVSPEEKEERSRRLIRLGQSL 368
Query: 305 TPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
++ +E + D L GHT Y++VL P + ++ G +VK+ +G
Sbjct: 369 AAEFAAGQIDKDLEVLVEQPFEQDDRLLEGHTDTYLKVLFPGSPSLKGE--MVKVHILG 425
>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
DSM 16994]
gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
DSM 16994]
Length = 433
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 183/383 (47%), Gaps = 32/383 (8%)
Query: 4 LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 60
+ K K A + V GC G +K V+ V G + + ++ +V+ + EV +
Sbjct: 65 VFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-RAVEVEI 123
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ + A R + + + I++GC CT+C RG S + +V VR
Sbjct: 124 DYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEVRKA 181
Query: 121 IADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP-PF 174
+ +G KEV+L ++ YGR +N LL + A + RI T+P PF
Sbjct: 182 VENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSA-----VEGLERIRFTSPHPF 236
Query: 175 IL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L+E A R+P + +H+P+QSGS +L AM R YT F L ELVP
Sbjct: 237 HMDDEFLEEFA---RNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKLRELVPD 293
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
+ I+TDII FPGE+D DF T++++KE +F QV ++ PRP T A V V +
Sbjct: 294 VSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNV---VDSE 350
Query: 293 RSRELTSVFEAFTPYL------GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
S +A+ + G+ G+ ++ E+ +DG ++ G + + + V +
Sbjct: 351 LGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEELRSDG-YVAGRSDNNIMIKVKGSEE 409
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
LG A VKIT V R +GE+I
Sbjct: 410 WLGKIARVKITEVSRSVQYGEII 432
>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
Length = 458
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 181/370 (48%), Gaps = 23/370 (6%)
Query: 15 LVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPAL 69
+ +AGC+ Q ++ K+ + I+G + ++VE+V+E K + + + + A
Sbjct: 96 IAIAGCMAQKDKEKLFKKAPHIDLIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAP 155
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P +RR K +PI GC CTYC + RG S + ++ + + DG KE+
Sbjct: 156 DVPTIRRGKISAWVPIMYGCNNFCTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEIT 215
Query: 130 LSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVL 186
L ++ +YG D + LL A+ T+ R+ MT+ P + K I +L
Sbjct: 216 LLGQNVNSYGNDTKEYGDFADLLKAV-----DQVETIERVRYMTSHPRDIND-KVIDTIL 269
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ H+PVQSGSD +L MNR YT +R +V + + +P + TDII GFPGE
Sbjct: 270 NSKKICDHFHLPVQSGSDTILKMMNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGE 329
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
TDE F +T+ +KE +F + + R GTPAA M +VP V K+R ++L V +
Sbjct: 330 TDELFQETLEFLKEIRFDASYTFLYSKRSGTPAATMADQVPLVVKKERLQKLMDVQNDIS 389
Query: 306 PYLGMEGRVERIWITEIAA-----DGIHLVGHTKGYVQVLVPSTGN-MLGTSALVKITSV 359
L + + +T I D L+G T VL G +G A +KIT+
Sbjct: 390 --LEINQQFTDTVVTVIVEGPSQRDENRLIGRTTTNKIVLWDKQGTEEVGQLANIKITTA 447
Query: 360 GRWSVFGEVI 369
W + G++I
Sbjct: 448 QTWILKGKLI 457
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 442
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 184/371 (49%), Gaps = 26/371 (7%)
Query: 17 VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
+ GC+ Q ++E+ I G I +V E++++ K E V + +++
Sbjct: 81 IGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVEVWDQEEGLIP 140
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP R ++ + I GC CTYC + RG S +E+++ + A+GVKEV
Sbjct: 141 DLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEKLAAEGVKEVT 200
Query: 130 LSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL----KEIA 183
L ++ +YG D+ ++ P+LL + D +R ++P E L K +
Sbjct: 201 LLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSEKLLLAIKNLE 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+V +H +H+P+QSGS+ +L MNR Y+ + V + +P I+TD I GF
Sbjct: 258 KVAKH------IHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQNKMPEAAISTDFIVGF 311
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE 302
PGE+DEDF QT+ L+KE +F + + PR GTPAA R ++ V K+R +L +
Sbjct: 312 PGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIAEEVKKERLNKLMDIQN 371
Query: 303 --AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV-LVPSTGNMLGTSALVKITSV 359
++ + G++++I +T + ++ G ++ + +++G VKI S
Sbjct: 372 RISYQKNQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICFINKRPDLIGKIVKVKIDSA 431
Query: 360 GRWSVFGEVIK 370
W++ G V++
Sbjct: 432 KSWTLQGTVVE 442
>gi|384154942|ref|YP_005537757.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
gi|345468496|dbj|BAK69947.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
Length = 436
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 170/342 (49%), Gaps = 16/342 (4%)
Query: 36 IVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 94
+VG + I ++ +VV+ +KG EV + + + + + NK+ + I+VGC CT
Sbjct: 102 VVGARNISKIKDVVD--VKGAVEVSIDNDES--TYEFSTAKTNKYRASVNISVGCDKKCT 157
Query: 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154
YC RG S E +V +V + G EV L ++ +YGR +
Sbjct: 158 YCIVPSTRGEEISIPPEMIVEQVCKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKL 217
Query: 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 214
+ + RI T+P + + I E ++P + +H+P+QSGS +VL AM R Y
Sbjct: 218 LQDVSKIDGLERIRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGY 277
Query: 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274
+ F + ELVP ++I TDII FPGET EDF T++++++ KF Q+ ++ PR
Sbjct: 278 SKEWFLNRASKMRELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPR 337
Query: 275 PGTPAARM--KKVPSAVVKKRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGI 327
PGT A + K++P + +R L + E YL + G I + + +G
Sbjct: 338 PGTEALNLKDKELPDEIGSQR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG- 393
Query: 328 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ G+T Y+QV + +LG VKIT V R S+ GEV+
Sbjct: 394 EVCGYTDNYLQVFAKGSDELLGKFVNVKITDVTRTSLKGEVV 435
>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
Length = 433
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 175/341 (51%), Gaps = 13/341 (3%)
Query: 36 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 94
++G + I V EV+E G +V L + LP+ R + + I GC CT
Sbjct: 97 VLGSRSILAVAEVLERAASGEKVIYLEDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCT 156
Query: 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNA 152
YC + RG S +E ++ V+ + GVKE+ ++ AYG+D+ G +L L+N
Sbjct: 157 YCIVPYTRGREKSRPMEDVLAEVKKLAESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK 216
Query: 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 212
+E+ +G + + P I + L I V ++P H+P+QSGS+ +L MNR
Sbjct: 217 -ASEI--EGIERIWFLTSYPTDITDEL--IETVAKNPKAAKSFHIPIQSGSNRILRLMNR 271
Query: 213 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 272
YT F +V+ + ++VP I++D+I GFP ET+ED QTV ++K +F +++++ +
Sbjct: 272 RYTREQFAELVEKIRKIVPQASISSDVIVGFPTETEEDHQQTVEIVKTLQFERLNLAIYS 331
Query: 273 PRPGTPAARMKK--VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIH 328
PRPGT A++ K VP V +R EL + + L +V +++ DG++
Sbjct: 332 PRPGTVASKYFKDDVPREVKVRRLNELLELQKEINKKLNERYLNQVVELFVEGKTKDGLY 391
Query: 329 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ + +L ++ +G LVKIT + ++GE++
Sbjct: 392 YGRDIRNKI-ILFKASALQIGQRVLVKITRITAGPLYGELV 431
>gi|357402124|ref|YP_004914049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768533|emb|CCB77246.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 519
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +++ V +V G I R+ ++E E ++
Sbjct: 70 KKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIAEEAQVEI 129
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 130 AESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 189
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ADGV EV L ++ AYG DIG + + A +G +R +P + +
Sbjct: 190 VADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPRDFTDDV- 247
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P I+TDII
Sbjct: 248 -IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDAAISTDII 306
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+ DF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L +
Sbjct: 307 VGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQERYERLVA 366
Query: 300 VFEAFT 305
+ E +
Sbjct: 367 LQEEIS 372
>gi|312144012|ref|YP_003995458.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904663|gb|ADQ15104.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 440
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 182/367 (49%), Gaps = 25/367 (6%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEV--R 59
AK + + V GC Q + E+ +S I+G ++V V++ L G V
Sbjct: 68 AKRSNNDSLVAVVGCYTQAFPE--EVSSISEIDFIMGSSNKSKIVNKVKKLLAGKNVDNE 125
Query: 60 LLHRKKLPALDLPKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ ++L + +++R N + I GC C+YC +ARG + S +S++ +
Sbjct: 126 IKEYQELKDYEDLEIKRLSNTTRANIKIEDGCNQFCSYCIIPYARGPVRSREQKSILNEI 185
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +I GVKE+ L+ GAYG D G N L + + + LR+ I
Sbjct: 186 KKMIGQGVKEIILTGTHLGAYGTDKG-NKTALTDLMQQLTELNNLQRLRLSSIEGTEI-- 242
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
K I + + LH+P+QSGS+ +L AM R YT +F+ ++ + +P + I T
Sbjct: 243 DAKMIDLIAENDIFCPHLHLPLQSGSNEILKAMQRPYTAEEFKETINKIRAKIPDIAITT 302
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 296
DII GFPGE ++ F QT+ L+KE KF ++H+ F R GTPA +M K+ ++KK S++
Sbjct: 303 DIIVGFPGENEKTFKQTLELVKELKFSKIHVFPFSAREGTPAFKMDNKLNGNIIKKFSKK 362
Query: 297 L----TSVFEAFTP-YLGMEGRVERIWITEIAADGI--HLVGHTKGYVQVLVPSTGNMLG 349
L S+ E + +LG +V + E A D L G+T Y+++LV N+
Sbjct: 363 LRFINKSLMEEYQANFLGQNKKV----LIEEARDQQTGFLTGYTDNYLKILVEGPDNLKN 418
Query: 350 TSALVKI 356
T VK+
Sbjct: 419 TLREVKL 425
>gi|345009772|ref|YP_004812126.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Streptomyces violaceusniger Tu 4113]
gi|344036121|gb|AEM81846.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces violaceusniger Tu 4113]
Length = 500
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 14/305 (4%)
Query: 11 AKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
A++P + V GC+ Q RD +K+ V +V G I + ++E E ++ +
Sbjct: 77 ARRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERARVQEEAQVEIAE 136
Query: 65 KLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L A LP R + + + I+VGC CT+C RG ++ V T++A
Sbjct: 137 SLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVETLVA 196
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFILEHLKE 181
+GV E+ L ++ AYG DIG + + A +G +R +P F + +
Sbjct: 197 EGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGKVEGLERVRFTSPHPRDFTDDVISA 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+AE V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII
Sbjct: 256 MAETEN---VMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAMPDAAISTDIIV 312
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M +VP AVV++R L ++
Sbjct: 313 GFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQVPKAVVQERYERLVAL 372
Query: 301 FEAFT 305
E +
Sbjct: 373 QEEIS 377
>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
Length = 437
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH +
Sbjct: 64 LKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHTHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 124 ISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E + +
Sbjct: 239 MSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + + R
Sbjct: 297 VTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
+ L V + L MEG+V I + + D G T G VL P ++ +G
Sbjct: 357 LQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G ++K
Sbjct: 417 QTVPAHIDKAQTWVCYGSIVK 437
>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8801]
gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
Length = 451
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 184/374 (49%), Gaps = 26/374 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V + D+
Sbjct: 85 LIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEPIHIIE-DI 143
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC C+YC + RG S T E+++ + + G KEV
Sbjct: 144 TKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEMELLGKQGYKEVT 202
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G + L + + G +R ++P + E L
Sbjct: 203 LLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHPRYFTERLIAAC 262
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L C + H+P QSG + +L AM R YT +R ++D + + +P I+ D I GF
Sbjct: 263 QELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPDASISADAIVGF 320
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSVF- 301
PGET+E F T+ L+++ F Q++ + + PRPGTPAA S VK R + L +
Sbjct: 321 PGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVA 380
Query: 302 ----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALVK 355
E YL GR+E + + + D ++G T+G N L G VK
Sbjct: 381 QKAAERSQRYL---GRIEEVLVEDQNPKDSTQVMGRTRGNRLTFFKGDINQLKGRLIKVK 437
Query: 356 ITSVGRWSVFGEVI 369
IT V +S+ GE++
Sbjct: 438 ITEVRAFSLTGEIV 451
>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
Length = 458
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 182/370 (49%), Gaps = 23/370 (6%)
Query: 15 LVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPAL 69
+ +AGC+ Q ++ K+ + I+G + ++VE+V+E K + + + + A
Sbjct: 96 IAIAGCMAQKDKEKLFKKAPHIDLIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAP 155
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P +RR K +PI GC CTYC + RG S + ++ + + DG KE+
Sbjct: 156 DVPTIRRGKISAWVPIMYGCNNFCTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEIT 215
Query: 130 LSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVL 186
L ++ +YG D + LL A+ T+ R+ MT+ P + K I +L
Sbjct: 216 LLGQNVNSYGNDTKEYGDFADLLKAV-----DQVETIERVRYMTSHPRDIND-KVINTIL 269
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ H+PVQSGSDA+L MNR YT +R +V + + +P + TDII GFPGE
Sbjct: 270 NSKKICDHFHLPVQSGSDAILKMMNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGE 329
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
+DE F +T+ +KE +F + + R GTPAA M ++P V K+R ++L V +
Sbjct: 330 SDELFQETLEFLKEIRFDASYTFLYSKRSGTPAATMTDQIPLVVKKERLQKLMDVQNDIS 389
Query: 306 PYLGMEGRVERIWITEIAA-----DGIHLVGHTKGYVQVLVPSTGN-MLGTSALVKITSV 359
L + + +T I D L+G T VL G +G A +KIT+
Sbjct: 390 --LEINQQFTDTVVTVIVEGPSQRDENRLMGRTTTNKIVLWDKQGTEEVGQLANIKITTA 447
Query: 360 GRWSVFGEVI 369
W + G++I
Sbjct: 448 QTWILKGKLI 457
>gi|154488819|ref|ZP_02029668.1| hypothetical protein BIFADO_02127 [Bifidobacterium adolescentis
L2-32]
gi|154082956|gb|EDN82001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium
adolescentis L2-32]
Length = 484
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 181/370 (48%), Gaps = 22/370 (5%)
Query: 15 LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEET-LKGH-EVRLLHRKKLPAL 69
+ V GC+ Q R+ K+ V ++ G + I + +++++ ++GH +V++
Sbjct: 107 IAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQACIEGHAQVKVQEELNYFPS 166
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R +K + I+VGC CT+C RG ++ +R + +G KEV
Sbjct: 167 QLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVT 226
Query: 130 LSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ ++G IG LL A E+ DG +R +P + + IA +
Sbjct: 227 LLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--DGLERVRFTSPHPAAFTDDV--IAAMAE 281
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPGET
Sbjct: 282 TPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGET 341
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 306
+EDF +T+ +++E +F + PRPGTPAA M++VP VV+ R L ++ E T
Sbjct: 342 EEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPHDVVQDRFERLVALQERITEE 401
Query: 307 -YLGMEGRVERIWITEIA----ADGIHLVGHTKG--YVQVLVPSTGNM--LGTSALVKIT 357
EGR + +T + A + G K V V VP +M +G +T
Sbjct: 402 NLKTFEGRDVEVMVTGASGKKDAATHRVTGREKTGVLVHVGVPEGESMPQVGDFVTATVT 461
Query: 358 SVGRWSVFGE 367
GR ++ +
Sbjct: 462 HAGRHNLIAD 471
>gi|411006298|ref|ZP_11382627.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
globisporus C-1027]
Length = 497
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 73 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQIEIA 132
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 133 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 192
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 193 AEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 249
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TDII
Sbjct: 250 IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPDAAISTDIIV 309
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+++
Sbjct: 310 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLSAL 369
Query: 301 FEAFT 305
E +
Sbjct: 370 QEQIS 374
>gi|365866997|ref|ZP_09406587.1| hypothetical protein SPW_6891 [Streptomyces sp. W007]
gi|364003528|gb|EHM24678.1| hypothetical protein SPW_6891 [Streptomyces sp. W007]
Length = 497
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 13/307 (4%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 73 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQIEIA 132
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 133 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 192
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
A+GV E+ L ++ AYG DIG LL A A +G +R +P + +
Sbjct: 193 AEGVSEITLLGQNVNAYGSDIGDREAFSKLLRACGA---IEGLERVRFTSPHPRDFTDDV 249
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
IA + P V LH+P+QSGSD +L AM R Y F +++ + +P I+TDI
Sbjct: 250 --IAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGIIEKVRAAMPDAAISTDI 307
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+
Sbjct: 308 IVGFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLS 367
Query: 299 SVFEAFT 305
++ E +
Sbjct: 368 ALQEQIS 374
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNSEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|340354669|ref|ZP_08677371.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339623192|gb|EGQ27697.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 456
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 21/373 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV IV G Q +++ ++E+ + + VR ++ +
Sbjct: 83 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGLIEQFREERQPINAVRNIMKNRVYE 142
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + + ++ G E
Sbjct: 143 ELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIHQAQQLVDAGYLE 201
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ NL LL + E G LRI + + E+ +VL
Sbjct: 202 IVLTGIHTGGYGEDLKDYNLARLLRDL--EKNVKGLKRLRISSIEASQLTD---EVIDVL 256
Query: 187 RHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + LH+P+QSGS+ VL M R+YT+ F + L E +P + I +D+I GFPG
Sbjct: 257 RESKIIVRHLHIPIQSGSNTVLKRMRRKYTMEFFSERLVRLNEALPQLAITSDVIVGFPG 316
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N I+++KF ++H+ + R GTPAARM+ ++ V +R L ++ +
Sbjct: 317 ETEEEFMETYNFIRDHKFSELHVFPYSKRTGTPAARMEDQIDEGVKNERVHRLITLNDQL 376
Query: 305 TPYLG--MEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
EG V + E + D G+T Y++V++P+ M+G VK+T
Sbjct: 377 AKDYAARFEGEVLEVIPEERYKLDPDKNLFEGYTDNYLKVVLPADETMVGQIVRVKLTKA 436
Query: 360 GRWSVFGEVIKIL 372
G G+ ++I+
Sbjct: 437 GYPYNEGQPVRII 449
>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
Length = 447
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 192/383 (50%), Gaps = 28/383 (7%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K KSA L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ +G+++ +
Sbjct: 73 KQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-VATE 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
D+ K RR+ + +NV GC C+YC + RG S T E++ + +
Sbjct: 132 PIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEMEILA 190
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPP 173
G +EV L ++ AYGRD+ + P L V ++P G +R ++P
Sbjct: 191 EQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATSHPR 248
Query: 174 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L + AE+ P V H+P QSG + VL AM+R YT +R +VD + +P
Sbjct: 249 YFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKAMSRGYTHEKYRRIVDKIRHYLPD 305
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 291
I+ D I GFPGET+E F T+ L+++ +F Q++ + + PRPGTP+A+ + S VK
Sbjct: 306 AAISADAIVGFPGETEEQFQNTLRLVEDVEFDQLNTAAYSPRPGTPSAKWENQLSDEVKS 365
Query: 292 ---KRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 347
+R L S A ++ R E + + + D ++G T+ N
Sbjct: 366 DRLQRLNHLVSTKAAARSRRYLD-RTEEVLVEGQNPKDPSQVMGRTRTNRLTFFAGDINQ 424
Query: 348 L-GTSALVKITSVGRWSVFGEVI 369
L G VKIT V +S+ GE++
Sbjct: 425 LRGKQVPVKITEVRAFSLTGEMV 447
>gi|429196007|ref|ZP_19187998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptomyces ipomoeae
91-03]
gi|428668271|gb|EKX67303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Streptomyces ipomoeae
91-03]
Length = 509
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 155/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 84 KKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQVEI 143
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 144 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEAL 203
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 204 VGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV- 261
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 262 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 320
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R L +
Sbjct: 321 VGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAATMENQIPKQVVQARYERLVA 380
Query: 300 VFEAFT 305
+ E +
Sbjct: 381 LQEEIS 386
>gi|323702404|ref|ZP_08114069.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
DSM 574]
gi|323532710|gb|EGB22584.1| RNA modification enzyme, MiaB family [Desulfotomaculum nigrificans
DSM 574]
Length = 441
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 180/359 (50%), Gaps = 20/359 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +VG + R+V++VE +K ++ +
Sbjct: 74 IAVTGCYAQTSPGEVLEIPGVDLVVGTRDRARIVKLVEGHVKNKGPVNAVEDIMQSECFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L +P + K L I GC C YC +ARG + S E+++ ++ G +E
Sbjct: 134 ELPVP-TEQGKARAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVLKAATELVQQGYQE 192
Query: 128 VWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+ L+ GAYG+D ++L L+ + A +P G LR+G P I L I
Sbjct: 193 IVLTGIHIGAYGQDFTAQNIDLAWLVERLAA-VP--GLRRLRLGSVEPHDINTAL--IEA 247
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V HP + LH+P+QSG D +L+ M R Y ++ ++ + VPG+ I +D+I GFP
Sbjct: 248 VANHPNICRHLHIPLQSGDDQILAKMRRRYDTREYNRLIAEIYRKVPGVAITSDVIVGFP 307
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+ +F T+ + + KF ++H+ ++ PR GTPAA +VP ++RSR L + E
Sbjct: 308 GETEANFQNTLRTVAKAKFARIHVFKYSPRKGTPAAEFADQVPPEEKEERSRRLIELGEQ 367
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G+ + + + + + L GHT Y++V+ P+ ++ G A V I +V
Sbjct: 368 LAHEFARIQVGKDLEVLVEQPSHEYTPLWEGHTDTYLKVIFPADESVRGQIAKVHIDNV 426
>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
Length = 434
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 154/292 (52%), Gaps = 24/292 (8%)
Query: 83 LPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141
+ + GC CTYC + ARG + S +E ++ G KE+ ++ + G YG+D
Sbjct: 141 IKVEDGCDNGCTYCAIRFARGTKVRSKPLELFKEEFEKMVIKGYKEIVITGVNLGKYGKD 200
Query: 142 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQ 200
IG L LL IV +P G +R+ N I + E+ EV R +P + LH+ VQ
Sbjct: 201 IGTTLVDLLK-IVEHVP--GDYRVRLSSLNVEDITD---ELVEVFRDNPRLCPHLHISVQ 254
Query: 201 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260
SGSD VL M R Y+ SDF VV+ L + P I TDII GFPGETDEDF +TV L++E
Sbjct: 255 SGSDRVLKRMGRRYSSSDFLKVVEKLRSINPDFSITTDIIVGFPGETDEDFLKTVKLLEE 314
Query: 261 YKFPQVHISQFYPRPGTPAARM--------KKVPSAVVKKRSRELTSVFEAFTPYLGMEG 312
+F +VHI ++ PRPGTPA+ KK ++K++++E++ ++ M
Sbjct: 315 VEFSRVHIFRYSPRPGTPASTFSDAVPEHKKKERLNILKEKAKEVSHRYKR-----RMVN 369
Query: 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
+ R+ A G+ L G+ + YV+ G+ +G V++ S+ V
Sbjct: 370 KKRRVLAEWYIAKGV-LSGYDEYYVK--HEFVGDGIGVFHNVRVKSLSEEGV 418
>gi|334137678|ref|ZP_08511107.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF7]
gi|333604842|gb|EGL16227.1| tRNA methylthiotransferase YqeV [Paenibacillus sp. HGF7]
Length = 453
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 190/376 (50%), Gaps = 23/376 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ + GV +V G Q D+++ +V++ + + VR ++ ++
Sbjct: 73 VAVTGCYAQTSPAEIMAIPGVDLVIGTQDRDKIISLVKQFQQERQPINAVRNIMKTRQFE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C +RG + S ES+V + ++ G KE
Sbjct: 133 ELDVPDFA-DRTRAFLKIQEGCNNFCTFCIIPWSRGLMRSREPESVVKQAHMLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ +L LL + DG +RI I + + E+
Sbjct: 192 IVLTGIHTGGYGEDMENYSLARLLWDLD---KVDGLNRIRISSIEASQITDEVLEVLGAS 248
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
C + LH+P+Q+G+D VL+ M R+YT +++ ++ + + +PG I TDII GFPGE
Sbjct: 249 DKMCRH--LHIPLQAGNDQVLARMRRKYTTAEYGRKIELIHKALPGAAITTDIIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV----- 300
TDE F + +++ KF ++H+ + R GTPAARM ++ + R EL +
Sbjct: 307 TDEMFREGYAFMEQMKFAEMHVFPYSKRTGTPAARMLDQIDEEIKNARVHELIDLSENMQ 366
Query: 301 FEAFTPYLGMEGRV--ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 358
E Y+G + V ER + A D L+G++ Y+Q++ + M+G V++
Sbjct: 367 LEYAKQYVGKQLEVIPERAY-KGAAEDSGLLMGYSDNYMQMVFEAPEEMIGRVCTVEVQE 425
Query: 359 VGRWSVFGEVIKILNQ 374
G G++I++ +
Sbjct: 426 AGVNESKGKLIRVAEE 441
>gi|49483824|ref|YP_041048.1| hypothetical protein SAR1653 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425701|ref|ZP_05602125.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428362|ref|ZP_05604760.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430999|ref|ZP_05607379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433687|ref|ZP_05610045.1| RNA modification protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436601|ref|ZP_05612645.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
gi|282904158|ref|ZP_06312046.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
gi|282905985|ref|ZP_06313840.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282911214|ref|ZP_06319016.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914383|ref|ZP_06322169.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
gi|282919352|ref|ZP_06327087.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus C427]
gi|282924677|ref|ZP_06332345.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus C101]
gi|293503457|ref|ZP_06667304.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|293510474|ref|ZP_06669180.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus M809]
gi|293531014|ref|ZP_06671696.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
gi|295428154|ref|ZP_06820786.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590880|ref|ZP_06949518.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|384867450|ref|YP_005747646.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|415682379|ref|ZP_11447695.1| hypothetical protein CGSSa00_07410 [Staphylococcus aureus subsp.
aureus CGS00]
gi|418564873|ref|ZP_13129294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|418582503|ref|ZP_13146581.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597148|ref|ZP_13160681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|418601034|ref|ZP_13164482.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|418892306|ref|ZP_13446419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898211|ref|ZP_13452281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418901081|ref|ZP_13455137.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909428|ref|ZP_13463424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917474|ref|ZP_13471433.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923258|ref|ZP_13477174.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982582|ref|ZP_13530290.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986248|ref|ZP_13533933.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241953|emb|CAG40648.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271395|gb|EEV03541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275203|gb|EEV06690.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278429|gb|EEV09065.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281780|gb|EEV11917.1| RNA modification protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283952|gb|EEV14075.1| RNA modification protein [Staphylococcus aureus subsp. aureus M876]
gi|282313512|gb|EFB43907.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus C101]
gi|282317162|gb|EFB47536.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus C427]
gi|282321564|gb|EFB51889.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M899]
gi|282324909|gb|EFB55219.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282331277|gb|EFB60791.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595776|gb|EFC00740.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus C160]
gi|290920282|gb|EFD97348.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus M1015]
gi|291095123|gb|EFE25388.1| MiaB tRNA modifying enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|291466838|gb|EFF09358.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus M809]
gi|295128512|gb|EFG58146.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575766|gb|EFH94482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|312437955|gb|ADQ77026.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|315195479|gb|EFU25866.1| hypothetical protein CGSSa00_07410 [Staphylococcus aureus subsp.
aureus CGS00]
gi|371976010|gb|EHO93302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|374395384|gb|EHQ66651.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|374400281|gb|EHQ71400.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|377702478|gb|EHT26800.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704292|gb|EHT28602.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377704863|gb|EHT29172.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377710913|gb|EHT35151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377730600|gb|EHT54667.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377735217|gb|EHT59253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750648|gb|EHT74586.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377752075|gb|EHT75999.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|377761246|gb|EHT85122.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 448
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 193/392 (49%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+E+F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
Length = 505
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + + V GC+ Q RD K V +V G I ++ ++E E ++
Sbjct: 111 KTRRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 170
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + ++VGC CT+C RG ++ V ++
Sbjct: 171 ESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRTGDILAEVEALV 230
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 231 AEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 287
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD VL AM R Y F ++++ + +P I TDII
Sbjct: 288 IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAIPDAAITTDIIV 347
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P VV++R L ++
Sbjct: 348 GFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEVVQERYMRLVAL 407
Query: 301 FEAFT 305
E +
Sbjct: 408 QEEIS 412
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 12/305 (3%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ VR N + + + GC CTYC RG S ++ES++ VR ++ADGVKE+
Sbjct: 137 EFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESILEEVRWLVADGVKEIH 196
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLRH 188
L ++ A+G+DI ++ LL VAE+P G +R +P + E + K + ++
Sbjct: 197 LLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPSDMDERIAKAMGDI--- 250
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P + LH+PVQSGS+ +L M R YT ++ + L E VPG+ +TDII GFP ET+
Sbjct: 251 PQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREYVPGITFSTDIIVGFPTETE 310
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPY 307
EDF +T++++++ +F QV ++ PRP TPAA M+ ++P V R L S+ +
Sbjct: 311 EDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQIPDEVKTDRMSRLLSLQKEILAE 370
Query: 308 LG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
+ EG V+ + + E DG LVG T+ V V + +MLG + V+IT +S+
Sbjct: 371 IARSYEGTVQEV-LLESWQDG-KLVGRTRTNRWVSVEGSEDMLGKTVRVRITRSQPFSME 428
Query: 366 GEVIK 370
G +++
Sbjct: 429 GIILE 433
>gi|386358193|ref|YP_006056439.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365808700|gb|AEW96916.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 535
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +++ V +V G I R+ ++E E ++
Sbjct: 73 KKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIAEEAQVEI 132
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 133 AESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 192
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ADGV EV L ++ AYG DIG + + A +G +R +P + +
Sbjct: 193 VADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPRDFTDDV- 250
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P I+TDII
Sbjct: 251 -IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDAAISTDII 309
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+ DF QT+++++E +F Q Q+ RPGTPAA M ++P VV++R L +
Sbjct: 310 VGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQERYERLVA 369
Query: 300 VFEAFT 305
+ E +
Sbjct: 370 LQEEIS 375
>gi|293376256|ref|ZP_06622499.1| MiaB-like protein [Turicibacter sanguinis PC909]
gi|325845151|ref|ZP_08168460.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
gi|292645148|gb|EFF63215.1| MiaB-like protein [Turicibacter sanguinis PC909]
gi|325488816|gb|EGC91216.1| tRNA methylthiotransferase YqeV [Turicibacter sp. HGF1]
Length = 434
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 192/374 (51%), Gaps = 30/374 (8%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALD 70
+ V GC Q +++ ++EGV IV G D++ ++V++ + + ++ + K+ +
Sbjct: 73 MCVMGCYAQTKPKEIMDIEGVDIVIGTHGRDQIPQLVQKYREERQPISQIQNVFKVDGFE 132
Query: 71 LPKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
V + ++ L I GC CTYC ARG + S E ++ +V+ ++A+G EV
Sbjct: 133 TLNVSQFSDRTRATLKIQDGCNNFCTYCIIPWARGTVRSQKPEIVIDQVKQLVANGHCEV 192
Query: 129 WLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIG------MTNPPFILEHLKE 181
L+ T AYG D+ + LL ++ DG +RI MT+ ++ +K
Sbjct: 193 VLTGIHTAAYGEDLEDYSFGKLLQDLIK---IDGLKRIRISSIEASEMTDD--VITAMKM 247
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+++ H LH+P+Q+GS+ +L M R YTL++F V L EL + I TD+I
Sbjct: 248 SDKIVNH------LHMPLQAGSNEILKGMKRPYTLAEFEAKVKELRELFDNLAITTDVIV 301
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+E FN+TV IK F ++H+ + R GTPAARM+ +VP V R +L ++
Sbjct: 302 GFPGETEELFNETVETIKRIGFSELHVFPYSVRNGTPAARMENQVPEMVKSMRVNKLLAL 361
Query: 301 FEAFTPYLG--MEGRVERIWITEIA--ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
E EG++ ++ E + +G +LVGH YV+V +++G VK+
Sbjct: 362 SEQLAKEYASSCEGKILQVIPEEASHTKEG-YLVGHASNYVKVEFKGETDLIGEVVPVKV 420
Query: 357 TSVGRWSVFGEVIK 370
GE++K
Sbjct: 421 VKADYPICLGEIVK 434
>gi|291448226|ref|ZP_06587616.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
gi|291351173|gb|EFE78077.1| RNA modification enzyme [Streptomyces roseosporus NRRL 15998]
Length = 506
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 82 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQIEIA 141
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 142 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 201
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 202 AEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 258
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD++L AM R Y F +++ + +P I+TDII
Sbjct: 259 IAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGIIEKVRAAMPDAAISTDIIV 318
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+++
Sbjct: 319 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLSAL 378
Query: 301 FEAFT 305
E +
Sbjct: 379 QEQIS 383
>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 515
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ L++ V +V G I R+ +++E K V + ++
Sbjct: 145 VCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKAMVVEVWSKEGDVIE 204
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE+
Sbjct: 205 SLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRELAAKGYKEIT 264
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ +L +R ++P + L E+ + +
Sbjct: 265 LLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDFDDRLIEV--LAKKG 321
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+YT + +V + +P + ++TDII GFP ET+E
Sbjct: 322 NLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVALSTDIIVGFPNETEE 381
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L KE F + + PR GTPAARMK +P V K+R + L + A++
Sbjct: 382 QFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERLQRLNELVNAYSKAA 441
Query: 309 --GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
EG+V + + E + L G+T+ V + +G VKIT WS+
Sbjct: 442 MEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKLVQVKITKAKTWSLD 501
Query: 366 GEVIKI 371
GE++ +
Sbjct: 502 GEMVAV 507
>gi|373454824|ref|ZP_09546687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
gi|371935520|gb|EHO63266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
Length = 447
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 185/378 (48%), Gaps = 21/378 (5%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVV-EETLKGHEVRLL 61
K K+ + L +AGC+ Q ++ K +E + I+ G I + +++ E +G +
Sbjct: 76 KDKNPRMLLGIAGCMAQENKG-KLIERMPIIDFVIGPYHIHDLKDIISRENARGGHIVKT 134
Query: 62 HRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
R D L VR+++ +PI GC CTYC + RG S T++ + ++
Sbjct: 135 ERNPHSVRDYSELRSVRKSRVFAWIPIMQGCNKFCTYCIVPYVRGREISRTIDDICREIK 194
Query: 119 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
+ G KE+ L ++ +YG D G N L+ AI DG +R ++P +
Sbjct: 195 GLAETGYKEITLLGQNVNSYGLDFRNGTNFGDLIRAIDK---IDGIERVRYMTSHPRDMT 251
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
I + P V +H+PVQ GS+ +L MNR YT+ F+ +V+ + + +P + +
Sbjct: 252 --FDMIDAMAASPKVVRHMHLPVQHGSNEMLKQMNRGYTIEHFKELVNYVRQKMPDVALT 309
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
TD+I GFPGET+E +T+ L+KE +F + + PR GTPAARM+ ++ +R +
Sbjct: 310 TDLITGFPGETEEMHQETIKLLKEVRFDSAYTFIYSPRTGTPAARMENQIDDETKHRRLQ 369
Query: 296 ELTSVFEAFTPYL--GMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVP-STGNMLGTS 351
EL + L GMEG+ I I + + H G T +L P G +G +
Sbjct: 370 ELMDTQNEISLELNRGMEGKNYEIIIEGPSKQDVNHWFGRTSTNKMILFPYEEGIKVGDT 429
Query: 352 ALVKITSVGRWSVFGEVI 369
+ K+ + W + GE++
Sbjct: 430 RMAKVDTAQTWVLKGELL 447
>gi|238019356|ref|ZP_04599782.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
gi|237864055|gb|EEP65345.1| hypothetical protein VEIDISOL_01220 [Veillonella dispar ATCC 17748]
Length = 426
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 20/377 (5%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 60
K K+ L V GC+ Q ++ K + IV G I + E++EE +GH ++
Sbjct: 56 KRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHTHQINVD 115
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ LP L+ F +PI GC CTYC H RG S VE++V V +
Sbjct: 116 MDNSVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVTEL 173
Query: 121 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
A G KE+ L ++ +YG D G + L++A+ +P G +R ++P + +
Sbjct: 174 GAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHPQDMTKS 230
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
+ I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E + + + TD
Sbjct: 231 M--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVVVTTD 288
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
II GFPGET+EDF T+ L+K+ ++ + + R GTPAA M +VP V + R + L
Sbjct: 289 IIAGFPGETEEDFLATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQVPEEVKRVRLQTL 348
Query: 298 TSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LGTSAL 353
V + L MEG+V I + + D G T G VL P ++ +G +
Sbjct: 349 MDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIGETVP 408
Query: 354 VKITSVGRWSVFGEVIK 370
I W +G + K
Sbjct: 409 AYIDKAQTWVCYGTIQK 425
>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
Length = 442
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 25/302 (8%)
Query: 13 KPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKL 66
K L+V+GC+ Q ++ + E++G IVG D++ ++V+E L+G + +R+ +
Sbjct: 75 KALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQGSKPIRVGN---- 128
Query: 67 PALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
P D LP KV ++ + I GC CT+C RG S T+ES++ V +
Sbjct: 129 PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSRTMESILAEVAQLA 188
Query: 122 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+ P F E L
Sbjct: 189 EQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVRLHYAYPGFFTEEL 245
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+ + +P + ++ +P+Q D++L M R D R +V+ + E +PG+ + T I
Sbjct: 246 MDT--IASNPKICKYIDMPLQHSEDSILKRMRRPGRQRDSRELVNKIRERIPGVALRTSI 303
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGETDEDF++ + I+E KF ++ + + TPA R+ VP V + R+ L
Sbjct: 304 IVGFPGETDEDFDRLCDFIREMKFDRLGVFTYSSEEDTPATRLPDHVPDEVKEWRANTLM 363
Query: 299 SV 300
+
Sbjct: 364 EI 365
>gi|322689418|ref|YP_004209152.1| hypothetical protein BLIF_1234 [Bifidobacterium longum subsp.
infantis 157F]
gi|320460754|dbj|BAJ71374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 480
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 159/317 (50%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 103 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 160
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 161 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 220
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 221 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 275
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPG
Sbjct: 276 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIREAMPDAQISTDIIVGFPG 335
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 336 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 395
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 396 EENLATFEGRDVEVMIT 412
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 184/372 (49%), Gaps = 20/372 (5%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 143 LGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKEMVVEVWSKEGDI 202
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVRR + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 203 IENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 262
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ E+ +R ++P +HL E+ + +
Sbjct: 263 ITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDFDDHLIEV--LAK 319
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+YT ++ +V + +P + + TDII G+P ET
Sbjct: 320 GGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVALTTDIIVGYPNET 379
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF----- 301
+E F +T++L +E F + + PR GTPAA+M+ VP V K+R + L ++
Sbjct: 380 EEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNALVNELSR 439
Query: 302 EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
+A Y EG++ + + E + L G+T V + +G VKIT
Sbjct: 440 DAMKKY---EGQIVEVLVEGESKNNPDVLAGYTSKNKLVNFTGPKSAIGKIVKVKITKAK 496
Query: 361 RWSVFGEVIKIL 372
WS+ GE+++ L
Sbjct: 497 TWSLNGEMVEEL 508
>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
Length = 451
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 184/384 (47%), Gaps = 24/384 (6%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 63
K K LVVAGCV Q G + L+ + + I+G Q +R+ ++++ G+++
Sbjct: 72 KHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVATEP 131
Query: 64 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 132 VHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEELAR 190
Query: 123 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRYFT 250
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
E L + L P V H+P QSG + VL AM R YT +R +++ + +P I+
Sbjct: 251 ERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTHERYRDIINKIRGYMPHAAIS 308
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----K 292
D I GFPGET+E F T+ L+++ F Q++ + + PRP TPAA + S VK
Sbjct: 309 ADAIVGFPGETEEQFENTLRLVEDIGFDQLNTAAYSPRPQTPAAEWENQLSEEVKGDRLA 368
Query: 293 RSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML- 348
R L SV E YL G++E++ + ++ D +VG T G N L
Sbjct: 369 RLNHLVSVKAAERSQRYL---GKIEQVLVEDVNPKDATQVVGRTDGNRLTFFAGDINQLK 425
Query: 349 GTSALVKITSVGRWSVFGEVIKIL 372
G VKIT V +S+ GE + ++
Sbjct: 426 GKIVPVKITQVRAFSLTGEALTLV 449
>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
Length = 457
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 28/375 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V + D+
Sbjct: 80 LIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEPIHI-VEDI 138
Query: 72 PKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR+ V + I GC C+YC + RG S T E++ + + G KE+ L
Sbjct: 139 TKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGRQGYKEITL 198
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEI 182
++ AYGRD+ G + L + + V ++P G +R ++P + E L +
Sbjct: 199 LGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRYFTERLIKA 256
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ L P V H+P QSG + VL AM R YT +R+++ + + +P I+ D I G
Sbjct: 257 CQEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTQEKYRSIIAKIRQYMPDAAISADAIVG 314
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL- 297
FPGET+ F T+ L++E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 315 FPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLV 374
Query: 298 -TSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALV 354
T E Y GR+E + + E + ++G T+G P + G + V
Sbjct: 375 ATKAAERSERYF---GRIEEVLVEAENPKNPTQVMGRTRGNRLTFFPGKIEELQGKTVKV 431
Query: 355 KITSVGRWSVFGEVI 369
KIT +S+ GEV+
Sbjct: 432 KITEARAFSLTGEVV 446
>gi|296454331|ref|YP_003661474.1| MiaB family RNA modification protein [Bifidobacterium longum subsp.
longum JDM301]
gi|296183762|gb|ADH00644.1| RNA modification enzyme, MiaB family [Bifidobacterium longum subsp.
longum JDM301]
Length = 479
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 179/372 (48%), Gaps = 26/372 (6%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 102 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 159
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 160 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 219
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 220 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 274
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPG
Sbjct: 275 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIREAMPDAQISTDIIVGFPG 334
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 335 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 394
Query: 306 P--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGTSALVK 355
EGR + IT + D + G K V + VP + +G V
Sbjct: 395 EENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVLVHIGVPEGEPVPEIGDFVTVT 454
Query: 356 ITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 455 VTHAGRHNLLAD 466
>gi|17228807|ref|NP_485355.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc sp. PCC
7120]
gi|81772425|sp|Q8YXA3.1|MIAB_NOSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
Length = 454
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 186/377 (49%), Gaps = 28/377 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEAVHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ RR+ V +NV GC CTYC + RG S T ++ + + G KE+
Sbjct: 139 TQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEMEELGRQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L + + V ++P G +R ++P + E L K
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATSHPRYFTERLIK 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S VK +R
Sbjct: 313 VGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEEVKSDRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLGTSALV 354
L +V A M GR+E + + E D ++G T G + + G +V
Sbjct: 373 LVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTGGNRLTFFKGDIHELKGQLVMV 431
Query: 355 KITSVGRWSVFGEVIKI 371
KI V +S+ GE I++
Sbjct: 432 KINEVRAFSLTGEPIEM 448
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
Length = 451
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 28/376 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-D 70
L+VAGCV Q G + L+ + + +V G Q +++ ++E+ G++V + + + L D
Sbjct: 84 LIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGNQV--VATEAIEILED 141
Query: 71 LPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
+ K RR V +NV GC CTYC + RG S T E++ + T+ G KE+
Sbjct: 142 ITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKEMETLGQQGYKEI 200
Query: 129 WLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
L ++ AYGRD+ G +L + + G +R ++P + E L
Sbjct: 201 TLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRFATSHPRYFTERLIRA 260
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+ L P V H+P QSG + +L AM R YT +R +++ + E +P I+ D+I G
Sbjct: 261 CQEL--PKVCKHFHIPFQSGDNQILKAMARGYTREKYRGIIEKIREYMPDAAISADVIVG 318
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRELT 298
FPGET+ F +T+ L++E F V+ + + PRPGTPAA + + S VK +R L
Sbjct: 319 FPGETEAQFEKTLELVEEISFDLVNTAAYSPRPGTPAALLSEQLSETVKSDRLQRLNHLV 378
Query: 299 SV--FEAFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNML-GTSALV 354
S+ E YL GR+E + + E + H V G T+G L G V
Sbjct: 379 SIKATERRDRYL---GRIEEVLVEEKNSKNPHQVMGRTQGNSLTFFDGEIEQLRGKLVKV 435
Query: 355 KITSVGRWSVFGEVIK 370
KIT +S+ G +++
Sbjct: 436 KITETRAFSLTGVMVE 451
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPSAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNGLAVEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G + E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NNRYKGQ--------VVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|237785694|ref|YP_002906399.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758606|gb|ACR17856.1| 2-methylthioadenine synthetase [Corynebacterium kroppenstedtii DSM
44385]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 190/396 (47%), Gaps = 42/396 (10%)
Query: 5 IAKCKSAK--KP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGH 56
+ + KS K KP + V GC+ Q +D+ K V +V G I ++ ++ H
Sbjct: 49 LGQLKSVKDAKPDMQIAVGGCMAQKDKDVVVKRAPWVDVVFGTHNIGKLPTLLARAAHNH 108
Query: 57 EVRLL---HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 113
E ++ ++ P++ LP R + + + ++VGC CT+C RG +
Sbjct: 109 EAQVEIADALEQFPSV-LPAKRDSAYSGWVSVSVGCNNTCTFCIVPSLRGKEKDRRPGDI 167
Query: 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL---LNAIVAELPPDGST--MLRIG 168
+ V+T++ DGV EV L ++ AYG + P L +A L G + R+
Sbjct: 168 LAEVQTLVDDGVSEVTLLGQNVNAYG--VHFEDPTLERDRSAFSKLLRACGDIEGLERVR 225
Query: 169 MTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 225
T+P F + + +AE V LH+P+QSGSD VL M R Y F ++D
Sbjct: 226 FTSPHPAEFTSDVIDAMAETHN---VCPQLHMPLQSGSDKVLKEMRRSYRTKRFMRILDE 282
Query: 226 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 284
+ E +P I TDII GFPGET+EDF QT++L+++ +F + Q+ PRPGTPAA M+ +
Sbjct: 283 VREKLPQASITTDIIVGFPGETEEDFQQTLDLVEKARFTSAYTFQYSPRPGTPAAAMEDQ 342
Query: 285 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG------IHLVGHTK-GYV 337
VP AVV+ R L + E + L E + + + A DG L G T+ G +
Sbjct: 343 VPKAVVQDRYERLVELQERISAELNAEMVGDVVEVLVQADDGRRSAQTHRLSGRTRDGRL 402
Query: 338 QVLVPSTGNM---------LGTSALVKITSVGRWSV 364
P +M +G + + TS GR SV
Sbjct: 403 VHFAPDAASMEETARAWDSIGATPMAHPTSPGRNSV 438
>gi|443623627|ref|ZP_21108124.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Streptomyces viridochromogenes Tue57]
gi|443342870|gb|ELS57015.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Streptomyces viridochromogenes Tue57]
Length = 505
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A++P + V GC+ Q RD +K V +V G I ++ ++E + ++
Sbjct: 81 KKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEDAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 141 AEALEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 259 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMENQIPKEVVQARYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|417887851|ref|ZP_12531970.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21195]
gi|341856880|gb|EGS97707.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21195]
Length = 448
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 193/392 (49%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+E+F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 178/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKEMVIEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + A+G KE
Sbjct: 200 IENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLAAEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + + +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L V +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNEVVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQLVNVKIHQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>gi|239991228|ref|ZP_04711892.1| hypothetical protein SrosN1_28246 [Streptomyces roseosporus NRRL
11379]
Length = 497
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 73 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARIQEEAQIEIA 132
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 133 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 192
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 193 AEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 249
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD++L AM R Y F +++ + +P I+TDII
Sbjct: 250 IAAMAETPNVMPQLHMPMQSGSDSILKAMRRSYRQERFLGIIEKVRAAMPDAAISTDIIV 309
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+++
Sbjct: 310 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLSAL 369
Query: 301 FEAFT 305
E +
Sbjct: 370 QEQIS 374
>gi|338813200|ref|ZP_08625334.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
gi|337274807|gb|EGO63310.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
Length = 430
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 190/384 (49%), Gaps = 38/384 (9%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG----HEVR 59
A ++ +VV GC Q + + GV +V G Q ++V++VEE +K + VR
Sbjct: 64 ASKQNPAAAVVVTGCYAQIEPGTIAGIPGVDVVVGTQDRQKIVDIVEEHVKTSLPINAVR 123
Query: 60 LL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
+ H + +P +++N+ L I GC CTYC + RG L S ++ES++
Sbjct: 124 SIMEADHFEDIPL----HIKQNRTRAFLKIQEGCRNYCTYCIIPYTRGPLRSRSLESILA 179
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-----T 170
R ++A G +E+ L+ GAYG+ + N+ L + + + L +G LR+G
Sbjct: 180 ECRKLVAAGFQEIVLTGIHLGAYGKGLEENVS-LTDVVRSILGVEGLARLRLGSLESLEA 238
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+ P I L++ + RH LH+P+QSGSD +L MNR YT + ++ + V
Sbjct: 239 DQPLIDLMLQD-ERLCRH------LHLPLQSGSDEILRRMNRHYTCEQYAQLIRQIQRQV 291
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 289
P + I+TD+I GFPGET+E F +T+ I + F +VHI + R GTPAA +V A
Sbjct: 292 PDIAISTDVIIGFPGETEELFRETLAFITQMPFAKVHIFPYSRRKGTPAANFTGQVSEAE 351
Query: 290 VKKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 344
K R L E ++G +V +W E DGI L G T Y++V
Sbjct: 352 KKCRFLALQEASEQIAIEFRQTFIGQHEKV--LW--EGCTDGI-LEGLTGNYIRVYADGH 406
Query: 345 GNMLGTSALVKITSVGRWSVFGEV 368
+M G V +T + ++G++
Sbjct: 407 SSMPGRVDKVCLTRTFQDGIWGQL 430
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKAG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETISLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|359411010|ref|ZP_09203475.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
gi|357169894|gb|EHI98068.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
Length = 459
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 188/383 (49%), Gaps = 24/383 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+I++ + K ++A GC Q + D + ++EGV +V G + +V V + H+ +
Sbjct: 84 IISRARRRNKEAIIAAVGCYSQVAPDEVSKIEGVDVVLGTRNKGDIVYYVNKAKDEHKPQ 143
Query: 60 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
L L K+ L++ + + +K L I GC C YC + RG S + ++
Sbjct: 144 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPDKVL 202
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ DG +RIG P
Sbjct: 203 TEIKKLNEHGFKEIILSGIHTASYGVDLDGNVSLI--TLLEEIEKLDGIERVRIGSIEPS 260
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + + E + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 261 FFTDEVIEKIKNMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDA 318
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGETDE+FN+T +K K + HI +F PR GT AA M +V V ++
Sbjct: 319 SITTDVIVGFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKAADMSNQVDGNVKEQ 378
Query: 293 RSRELTSVFEA----FTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQV-LVPSTGN 346
RS+ L + E F+ L GR + I E++ G+T+ YV+V + N
Sbjct: 379 RSKALIELNEKNEGDFSKSLV--GRELDVLIEQEVSNKPGVFEGYTRNYVKVEIFIGNEN 436
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
M+G KI V G+ I
Sbjct: 437 MIGKLVPCKIVEACGNYVVGKKI 459
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E +F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETISLYREVEFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNELAVEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + ++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKALIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
erythraeum IMS101]
gi|123057124|sp|Q119H9.1|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
IMS101]
Length = 451
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 30/383 (7%)
Query: 7 KCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
K K L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G++V
Sbjct: 72 KHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQVVAT 129
Query: 62 HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ D+ K RR+ K + I GC CTYC RG S T E++ + +
Sbjct: 130 EPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEMEEL 188
Query: 121 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNP 172
G +E+ L ++ AYGRD+ G N + + V ++P G +R ++P
Sbjct: 189 GRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFATSHP 246
Query: 173 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
+ E L + AE+ P V H+P QSG + +L AM R YT +R ++D + EL+P
Sbjct: 247 RYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRELMP 303
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA + VK
Sbjct: 304 DASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLGEEVK 363
Query: 292 ----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTG 345
+R L V A M GR+E + + ++ + ++G T+G +
Sbjct: 364 SDRLQRLNHLVGVKAADRSQRYM-GRIEEVLVEDMNPKNAAQVMGRTRGNRLTFFEGDIA 422
Query: 346 NMLGTSALVKITSVGRWSVFGEV 368
+ G VKIT V +S+ GEV
Sbjct: 423 QLKGKLVKVKITEVRPFSLTGEV 445
>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 437
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 177/387 (45%), Gaps = 35/387 (9%)
Query: 5 IAKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------V 48
I K K L+ + GC+ Q G ++ + V VQ++ R+V V
Sbjct: 65 IKKVKEHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPV 124
Query: 49 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 108
V+ L H V DLP R +PI GC CTYC + RG S
Sbjct: 125 VDVALDAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSR 175
Query: 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRI 167
T E +V VR ADG +EV L ++ +YG+D G + LL + A +G +R
Sbjct: 176 TPEEVVAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRF 232
Query: 168 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
++P I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R +
Sbjct: 233 MTSHPKDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVR 290
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 286
E +PG + TD+I GFPGET+EDF +T++ ++E ++ + + R GTPAA M +VP
Sbjct: 291 EALPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVP 350
Query: 287 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA---DGIHLVGHTKGYVQVLVPS 343
V R L +V + + R + + A D G T+ VL P
Sbjct: 351 DEVKHARLERLMAVQNEISRAINEGLRSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPH 410
Query: 344 TGNMLGTSALVKITSVGRWSVFGEVIK 370
+G VKIT W + GEV++
Sbjct: 411 GAERVGDFVQVKITQPQTWVLKGEVVR 437
>gi|288572815|ref|ZP_06391172.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568556|gb|EFC90113.1| RNA modification enzyme, MiaB family [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 442
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 187/376 (49%), Gaps = 24/376 (6%)
Query: 12 KKPLV-VAGCVPQG-SRDL-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
K P+V + GC+ Q RD+ K + I G + I + + + + G V LL
Sbjct: 71 KSPIVCLVGCMAQNVGRDMMKRFPWIRMIAGPRSIGFIPDGLIRAVSGERVDLLDADARE 130
Query: 68 ALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
DL P R N + + I GC CTYC + RG S E ++ +R ++ DG
Sbjct: 131 FNDLDVVPIKRDNPWKAYVTIAHGCDYFCTYCIVPYVRGRFMSRDSEEILEEIRALVDDG 190
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
V+E+ L ++ YG D + L VAE DG ++R + P + + ++
Sbjct: 191 VREISLLGQNVDTYGADFDRSYRFADLLRDVAET--DGVDLVRFMTSYPKDLTADV--VS 246
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ +P + +++P+QSGSD +L +MNR Y+++++ V + E +P + + +D+I GF
Sbjct: 247 VMAEYPKICPGINLPIQSGSDRILKSMNRHYSIAEYTETVRIIREGLPEVGLTSDLIVGF 306
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 302
PGET+EDF ++ +++++F VH + + PR GTPAA+M+ ++P +R E+ +
Sbjct: 307 PGETEEDFMASMEAVRQFRFDLVHTAAYSPRAGTPAAKMEDQLPDEEKFRRLSEINRLQS 366
Query: 303 AFTPYLGME------GRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVK 355
+ + ME GR RI I A G LV G T V+ P + G A VK
Sbjct: 367 S----IAMEINEATVGRRYRILIDGPAPKGDGLVQGRTMTDKVVICPGEASWAGRFADVK 422
Query: 356 ITSVGRWSVFGEVIKI 371
I W + GE+ ++
Sbjct: 423 IVRAENWCLHGEISEV 438
>gi|153813388|ref|ZP_01966056.1| hypothetical protein RUMOBE_03807 [Ruminococcus obeum ATCC 29174]
gi|149830565|gb|EDM85656.1| putative tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus
obeum ATCC 29174]
Length = 321
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 152/304 (50%), Gaps = 7/304 (2%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP R F + I GC C+YC + RG S E++V V+ ++ADGV EV
Sbjct: 21 DLPTERNYTFKSGVNIMFGCNNFCSYCIVPYVRGRERSREPEAIVKEVKRLVADGVSEVM 80
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
L ++ +YG+ + P+ ++ L +G +R ++P + + L E +
Sbjct: 81 LLGQNVNSYGKTL--EHPVTFAQLLEMLEDVEGLKRIRFMTSHPKDLSDELIETMAKSKK 138
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
C + LH+P+QSGS +L AMNR Y + +VD + +P + + TDII GFPGET+
Sbjct: 139 ICHH--LHLPLQSGSSRILKAMNRRYDKEKYLNLVDKIRTAIPDISLTTDIIVGFPGETE 196
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFTP 306
EDF +T++++ + + + R GTPAA M+++P V K+R L ++ E
Sbjct: 197 EDFEETLDVVSKCGYDTAFTFLYSRRSGTPAAEMEQIPQDVAKERFNRLLALVQQEGRIR 256
Query: 307 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 366
EG V+ + + E + + G T+ + V P T ++LG V + + G
Sbjct: 257 SSRFEGSVQEVLVEEESREKGIFTGRTEYNLLVHFPGTADLLGKYVKVSLDECHGFYYMG 316
Query: 367 EVIK 370
+++
Sbjct: 317 SLVE 320
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V KKR + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKKRLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|357410789|ref|YP_004922525.1| MiaB family RNA modification protein [Streptomyces flavogriseus
ATCC 33331]
gi|320008158|gb|ADW03008.1| RNA modification enzyme, MiaB family [Streptomyces flavogriseus
ATCC 33331]
Length = 506
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD ++ V +V G I ++ ++E E ++
Sbjct: 82 KTKRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 141
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 142 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 201
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 202 AEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGLERVRFTSPHPRDFTDDV-- 258
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD +L AM R Y F +++ + +P I+TDII
Sbjct: 259 IAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGIIEKVRAAMPDAAISTDIIV 318
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M+ ++P VV++R L+++
Sbjct: 319 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAAEMEGQIPKEVVQERYMRLSAL 378
Query: 301 FEAFT 305
E +
Sbjct: 379 QEQIS 383
>gi|302542068|ref|ZP_07294410.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
hygroscopicus ATCC 53653]
gi|302459686|gb|EFL22779.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
himastatinicus ATCC 53653]
Length = 496
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 156/304 (51%), Gaps = 12/304 (3%)
Query: 11 AKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
A++P + V GC+ Q RD +K+ V +V G I + ++E E ++ +
Sbjct: 74 ARRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGSLPVLLERARVQEEAQVEIAE 133
Query: 65 KLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L A LP R + + + I+VGC CT+C RG ++ V ++A
Sbjct: 134 SLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEALVA 193
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+GV E+ L ++ AYG DIG + + A +G +R +P + + I
Sbjct: 194 EGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPRDFTDDV--I 250
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A + V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII G
Sbjct: 251 AAMAETENVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAMPDAAISTDIIVG 310
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGETDEDF QT+++++E +F Q Q+ RPGTPAA M ++P AVV++R L ++
Sbjct: 311 FPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQLPKAVVQERYERLVALQ 370
Query: 302 EAFT 305
E +
Sbjct: 371 EEIS 374
>gi|363899229|ref|ZP_09325739.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. ACB1]
gi|395209381|ref|ZP_10398475.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. ACB8]
gi|361959066|gb|EHL12362.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. ACB1]
gi|394705012|gb|EJF12541.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. ACB8]
Length = 476
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 9/304 (2%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LP R+ F + I+ GC CTYC + RG S +V ++ DGVKE+
Sbjct: 178 NLPSKRKYPFRASVNISFGCNNFCTYCIVPYVRGREKSRDSREIVKECEALVRDGVKEIM 237
Query: 130 LSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ +YG R+ ++ P LL A VA++P G +R NP E L + +
Sbjct: 238 LLGQNVNSYGLDREEELSFPELLRA-VAKIP--GLRRIRFMTPNPKDFSEELLSVIQEYE 294
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ C + +H+P+QSGS +L MNR YT + +++ + E +P + + TDII GFPGET
Sbjct: 295 NIC--NHIHLPLQSGSTNILKRMNRHYTKESYLSLLRKIKERLPELGLTTDIIVGFPGET 352
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-SRELTSVFEAFTP 306
+EDF T+++++E +F Q+ R GTPAA+ V +V +R R L +V E+
Sbjct: 353 EEDFQDTLDVVREAQFDSAFTFQYSKRSGTPAAKWDAVDEKIVSERFQRLLDTVRESSKE 412
Query: 307 YLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
G G+V + + E + L G + + V +LG VK+ + +
Sbjct: 413 REGKYLGKVMEVLVEERNTENNMLTGRLENNILVHFEGGERLLGEIVPVKLEKSMGFYYY 472
Query: 366 GEVI 369
G V+
Sbjct: 473 GSVV 476
>gi|374287315|ref|YP_005034400.1| hypothetical protein BMS_0517 [Bacteriovorax marinus SJ]
gi|301165856|emb|CBW25429.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 433
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 166/375 (44%), Gaps = 23/375 (6%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-----ETLKGHEVRL 60
A S + +VVAGC Q +E +I +Q +D V+ E E L +
Sbjct: 72 AHKSSPEGKIVVAGCYAQ-------MEPETIANMQGVDLVLGTSEKYKVFEYLNEEDTTA 124
Query: 61 LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
+H K + L I GC C++C ARG + ++ + +
Sbjct: 125 IHVDKTTDFYGAATTTADSHTRAFLKIQDGCNYVCSFCIIPFARGRSKAISINGALENAK 184
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
+I DG KE+ L+ + G Y G L ++ A+ L +G LR+ P I +
Sbjct: 185 KLIEDGFKEIVLTGVNIGEYETSSGEKLTDMVKAL---LDLEGLERLRLSSVEPNTITDE 241
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E+ + P H+P+QSG D +L M R+YT++D++ V++ +I P I D
Sbjct: 242 LLEVFK--SSPKFKDHFHIPLQSGDDEILKNMRRKYTVADYKKVINKIITAFPNAGIGAD 299
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
IICGFPGET E F T NL+KE H+ + R GT A RM + SA K+R + L
Sbjct: 300 IICGFPGETKEQFENTYNLVKELPITHFHVFPYSKRKGTTAGRMDNHIHSATKKERVKSL 359
Query: 298 TSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+ EA + G + DG++ G+T YV+V V + + V
Sbjct: 360 LHLGEAKLALFSEDQVGSQSEVLFERRTKDGLY-TGYTTNYVKVYVETELELKNQIRSVY 418
Query: 356 ITSVGRWSVFGEVIK 370
+ VF E+I+
Sbjct: 419 LKEYKDGKVFAELIQ 433
>gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
Length = 442
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 178/376 (47%), Gaps = 37/376 (9%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPK 73
V GCV +G+ +K V +V G Q + R+ E++ + K P +D+
Sbjct: 78 VGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAA---------KAKPQVDISF 128
Query: 74 VRRNKFVEILPINV-----------GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
KF + P V GC C+YC + RG S E ++ V +
Sbjct: 129 PEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLVEVAGLAE 188
Query: 123 DGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
GVKE+ L ++ AY +G + +LL VAE+P G +R ++P
Sbjct: 189 QGVKEITLLGQNVNAYLGKMGDTSEMADFALLLE-YVAEIP--GIERIRYTTSHPNEFTP 245
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L I R P + S LH+PVQ GSD +L AM R YT ++++ + L + P + +++
Sbjct: 246 RL--IEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRPDLAMSS 303
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V +R +E
Sbjct: 304 DFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVKLRRLQE 363
Query: 297 LTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
L +V + + E G V+R+ I ++ DG L+G T V P ++G
Sbjct: 364 LQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNRVVNFPGNARLIGQMVD 423
Query: 354 VKITSVGRWSVFGEVI 369
VKIT +++ GEV+
Sbjct: 424 VKITEAKAYTLRGEVL 439
>gi|344995956|ref|YP_004798299.1| MiaB family RNA modification protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964175|gb|AEM73322.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 434
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 194/383 (50%), Gaps = 29/383 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S + +VV GC PQ ++++++E V I+ G + R+V+ V + L+ +
Sbjct: 63 AKKLSPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQRIVDYVRQYLED-------K 115
Query: 64 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 111
KK+ A+D + +R F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKIVAID-GEYKREAFEELKISEFNEHSRAFIKIEEGCDQFCSYCIIPYARGAVRSRGLK 174
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171
S+ VR ++ G KE ++ + AYG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVRRLVQKGYKEFVITGINISAYGKDLDGKVT-LIDVIERVNEIEGVKRIRLSSLE 233
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P + + I +L + LH+ +QSGSD +L MNR YT + ++ +VD + E
Sbjct: 234 PVIMNDEF--IERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWE 291
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 290
+ TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ GT A M +V S
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVDSKEK 351
Query: 291 KKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
++RS+ + V A+ + G + I + + + G++ Y++ LV + ++
Sbjct: 352 ERRSKIMKEVAANLAYQFHKKFVGNWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIV 411
Query: 349 -GTSALVKITSVGRWSVFGEVIK 370
G VKIT V GE+I+
Sbjct: 412 PGEIYKVKITQAYEQYVKGEIIQ 434
>gi|169333944|ref|ZP_02861137.1| hypothetical protein ANASTE_00330 [Anaerofustis stercorihominis DSM
17244]
gi|169259509|gb|EDS73475.1| tRNA methylthiotransferase YqeV [Anaerofustis stercorihominis DSM
17244]
Length = 408
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 182/364 (50%), Gaps = 19/364 (5%)
Query: 16 VVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPK 73
V+ GC + + + K+++ IV G + +++++ + E K + ++ + ++ + + K
Sbjct: 54 VLTGCFAESNFEEAKKVDSADIVCGTHKREKIIDYINE-FKAKQNKVYNLEE-DSREFDK 111
Query: 74 ----VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K + + GC CTYC +ARG L + +VE ++ ++ + G +EV
Sbjct: 112 AGITTYDGKSRAFIKVQDGCNMFCTYCIIPYARGILKNASVEKVLSQIDALSKKGYREVV 171
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRH 188
++ +Y D G NL LL I E D +R+G P + + LK ++E L+
Sbjct: 172 ITGIHVASYKADTGENLIDLLELIDKENKID---RIRLGSLEPKLLTDTFLKRLSE-LKS 227
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
C + H+ +QSG D L MNR+YT ++ +V + I TDII GFP ETD
Sbjct: 228 FCPH--FHISLQSGCDKTLKEMNRKYTTKEYMEIVKRVRTYFDNPGITTDIIVGFPNETD 285
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPY 307
EDF T + + F VHI + P+ GTPA+ M+ ++P V KR++EL V E
Sbjct: 286 EDFEVTKDFTDKVGFSYVHIFPYSPKHGTPASEMENQIPKEVKTKRAKELKDVMENKRED 345
Query: 308 L--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
M G+ E++ I + D I+ G+++ Y+ V V S ++ VKIT + +
Sbjct: 346 FLNNMIGKKEKVLIEKKLEDNIY-EGYSENYIYVEVKSDKDIFNQIVNVKITDKTQTHLR 404
Query: 366 GEVI 369
GE+I
Sbjct: 405 GEII 408
>gi|119026050|ref|YP_909895.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Bifidobacterium adolescentis ATCC 15703]
gi|229890431|sp|A1A280.1|MIAB_BIFAA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|118765634|dbj|BAF39813.1| hypothetical protein BAD_1032 [Bifidobacterium adolescentis ATCC
15703]
Length = 480
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 14/315 (4%)
Query: 15 LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEET-LKGH-EVRLLHRKKLPAL 69
+ V GC+ Q R+ K+ V ++ G + I + +++++ ++GH +V++
Sbjct: 103 IAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQARIEGHAQVKVQEELNYFPS 162
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R +K + I+VGC CT+C RG ++ +R + +G KEV
Sbjct: 163 QLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVT 222
Query: 130 LSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ ++G IG LL A E+ DG +R +P + + IA +
Sbjct: 223 LLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--DGLERVRFTSPHPAAFTDDV--IAAMAE 277
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPGET
Sbjct: 278 TPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGET 337
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 306
+EDF +T+ +++E +F + PRPGTPAA M++VP VV+ R L ++ E T
Sbjct: 338 EEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPHDVVQDRFERLVALQERITEE 397
Query: 307 -YLGMEGRVERIWIT 320
EGR + +T
Sbjct: 398 NLKTFEGRDVEVMVT 412
>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 509
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|290956967|ref|YP_003488149.1| radical SAM protein [Streptomyces scabiei 87.22]
gi|260646493|emb|CBG69590.1| putative Radical SAM protein [Streptomyces scabiei 87.22]
Length = 483
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 11/309 (3%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+A K+A+ + +A GC+ Q RD +K+ V +V G I ++ ++E E +
Sbjct: 55 LAPMKTARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQDEAQ 114
Query: 60 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
+ + L A LP R + + + I+VGC CT+C RG ++ +
Sbjct: 115 VEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEI 174
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
++A+GV E+ L ++ AYG DIG + + A +G +R +P +
Sbjct: 175 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTD 233
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I T
Sbjct: 234 DV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRASIPHAAITT 291
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R
Sbjct: 292 DIIVGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMENQIPKQVVQARYER 351
Query: 297 LTSVFEAFT 305
L ++ E +
Sbjct: 352 LVALQEEIS 360
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R ++A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLVANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
Length = 452
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 186/382 (48%), Gaps = 26/382 (6%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 72 KHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIATEP 131
Query: 64 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ D+ K RR+ V + I GC C+YC RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMELLAK 190
Query: 123 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 174
G KEV L ++ AYGRD+ G + L + + V ++P G LR ++P +
Sbjct: 191 QGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSHPRY 248
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 249 FTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMPDAS 306
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-R 293
I+ D I GFP ET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK R
Sbjct: 307 ISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVKSDR 366
Query: 294 SRELTSVFEAFTPYLGME--GRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---M 347
+ L + GR+E + + + D ++G T+G L GN +
Sbjct: 367 LQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRTQG--NRLTFCKGNIDEL 424
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
G V+IT V +S+ GE I
Sbjct: 425 KGQLIKVEITEVRAFSLTGEAI 446
>gi|433654786|ref|YP_007298494.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292975|gb|AGB18797.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 452
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 157/297 (52%), Gaps = 15/297 (5%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ L V+IV G + VV++VE+ E + KK
Sbjct: 92 IAVVGCYSQVASNEVLNLPEVNIVLGTKNKGEVVKLVEKVSGDKEKINAVENIFDNKKFE 151
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L + + L I GC CTYC +ARG + S ++++ V+ + +G KE
Sbjct: 152 ELKIS-AQEGHTRAYLKIQDGCNQFCTYCIIPYARGPVRSRRPDNILDEVKRLRDNGYKE 210
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
V L+ +YG+D+ +NL L+ I DG +R+ P F+ E I EV
Sbjct: 211 VILTGIHVASYGKDLENINL---LDIIKMIHEVDGIERIRMSSIEPTFLTEDF--IKEVA 265
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P HV +QSGSD+ L M R+YT S+++ ++D + E + + I TDI+ GFPGE
Sbjct: 266 SLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYKEIIDRIREHIKDVAITTDIMVGFPGE 325
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFE 302
TDE+FN+T N +K +F ++H+ ++ RPGT AA +V ++V ++RS++L + E
Sbjct: 326 TDEEFNETFNFVKAIEFSKMHVFKYSRRPGTKAANYPDQVKNSVKEERSQKLIKLSE 382
>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 185/370 (50%), Gaps = 27/370 (7%)
Query: 6 AKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
+K K+ +VV GC Q S ++K +EGV +V G + +++V+++EE H
Sbjct: 65 SKKKNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH------- 117
Query: 64 KKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 112
KK+ + DL VR N+ + + GC CTYC ARG + S ++
Sbjct: 118 KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSREIDD 177
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 172
V R + +G KE+ L+ G++G D+G I L +AE+ DG +R+ P
Sbjct: 178 AVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSSVEP 235
Query: 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
I + E + L+ + H+ +QSGS+ +L AMNR YT ++ + + + +P
Sbjct: 236 IIITDEFMERS--LKTEKLCDHFHLSLQSGSNNILKAMNRRYTREEYIEKANIIRKYMPY 293
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 291
+ TDII GFPGE++EDF +++++++ F ++H+ ++ R T AA MK ++ + K
Sbjct: 294 AGLTTDIIVGFPGESEEDFEDSMSIVRKVGFSRIHVFKYSKRKNTKAAAMKNQIDGNIKK 353
Query: 292 KRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
+RS +L ++ E + E ++ + + E D G+T Y++V S ++
Sbjct: 354 ERSEKLIALGEEYQKIFERENMKIPKSVLFEEEHDK-EYYGYTTNYIRVKANSDIDIKNK 412
Query: 351 SALVKITSVG 360
VKI G
Sbjct: 413 IKNVKILDTG 422
>gi|441178473|ref|ZP_20970033.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
rimosus subsp. rimosus ATCC 10970]
gi|440614511|gb|ELQ77777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
rimosus subsp. rimosus ATCC 10970]
Length = 487
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 63 KKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 122
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 123 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 182
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 183 VDEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV- 240
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TDII
Sbjct: 241 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPDAAISTDII 299
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M+ ++P VV+ R L +
Sbjct: 300 VGFPGETEEDFEQTLHTVRESRFAQAFTFQYSKRPGTPAAEMEGQIPKEVVQARYERLVA 359
Query: 300 VFEAFT 305
+ E +
Sbjct: 360 LQEEIS 365
>gi|442804335|ref|YP_007372484.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Clostridium stercorarium subsp. stercorarium DSM 8532]
gi|442740185|gb|AGC67874.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Clostridium stercorarium subsp. stercorarium DSM 8532]
Length = 480
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 17/307 (5%)
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P R +K + I GC C+YC + RG S E ++ V+ + G KE+ L
Sbjct: 176 PISRSDKVKAYVSIMQGCNNFCSYCIVPYVRGRERSRKKEDIMDEVKRLAEAGYKEITLL 235
Query: 132 SEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
++ +YG D+G +L LN I DG +R ++P + + L I +
Sbjct: 236 GQNVNSYGNDLGKKDAFADLLYSLNEI------DGIERIRFTTSHPKDLSDSL--ITAMK 287
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
P V LH+P Q+GS +L AMNR+YT + +VD + VPG+ TDII GFPGE
Sbjct: 288 ELPKVCEHLHLPFQAGSTKILRAMNRKYTKEQYLELVDRVRAAVPGISFTTDIIVGFPGE 347
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
T+EDF T++++K+ +F Q ++ + R GT AA + +VP V K+R + L + A
Sbjct: 348 TEEDFQDTLDVVKKVRFDQAYMFMYSKRKGTKAAEFENQVPEDVKKERFQRLVELQNAIV 407
Query: 306 PYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ EGR + + I+ + + G T+ Y V P++ ++ G VKI +
Sbjct: 408 AEINKTYEGRTVEVLVEGISRNNDKMYTGRTRNYKLVNFPASEDLTGKLVRVKIVRAWPF 467
Query: 363 SVFGEVI 369
+ G VI
Sbjct: 468 WLEGAVI 474
>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
Length = 509
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
[Streptomyces clavuligerus ATCC 27064]
gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
[Streptomyces clavuligerus ATCC 27064]
Length = 506
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 9/297 (3%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-- 69
+ V GC+ Q RD + V +V G I ++ ++E E ++ + L A
Sbjct: 90 IAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIAESLEAFPS 149
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R + + + I+VGC CT+C RG ++ + ++A+GV E+
Sbjct: 150 TLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEALVAEGVSEIT 209
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG DIG + + A +G +R +P + + IA + P
Sbjct: 210 LLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTDDV--IAAMAETP 266
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V LH+P+QSGSDAVL AM R Y F ++D + E +P I+TDII GFPGET+E
Sbjct: 267 NVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIDKVREAIPHAAISTDIIVGFPGETEE 326
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
DF QT++ ++E +F Q+ RPGTPAA M+ ++P VV+ R L + E +
Sbjct: 327 DFEQTLHTVREARFANAFTFQYSKRPGTPAATMEGQLPKEVVQARYERLVVLQEEIS 383
>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
Length = 448
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 189/380 (49%), Gaps = 36/380 (9%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + V +V G Q +R+ +++++ G+++ + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQVFDGNQLVATEPIHI-VEDI 138
Query: 72 PKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR+ + + I GC C+YC + RG S T E++ + + G KE+ L
Sbjct: 139 TKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGLEQSRTPEAIRAEMEELGRLGYKEITL 198
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL--- 179
++ AYGRD+ G + L + + V+ +P G LR ++P + +E L
Sbjct: 199 LGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVSNVP--GIERLRFATSHPRYFVERLIRA 256
Query: 180 -KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
E+ EV H H+P QSG + +L AM R YT +R +++T+ + +P I+ D
Sbjct: 257 CHELPEVCEH------FHIPFQSGDNDILKAMARGYTHQKYRRIINTIRDYMPDASISAD 310
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRS 294
I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA + S VK +R
Sbjct: 311 AIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLSEEVKCDRLQRL 370
Query: 295 RELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GT 350
L +V E YL GR+E + + + D ++G TKG N L G
Sbjct: 371 NHLVAVKAAERSQRYL---GRIEEVLVEDQNPKDNTQVMGRTKGNRLTFFSGDINHLKGE 427
Query: 351 SALVKITSVGRWSVFGEVIK 370
LVKIT +S+ GE ++
Sbjct: 428 LVLVKITEARAFSLTGERVE 447
>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
Length = 509
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKAG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
E43]
gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 434
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 194/381 (50%), Gaps = 22/381 (5%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLK 54
+I+K + ++A GC Q ++ ++EGV +V G + +V V E+ ++
Sbjct: 59 IISKARRTNSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQ 118
Query: 55 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
+L K+ L++ + + +K L I GC CT+C +ARG S E ++
Sbjct: 119 VSVNEVLKNKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVI 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
V+ + G KEV LS T +YG D+G + ++ +++ ++ DG +RIG P
Sbjct: 178 EEVKKLAEHGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPA 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + + + ++ C + H+ +QSGSDA L MNR YT ++ V TL + + +
Sbjct: 236 FFTDEVINKIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGET+E+FN+T +K+ K +VH+ ++ PR GT AA M ++ + K
Sbjct: 294 SITTDLIVGFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDK 353
Query: 293 RSRELTSVF-EAFTPYL-GMEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVP-STGNM 347
RS+ L+ + E ++ + GR + I ++ GI G+TK YV+ + ++ M
Sbjct: 354 RSKILSELNKENEVDFVKNLVGREMGVLIERECSNKPGI-FEGYTKNYVKAEISDASKEM 412
Query: 348 LGTSALVKITSVGRWSVFGEV 368
+G I + + G++
Sbjct: 413 IGKIMDCNIETYDENYIVGKI 433
>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus G9842]
gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
Length = 509
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|408528866|emb|CCK27040.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces davawensis JCM 4913]
Length = 505
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 201 VGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGSIEGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 259 -IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRSERYLGIIEKVRAAIPHAAITTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++P VV+ R L +
Sbjct: 318 VGFPGETEEDFEQTMHVVREARFTQAFTFQYSKRPGTPAATMDDQIPKEVVQARYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>gi|379795935|ref|YP_005325933.1| hypothetical protein SAMSHR1132_14160 [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872925|emb|CCE59264.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 448
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 41/393 (10%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + E+ +VL
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTD---EVIDVL 245
Query: 187 RHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
H V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPG
Sbjct: 246 EHSTKVVRHLHIPLQSGSDTVLKRMRRKYTMERFSERLTKLHKALPDLAVTSDVIVGFPG 305
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAF 304
ET+ +F +T + I ++KF ++H+ + PR GTPAARM ++ V +R +L
Sbjct: 306 ETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEVKNERVHKL------- 358
Query: 305 TPYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSA 352
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 ---ITLSNQLGKLYASKFDQDVLEVIPEEQGDIEGTLVGYADNYMKVQFEGDESLIGQIV 415
Query: 353 LVKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 416 KVKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 515
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 20/372 (5%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ LK + V ++ G I R+ ++ E E + + ++
Sbjct: 145 VCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPHILHEAYMSKEMVIEVWSKEGDVIE 204
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVR K + I GC CTYC + RG S E ++ VR + A+G KE+
Sbjct: 205 NLPKVRHGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAEGYKEIT 264
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ +L +R ++P +HL E+ + +
Sbjct: 265 LLGQNVNAYGKDFD-DITYRLGDLMDDLRKIDIPRIRFTTSHPRDFDDHLIEV--LAKGG 321
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+YT + +V+ + +P + TDII GFP ETDE
Sbjct: 322 NLVDHIHLPVQSGSSDMLKIMARKYTRESYLELVNKIRTAIPTASLTTDIIVGFPNETDE 381
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF-----EA 303
F +T++L +E F + R GTPAA+M+ VP V K+R + L + EA
Sbjct: 382 QFEETMSLYREVGFDMAFTYIYSAREGTPAAKMQDNVPMEVKKERLQRLNKLVNDMSAEA 441
Query: 304 FTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
PY +G+V ++ + E + L G+T+ V + +++G V+I W
Sbjct: 442 MKPY---KGQVVKVLVEGESKKNPDVLAGYTEKSKLVNFRAPRSVIGEIVEVRIKEAKTW 498
Query: 363 SVFGEVIKILNQ 374
S+ GE I ++ +
Sbjct: 499 SLDGEFIGVVKE 510
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|150015722|ref|YP_001307976.1| MiaB-like tRNA modifying protein [Clostridium beijerinckii NCIMB
8052]
gi|149902187|gb|ABR33020.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
8052]
Length = 432
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 192/383 (50%), Gaps = 24/383 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+I++ + + ++A GC Q ++ +++GV +V G + +V V + + +
Sbjct: 57 IISRARRRNENAIIAAVGCYSQVAPEEVSKIQGVDVVLGTRNKGDIVYYVNKAKDEQKPQ 116
Query: 60 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
L L K+ L++ + + +K L I GC C YC + RG S + ++
Sbjct: 117 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPQKVL 175
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ DG +RIG P
Sbjct: 176 DEIKNLSEHGFKEIILSGIHTASYGVDLDGNVTLI--TLLEEIEKLDGIERVRIGSIEPS 233
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + + E + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 234 FFTDEVIEKMKKMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDA 291
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGETDE+FN+T +K K + HI +F PR GT A+ M ++ V K
Sbjct: 292 SITTDVIVGFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKASDMPNQIDGNVKDK 351
Query: 293 RSR---ELTSVFEA-FTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPS-TGN 346
RS+ EL + E F+ L GR + + E++ G+T+ YV+V +P+ + +
Sbjct: 352 RSKALIELNAKNEGDFSKSLV--GRELDVLVEQEVSNKPGVFEGYTRNYVKVEIPNGSRD 409
Query: 347 MLGTSALVKITSVGRWSVFGEVI 369
M+G L KI + V G++I
Sbjct: 410 MIGKIILCKIMASDAEYVVGKII 432
>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
denitrificans BC]
gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
K601]
gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
denitrificans BC]
gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
K601]
Length = 449
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 179/366 (48%), Gaps = 19/366 (5%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD-L 71
V GCV +G +K V +V G Q + R+ E++ K H+ ++ + ++ D L
Sbjct: 78 VGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHKPQVDISFPEIEKFDHL 137
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P R + I GC C+YC + RG S E ++ V + GVKEV L
Sbjct: 138 PPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLVEVAGLADQGVKEVTLL 197
Query: 132 SEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
++ AY +G + +LL VAE+P G +R ++P L I
Sbjct: 198 GQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTSHPNEFTPRL--IEAYA 252
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R P + S LH+PVQ GSD +L AM R YT ++++ V L + PGM +++D I GFPGE
Sbjct: 253 RIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLKAIRPGMAMSSDFIVGFPGE 312
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
T+EDF + + LI + +F F PRPGTPAA + P V +R +EL +V
Sbjct: 313 TEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHDVKLRRLQELQAVINRNI 372
Query: 306 PYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ E G V+R+ + ++ D L+G T+ V P ++G V+IT +
Sbjct: 373 LEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVVNFPGRERLIGQMIDVRITEARTY 432
Query: 363 SVFGEV 368
++ GEV
Sbjct: 433 TLRGEV 438
>gi|402300028|ref|ZP_10819581.1| hypothetical protein BalcAV_13223 [Bacillus alcalophilus ATCC
27647]
gi|401724819|gb|EJS98148.1| hypothetical protein BalcAV_13223 [Bacillus alcalophilus ATCC
27647]
Length = 450
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 186/374 (49%), Gaps = 20/374 (5%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +E+ K + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGVGNIMKSRVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S + ++ + ++ G KE
Sbjct: 133 ELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVISQANQLVEAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ +L LL + +G +RI + + + ++ +
Sbjct: 192 IVLTGIHTGGYGEDLKDYSLARLLEDLEQ---IEGLKRIRISSIEASQLTDEVIDVID-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGS+ VL M R+YT+ F ++ L ++PG+ + +D+I GFPGE
Sbjct: 247 RSEKVVRHLHIPIQSGSNTVLKRMRRKYTMEFFAERIEKLKGVLPGLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+E+F +T + I ++KF ++H+ + R GTPAARM +V V +R +L + +
Sbjct: 307 TEEEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMDDQVDEEVKNERVHKLIQLSDQLA 366
Query: 306 PYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 360
EG V + E D L+G+T Y++V V M+G +K+T G
Sbjct: 367 KEYASHFEGDVLEMIPEEEDKDNPDSGVLIGYTDNYLKVKVNVPAEMIGKIIKIKLTKAG 426
Query: 361 RWSVFGEVIKILNQ 374
GE ++++++
Sbjct: 427 YPYSEGEFVRVMDE 440
>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
Length = 515
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 180/375 (48%), Gaps = 18/375 (4%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ LK V ++ G I R+ +++E E + + ++
Sbjct: 145 VCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQEAYMSKEMVIEVWSKEGDVIE 204
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ VR + A G +E+
Sbjct: 205 NLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYQEIT 264
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ E+ +R ++P +HL E+ + +
Sbjct: 265 LLGQNVNAYGKDFE-DMNYGLGDLMDEMRKIDIPRVRFTTSHPRDFDDHLIEV--LAKGG 321
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS VL M R+YT + +V + +P TDII G+P ET+E
Sbjct: 322 NLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPEATFTTDIIVGYPNETEE 381
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF-----EA 303
F +T++L +E F + + PR GTPAA+M VP V K+R + L +V EA
Sbjct: 382 QFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDNVPMEVKKERLQRLNAVVNELSAEA 441
Query: 304 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
Y G VE + E + L G+T+ V +G VK+T WS
Sbjct: 442 MKKYKGQ--TVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKTAIGKIVNVKVTDAKTWS 499
Query: 364 VFGEVIKILNQVDDK 378
+ GE+++ L+ V+ K
Sbjct: 500 LNGEMVEELDAVEVK 514
>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 451
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 15/293 (5%)
Query: 17 VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDL 71
V GC+ Q RD + V +V G + ++ ++++E + + + + + + A D+
Sbjct: 92 VTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVLAVWDQAERLAPDV 151
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P VR+++ +PI GC CTYC + RG S + ++ VR + +G KE+ L
Sbjct: 152 PTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVRQLGTEGFKEITLL 211
Query: 132 SEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRH 188
++ +YG+D ++ LL A+ T+ RI MT+ P + + K IA +
Sbjct: 212 GQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRDM-NAKVIAVIKHG 265
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
+ H+PVQSGSD VL MNR YT +R +V+ + +P I TDII GFPGETD
Sbjct: 266 QRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRSEIPHASITTDIIVGFPGETD 325
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 300
E F QT++ ++ +F + + PR GTPAA M +VP A+ K+R ++L +V
Sbjct: 326 ELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVPLAIKKQRLQQLMAV 378
>gi|145590038|ref|YP_001156635.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|229890594|sp|A4T007.1|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 448
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 15/311 (4%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP R+ + + I GC C+YC + RG S + ++ V + + GVKE+ L
Sbjct: 138 LPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTEVAGLASKGVKEIVL 197
Query: 131 SSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
++ AY +G I LL +AE+P G +R ++P + L ++
Sbjct: 198 LGQNVNAYLGKMGDAEEIADFALLIEYIAEIP--GVERIRFTTSHPKEFTQRLIDV--YA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ P + S LH+PVQ GSD++LSAM R YT ++++++ + + P + +++D I GFPGE
Sbjct: 254 KVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRKMRAVRPDLTLSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
TD DF + + +++E F F PRPGTPAA + P V KR + L ++ E +
Sbjct: 314 TDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDDTPYEVKLKRLQTLLALIEGQS 373
Query: 306 PYLG--MEGRVERIWITEIAADGIHLVGHTK-GYVQVLVPSTGN---MLGTSALVKITSV 359
+ M G+ ER+ I +A DG++L G + V P N ++G ++IT V
Sbjct: 374 NQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFSPPDQNIDGLIGEMVDIRITEV 433
Query: 360 GRWSVFGEVIK 370
+++ GE+++
Sbjct: 434 LNYTLRGELVE 444
>gi|163852619|ref|YP_001640662.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens PA1]
gi|229890613|sp|A9VYZ9.1|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
PA1]
Length = 446
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 176/369 (47%), Gaps = 21/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD- 70
+VVAGCV Q G L V +V G Q R+ +++ ++ E R++ + PA D
Sbjct: 80 IVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---RETRVVD-TEFPAEDK 135
Query: 71 ---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R L + GC C +C + RG S +V ++V R ++ GV+E
Sbjct: 136 FDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVDEARRLVEGGVRE 195
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ AY + P L ++ L G LR ++P + L IA
Sbjct: 196 ITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLRYTTSHPNDFADDL--IAAHA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+P V +LH+PVQSGSD +L AMNR +T +R +++ + P + +++D I GFPGE
Sbjct: 254 TNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARPDIALSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE--- 302
TD DF +T+ L+ + F ++ PR GTPAA R VP AV +R L + +
Sbjct: 314 TDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVKTERLAALQDLLDRQR 373
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
A+ G + I + + + G T V + + +GT V+IT G
Sbjct: 374 HAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPASTIGTVVPVRITRAGS 431
Query: 362 WSVFGEVIK 370
S+FGE ++
Sbjct: 432 NSLFGETLE 440
>gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
Length = 451
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 191/388 (49%), Gaps = 34/388 (8%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + A L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 72 KQEQADLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVGDGNQIVATEP 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ D+ K RR+ V +NV GC CTYC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMAELG 189
Query: 122 ADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPP 173
G KE+ L ++ AYGRD+ G + L + + V ++P +R ++P
Sbjct: 190 QQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVHDVP--SIERIRFATSHPR 247
Query: 174 FILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
+ E L KE+ +V H H+P QSG + +L AM R YT +R ++DT+ +
Sbjct: 248 YFTERLIRACKELPKVCEH------FHIPFQSGDNDILKAMARGYTQEKYRRIIDTIRDY 301
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289
+P I+ D I GFPGET+ F T+ L+++ +F Q++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPGTPAALWENQLSEE 361
Query: 290 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 344
VK +R L S+ A GR+E + + + D ++G T+G
Sbjct: 362 VKSDRLQRLNHLVSIKAAARSQRYF-GRIEEVLVEDQNPKDSSQVMGRTRGNRLTFFSGD 420
Query: 345 GNML-GTSALVKITSVGRWSVFGEVIKI 371
N L G VKIT V +S+ GE + +
Sbjct: 421 INQLKGQLVKVKITEVRAFSLTGEALTL 448
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKAG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKAG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 434
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 195/381 (51%), Gaps = 22/381 (5%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLK 54
+I+K + ++A GC Q ++ ++EGV +V G + +V V E+ ++
Sbjct: 59 IISKARRTNSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQ 118
Query: 55 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
+L K+ L++ + + +K L I GC CT+C +ARG S E ++
Sbjct: 119 VSVNEVLKNKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVI 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
V+ + G KEV LS T +YG D+G ++ ++ +++ ++ DG +RIG P
Sbjct: 178 EEVKKLAEHGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPA 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + + + ++ C + H+ +QSGSDA L MNR YT ++ V TL + + +
Sbjct: 236 FFTDEVINKIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I TD+I GFPGET+++FN+T +K+ K +VH+ ++ PR GT AA M ++ + K
Sbjct: 294 SITTDLIVGFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDK 353
Query: 293 RSRELTSVF-EAFTPYL-GMEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVP-STGNM 347
RS+ L+ + E ++ + GR + I ++ GI G+TK YV+ + ++ M
Sbjct: 354 RSKILSELNKENEVDFVKKLVGREMDVLIERECSNKPGI-FEGYTKNYVKAEISDASKEM 412
Query: 348 LGTSALVKITSVGRWSVFGEV 368
+G I + + G++
Sbjct: 413 IGKIMDCNIETYDENYIVGKI 433
>gi|373455512|ref|ZP_09547343.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
gi|371934774|gb|EHO62552.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
Length = 434
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 179/365 (49%), Gaps = 33/365 (9%)
Query: 15 LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLL----------H 62
+ VAGC Q + ++ E G IVGVQ +V+ VEE + + + L H
Sbjct: 70 IAVAGCYAQLAPEVFEKMGDVDVIVGVQNRSHIVDYVEEAMGRTDRKPLNETVDIMKVDH 129
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ + +VR FV++ GC CT+C +ARG L S + V +R + A
Sbjct: 130 FENMSVDVSGEVRTRAFVKV---QEGCDNYCTFCIIPYARGKLKSRLQKDAVDEIRKLAA 186
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G +EV L+ G YG+D+ G +L L+ +V ++P +R+G + E L
Sbjct: 187 QGYREVVLTGIHLGNYGKDLHDGTSLATLVAELV-KIP--NLLRIRLGSVESVELSEDLI 243
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
I + P V LH+P+QSGSDAVL MNR Y L F+ ++ L VPG+ + TD+I
Sbjct: 244 SIMQ--NEPKVCRHLHLPIQSGSDAVLKGMNRHYRLPQFKKLISELRAKVPGIALTTDLI 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 300
GFPGET+E+F +T+ +KE +F +H+ + R GTPAA P+ V + +E
Sbjct: 302 VGFPGETEENFQETLETLKEIRFSGIHVFPYSRRTGTPAA---SYPNQVTNEVKKERVHR 358
Query: 301 FEAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
+ + ++ GRV + EI DG G + Y++V + + G V
Sbjct: 359 VQELEKEIALDYRKQFMGRVVHVLAEEI-KDGF-FEGLSDEYIRVSIRDSHIERGKMYPV 416
Query: 355 KITSV 359
+I ++
Sbjct: 417 RIDTI 421
>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
Length = 499
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 159/311 (51%), Gaps = 22/311 (7%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
+ A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 74 RKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 133
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 134 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDVLAEVEAL 193
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP---PFI 175
+A+GV E+ L ++ AYG DIG LL A + + R+ T+P F
Sbjct: 194 VAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERVRFTSPHPRDFT 248
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
+ ++ +AE P V LH+P+QSGSD VL AM R Y + +++ + +P I
Sbjct: 249 DDVIEAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAI 305
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 294
TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P VV+ R
Sbjct: 306 TTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMEDQIPKKVVQARY 365
Query: 295 RELTSVFEAFT 305
L ++ E +
Sbjct: 366 ERLVALQEEIS 376
>gi|326443848|ref|ZP_08218582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
clavuligerus ATCC 27064]
Length = 497
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 9/297 (3%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-- 69
+ V GC+ Q RD + V +V G I ++ ++E E ++ + L A
Sbjct: 81 IAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIAESLEAFPS 140
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R + + + I+VGC CT+C RG ++ + ++A+GV E+
Sbjct: 141 TLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEALVAEGVSEIT 200
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG DIG + + A +G +R +P + + IA + P
Sbjct: 201 LLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTDDV--IAAMAETP 257
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V LH+P+QSGSDAVL AM R Y F ++D + E +P I+TDII GFPGET+E
Sbjct: 258 NVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIDKVREAIPHAAISTDIIVGFPGETEE 317
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
DF QT++ ++E +F Q+ RPGTPAA M+ ++P VV+ R L + E +
Sbjct: 318 DFEQTLHTVREARFANAFTFQYSKRPGTPAATMEGQLPKEVVQARYERLVVLQEEIS 374
>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
gi|156868179|gb|EDO61551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium leptum DSM
753]
Length = 459
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 164/341 (48%), Gaps = 13/341 (3%)
Query: 36 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD--LPKVRRNKFVEILPINVGCLGAC 93
+ G + ++V ETL G + R+ R +D +P R +F LP+ GC C
Sbjct: 125 VFGTHSLSSFPQLVYETLTGAK-RVFQRGGEDTIDENIPVRRDGRFKAWLPVMYGCDNFC 183
Query: 94 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLN 151
+YC + RG S E+++ R +I G K++ L ++ +YG+++ VN LL
Sbjct: 184 SYCVVPYVRGRERSREPEAVLKEARQLIEGGYKDITLLGQNVNSYGKNLPEPVNFAKLLK 243
Query: 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 211
I +G LR ++P + L ++ H + LH+P QSG++ VL MN
Sbjct: 244 EISDM---EGDYWLRFMTSHPKDCTKELIDVMASSGH--IAKHLHLPFQSGNNRVLKEMN 298
Query: 212 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 271
R YT + ++ E +PG+ I +D+I GFPGET E+F T++LI+E F ++ F
Sbjct: 299 RRYTREQYLEIIRYAREKMPGLSITSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIF 358
Query: 272 YPRPGTPAARMKKVPSAVVKKR-SRELTSVFEAFTPY--LGMEGRVERIWITEIAADGIH 328
PR GTPAA M S K R EL V E + M G+ R + E A+
Sbjct: 359 SPRKGTPAAGMSDPVSHKEKTRWFAELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGV 418
Query: 329 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
L T+ V V +P M+G+ + +T G W + G I
Sbjct: 419 LNARTEENVTVEIPGGPEMIGSFRNILVTDAGNWVLKGNCI 459
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 179/367 (48%), Gaps = 26/367 (7%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q R LK+ + + ++ G I R+ ++++E L G E V + ++
Sbjct: 151 VCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMIVEVWSKEGDVIE 210
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVR+ K + I GC CTYC RG S E ++ VR ++A G +EV
Sbjct: 211 NLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEVRHLVAQGYQEVT 270
Query: 130 LSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
L ++ AYG+D I L L+N I ++P +R ++P + L E+ +
Sbjct: 271 LLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPRDFDDRLIEV--L 323
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ + +H+PVQSGS +L MNR+Y+ D+ +V + + +P + TDII GFP
Sbjct: 324 AQGGNLLDHIHLPVQSGSTEILKKMNRKYSREDYLELVRKIRKAIPNATLTTDIIVGFPN 383
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRSRELTSVF--- 301
ET+E F +T+ L++E F + + PR GTPAAR VP V K+R L +
Sbjct: 384 ETEEQFEETMTLMEEVGFEAAYTYIYSPREGTPAARKTDDVPEDVKKQRLYRLNELVNKQ 443
Query: 302 --EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
E+ Y G +V + E D L G+T+ V + +G V+IT
Sbjct: 444 SAESMKKYDGQTVKV--LVEGESKKDPDVLAGYTEKNKLVNFKGPKSSIGNIVEVEITEA 501
Query: 360 GRWSVFG 366
WS+ G
Sbjct: 502 KTWSLNG 508
>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
Length = 509
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 184/369 (49%), Gaps = 22/369 (5%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + K V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKATVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIINEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ ++
Sbjct: 379 QFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYS--- 435
Query: 309 GME-GRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
ME + + I E+ DG L G+T+ V + +G VK+T
Sbjct: 436 -MEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKYAIGQLVKVKVTEAKT 494
Query: 362 WSVFGEVIK 370
WS+ GE+++
Sbjct: 495 WSLNGELVE 503
>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
Length = 454
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 193/384 (50%), Gaps = 26/384 (6%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E +G++V
Sbjct: 72 KHEKADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFEGNQVVATEA 131
Query: 64 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ D+ + RR+ K + + GC CTYC + RG S T E++ + +
Sbjct: 132 VHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVELGR 190
Query: 123 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 174
G KE+ L ++ AYGRD+ G +L + + V ++P G LR ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFATSHPRY 248
Query: 175 ILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ + +P
Sbjct: 249 FTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRKYMPDA 305
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-- 291
I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S VK
Sbjct: 306 SISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEEVKSD 365
Query: 292 --KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML 348
+R L ++ +A GR+E + + + + D ++G T+G N L
Sbjct: 366 RLQRLNHLVNI-KAAARSQRYFGRIEEVLVEDQNSKDPTQVMGRTRGNRLTFFTGDINEL 424
Query: 349 -GTSALVKITSVGRWSVFGEVIKI 371
G VKIT V +S+ GE I++
Sbjct: 425 KGQLVKVKITEVRAFSLTGEPIEV 448
>gi|302389750|ref|YP_003825571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
oceani DSM 16646]
gi|302200378|gb|ADL07948.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermosediminibacter
oceani DSM 16646]
Length = 439
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 156/307 (50%), Gaps = 11/307 (3%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
DLP R +K + I GC CTYC + RG S E +V V + G KE+
Sbjct: 138 DLPVEREDKIKAWVTITYGCNNFCTYCIVPYVRGREKSRNPEDIVREVEELAKQGFKEIN 197
Query: 130 LSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ +YG+D+G V P LL + DG +R ++P + + L +
Sbjct: 198 LLGQNVNSYGKDLGGAVTFPELLRRLN---DIDGIERIRFTTSHPKDLSDELIYAMRDCK 254
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
C + +H+PVQ+GS+ +L AMNR YT + +V L + + + I+TDII GFPGET
Sbjct: 255 KVCEH--IHLPVQAGSNRILEAMNRRYTREHYMELVKKLRDAISDIAISTDIIVGFPGET 312
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+EDF T++L++ ++ Q + + R GTPAA M+ +V V K+R L + ++ +
Sbjct: 313 EEDFQDTLDLVRRVEYDQAFMFVYSKRKGTPAAEMENQVDEDVKKERLDRLMRLQDSISA 372
Query: 307 Y--LGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
++G+V + + + + L G T+ V +++G V+IT WS
Sbjct: 373 KKNKALKGQVVEVLVEGPSRNNPEKLTGRTRTNKVVNFEGPADLIGKLVEVRITEPHTWS 432
Query: 364 VFGEVIK 370
+ GEV+K
Sbjct: 433 LIGEVLK 439
>gi|320162381|ref|YP_004175606.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
gi|319996235|dbj|BAJ65006.1| putative tRNA-thiotransferase [Anaerolinea thermophila UNI-1]
Length = 438
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 28/316 (8%)
Query: 69 LDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L LP+V R K V +P+ GC ACTYC + RG S E ++ R ++ GVKE
Sbjct: 137 LVLPEVERGKLVSAHIPVVYGCSHACTYCIIPYRRGIERSRPPEDILAEARALVRQGVKE 196
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L + YG+D P L ++ +G +R ++P ++ + L + L
Sbjct: 197 ITLLGQIVDRYGKD-NPAYPTLAGLLIRLSEIEGLERIRFLTSHPNWMTDELLDAVASL- 254
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V + VP Q+G D VL M R YT +R ++ + E +PG+ IATDII GFPGET
Sbjct: 255 -PKVMPHIEVPAQAGDDTVLENMKRGYTAEQYRELIARIRERIPGVSIATDIIVGFPGET 313
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTSVFEAF- 304
+E F T L+++ + H++++ PRPGT +AR K VP +R R L + E
Sbjct: 314 EEQFMNTYRLLEDLRLDVAHLARYSPRPGTVSARRMKDDVPEEEKMRRFRMLEELQERIV 373
Query: 305 ----TPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
YLG E +V++ W G T V V S ++ G V
Sbjct: 374 GEINARYLGESVPVLFEEKVKQRW-----------KGRTPTNKLVFVESEEDLHGQIREV 422
Query: 355 KITSVGRWSVFGEVIK 370
KIT G WS+ G + K
Sbjct: 423 KITWTGPWSMIGSLKK 438
>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
Length = 560
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 193 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 252
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 253 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 312
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 313 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 369
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 370 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 429
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 430 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 489
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 490 NKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 541
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 542 DAKTWSLNGELVE 554
>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
GD/7]
Length = 454
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 188/377 (49%), Gaps = 28/377 (7%)
Query: 13 KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPA 68
K L+V GC+ + +D + E+E V +++G + EVV E L+G +V+ + +P
Sbjct: 81 KALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKVKQFDDLQAMPE 140
Query: 69 LDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+D+ ++ + L I GC CTYC RG S++++ L+ + ++ A GVKE
Sbjct: 141 VDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQAESLAAQGVKE 200
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ + +++T YG D+ +L + +G + +R+ P I E L ++ +
Sbjct: 201 LNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEINEELIQV--IKE 258
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + +L +P+Q GSDAVL M R T ++ R+++ L E +P + + T +I GFPGET
Sbjct: 259 EPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREEIPDIALRTTLIAGFPGET 318
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV------F 301
+ D + + +K+ +F ++ + + GTPAA+M VK+ R+ + F
Sbjct: 319 EADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQIDEAVKETRRDALMMAQQAIAF 378
Query: 302 EAFTPYLG------MEGRV--ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSA 352
+ +G +EGR+ E ++I D + G+ V V + +M+ G
Sbjct: 379 DKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVDGY------VFVHAEEDMISGDIV 432
Query: 353 LVKITSVGRWSVFGEVI 369
VKIT + + G+VI
Sbjct: 433 KVKITDAQDYDLVGDVI 449
>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
Length = 436
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 186/375 (49%), Gaps = 20/375 (5%)
Query: 9 KSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LH 62
K K L++A GC+ Q ++ K + IV G + + E+V E + H+ ++ +
Sbjct: 68 KEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQINIE 127
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+L F +PI GC CTYC H RG S +E++V V+ +
Sbjct: 128 MDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKKLGQ 187
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L ++ +YG D G + L++A+ +P G +R MT+ P + K
Sbjct: 188 SGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRY-MTSHPQDMN--K 241
Query: 181 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ + L R V + LH+P+QSGS+ +L MNR YT+ ++ ++D E + G+ + TD+
Sbjct: 242 EMIDALGRSTNVVTQLHLPIQSGSNRILQKMNRRYTVEHYKELIDYCREKIKGLTLTTDL 301
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGET+EDF T+ L+K ++ + F R GTPAA M +VP V + R + L
Sbjct: 302 IVGFPGETEEDFQATLQLLKNIRYDMAYTFIFSKRSGTPAATMADQVPEEVKRVRLQALM 361
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNM-LGTSALV 354
V + L MEG+ I + + + + G T G +L P N+ +G +
Sbjct: 362 DVQNEISLELNKEMEGKTYEIIVEGPSRNDEDVWFGRTSGNKMILFPKDENLKIGQTVNA 421
Query: 355 KITSVGRWSVFGEVI 369
++ W ++G ++
Sbjct: 422 RVDRAQTWILYGTIV 436
>gi|15924566|ref|NP_372100.1| hypothetical protein SAV1576 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927156|ref|NP_374689.1| hypothetical protein SA1405 [Staphylococcus aureus subsp. aureus
N315]
gi|156979894|ref|YP_001442153.1| hypothetical protein SAHV_1563 [Staphylococcus aureus subsp. aureus
Mu3]
gi|255006362|ref|ZP_05144963.2| hypothetical protein SauraM_07835 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|13701374|dbj|BAB42668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247347|dbj|BAB57738.1| putative 2-methylthioadenine synthetase [Staphylococcus aureus
subsp. aureus Mu50]
gi|156722029|dbj|BAF78446.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
Length = 448
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 193/392 (49%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ ++++++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYVSKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 139 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEVWSKEGDV 198
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LP+ R+ K + I GC CTYC + RG S + ++ VR + A+G KE
Sbjct: 199 IENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKE 258
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 259 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 315
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 316 GGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASLTTDIIVGFPNET 375
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA MK VP V K+R + L ++ +
Sbjct: 376 DEQFEETLSLYREVEFDAAYTFIYSPREGTPAANMKDNVPMRVKKERLQRLNALVNEISA 435
Query: 307 --YLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+ + + + + L G+T V + +G VKIT WS
Sbjct: 436 KKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNIVKVKITQAKTWS 495
Query: 364 VFGEVI 369
+ GE++
Sbjct: 496 LDGEMV 501
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V I G I R+ E++ E E V + ++
Sbjct: 151 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 210
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 211 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKE 270
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 271 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 327
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 328 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 387
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 388 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 447
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 448 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 507
Query: 364 VFGEVI 369
+ GE++
Sbjct: 508 LDGEMV 513
>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
Length = 509
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G +E+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
Length = 432
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 196/393 (49%), Gaps = 49/393 (12%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 60
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFISDH---- 115
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 107
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRSYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 167
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHIAKIDGIERIRL 229
Query: 168 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 223
P I L+ +K+ + H H+ +QSGSD VL MNR+Y F+ V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283
Query: 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283
D + E P + TDII GFP E++++ QT + ++ KF + H+ ++ R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRNIKFSKTHLFKYSKRDGTKAANMK 343
Query: 284 -KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQ 338
+V K+RS+EL SV E + ++ ++ + ++ T+ DG + G++ Y++
Sbjct: 344 NQVDGNTKKRRSKEL-SVIEKKNSHEFLDKQIGKTLSVLFETKTELDG-YKSGYSTNYLR 401
Query: 339 VLVPSTGNMLGTSAL--VKITSVGRWSVFGEVI 369
V T + +G + + +KIT + G++I
Sbjct: 402 V---HTKDDVGINEIKDIKITQRIDDYLIGQII 431
>gi|429767146|ref|ZP_19299359.1| tRNA methylthiotransferase YqeV [Clostridium celatum DSM 1785]
gi|429181578|gb|EKY22735.1| tRNA methylthiotransferase YqeV [Clostridium celatum DSM 1785]
Length = 434
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 185/370 (50%), Gaps = 24/370 (6%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLK 54
+I++ + ++A GC Q +++ E+ GV +V G + VV V E +
Sbjct: 59 IISRARRTNPEAIIAAVGCYSQMAPKEVSEIPGVDVVLGTRNKGDVVYYVNKAKDEGQPQ 118
Query: 55 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
H +L KK L + + +K L I GC CTYC +ARG + S + ++
Sbjct: 119 VHVQPVLQNKKFEDLKIEDYQ-DKTRAFLKIQDGCNRFCTYCTIPYARGSVCSKDPDKVL 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
V+ + + G KEV LS T +YG D+ N+ ++ ++ E+ DG +RIG P
Sbjct: 178 SEVKELASHGFKEVILSGIHTASYGLDLEGNVTLI--GLIEEIEKIDGIERIRIGSIEPA 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
F + E + + C + H+ +QSG DA L MNR YT ++ V+ L E +P +
Sbjct: 236 FFTPEVIEKIKGFKKLCPH--FHLSLQSGCDATLKRMNRRYTAEEYEASVNLLRETLPDV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 292
I+TD+I GFPGET E+FN+T +K+ + H+ ++ PR GT AA M ++ + +
Sbjct: 294 SISTDVIVGFPGETKEEFNETYEYLKKIHLTKTHVFKYSPRKGTKAADMPNQIDGNIKDE 353
Query: 293 RSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPS-TGN 346
RS+ L + + AFT G+V + I + D G+T+ Y++V+V + +
Sbjct: 354 RSKLLIELNDKNEHAFTE--KFIGKVMDVLIEKEVKDKPDFYEGYTRNYIKVIVHCMSAD 411
Query: 347 MLGTSALVKI 356
+ G VKI
Sbjct: 412 ITGKIVDVKI 421
>gi|334126695|ref|ZP_08500644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
gi|333391366|gb|EGK62484.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
Length = 433
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----------VRLL 61
+ V GC Q +++ L GV +V G ++ R+V+ VE +L+ +E R+
Sbjct: 72 IAVTGCYAQVAPEEIRALAGVRVVIGTKERARIVDYVEASLRENEGIAGTITDIMQARVF 131
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ +P LP R L I GC CT+C +ARG + S + ++ +R +
Sbjct: 132 --EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRALSAVAREMRLLT 185
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
G EV L+ GAYG D+ + P L +A L + LR+G LE ++
Sbjct: 186 EAGFHEVVLTGIHLGAYGIDL-TDRPTLADACRTALAEEKLRRLRLGS------LESVEL 238
Query: 182 IAEVL----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
A++L P + LH+P+Q+GSD VL AMNR Y + F ++ + VPG+ ++T
Sbjct: 239 SADLLALMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAQLIAEVRTAVPGVALST 298
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRE 296
DII GFPGET+EDF + ++ F ++H+ + R GTPAA R +VP AV KKR+
Sbjct: 299 DIIVGFPGETEEDFATGMEFVRAMGFARMHVFPYSARKGTPAARRADQVPPAVRKKRAAR 358
Query: 297 LTSVFE 302
+ ++ E
Sbjct: 359 MQALAE 364
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 180/367 (49%), Gaps = 14/367 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V I G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPK RR + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 IENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + E +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKEAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
+E F +T++L +E +F + + PR GTPAA+M VP V K+R + L ++ +
Sbjct: 391 EEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERLQRLNALVNEISA 450
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V + +G V+IT W+
Sbjct: 451 RKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNFIGPKSAIGKLVKVRITEAKTWT 510
Query: 364 VFGEVIK 370
+ GE+++
Sbjct: 511 LNGEMVE 517
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V I G I R+ E++ E E V + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>gi|440751698|ref|ZP_20930901.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcystis aeruginosa
TAIHU98]
gi|440176191|gb|ELP55464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcystis aeruginosa
TAIHU98]
Length = 430
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 64 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 122
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G KE+
Sbjct: 123 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGYKEIT 181
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 182 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 241
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 242 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPDAAISADAIVGF 299
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 300 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKSDRLQRLNHLVA 359
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 360 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEELRGTFVK 414
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 415 VKITEVRPFSLTG 427
>gi|328948379|ref|YP_004365716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
DSM 2489]
gi|328448703|gb|AEB14419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Treponema succinifaciens
DSM 2489]
Length = 460
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 152/295 (51%), Gaps = 14/295 (4%)
Query: 15 LVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
L+V GC+ + R LK L+ +VG ++ E+++ +G + + +
Sbjct: 98 LIVMGCMAE--RLLKSLQKQWPCVDYVVGTFAKNKFGEIIQAVEEGQKYIQTDEEPVYVF 155
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
F +PI GC C+YC + RG S VE ++ + + GVKE+
Sbjct: 156 AETSYEEGAFSTFVPIMHGCNNFCSYCIVPYVRGREVSRPVEQILHELDVLARRGVKEIT 215
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM--LRIGMTNPP-FILEHLKEIAEVL 186
L ++ +Y G+N P LL I L S + +R +NP F E + IAE
Sbjct: 216 LLGQNVNSYKGADGMNFPNLLKTICRHLEQTNSPIEWIRFESSNPKDFSDELIDVIAEEK 275
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R + LH+ VQ GS+++L AMNR+YT + +V L E +P +Q+ TDI+ GFPGE
Sbjct: 276 R---ICRGLHIAVQHGSNSILKAMNRKYTREQYLLLVQKLRERIPEIQLTTDIMLGFPGE 332
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
T+EDF Q +L+KE +F + + PR GTPAA+M+ ++P V K+R +++ +
Sbjct: 333 TEEDFEQAASLMKEVEFESAFMYYYNPREGTPAAKMQNQIPLEVKKERLQKIIDI 387
>gi|229025211|ref|ZP_04181635.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
gi|228736144|gb|EEL86715.1| hypothetical protein bcere0029_35140 [Bacillus cereus AH1272]
Length = 425
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 58 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 117
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 118 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 177
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 178 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKAG 234
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 235 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 294
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 295 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 354
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 355 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 406
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 407 EAKTWSLNGELVE 419
>gi|407473971|ref|YP_006788371.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Clostridium acidurici 9a]
gi|407050479|gb|AFS78524.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Clostridium acidurici 9a]
Length = 456
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 158/305 (51%), Gaps = 9/305 (2%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+P R+ + ++ I GC CTYC + RG S E ++ ++ ++ + +EV L
Sbjct: 153 VPSKRKFDYKALVNITYGCNNFCTYCIVPYTRGRERSREPEDILKEIKELVKNNCEEVTL 212
Query: 131 SSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
++ +YG+ + + L ++ E+ DG +R ++P + + L I +
Sbjct: 213 LGQNVNSYGKTLKEQISFAELLRMINEI--DGLERIRFMTSHPKDLSDEL--IYAIRDCD 268
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V + +H+P Q+GS+++L AMNR YT + ++V L + VP + + TDII GFPGET+E
Sbjct: 269 KVCNHVHLPFQAGSNSILKAMNRRYTKEQYLSLVKKLKQEVPDISLTTDIIVGFPGETEE 328
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA--FTP 306
DF T++++KE KF + + R GTPAA M +VP V R R L +
Sbjct: 329 DFEDTLDVVKEVKFDSAYTFLYSIREGTPAATMDNQVPDDVKHNRFRRLLDTLNPIIYEN 388
Query: 307 YLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
L + V++I + E + +D L G T+ V +++G+ VKI +V WS+
Sbjct: 389 NLKFKDTVQKILVEEASKSDESMLSGRTETSKLVHFKGEKDLIGSIVNVKIDTVKTWSLE 448
Query: 366 GEVIK 370
G +++
Sbjct: 449 GHIVE 453
>gi|347542639|ref|YP_004857276.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985675|dbj|BAK81350.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 434
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 45/394 (11%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
IAKCK ++A GC PQ S+D E+ + V + +R ++ + +RL
Sbjct: 59 FIAKCKKINPNAIIAMVGCYPQVSKD--EVSNIKDVNIILGNRF-----KSQLAYYIRLF 111
Query: 62 --HRKKLPALDLPKVR------------RNKFVEILPINVGCLGACTYCKTKHARGHLGS 107
R ++ +D +R ++K + I GC CTYC ARG + S
Sbjct: 112 LETRNQVIKVDDNILRNITFEDRSIKTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCS 171
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLR 166
+ V++++++G KEV L+ ++ +YG D+ N+ ++ L ++ E+ DG +R
Sbjct: 172 KEPRKVFDEVKSLVSNGYKEVVLTGINSTSYGDDLSENINLVSLIELLDEI--DGLERIR 229
Query: 167 IGMTNPPF----ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 222
+G +P F I+ + +I + + H H+ +QSG D+VL M R+Y ++ ++ V
Sbjct: 230 VGSVDPEFFTTEIIVRISKIKKFMPH------FHLSLQSGCDSVLKRMRRKYDVALYKRV 283
Query: 223 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
V+ L + + I TDII GFP ETD +FN+T +K K +H+ ++ R GT AA M
Sbjct: 284 VEDLRREINDVSITTDIIVGFPAETDSEFNETYEFLKNIKLQDMHVFKYSKRSGTKAAEM 343
Query: 283 K-KVPSAVVKKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGY 336
+ +V + +RS++L + F YLG ++ ++ T I +DG + G+TK Y
Sbjct: 344 ENQVDERIKDERSKKLIELNKVNKFGFQKKYLGQT--LDVLYCTSI-SDGSGVYGYTKNY 400
Query: 337 VQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 370
+V++ + LG I + + G+ +K
Sbjct: 401 TKVVLNAGKEYLGEIVSTHIIDLKDDYLIGQHLK 434
>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
Length = 437
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH +
Sbjct: 64 LKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHTHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 124 ISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E + +
Sbjct: 239 MSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + + R
Sbjct: 297 VTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
+ L V + L MEG+V I + + D G T G VL P ++ +G
Sbjct: 357 LQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G ++K
Sbjct: 417 QTVPAHIDKAQTWVCYGSILK 437
>gi|345002462|ref|YP_004805316.1| RNA modification enzyme, MiaB family [Streptomyces sp. SirexAA-E]
gi|344318088|gb|AEN12776.1| RNA modification enzyme, MiaB family [Streptomyces sp. SirexAA-E]
Length = 497
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD ++ V +V G I ++ ++E E ++
Sbjct: 73 KTKRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 132
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 133 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 192
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 193 AEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGTIEGLERVRFTSPHPRDFTDDV-- 249
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD +L AM R Y F +++ + +P I+TDII
Sbjct: 250 IAAMAETPNVMPQLHMPMQSGSDRILKAMRRSYRQERFLGIIEKVRAAMPDAAISTDIIV 309
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M+ ++P VV++R L+++
Sbjct: 310 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMEGQIPKEVVQERYMRLSAL 369
Query: 301 FEAFT 305
E +
Sbjct: 370 QEEIS 374
>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
weihenstephanensis KBAB4]
gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
weihenstephanensis KBAB4]
Length = 509
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF---- 304
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYGVNK 438
Query: 305 -TPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|269837050|ref|YP_003319278.1| MiaB family RNA modification protein [Sphaerobacter thermophilus
DSM 20745]
gi|269786313|gb|ACZ38456.1| RNA modification enzyme, MiaB family [Sphaerobacter thermophilus
DSM 20745]
Length = 460
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 166/342 (48%), Gaps = 16/342 (4%)
Query: 38 GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 97
G Q +R+VE+ E L + L +LP P + +PI GC C+YC
Sbjct: 121 GPSQFERLVEIAPE-LAHVDTDL---AELPHFYQPDAAGSDVTAFVPIIYGCNFVCSYCI 176
Query: 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 155
+ RG S + ++ V + GVKEV L + AYG D+ +L LL A V
Sbjct: 177 VPYRRGRERSRPMAEVIAEVERLAERGVKEVTLLGQTVNAYGHDLPGSPDLADLLTA-VN 235
Query: 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 215
E+P G +R ++P ++ + + + L C + +++PVQ+G D VL M R YT
Sbjct: 236 EIP--GIERIRFLTSHPKYMSDRIVQAVATLPKACEH--INLPVQAGDDEVLRRMRRTYT 291
Query: 216 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 275
+ +R + + E +PG+ ++TDII GFPGET+E F +T++L+ E + +VH++ + PRP
Sbjct: 292 VDFYRERIAYIRETIPGVTVSTDIIVGFPGETEEQFQRTLDLLAELRLDKVHVAMYSPRP 351
Query: 276 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGI---HLVGH 332
T +AR + K+R + +A LG R EI DG+ G
Sbjct: 352 RTLSARWEDDIPWDEKRRRHQAVEKLQA--QILGERNRGYLGATFEILVDGMAKGRWRGR 409
Query: 333 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ 374
T+G V + G+ G V+IT W + GE + + +
Sbjct: 410 TRGNDLVFFEAPGDWKGKFVDVRITEASPWYLLGEPVAVRDH 451
>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
Length = 437
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 185/381 (48%), Gaps = 22/381 (5%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH +
Sbjct: 64 LKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHTHQ 123
Query: 60 L---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 124 ISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKE 181
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 182 VTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHPQD 238
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E + +
Sbjct: 239 MSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKDVV 296
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ TDII GFPGET++DF T+ L+K+ ++ + + R GTPAA M ++P + + R
Sbjct: 297 VTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKRVR 356
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM-LG 349
+ L V + L MEG+V I + + D G T G VL P ++ +G
Sbjct: 357 LQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLSIG 416
Query: 350 TSALVKITSVGRWSVFGEVIK 370
+ I W +G ++K
Sbjct: 417 QTVPAHIDKAQTWVCYGSILK 437
>gi|390564718|ref|ZP_10245485.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Nitrolancetus hollandicus Lb]
gi|390172031|emb|CCF84810.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Nitrolancetus hollandicus Lb]
Length = 424
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 181/377 (48%), Gaps = 29/377 (7%)
Query: 5 IAKCKSAKKPLVVA--GCVPQG--SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 59
+A+ K A + +A GC+ G +R + V + G + DR+VE+ E L +
Sbjct: 52 LARLKRANPHVRIALTGCMVTGQQARLAERFPHVDLFYGPSEFDRLVEIAPE-LSEVDAD 110
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L +LP +PI GC C+YC + RG S + +V +R
Sbjct: 111 L---AELPHFYQDGAASPDVTAYVPIIYGCNFVCSYCIVPYRRGREVSRPMADIVTEIRQ 167
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
++A GVKE+ L + AYG D+ + P L + ++A DG +R ++P ++ + +
Sbjct: 168 MVARGVKEITLLGQTVNAYGHDLPEH-PDLADLLMAVEEVDGLERVRFLTSHPKYMSDRI 226
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
+ V + +++PVQ+G + VL M R YT+ +R + ++ +PG+ IATDI
Sbjct: 227 --VQAVADGSKICEHINLPVQAGDNEVLRRMRRTYTVEHYRERIASIRAAIPGVTIATDI 284
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFPGETDE F T +L+++ + +VH++ + PRPGT ++R + +P A K+R R +
Sbjct: 285 IVGFPGETDEQFQHTYDLLEDLRCEKVHVAMYSPRPGTLSSRWEDDIPWAEKKRRHRAIE 344
Query: 299 SVFEAFTP-----YLGMEGRVERIWITEIAADGI---HLVGHTKGYVQVLVPSTGNMLGT 350
+ E Y+G E+ DG G T+G V S GN G
Sbjct: 345 KLQERVCTERNQGYVGQ--------TLEVLVDGFAKGRWRGRTRGNTLVFFESEGNWQGE 396
Query: 351 SALVKITSVGRWSVFGE 367
+ +T W + GE
Sbjct: 397 LVDIHVTESTPWYLLGE 413
>gi|386382719|ref|ZP_10068312.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
tsukubaensis NRRL18488]
gi|385669830|gb|EIF92980.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
tsukubaensis NRRL18488]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 13/299 (4%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-- 69
+ V GC+ Q RD +K V +V G I ++ ++E E ++ + L A
Sbjct: 66 IAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIAESLEAFPS 125
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R + + + I+VGC CT+C RG ++ + ++A+GV E+
Sbjct: 126 TLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEALVAEGVSEIT 185
Query: 130 LSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ AYG DIG LL A +G +R +P + + IA +
Sbjct: 186 LLGQNVNAYGSDIGDREAFSKLLRACGG---IEGLERVRFTSPHPRDFTDDV--IAAMAE 240
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH+P+QSGSDAVL AM R Y F +++ + +P I+TDII GFPGET
Sbjct: 241 TPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIEKVRAAIPHAAISTDIIVGFPGET 300
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV+ R L ++ E +
Sbjct: 301 EEDFEQTLHTVREARFANAFTFQYSKRPGTPAATMDGQIPKEVVQARYERLVALQEEIS 359
>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 432
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 182/361 (50%), Gaps = 44/361 (12%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 60
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFINDH---- 115
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 107
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRAYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 167
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHISKIDGIERIRL 229
Query: 168 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 223
P I L+ +K+ + H H+ +QSGSD VL MNR+Y F+ V
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTKIFKEKV 283
Query: 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283
D + E P + TDII GFP E++++ QT + +++ KF + H+ ++ R GT AA MK
Sbjct: 284 DLIREYFPNAGLTTDIIVGFPNESEKNHEQTKDFVRDIKFSKTHLFKYSKRDGTKAASMK 343
Query: 284 -KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQ 338
+V K+RS+EL SV E + ++ ++ + ++ T+ DG + G++ Y++
Sbjct: 344 DQVDGNTKKRRSKEL-SVIEKKNSHEFLDNQIGKTLSVLFETKTELDG-YKSGYSTNYLR 401
Query: 339 V 339
V
Sbjct: 402 V 402
>gi|222529273|ref|YP_002573155.1| MiaB family RNA modification protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222456120|gb|ACM60382.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor bescii
DSM 6725]
Length = 434
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 198/387 (51%), Gaps = 37/387 (9%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S + +VV GC PQ ++++++E V I+ G + ++V+ V + L+ +
Sbjct: 63 AKKLSPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQKIVDYVRQYLED-------K 115
Query: 64 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 111
KK+ A++ +R F E+ + I GC C+YC +ARG + S +++
Sbjct: 116 KKIVAIN-EDYKREAFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLK 174
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171
S+ V ++ G KE ++ + +YG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVIRLVQKGYKEFVITGINISSYGKDLDEKVT-LIDVIERVNKIEGVKRIRLSSLE 233
Query: 172 PPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
P + +E L ++ H LH+ +QSGSD +L MNR YT + ++++VD +
Sbjct: 234 PVIMNGEFIERLLSFDKLCHH------LHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIR 287
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 286
E + TDII GFPGET+EDFN T++ +++ F ++H+ +F P+ GT A M +V
Sbjct: 288 EKWDDVAFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVD 347
Query: 287 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPST 344
S ++RS+ + V + + + G+ + I + + + G++ Y++ L+ +
Sbjct: 348 SKEKERRSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKS 407
Query: 345 GNML-GTSALVKITSVGRWSVFGEVIK 370
++ G VKIT R V GE+I+
Sbjct: 408 HMIVHGEIYKVKITQAYRQYVKGEIIQ 434
>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
acidovorans SPH-1]
gi|333916610|ref|YP_004490342.1| MiaB family RNA modification protein [Delftia sp. Cs1-4]
gi|229890511|sp|A9BUQ1.1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
SPH-1]
gi|333746810|gb|AEF91987.1| RNA modification enzyme, MiaB family [Delftia sp. Cs1-4]
Length = 442
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 178/366 (48%), Gaps = 17/366 (4%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD-L 71
V GCV +G +K V +V G Q + R+ E++ H+ ++ + ++ D L
Sbjct: 78 VGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHKPQVDISFPEIEKFDHL 137
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P R + I GC C+YC + RG S E ++ V + GVKEV L
Sbjct: 138 PPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLIEVAGLADQGVKEVTLL 197
Query: 132 SEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
++ AY +G I LL V+E+P G +R ++P L I R
Sbjct: 198 GQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSHPNEFTPRL--IEAYAR 253
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + S LH+PVQ GSD +L AM R YT ++++ + L + P M +++D I GFPGET
Sbjct: 254 LPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRPEMAMSSDFIVGFPGET 313
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+EDF + + LI + +F F PRPGTPAA + P V +R +EL +V
Sbjct: 314 EEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVKLRRLQELQAVINNNIK 373
Query: 307 YLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
+ E G V+R+ + ++ DG L+G T+ V P ++G VKIT ++
Sbjct: 374 DISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNFPGNERLIGQMIDVKITEARTFT 433
Query: 364 VFGEVI 369
+ GEV+
Sbjct: 434 LRGEVV 439
>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
Length = 446
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 181/376 (48%), Gaps = 30/376 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEMEQLGQQGYQEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 376 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEELRGTFVK 430
Query: 354 VKITSVGRWSVFGEVI 369
VKIT V +S+ G +
Sbjct: 431 VKITEVRPFSLTGAIF 446
>gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t.
morphotype B']
Length = 474
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 181/376 (48%), Gaps = 17/376 (4%)
Query: 7 KCKSAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE- 57
K + K P + + GC+ Q LK L+ I G I ++ E+++ ++ E
Sbjct: 96 KHRKKKXPNFMVALCGCMMQQDVVLKTLKQKYKFVDIIFGTYNIYKLPELLQTRIETGEN 155
Query: 58 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ + + DLP +R+++F + I GC CTYC + RG S V+ + +
Sbjct: 156 IIDIWETHQEIVEDLPSIRKHQFKSCVNIMYGCNNFCTYCIVPYVRGRERSREVDDIYDQ 215
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 176
V+ ++ DGVKE+ L ++ +YG+++ P + + DG +R ++P
Sbjct: 216 VKALVDDGVKEIMLLGQNVNSYGKNLATK-PTFTDLLERLASIDGLKRIRFMTSHPKDFS 274
Query: 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
L I + +H + LH+P+QSGS +L MNR YT ++ +V + + +P +
Sbjct: 275 XQL--IDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKIKKAIPSATLT 332
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 295
TDII GFPGE+D DF T++++ + ++ + R GTPAA M+ +V V+K R
Sbjct: 333 TDIIVGFPGESDSDFADTLDVVTQIQYLSAFTFIYSKRTGTPAATMENQVDEDVIKARFN 392
Query: 296 ELTSVFEAFTP-YLGME-GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+L + ++ + G I + + + D L G T + V V + N +G
Sbjct: 393 QLVAAVNTIAADFMAAQIGNTYEILLEDSSKNDATMLSGRTDTGILVHVKAPLNFIGEFV 452
Query: 353 LVKITSVGRWSVFGEV 368
V+IT+ + GE+
Sbjct: 453 TVQITNSKTHYLVGEI 468
>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGYQEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 376 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEKLRGTFVK 430
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 431 VKITEVRPFSLTG 443
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V I G I R+ E++ E E V + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>gi|169832193|ref|YP_001718175.1| MiaB-like tRNA modifying protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169639037|gb|ACA60543.1| MiaB-like tRNA modifying enzyme [Candidatus Desulforudis
audaxviator MP104C]
Length = 450
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 174/363 (47%), Gaps = 24/363 (6%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP 72
+VV GC Q + + GVS+V G +R+V++VE+ V + P L +
Sbjct: 73 VVVTGCYAQVAPEEAGAIPGVSLVIGTSGRERIVDLVEQAAARCPVPAEKKGPGPFLAVG 132
Query: 73 KVRRNKFVEILP-------------INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ + + E LP + GC CTYC +ARG L S E ++ R
Sbjct: 133 DIEQAREFEDLPGTADPGRTRAFIKVQEGCRDFCTYCIVPYARGPLRSRPPERVLELARG 192
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
++ G E+ L+ + GAYGRD+G NLP L+ +V +P G LR+ P I
Sbjct: 193 LVDRGYSELVLTGVNLGAYGRDLGTENLPGLVRRLV-RIP--GLARLRLSSVEPNEITRE 249
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E V +P H+P+QSGSD+VLS M R Y+ +F +VD + VP + + D
Sbjct: 250 LVEA--VAENPVCAPHFHIPLQSGSDSVLSRMGRRYSTGEFTGLVDMVRARVPEVAVTAD 307
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
++ GFPGET + +++ ++ F +H+ + PR GTPAA VP V K+RSRE+
Sbjct: 308 VMVGFPGETAAEHRESLEYVRRIGFAGLHVFVYSPRRGTPAASFPDPVPYRVKKERSREM 367
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
++ R + + + G G+T Y++V + + G +VK+
Sbjct: 368 LALGRELRDRFASRYRGRTVEVLVESVSGGVASGYTPNYLRVFFKNGPELAGR--IVKVY 425
Query: 358 SVG 360
+ G
Sbjct: 426 ADG 428
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 139 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEVWSKEGDV 198
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LP+ R+ K + I GC CTYC + RG S + ++ VR + A+G KE
Sbjct: 199 IENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKE 258
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 259 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 315
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 316 GGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASLTTDIIVGFPNET 375
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 376 DEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERLQRLNALVNEISA 435
Query: 307 --YLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+ + + + + L G+T V + +G VKIT WS
Sbjct: 436 KKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNIVKVKITQAKTWS 495
Query: 364 VFGEVI 369
+ GE++
Sbjct: 496 LDGEMV 501
>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 471
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 183/382 (47%), Gaps = 25/382 (6%)
Query: 5 IAKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKG 55
+ + K K L+ V GC+PQ ++L V I G + + + +++ + T K
Sbjct: 98 LKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAITTKK 157
Query: 56 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 158 TVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIF 217
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELPPDGSTMLRIGMT 170
++ + A+GVKEV L ++ +YG+D+ +P +NAI +G +R +
Sbjct: 218 EIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNAI------EGIERIRFVTS 271
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+P + + L L C + +H+PVQSGS +L MNR YT D+ +V+ L E +
Sbjct: 272 HPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLKENI 329
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 289
P + I TDII GFPGET+EDF T++++++ +F + + R GT AA+M +VP V
Sbjct: 330 PDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQVPDEV 389
Query: 290 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+R + L + E A M G+V I I + L G T+ V V +
Sbjct: 390 KHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKCSDEF 449
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
+ VKI R ++GEVI
Sbjct: 450 MYKFVNVKILEASRHWLYGEVI 471
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 30/371 (8%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 143 LGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKEMVVEVWSKEGDI 202
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVRR + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 203 IENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 262
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ E+ +R ++P +HL E+ + +
Sbjct: 263 ITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDFDDHLIEV--LAK 319
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+YT ++ +V + +P + + TDII G+P ET
Sbjct: 320 GGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVALTTDIIVGYPNET 379
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF----- 301
+E F +T++L +E F + + PR GTPAA+M+ VP V K+R + L ++
Sbjct: 380 EEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNELSR 439
Query: 302 EAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVK 355
+A Y G I E+ +G L G+T+ V + +G VK
Sbjct: 440 DAMKKYQGQ--------IVEVLVEGESKNNPDVLAGYTRKNKLVNFTGPKSAIGKIVKVK 491
Query: 356 ITSVGRWSVFG 366
IT WS+ G
Sbjct: 492 ITEAKTWSLNG 502
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVFTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|70726341|ref|YP_253255.1| hypothetical protein SH1340 [Staphylococcus haemolyticus JCSC1435]
gi|68447065|dbj|BAE04649.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 448
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 25/377 (6%)
Query: 17 VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLPAL 69
V GC Q S ++ E+ GV +V G Q ++++ +++ + + ++ + L
Sbjct: 75 VTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLDYIQQFREERQPINGVGNIMKNRTYEEL 134
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D+P ++ L I GC CT+C ARG + S E +V + ++ G KE+
Sbjct: 135 DVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNAGYKEIV 193
Query: 130 LSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILEHLKEIAE 184
L+ TG YG+D+ NL LL + E+ DG +RI +++ LK +
Sbjct: 194 LTGIHTGGYGQDLKDYNLAQLLRDL-EEI--DGLERIRISSIEASQLTDEVIDVLKRSNK 250
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V+RH LHVP+QSGSD VL M R+YT+ F + L + +P + + +D+I GFP
Sbjct: 251 VVRH------LHVPLQSGSDTVLKRMRRKYTMEHFSERIMKLHDALPDLAVTSDVIVGFP 304
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+E+F +T + I ++KF ++H+ + R GTPAARM ++ + +R +L ++ +
Sbjct: 305 GETEEEFQETYDFIVKHKFSELHVFPYSARIGTPAARMDDQIDETIKNERVHKLITLSDQ 364
Query: 304 FTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
+ E + + A I LVG+ Y++V +++G VKI
Sbjct: 365 LAKEYASKFEDEVLEVIPEEAGEIEGTLVGYADNYMKVQFEGNDSLIGQIVKVKIAKADY 424
Query: 362 WSVFGEVIKILNQVDDK 378
G+V++I+ +K
Sbjct: 425 PINKGKVVRIVEHATNK 441
>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
Length = 446
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 180/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G KE+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + E+ D ++G T+G L TGN + G
Sbjct: 376 TKAAERSQRYL---GRIEEILVEEVNPKDASQVMGRTRG--NRLTFFTGNLEELRGKFVK 430
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 431 VKITEVRPFSLTG 443
>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + K V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKATVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIINEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ ++
Sbjct: 379 QFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSIEK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V + + + VK+T
Sbjct: 439 NKRYVGQ--------IVEVLVDGESKNNPDVLAGYTRANKLVNFVAPKSAIAQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|335044819|ref|ZP_08537842.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333758605|gb|EGL36162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 476
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 9/304 (2%)
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LP R+ F + I+ GC CTYC + RG S +V ++ DGVKE+
Sbjct: 178 NLPSKRKYPFRASVNISFGCNNFCTYCIVPYVRGREKSRDSREIVKECEALVRDGVKEIM 237
Query: 130 LSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ +YG R+ ++ P LL VA++P G +R NP E L + +
Sbjct: 238 LLGQNVNSYGLDREEELSFPELLRE-VAKIP--GLRRIRFMTPNPKDFSEELLSVIQENE 294
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ C + +H+P+QSGS +L MNR YT + +++ + E +P + + TDII GFPGET
Sbjct: 295 NIC--NHIHLPLQSGSTNILKRMNRHYTKESYLSLLRKIKERLPELGLTTDIIVGFPGET 352
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-SRELTSVFEAFTP 306
+EDF T+++++E KF Q+ R GTPAA+ V +V +R R L +V E+
Sbjct: 353 EEDFQDTLDVVREAKFDSAFTFQYSKRSGTPAAKWDAVDEKIVAERFQRLLDTVRESSKE 412
Query: 307 YLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
G + G+V + + E + L G + + V +LG VK+ + +
Sbjct: 413 REGKDLGKVMEVLVEERNTETNMLTGRLENNILVHFEGGERLLGEIVPVKLEKSMGFYYY 472
Query: 366 GEVI 369
G V+
Sbjct: 473 GSVV 476
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|443649468|ref|ZP_21130254.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcystis aeruginosa
DIANCHI905]
gi|443334950|gb|ELS49438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Microcystis aeruginosa
DIANCHI905]
Length = 422
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 56 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 114
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 115 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGYQEIT 173
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 174 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 233
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 234 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPDAAISADAIVGF 291
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 292 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 351
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 352 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEKLRGTFVK 406
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 407 VKITEVRPFSLTG 419
>gi|168179386|ref|ZP_02614050.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
2916]
gi|182669715|gb|EDT81691.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
2916]
Length = 432
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 190/376 (50%), Gaps = 26/376 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LL 61
+++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 66 QNSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVL 125
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
K+ L++ + R +K L I GC C+YC ARG + S E ++ V+ +
Sbjct: 126 RNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVKKLS 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLK 180
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 185 KHGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIERIRIGSIDPTFFTEE-- 240
Query: 181 EIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I T
Sbjct: 241 ---EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITT 297
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+E+FN+T +++ K ++H+ +F PR GT A MK +V + ++RS +
Sbjct: 298 DIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKEERSNK 357
Query: 297 LTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+ ++ + M +E+ ++ E GI G+T Y+++ S+ ++ G
Sbjct: 358 IINLDKDLEKEF-MNKFIEKEMPVLYEQETKEKGI-FEGYTPNYIKIYSKSSKDITGEII 415
Query: 353 LVKITSVGRWSVFGEV 368
+ V + + GE+
Sbjct: 416 NTTLKEVSKDFIKGEI 431
>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQCLNTLVNEYAINK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NKHYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|170758363|ref|YP_001788268.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
gi|169405352|gb|ACA53763.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
Loch Maree]
Length = 432
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 190/376 (50%), Gaps = 26/376 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LL 61
+++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 66 QNSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVL 125
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
K+ L++ + R +K L I GC C+YC ARG + S E ++ V+ +
Sbjct: 126 RNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVQKLS 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLK 180
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 185 KHGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIQRIRIGSIDPTFFTEE-- 240
Query: 181 EIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I T
Sbjct: 241 ---EIMRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITT 297
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+E+FN+T +++ K ++H+ +F PR GT A MK +V + ++RS +
Sbjct: 298 DIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKEERSNK 357
Query: 297 LTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+ ++ + M +E+ ++ E GI G+T Y+++ S+ ++ G
Sbjct: 358 IINLDKDLEKEF-MNKFIEKEMPILYEQETKEKGI-FEGYTPNYIKIYSKSSKDITGEII 415
Query: 353 LVKITSVGRWSVFGEV 368
+ V + + GE+
Sbjct: 416 NTTLKEVSKDFIKGEI 431
>gi|440682816|ref|YP_007157611.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
gi|428679935|gb|AFZ58701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
Length = 454
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 187/382 (48%), Gaps = 30/382 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFDGNQVVATEAMHIIE-DI 138
Query: 72 PKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+ RR+ V + I GC CTYC + RG S T ++ + + G KE+ L
Sbjct: 139 TQPRRDSEVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEMEELGKQGYKEITL 198
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-KE 181
++ AYGRD+ G +L L + + V ++P G LR ++P + E L K
Sbjct: 199 LGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GVERLRFATSHPRYFTERLIKA 256
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +P I+ D I
Sbjct: 257 CAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRRYMPDASISGDAIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S VK +R L
Sbjct: 314 GFPGETEAQFENTMKLVDDIGFDLLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHL 373
Query: 298 TSV--FEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSAL 353
+V E Y GR+E I + T+ D ++G T+G N L G
Sbjct: 374 VNVKAAERSQRYF---GRIEEILVETQNTKDKTQVMGRTRGNRLTFFNGDINELQGKLVQ 430
Query: 354 VKITSVGRWSVFGEVIKILNQV 375
VKIT V +S+ GE + + + V
Sbjct: 431 VKITEVRPFSLTGEPVAVRDAV 452
>gi|308069953|ref|YP_003871558.1| hypothetical protein PPE_03202 [Paenibacillus polymyxa E681]
gi|305859232|gb|ADM71020.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 447
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 187/377 (49%), Gaps = 30/377 (7%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR-LLHRKKLP 67
+ V GC Q S ++ ++ GV +V G Q D+++ V+E + + VR ++ +
Sbjct: 74 VAVTGCYAQTSPAEIMDIPGVDLVIGTQDRDKIIPFVQEIQETRQPVNAVRNIMKTRVFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+D+P N L I GC CT+C +RG S S++ + R ++ G KE
Sbjct: 134 EMDVPDFA-NHTRAFLKIQDGCNNFCTFCIIPWSRGLSRSRDAASIIAQARQLVHAGYKE 192
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEI---- 182
+ L+ TG YG D+ L+ ++ +L +G +RI I E + ++
Sbjct: 193 IVLTGIHTGGYGDDMD---NYDLSDLLWDLEKVEGLERIRISSIEASQIDEKMLDVLNRS 249
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
+++RH H+P+Q+G D VL M R+YT +F + + + +P + I TD+I G
Sbjct: 250 TKLVRH------FHIPLQAGDDTVLKRMRRKYTTEEFYNKMLMIRKAMPDVAITTDVIVG 303
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301
FPGETDE F L+K+ F ++H+ + R GTPAARM+ +V V R EL +
Sbjct: 304 FPGETDEMFRNGYELMKKIGFSEMHVFPYSKRSGTPAARMEDQVDEDVKNARVHELIQLS 363
Query: 302 EAFTPYLGME--GRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLGTSALVK 355
E + G+V + I E+A G L G++ Y+Q++ T +M+G VK
Sbjct: 364 EQMQLAYAEKFVGQVLEV-IPEVAPKGTEDSGILYGYSDNYIQLVFEGTEDMVGKVCRVK 422
Query: 356 ITSVGRWSVFGEVIKIL 372
+T G G+++++L
Sbjct: 423 LTKAGINESEGQLVRVL 439
>gi|282883211|ref|ZP_06291810.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
gi|281297023|gb|EFA89520.1| protein YqeV [Peptoniphilus lacrimalis 315-B]
Length = 431
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 187/381 (49%), Gaps = 32/381 (8%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK ++ + V GC Q ++++++EGV +V G + ++V+++EE +
Sbjct: 66 AKRENPDSTVAVVGCYAQVAPKEVEKIEGVDVVIGTSERSKIVDLIEEAKE-------ED 118
Query: 64 KKLPAL-DLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVES 112
KK+ + D+ K R +F++I + + GC CTYC +ARG + S +
Sbjct: 119 KKINIVRDIKKDRDFQFIKIDENFHKTRSYMKVQDGCNRYCTYCIIPYARGTIRSRRIGD 178
Query: 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTN 171
V + G KE+ L+ G+YG D+G V L L+ AI AE+ DG +R+
Sbjct: 179 CVREAIRLANAGYKEIILTGIHVGSYGVDLGPVRLIDLIEAI-AEV--DGIERIRLSSVE 235
Query: 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
P I E A C H+ +QSGS+ VL MNR Y +F + + +P
Sbjct: 236 PNIISEDFMRRAIACSKLC--DHFHLSLQSGSNKVLKDMNRHYNREEFIEKTKIIKKYMP 293
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 290
+ TDII GFPGE+DEDF ++++++E +F +VH+ ++ R TPAA R +V +
Sbjct: 294 YAGLTTDIIVGFPGESDEDFEDSMSIVREVEFSKVHVFKYSKRKNTPAADRADQVDGNIK 353
Query: 291 KKRSRELTSVFEAFTPYLGMEG--RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 348
KRS EL + + + + R ++ E D + G+T Y++V V S +++
Sbjct: 354 IKRSEELIKLQDQYLKKFREKNMPRTLKVLFEEF--DQGYYFGYTDNYIRVKVKSDKDLI 411
Query: 349 GTSALVKITSVGRWSVFGEVI 369
V++ FGE++
Sbjct: 412 NKILDVRLVD-NEEVAFGELV 431
>gi|418413956|ref|ZP_12987172.1| MiaB/RimO family radical SAM methylthiotransferase [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|410877594|gb|EKS25486.1| MiaB/RimO family radical SAM methylthiotransferase [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 451
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 185/381 (48%), Gaps = 25/381 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV +V G Q +++ ++E K + ++
Sbjct: 70 KNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDEFQKERQPINGVGNIM 129
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + +V + T++
Sbjct: 130 KNRTYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKKVVEQATTLV 188
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
KE+ L+ TG YG+D+ NL LL + DG +RI + + +
Sbjct: 189 NADYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLET---IDGLERIRISSIEASQLTDEVI 245
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++ E V+RH LH+P+QSGSD+VL M R+YT+ F + L + +P + +
Sbjct: 246 DVIEKSNKVVRH------LHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALPDLAVT 299
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGETDE+F +T + I ++KF ++H+ + R GTPAARM ++ V +R
Sbjct: 300 SDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKNERVH 359
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSAL 353
+L ++ + + + + + H LVG+ Y++V +++G
Sbjct: 360 KLIALSDQLAKEYASKFEDDVLEVIPEEKGSFHGSLVGYADNYMKVQFDGDESLIGQIVK 419
Query: 354 VKITSVGRWSVFGEVIKILNQ 374
VKI GE ++++
Sbjct: 420 VKIVHADYPLNKGEALRVVEH 440
>gi|333371675|ref|ZP_08463619.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desmospora sp. 8437]
gi|332975771|gb|EGK12652.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Desmospora sp. 8437]
Length = 448
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 22/382 (5%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLL 61
K+ + + V GC Q S ++ ++ GV +V G Q D++++ +EE + + ++
Sbjct: 67 KNPEAVVAVTGCYAQTSSAEIMDIPGVDVVVGTQGRDKLLQYIEEHRQTRQPVNAVKNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
++ +D+P L I GC CT+C ARG L S ES++ + R ++
Sbjct: 127 KTREFEEMDVPSFSERTRAS-LKIQEGCNNFCTFCIIPWARGLLRSRKPESVLRQARQLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG D L ++ +L +G +RI I + +
Sbjct: 186 DAGYKEIVLTGIHTGGYGEDFE---DYKLADLLWDLDKVEGLKRIRISSIEASQIDDRVI 242
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
++ C + LH+P+Q+G D VL M R YT+ ++R ++ L +PG+ I +D+I
Sbjct: 243 DVLNKSDKMCRH--LHIPLQAGDDVVLKRMRRRYTVDEYRRKIEHLHRAMPGVAITSDVI 300
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 299
GFPGET+E F LI+E F ++H+ + R GTPAARM +VP+ V + R L +
Sbjct: 301 VGFPGETEEQFENGYRLIEELGFSELHVFPYSTRTGTPAARMTDQVPAEVKQDRVARLIA 360
Query: 300 VFE--AFTPYLGMEGRVERIWITE----IAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + A T G V + I E D L G++ Y+Q+ P ++G
Sbjct: 361 LSDRLALTYASKYAGEVLEV-IPEGPLKDDPDSGWLAGYSDNYLQIAFPGNEELVGQVCR 419
Query: 354 VKITSVGRWSVFGEVIKILNQV 375
V++ G G ++ +++V
Sbjct: 420 VRLDQPGSEYSQGTFVRTMDEV 441
>gi|166031818|ref|ZP_02234647.1| hypothetical protein DORFOR_01519 [Dorea formicigenerans ATCC
27755]
gi|166028271|gb|EDR47028.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Dorea formicigenerans
ATCC 27755]
Length = 470
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 179/376 (47%), Gaps = 18/376 (4%)
Query: 7 KCKSAKKPLVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLL 61
K K+ + + GC+ Q +++L I G I + E++ +G + +
Sbjct: 100 KKKNPHMKIALCGCMMQEPEVVEKLRTSYRFVDLIFGTHNIYKFAELITAVYEGGRMVID 159
Query: 62 HRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
K + DLP R+ F + I GC C+YC + RG S E++V +
Sbjct: 160 IWKDTDKIVEDLPNDRKYSFKSGVNIMFGCNNFCSYCIVPYVRGRERSRKPEAIVREIER 219
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILE 177
++ADGV EV L ++ +YG+++ LP LL I +G +R ++P + +
Sbjct: 220 LVADGVTEVMLLGQNVNSYGKNLEEPLPFAELLQKIEQ---IEGLHRIRFMTSHPKDLSD 276
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ + C + LH+PVQSGS +L MNR YT + +VD + VP + + T
Sbjct: 277 ELIEVMGKSKKICKH--LHLPVQSGSSRILKKMNRHYTKEQYLELVDKIRAAVPDISLTT 334
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+EDF +T++++++ ++ + R GTPAA M+ +VP VVK R
Sbjct: 335 DIIVGFPGETEEDFLETLDIVRKVRYDSAFTFIYSKRTGTPAATMEDQVPEEVVKDRFDR 394
Query: 297 LTSVFEAFTPYLGM--EGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSAL 353
L + + EG V+ + + ++ H+V G + V +M+G
Sbjct: 395 LLKEVQTIAAEVCAVHEGTVQEVLVESVSDHDDHMVTGRLSNNILVHFRGDASMIGDYVN 454
Query: 354 VKITSVGRWSVFGEVI 369
VK+ + GE +
Sbjct: 455 VKLDQCKGFYYIGEQV 470
>gi|307243292|ref|ZP_07525459.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
gi|306493310|gb|EFM65296.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
Length = 431
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 187/372 (50%), Gaps = 34/372 (9%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK 64
K K+ + V GC Q S ++ ++E V++V G +V+ V++ +V +
Sbjct: 65 KKKNPNSIIAVVGCYSQVSPEEILDIEDVNLVMGTNDRRTIVDKVDKIDSNSKVSTVD-- 122
Query: 65 KLPALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
D+ KVR + +EI + I GC C+YC +ARG + S +S++
Sbjct: 123 -----DIMKVREFEEIEISQTNGKTRAFIKIQDGCDRYCSYCIIPYARGRIRSRDRQSII 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 173
+ + A+G KEV L+ +YGRD+ ++ IL ++ ++ +G +R+ P
Sbjct: 178 EEIEKLAANGYKEVVLTGIHVASYGRDLDEDIDIL--TVIKDVNKVEGIERIRLSSVEPV 235
Query: 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233
E I ++ + + H+ +QSG DA L MNR YT D++ VD L +P +
Sbjct: 236 LFTEDF--IDQISKIDKLVPHYHLSLQSGCDATLKRMNRRYTTEDYKRTVDNLRARIPRV 293
Query: 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 292
+ TD+I GFPGET+E+F+QT+ +K+ K +H+ ++ PR GTPAA M+ +V + +
Sbjct: 294 SLTTDVIVGFPGETNEEFSQTLAYLKDLKLMHMHVFKYSPRKGTPAAVMEDQVDPQMKQM 353
Query: 293 RSREL----TSVFEAFTP-YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
RS L T F+ F ++ + +V E+ DG + G T Y+++ V S ++
Sbjct: 354 RSDSLLALSTKNFKLFADQFINTDLKV---LFEEVDKDG-YYEGLTDNYMRIKVRSDLDI 409
Query: 348 LGTSALVKITSV 359
G V+I +
Sbjct: 410 RGQILPVRIEEI 421
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVIEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGQVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
Length = 452
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 189/375 (50%), Gaps = 30/375 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V + D+
Sbjct: 80 LIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVATDAVHIME-DI 138
Query: 72 PKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
K RR+ K + + GC CTYC + RG S T +++ + + G KEV L
Sbjct: 139 TKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEMEELGRQGYKEVTL 198
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-KE 181
++ AYGRD+ G N L + + V+++P G +R ++P + E L K
Sbjct: 199 LGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFATSHPRYFTERLIKA 256
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
AE+ P V H+P QSG + +L AM R YT +R +++T+ + +P I+ D I
Sbjct: 257 CAEL---PQVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIETIRQYMPDASISADAIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSV 300
GFPGE++ F +T+NL+ + +F V+ + + PRPGTPAA S VK R + L V
Sbjct: 314 GFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTPAALWDTQLSEEVKADRLQRLNHV 373
Query: 301 -----FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLGTSAL 353
E YL GR+E + + + D ++G +G + L + + G
Sbjct: 374 VTQTAMERSQRYL---GRIEEVLVEDQNQKDATQVMGRGRGNRLTFLRGNIEELRGQLVQ 430
Query: 354 VKITSVGRWSVFGEV 368
VKIT V +S+ G++
Sbjct: 431 VKITDVRAFSLTGDL 445
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|170747073|ref|YP_001753333.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium radiotolerans JCM 2831]
gi|229890617|sp|B1LWE8.1|MIAB_METRJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|170653595|gb|ACB22650.1| RNA modification enzyme, MiaB family [Methylobacterium
radiotolerans JCM 2831]
Length = 445
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 185/377 (49%), Gaps = 23/377 (6%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + +VVAGCV Q G+ V +V G Q R+ +++ + E R++
Sbjct: 72 KAQGLDTRIVVAGCVAQAEGAEIQARQPAVDVVVGPQSYHRLPDLLA---RSRERRVVD- 127
Query: 64 KKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ P D LP+ R L + GC C +C + RG S +V +++
Sbjct: 128 TEFPVEDKFDHLPRRRTLGASAFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVLAEAEK 187
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLRIGMTNP-PFI 175
+ GV+E+ L ++ AY D P L +V A++P G +R ++P F
Sbjct: 188 LADGGVREITLIGQNVNAYHGDGPDGAPAGLADLVRAVAKIP--GIARIRYTTSHPNDFD 245
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
++ AEV P + +LH+PVQSGSD +L+AMNR++T +R ++D + P + +
Sbjct: 246 DALIRAHAEV---PALMPYLHLPVQSGSDRILAAMNRKHTGDAYRRLIDRIRAARPDIAL 302
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRS 294
++D I GFPGETD DF +T+ L+++ F ++ RPGTPAA R +VP AV+ R
Sbjct: 303 SSDFIVGFPGETDADFAETLRLVRDVGFESAFSFKYSTRPGTPAADRTDQVPEAVMAARL 362
Query: 295 RELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
EL ++ ++ GRV + + + + G T + V + + +G
Sbjct: 363 AELQALLDSQRHAYQRAAAGRVFDVLVEKRGRHPGQVAGKTPHLLAVQFDAAPHHIGQVV 422
Query: 353 LVKITSVGRWSVFGEVI 369
V+IT G S+FGE++
Sbjct: 423 PVRITEAGSNSLFGELV 439
>gi|333924053|ref|YP_004497633.1| MiaB family RNA modification protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333749614|gb|AEF94721.1| RNA modification enzyme, MiaB family [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 441
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 179/359 (49%), Gaps = 20/359 (5%)
Query: 15 LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +VG + R+V++VE +K ++ +
Sbjct: 74 IAVTGCYAQTSPGEVLEIPGVDLVVGTRDRARIVKLVEGHVKNKGPVNAVEDIMQSECFE 133
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
L +P + K L I GC C YC +ARG + S E+++ ++ G +E
Sbjct: 134 ELPVP-TEQGKARAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVLKAATELVQQGYQE 192
Query: 128 VWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
+ L+ GAYG+D ++L L+ + A +P G LR+G P I L I
Sbjct: 193 IVLTGIHIGAYGQDFTAQNIDLAWLVERLAA-VP--GLRRLRLGSVEPHDINTAL--IEA 247
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
V HP + LH+P+QSG D +L+ M R Y ++ ++ + VPG+ I +D+I GFP
Sbjct: 248 VANHPNICRHLHIPLQSGDDQILAKMRRRYDTREYNRLIAEIYRKVPGVAITSDVIVGFP 307
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+ +F T+ + + KF ++H+ ++ PR GTPAA +VP ++RSR L + E
Sbjct: 308 GETEANFQNTLRTVAKAKFARIHVFKYSPRKGTPAAEFADQVPPEEKEERSRRLIELGEQ 367
Query: 304 FTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
G+ + + + + + L GHT Y++V+ P+ ++ G V I +V
Sbjct: 368 LAHEFARIQVGKDLEVLVEQPSHEYTPLWEGHTDTYLKVIFPADESVRGQIVKVHIDNV 426
>gi|443639927|ref|ZP_21123927.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21196]
gi|443406202|gb|ELS64786.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21196]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 187/382 (48%), Gaps = 19/382 (4%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L ++
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLG 366
Query: 306 PYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
+ V + E LVG+ Y++V +++G VKIT
Sbjct: 367 KLYASKFDQDVLEVIPEEQGDTESTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPL 426
Query: 364 VFGEVIKILNQVDDKIASNRRI 385
G+ IK+++ +K S+R +
Sbjct: 427 NEGQAIKVVDFATNK--SDREV 446
>gi|414160943|ref|ZP_11417206.1| MiaB/RimO family radical SAM methylthiotransferase [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410876622|gb|EKS24520.1| MiaB/RimO family radical SAM methylthiotransferase [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 190/383 (49%), Gaps = 29/383 (7%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ ++ GV +V G Q +++ +EE + ++
Sbjct: 67 KNPDAVVCVTGCYAQTSSAEIMDIPGVDVVVGTQDRTKLLGYIEEFKAERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S E +V + T++
Sbjct: 127 KNRTYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATTLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIG------MTNPPF 174
G KE+ L+ TG YG+D+ NL LL + + DG +RI +T+
Sbjct: 186 NSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLES---VDGLERIRISSIEASQLTDE-- 240
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
+++ +K +V+RH LHVP+QSGSD VL M R+Y+++ F + L + +PG+
Sbjct: 241 VIDVIKNSNKVVRH------LHVPLQSGSDTVLKRMRRKYSMAHFSERLMKLHDALPGLA 294
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 293
+ +D+I GFPGET+E+F +T + I ++ F ++H+ + R GTPAARM ++ +V +R
Sbjct: 295 VTSDVIVGFPGETEEEFQETYDFILDHHFSELHVFPYSARTGTPAARMDDQIDESVKNER 354
Query: 294 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 351
+L + + +V + E LVG+ Y++V +++G
Sbjct: 355 VHKLIELSNQLAKEYASHFDQKVLEVIPEEHGEKPGTLVGYADNYMKVEFEGDDSLIGEL 414
Query: 352 ALVKITSVGRWSVFGEVIKILNQ 374
VKIT G G V ++++
Sbjct: 415 VRVKITEAGYPLNKGYVTRVIDH 437
>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
Length = 446
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 180/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGYQEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + VL AM R YT +R ++ + L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRNLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 376 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEELRGTFVK 430
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 431 VKITEVRPFSLTG 443
>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
Length = 450
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 184/375 (49%), Gaps = 28/375 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V ++ D+
Sbjct: 80 LIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVFDGNQVVATEPIQI-VEDI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ V +NV GC CTYC RG S T E++ + + G KEV
Sbjct: 139 TKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAEMEALSRQGYKEVT 197
Query: 130 LSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ P L V ++P G +R ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFATSHPRYFTERLIR 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + VL AM R YT+ +R ++ + E +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTVEKYRRIIQMIREYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + S VK +R
Sbjct: 313 VGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAATWEGQLSEEVKADRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLGTSALV 354
L SV +A L + R+E + + + D ++G T+G + + G V
Sbjct: 373 LVSV-KAAERSLRYQDRIEEVLVEDQNPKDPSQVMGRTRGNRLTFFAGDIQELRGQVVKV 431
Query: 355 KITSVGRWSVFGEVI 369
KIT V +S+ GE +
Sbjct: 432 KITEVRAFSLTGESL 446
>gi|385784280|ref|YP_005760453.1| hypothetical protein SLUG_13350 [Staphylococcus lugdunensis
N920143]
gi|339894536|emb|CCB53817.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 185/381 (48%), Gaps = 25/381 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV +V G Q +++ ++E K + ++
Sbjct: 67 KNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDEFQKERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + +V + T++
Sbjct: 127 KNRTYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKKVVEQATTLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
KE+ L+ TG YG+D+ NL LL + DG +RI + + +
Sbjct: 186 NADYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLET---IDGLERIRISSIEASQLTDEVI 242
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++ E V+RH LH+P+QSGSD+VL M R+YT+ F + L + +P + +
Sbjct: 243 DVIEKSNKVVRH------LHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALPDLAVT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGETDE+F +T + I ++KF ++H+ + R GTPAARM ++ V +R
Sbjct: 297 SDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKNERVH 356
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSAL 353
+L ++ + + + + + H LVG+ Y++V +++G
Sbjct: 357 KLIALSDQLAKEYASKFEDDVLEVIPEEKGSFHGSLVGYADNYMKVQFDGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQ 374
VKI GE ++++
Sbjct: 417 VKIVHADYPLNKGEALRVVEH 437
>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-3-3Ab]
gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-3-3Ab]
Length = 453
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 19/376 (5%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K+ L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 70 KRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQVVATEP 129
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
++P D+ K RR+ V INV GC CTYC RG S +++ + V
Sbjct: 130 VEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAEIEDVA 187
Query: 122 ADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
G +EV L ++ AYGRD+ NL LL + + +G +R ++P + E L
Sbjct: 188 RAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHSV---EGIERIRFATSHPRYFTEEL 244
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
IA P V H+P Q+GSDAVL M R YT +R ++ + + +P I+ D
Sbjct: 245 --IATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQYMPEATISADA 302
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGET+ F +T+ L+++ F ++ + + PRPGTPAA +VP R + L
Sbjct: 303 IVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQVPEEEKSDRLQRLN 362
Query: 299 SVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALV 354
+ A + G+V+ + + + +G T+G V L G+ V
Sbjct: 363 RLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFFDGDPEQLQGSLVPV 422
Query: 355 KITSVGRWSVFGEVIK 370
+IT+ +S+ GE++K
Sbjct: 423 RITATRAFSLSGEIVK 438
>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 139 LGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEVWSKEGDV 198
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LP+ R+ K + I GC CTYC + RG S + ++ VR + A+G KE
Sbjct: 199 IENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKE 258
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 259 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 315
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 316 GGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASLTTDIIVGFPNET 375
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 376 DEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERLQRLNALVNEISA 435
Query: 307 --YLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+ + + + + L G+T V + +G VKIT WS
Sbjct: 436 KKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNIVKVKITQAKTWS 495
Query: 364 VFGEVI 369
+ GE++
Sbjct: 496 LDGEMV 501
>gi|29829021|ref|NP_823655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
avermitilis MA-4680]
gi|81720067|sp|Q82KC4.1|MIAB_STRAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29606127|dbj|BAC70190.1| putative methylase of isopentenylated A37 derivatives in tRNA
[Streptomyces avermitilis MA-4680]
Length = 508
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD + + V +V G I ++ ++E E ++
Sbjct: 81 KTKRPGMQIAVGGCLAQKDRDTIVTKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 140
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 141 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 200
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 201 GEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGQIDGLERVRFTSPHPRDFTDDV-- 257
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 258 IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQDRYLGIIEKVRAAIPHAAITTDIIV 317
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M+ ++P VV+ R L ++
Sbjct: 318 GFPGETEEDFEQTMHAVREARFTQAFTFQYSKRPGTPAATMENQIPKEVVQARYERLVAL 377
Query: 301 FEAFT 305
E +
Sbjct: 378 QEEIS 382
>gi|419855095|ref|ZP_14377863.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 44B]
gi|386416276|gb|EIJ30783.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 44B]
Length = 484
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 178/372 (47%), Gaps = 26/372 (6%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 107 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 164
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 165 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 224
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 225 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 279
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 280 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 339
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 340 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 399
Query: 306 P--YLGMEGRVERIWIT----EIAADGIHLVGHTKG--YVQVLVPSTGNM--LGTSALVK 355
EGR + IT + D + G K V + VP + +G V
Sbjct: 400 EENLATFEGRDVEVMITGKLGKKDTDTHRVTGREKTGVLVHIGVPEDEPVPEIGDFVTVT 459
Query: 356 ITSVGRWSVFGE 367
+T GR ++ +
Sbjct: 460 VTHAGRHNLLAD 471
>gi|302380512|ref|ZP_07268977.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
gi|302311455|gb|EFK93471.1| MiaB-like protein [Finegoldia magna ACS-171-V-Col3]
Length = 430
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 182/370 (49%), Gaps = 42/370 (11%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 60
I+K +S V+A GC Q S D ++ ++GV+++ G + +VE+ E L ++
Sbjct: 60 ISKIRSENSNAVIAVVGCYSQVSPDEIENIQGVNVILGTKYRKEIVELCE--LAKSSNKI 117
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 107
+++ + + +NK E L IN GC C+YC +ARG + S
Sbjct: 118 INK-------VENIGKNKEFEELTINTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRS 170
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLR 166
+ +V + + +G KE+ L+ +YG+D N I L ++ ++ D +R
Sbjct: 171 RNIRDIVLEAKRLADNGFKEIVLTGIHVASYGKDFD-NKDIGLIDVIEDIANIDKIKRIR 229
Query: 167 IGMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 222
+ P + L+ L ++ + H H+ +QSGSD++L +MNR+Y +
Sbjct: 230 LSSLEPRIVDKKFLDRLSQVEQFCDH------FHLSLQSGSDSILQSMNRKYDTHLYERT 283
Query: 223 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
++ + E P I TDII GFPGETDEDF QT+N + + KF ++H+ ++ R GT A++M
Sbjct: 284 INLIREYYPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKM 343
Query: 283 K-KVPSAVVKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
K ++P V K+RS+ L + +T M + ++ E D + G+T Y++V
Sbjct: 344 KNQIPGLVKKERSQRLIEKSKYYTDKFLDNMLNQPIKVLF-ESKNDNGFIKGYTTNYIRV 402
Query: 340 LVPSTGNMLG 349
N+
Sbjct: 403 KRQYNPNLFN 412
>gi|217967463|ref|YP_002352969.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
turgidum DSM 6724]
gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
6724]
Length = 441
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 20/306 (6%)
Query: 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 134
R NKF +PI GC CTYC + RG S + ++ + + GV EV L ++
Sbjct: 142 RENKFQAWIPIIYGCNNFCTYCIVPYLRGKEKSRDPQEIIKEIEHLANQGVVEVTLLGQN 201
Query: 135 TGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 193
+YG+D+G V+L LL I ++P G +R ++P + + L I V HP +
Sbjct: 202 VDSYGKDLGNVDLADLLVEI-HKIP--GIKRIRFLTSHPRDVSDKL--INVVATHPKICP 256
Query: 194 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 253
H+P+Q+GSD +L M R YT ++++ +++ + +P +TDII GFPGE +EDF
Sbjct: 257 HWHLPLQAGSDRILRRMGRGYTYNEYKALIEKIRAKIPRASFSTDIIVGFPGEEEEDFLA 316
Query: 254 TVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGM 310
T ++E KF V+++ + RPGTPAA VP KK EL ++ + L M
Sbjct: 317 TRRALEEIKFDTVNLAIYSKRPGTPAASYDDPVPYETKKKWFDELENLQRKIIYERNLSM 376
Query: 311 EGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
G+ E + A+G++ L G T+ Y V + ++G LV+I WS+
Sbjct: 377 IGKEEL-----VLAEGVNPKNPKELSGRTENYRLVFFEADRKLIGKFLLVRIIEARLWSL 431
Query: 365 FGEVIK 370
GE I+
Sbjct: 432 RGEAIR 437
>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
BL2]
Length = 498
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 175/360 (48%), Gaps = 26/360 (7%)
Query: 15 LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
+ V GC+ Q RD +K+ V +V G + + ++E E V +L +
Sbjct: 90 IAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQEAQVEILESLDVFPS 149
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R ++ + I+VGC +CT+C RG ++ V ++ADGV EV
Sbjct: 150 TLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAEVEALVADGVVEVT 209
Query: 130 LSSEDTGAYG---RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEV 185
L ++ +YG RD G LL A+ +G +R +P F + + +AE
Sbjct: 210 LLGQNVNSYGSEFRDKGA-FAKLLRAVGKV---EGIERVRFTSPHPASFSDDVIDAMAET 265
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P V LH+P+QSGSD++L +M R Y S F ++D++ E +P I TDII GFPG
Sbjct: 266 ---PAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDSVREKIPNAAITTDIIVGFPG 322
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV---- 300
ET+EDF T+++++ +F Q Q+ RPGTPAA M +VP +V++R LT++
Sbjct: 323 ETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQVPKHIVQERFERLTALQDEI 382
Query: 301 -FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKG--YVQVLVPSTGNMLGTSALVKIT 357
+E T +G E VE + T D L G + V V +P M V T
Sbjct: 383 SWEENTAQIGRE--VEVLVTTRPHDDSPRLTGRSADNRLVHVGIPDGEQMPRPGDFVTAT 440
>gi|326776162|ref|ZP_08235427.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces griseus XylebKG-1]
gi|326656495|gb|EGE41341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces griseus XylebKG-1]
Length = 506
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 82 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQIEIA 141
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 142 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 201
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 202 AEGVCEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV-- 258
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD +L AM R Y F +++ + +P I+TDII
Sbjct: 259 IAAMAETPNVMPQLHMPMQSGSDTILKAMRRSYRQERFLGIIEKVRAAMPEAAISTDIIV 318
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+++
Sbjct: 319 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLSAL 378
Query: 301 FEAFT 305
E +
Sbjct: 379 QEQIS 383
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 157 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 216
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 217 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 276
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 277 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 333
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 334 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 393
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 394 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 453
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 454 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 505
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 506 DAKTWSLNGELVE 518
>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP-- 306
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 307 ---YLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
Length = 510
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase protein MiaB [Caldicellulosiruptor
obsidiansis OB47]
gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
obsidiansis OB47]
Length = 471
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 146/315 (46%), Gaps = 32/315 (10%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+P RR + I GC CTYC + RG S E ++ + ++ +GVKEV L
Sbjct: 173 IPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGRERSRRPEEIIYEIEQLVQNGVKEVTL 232
Query: 131 SSEDTGAYGRDI--GVNLPILLNAI-----------VAELPPDGSTMLRIGMTNPPFILE 177
++ +YG+D+ G+ P LL + V P D S L + M + + E
Sbjct: 233 LGQNVNSYGKDLANGITFPKLLEKVNEIKGIERIRFVTSHPKDLSDELIVAMRDLDKVCE 292
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
H+ H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 293 HI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 296
DII GFPGETDEDF T+++ ++ +F + + R GTPA +M +VP + +R +
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQVPEDIKHQRFQR 396
Query: 297 LTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
L + E A M G+ I I + LVG T+ V V + V
Sbjct: 397 LVKLVEEIALKKNKQMLGKTYEILIDSRSKRNNLLVGRTRTNKVVNVKCPDEYMFKFVNV 456
Query: 355 KITSVGRWSVFGEVI 369
KI ++GEVI
Sbjct: 457 KILEAAEHWLYGEVI 471
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|257066511|ref|YP_003152767.1| MiaB family RNA modification protein [Anaerococcus prevotii DSM
20548]
gi|256798391|gb|ACV29046.1| RNA modification enzyme, MiaB family [Anaerococcus prevotii DSM
20548]
Length = 449
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 188/380 (49%), Gaps = 26/380 (6%)
Query: 7 KCKSAKKPLVVAGCVPQGS-------RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 59
K + +K + V+GC+ Q S +D KE++ I G + I+ +V+++ L+ +E R
Sbjct: 80 KKEHPEKIIAVSGCMMQTSTAREVIIKDHKEVD--IIFGTKNINSLVDLIFRYLETNE-R 136
Query: 60 LLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
++ D + N F + I GC C+YC +RG S +++ V
Sbjct: 137 VIDISTDDVKDDYVNYNTLNDFQAFVNIMTGCDNFCSYCIVPESRGREESRRPSAILAEV 196
Query: 118 RTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 175
++ +G KE+ L ++ +YG D + P LL I +G LR ++P +
Sbjct: 197 EHLVEEGYKEITLLGQNVNSYGNKADFDMTFPELLEKISQ---IEGLKRLRFTTSHPKDL 253
Query: 176 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235
+ L E+ + + C Y H+P+QSGS VL MNR+Y + L E +PG+ I
Sbjct: 254 SDELIEVIKNNDNICNY--FHLPLQSGSSKVLKDMNRKYDQEKYIERAKKLREEIPGIAI 311
Query: 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-S 294
+TDII G+P ET+EDF +T+ + +E +F ++ PRP T AA++ + +V+ R
Sbjct: 312 STDIIVGYPTETEEDFKETLKVCREIEFDSAFTFKYSPRPKTRAAKLTPIDDEIVQDRFD 371
Query: 295 RELTSVFEAFT----PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 350
R L +++ F Y+G VE + +E + L G T + V V ++ ++G
Sbjct: 372 RLLDTIYPIFNEKNKEYIG--KTVEVLLESESKNNPDILTGRTDTFKLVHVKASKKLIGE 429
Query: 351 SALVKITSVGRWSVFGEVIK 370
VKIT +++ GE+++
Sbjct: 430 IVKVKITDNTSFTISGELVE 449
>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G +E+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--- 305
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 306 --PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|384550403|ref|YP_005739655.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333252|gb|ADL23445.1| radical SAM domain protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ V +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEVKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGNTVGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|212715618|ref|ZP_03323746.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660985|gb|EEB21560.1| hypothetical protein BIFCAT_00517 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 484
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 180/370 (48%), Gaps = 22/370 (5%)
Query: 15 LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEET-LKGH-EVRLLHRKKLPAL 69
+ V GC+ Q R+ K+ V ++ G + I + +++++ ++GH +V++
Sbjct: 107 IAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQARIEGHAQVKVKEELNYFPS 166
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R +K + I+VGC CT+C RG ++ +R + +G KEV
Sbjct: 167 QLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVT 226
Query: 130 LSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ ++G IG LL A E+ +G +R +P + + IA +
Sbjct: 227 LLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--EGLERVRFTSPHPAAFTDDV--IAAMAE 281
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPGET
Sbjct: 282 TPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGET 341
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 306
+EDF +T+ +++E +F + PRPGTPAA M++VP VV+ R L ++ E T
Sbjct: 342 EEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPHDVVQDRFERLVALQERITEE 401
Query: 307 -YLGMEGRVERIWITEIA----ADGIHLVGHTKG--YVQVLVPSTGNM--LGTSALVKIT 357
EGR + +T + A + G K V V VP M +G IT
Sbjct: 402 NLKTFEGRDVEVMVTGASGKKDAATHRVTGREKTGVLVHVGVPEGEPMPQVGDFVTATIT 461
Query: 358 SVGRWSVFGE 367
GR ++ +
Sbjct: 462 HAGRHNLIAD 471
>gi|182435525|ref|YP_001823244.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|229891007|sp|B1VXU5.1|MIAB_STRGG RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|178464041|dbj|BAG18561.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 506
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 9/305 (2%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 82 KTKRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQIEIA 141
Query: 64 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ L A LP R + + + I+VGC CT+C RG ++ + ++
Sbjct: 142 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTGDILAEIEALV 201
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 202 AEGVCEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTDDV-- 258
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TDII
Sbjct: 259 IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPEAAISTDIIV 318
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGET+EDF QT++ ++E +F Q+ RPGTPAA M ++P VV++R L+++
Sbjct: 319 GFPGETEEDFEQTMHAVREARFANAFTFQYSKRPGTPAADMDGQIPKEVVQERYMRLSAL 378
Query: 301 FEAFT 305
E +
Sbjct: 379 QEQIS 383
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G +K+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKIKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|312622481|ref|YP_004024094.1| RNA modification enzyme, miab family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202948|gb|ADQ46275.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 434
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 198/387 (51%), Gaps = 37/387 (9%)
Query: 6 AKCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
AK S + +VV GC PQ ++++++E V I+ G + ++V+ V + L+ +
Sbjct: 63 AKKLSPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQKIVDYVRQYLED-------K 115
Query: 64 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 111
KK+ A++ +R F E+ + I GC C+YC +ARG + S +++
Sbjct: 116 KKIVAIN-EDYKREAFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLK 174
Query: 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171
S+ V ++ G KE ++ + +YG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVIRLVQKGYKEFVITGINISSYGKDLDGKVT-LIDVIERVNKIEGVKRIRLSSLE 233
Query: 172 PPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227
P + +E L ++ H LH+ +QSGSD +L MNR YT + ++++VD +
Sbjct: 234 PVIMNGEFIERLLSFDKLCHH------LHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIR 287
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 286
E + TDII GFPGET+EDFN T++ +++ F ++H+ +F P+ GT A M +V
Sbjct: 288 EKWDDVAFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKGTKAYEMPNQVD 347
Query: 287 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPST 344
S ++RS+ + V + + + G+ + I + + + G++ Y++ L+ +
Sbjct: 348 SKEKERRSKIMKEVAASLSYQFHSKFVGKTLEVLIEQDSDFDGYYEGYSGNYIRTLIRKS 407
Query: 345 GNML-GTSALVKITSVGRWSVFGEVIK 370
++ G VKIT R V GE+I+
Sbjct: 408 HMIVHGEIYKVKITQAYRQYVKGEIIQ 434
>gi|384201320|ref|YP_005587067.1| miab [Bifidobacterium longum subsp. longum KACC 91563]
gi|338754327|gb|AEI97316.1| miab [Bifidobacterium longum subsp. longum KACC 91563]
Length = 479
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 102 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 159
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 160 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 219
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 220 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 274
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 275 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 334
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 335 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 394
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 395 EENLATFEGRDVEVMIT 411
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
Length = 509
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDNHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP-- 306
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYAVNK 438
Query: 307 ---YLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|418430561|ref|ZP_13003472.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387718301|gb|EIK06285.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS3a]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|387771045|ref|ZP_10127217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
gi|386902964|gb|EIJ67785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 187/378 (49%), Gaps = 30/378 (7%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----EVRLLHRKKLPAL 69
V GCV +G + V I+ G Q + R+ ++ + G +V +K L
Sbjct: 80 VGGCVASQEGEHIRQRAPFVDIIFGPQTLHRLPAMINQIRGGQSSVVDVSFPEIEKFDCL 139
Query: 70 DLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 128
PK FV I+ GC CTYC + RG S ++ ++ + + A GV+EV
Sbjct: 140 PEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPLDDVLFEIAQLAAQGVREV 196
Query: 129 WLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
L ++ AY D G+ L +VA + DG LR +NP LE +I +V
Sbjct: 197 NLLGQNVNAYRGPTFDGGICSFAELLRLVAAI--DGIDRLRFTTSNP---LEFTDDIIDV 251
Query: 186 LRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L + P +QI++D I GFP
Sbjct: 252 YRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKLRAVRPNIQISSDFIVGFP 311
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 301
GET+E+F QT+NLI++ F + + RPGTPAA M P V ++ ++ +
Sbjct: 312 GETNEEFEQTMNLIQQVNFDMSYSFVYSARPGTPAADM---PDDVTEEEKKQRLYLLQQR 368
Query: 302 ---EAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+A M G +R+ + + D + L G T+ V T +M+G +KIT
Sbjct: 369 INNQALQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFVGTPDMIGKFVDIKIT 428
Query: 358 SVGRWSVFGEVIKILNQV 375
V S+ GEV++ Q+
Sbjct: 429 DVFTNSLRGEVVRTEEQM 446
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 157 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 216
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 217 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 276
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 277 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 333
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 334 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 393
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 394 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 453
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G +K+T
Sbjct: 454 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKIKVT 505
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 506 DAKTWSLNGELVE 518
>gi|395776016|ref|ZP_10456531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
acidiscabies 84-104]
Length = 495
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
+ A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 71 RKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 130
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ + +
Sbjct: 131 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIEAL 190
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+ +GV E+ L ++ AYG DIG + + A +G +R +P + +
Sbjct: 191 VGEGVTEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDDV- 248
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P V LH+P+QSGSD VL AM R Y + +++ + +P I+TDII
Sbjct: 249 -IAAMAETPNVMPQLHMPMQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPHAAISTDII 307
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M+ ++P VV+ R L +
Sbjct: 308 VGFPGETEEDFEQTLHAVREARFAQAFTFQYSKRPGTPAATMENQIPKEVVQARYERLVA 367
Query: 300 VFEAFT 305
+ E +
Sbjct: 368 LQEEIS 373
>gi|322691385|ref|YP_004220955.1| hypothetical protein BLLJ_1196 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456241|dbj|BAJ66863.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 480
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 103 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 160
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 161 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 220
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 221 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 275
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 276 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 335
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 336 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 395
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 396 EENLATFEGRDVEVMIT 412
>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
Length = 453
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 190/380 (50%), Gaps = 34/380 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G+ L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 79 LIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEEVHIFE-DI 137
Query: 72 PKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
+ RR+ V + I GC CTYC + RG S T E++ + + G KE+ L
Sbjct: 138 TQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQLARQGYKEITL 197
Query: 131 SSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-KE 181
++ AYGRD+ G +L L + + V ++P G +R ++P + E L K
Sbjct: 198 LGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSHPRYFTERLIKA 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
A++ P V H+P QSG + +L AM+R YT +R ++DT+ +P I+ D I
Sbjct: 256 CADL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRGYMPDASISADAIV 312
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET+ F T+ L+++ F V+ + + PRPGTPAA S VK +R L
Sbjct: 313 GFPGETETQFENTLKLVEDIGFDLVNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHL 372
Query: 298 TSV--FEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGN---MLGTS 351
++ E Y GR+E + + + D ++G T G L TGN + G
Sbjct: 373 VNIKAAERSQRYF---GRIEEVLVEAQNTKDTNQVMGRTGG--NRLTFFTGNINELKGQI 427
Query: 352 ALVKITSVGRWSVFGEVIKI 371
VKIT V +S+ GE +++
Sbjct: 428 VKVKITEVRAFSLTGEAVEV 447
>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
Length = 509
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G +E+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYREIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF---- 304
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYGVNK 438
Query: 305 -TPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>gi|23465968|ref|NP_696571.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Bifidobacterium longum NCC2705]
gi|317482468|ref|ZP_07941485.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
12_1_47BFAA]
gi|419848312|ref|ZP_14371424.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 1-6B]
gi|419850112|ref|ZP_14373128.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 35B]
gi|419853914|ref|ZP_14376711.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 2-2B]
gi|81753721|sp|Q8G4H4.1|MIAB_BIFLO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|23326682|gb|AAN25207.1| widely conserved hypothetical protein in upf0004 [Bifidobacterium
longum NCC2705]
gi|316916128|gb|EFV37533.1| MiaB family RNA modification enzyme [Bifidobacterium sp.
12_1_47BFAA]
gi|386406345|gb|EIJ21359.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 2-2B]
gi|386408166|gb|EIJ23097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 1-6B]
gi|386410167|gb|EIJ24969.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum 35B]
Length = 480
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 103 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 160
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 161 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 220
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 221 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 275
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 276 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 335
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 336 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 395
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 396 EENLATFEGRDVEVMIT 412
>gi|403383262|ref|ZP_10925319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kurthia sp.
JC30]
Length = 505
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 191/381 (50%), Gaps = 15/381 (3%)
Query: 7 KCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 59
K K+ L V GC+ Q ++ LK + V I+ G I ++ +++ E E V
Sbjct: 128 KTKNPDLLLGVCGCMSQEEAVVNKILKTYDQVDIIFGTHNIHKLPDILHEAYMSKEMVVD 187
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
+ ++ ++PKVR + I GC CTYC + RG S + ++ VR
Sbjct: 188 VWSKEGDVIENMPKVRNGGTKAWVNIMYGCDKFCTYCIVPYTRGKERSRLPQDIIQEVRE 247
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ A G +E+ L ++ AYG+D+ ++ L ++ EL +R ++P ++L
Sbjct: 248 LAAQGYQEITLLGQNVNAYGKDLDMDYG--LGHLMDELRKIDVPRIRFTTSHPRDFDDYL 305
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
E+ + + + +H+PVQSGS ++L M R+YT + +V + + +P + + TDI
Sbjct: 306 IEV--LAKKGNLVEHIHLPVQSGSSSMLKIMARKYTRERYLELVAKIKKAIPDVALTTDI 363
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 298
I GFP ET+E F +T++L +E F + PR GTPAA+M+ VP V K R + L
Sbjct: 364 IVGFPNETEEQFEETLSLYREVGFEMAFTYIYSPREGTPAAKMQDNVPMDVKKDRLQRLN 423
Query: 299 SVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+V ++ G EG++ + + E + L G+T+ V + ++G V+
Sbjct: 424 AVVSEYSAKSLEGYEGKIVEVLVDGESKRNKDVLAGYTRRNKLVNFRAPKEVIGKLVKVR 483
Query: 356 ITSVGRWSVFGEVIKILNQVD 376
+T V +S+ GE I ++ +V+
Sbjct: 484 VTDVKTYSLNGEFIGVVEKVE 504
>gi|189439139|ref|YP_001954220.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Bifidobacterium longum DJO10A]
gi|227547646|ref|ZP_03977695.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
longum subsp. longum ATCC 55813]
gi|239621252|ref|ZP_04664283.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|312132572|ref|YP_003999911.1| miab [Bifidobacterium longum subsp. longum BBMN68]
gi|229890432|sp|B3DQX6.1|MIAB_BIFLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|189427574|gb|ACD97722.1| 2-methylthioadenine synthetase [Bifidobacterium longum DJO10A]
gi|227211901|gb|EEI79797.1| possible tRNA 2-methylthioadenine synthetase [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|239515713|gb|EEQ55580.1| RNA modification enzyme [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|311773512|gb|ADQ03000.1| MiaB [Bifidobacterium longum subsp. longum BBMN68]
Length = 484
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 107 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 164
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 165 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 224
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 225 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 279
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 280 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 339
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 340 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 399
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 400 EENLATFEGRDVEVMIT 416
>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
Length = 454
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 192/385 (49%), Gaps = 30/385 (7%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K + A +VVAGCV Q G L+ + + +V G Q +R+ E++E+ G++V
Sbjct: 72 KQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVATEP 131
Query: 64 KKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
++ D+ K RR+ V +NV GC CTYC + RG S T E++ + +
Sbjct: 132 IQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMVELG 189
Query: 122 ADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPP 173
G KE+ L ++ AYGRD+ G +L L + + V ++P G LR ++P
Sbjct: 190 KQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATSHPR 247
Query: 174 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
+ E L + AE+ P V H+P QSG + VL M+R YT +R ++D + +L+P
Sbjct: 248 YFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIRQLMPD 304
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292
I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S VK
Sbjct: 305 ASISADAIVGFPGETEAQFENTLKLVADIGFDHLNTAAYSPRPGTPAALWDAQLSEEVKS 364
Query: 293 RSRELTSVFEAFTPYLGME---GRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML 348
+ + A T + GRVE + + + + ++G T+G L G+++
Sbjct: 365 DRLQRLNHLVATTAQARSQRYLGRVEEVLVEDQNPKNPQQVMGRTRG--NRLTFFDGDII 422
Query: 349 ---GTSALVKITSVGRWSVFGEVIK 370
G VKIT V +S+ GE I+
Sbjct: 423 QLKGQLVTVKITEVRAFSLTGEPIE 447
>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
Length = 446
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGYQEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDHQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 376 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEELRGTFVK 430
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 431 VKITEVRPFSLTG 443
>gi|417896838|ref|ZP_12540781.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21235]
gi|341840104|gb|EGS81624.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21235]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
Length = 446
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V + D+
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC CTYC RG S T ++ + + G +E+
Sbjct: 139 TKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMAQLGQQGYQEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G +L + + G LR ++P + E L +
Sbjct: 198 LLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKAC 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L P V H+P QSG + +L AM R YT +R ++ + +L+P I+ D I GF
Sbjct: 258 QEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPDAAISADAIVGF 315
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL-- 297
PGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK +R L
Sbjct: 316 PGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVA 375
Query: 298 TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN---MLGTSAL 353
T E YL GR+E I + ++ D ++G T+G L TGN + GT
Sbjct: 376 TKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTGNIEELRGTFVK 430
Query: 354 VKITSVGRWSVFG 366
VKIT V +S+ G
Sbjct: 431 VKITEVRPFSLTG 443
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 172/372 (46%), Gaps = 13/372 (3%)
Query: 7 KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLL 61
K K+ K +AGC+ Q D ++ + V G ++ + +V E H V +
Sbjct: 69 KEKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVT 128
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
K A +LP R KF +PI GC CTYC + RG S E +V VR +
Sbjct: 129 LADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAV 188
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
A+G EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 189 AEGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLID 246
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ +H C + +H+PVQ GS+ +L AMNR YT+ +R + E +P + TD+I
Sbjct: 247 TIKNGQHICEH--IHLPVQYGSNRILKAMNRVYTVEKYRERAQRVREALPNASLTTDLIV 304
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV 300
GFPGETDEDF + + ++E ++ + + R GTPAA M+ +V V R L
Sbjct: 305 GFPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSGTPAATMECQVSDDVKHARLNALMEE 364
Query: 301 FEAFTPYLGMEGRVERIWITEIAA---DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
A + + R + + A D G T+ VL P G VKIT
Sbjct: 365 QNAISRAINDRLRGATLEVMVEGASKNDPTVWSGRTRTNKIVLFPHGAECEGDFVQVKIT 424
Query: 358 SVGRWSVFGEVI 369
W + GE+I
Sbjct: 425 QPQTWVLKGEII 436
>gi|282916846|ref|ZP_06324604.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus D139]
gi|283770652|ref|ZP_06343544.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
gi|282319333|gb|EFB49685.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus D139]
gi|283460799|gb|EFC07889.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDREGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D + L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NDRYKGQ--------IVEVLVDGESKNNAEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
>gi|21283257|ref|NP_646345.1| hypothetical protein MW1528 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486411|ref|YP_043632.1| hypothetical protein SAS1514 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651969|ref|YP_186473.1| hypothetical protein SACOL1633 [Staphylococcus aureus subsp. aureus
COL]
gi|87160469|ref|YP_494231.1| hypothetical protein SAUSA300_1536 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195385|ref|YP_500189.1| hypothetical protein SAOUHSC_01679 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268060|ref|YP_001247003.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394128|ref|YP_001316803.1| RNA modification protein [Staphylococcus aureus subsp. aureus JH1]
gi|151221691|ref|YP_001332513.1| hypothetical protein NWMN_1479 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509804|ref|YP_001575463.1| hypothetical protein USA300HOU_1577 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253316051|ref|ZP_04839264.1| hypothetical protein SauraC_07882 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732229|ref|ZP_04866394.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733173|ref|ZP_04867338.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257793652|ref|ZP_05642631.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
gi|258411048|ref|ZP_05681328.1| RNA modification protein [Staphylococcus aureus A9763]
gi|258420148|ref|ZP_05683103.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
gi|258437408|ref|ZP_05689392.1| RNA modification protein [Staphylococcus aureus A9299]
gi|258443614|ref|ZP_05691953.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446821|ref|ZP_05694975.1| RNA modification protein [Staphylococcus aureus A6300]
gi|258448735|ref|ZP_05696847.1| RNA modification protein [Staphylococcus aureus A6224]
gi|258450595|ref|ZP_05698657.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
gi|258453552|ref|ZP_05701530.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
gi|262049149|ref|ZP_06022026.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
gi|262051236|ref|ZP_06023460.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
gi|269203204|ref|YP_003282473.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893077|ref|ZP_06301311.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
gi|282920125|ref|ZP_06327850.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
gi|282928209|ref|ZP_06335814.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
gi|284024635|ref|ZP_06379033.1| hypothetical protein Saura13_08590 [Staphylococcus aureus subsp.
aureus 132]
gi|294848607|ref|ZP_06789353.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
gi|295406699|ref|ZP_06816504.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
gi|296275802|ref|ZP_06858309.1| hypothetical protein SauraMR_05622 [Staphylococcus aureus subsp.
aureus MR1]
gi|297207705|ref|ZP_06924140.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245719|ref|ZP_06929584.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
gi|300911786|ref|ZP_07129229.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
gi|304380835|ref|ZP_07363495.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379014784|ref|YP_005291020.1| hypothetical protein SAVC_07130 [Staphylococcus aureus subsp.
aureus VC40]
gi|379021358|ref|YP_005298020.1| MiaB family protein [Staphylococcus aureus subsp. aureus M013]
gi|384547809|ref|YP_005737062.1| hypothetical protein SAOV_1576 [Staphylococcus aureus subsp. aureus
ED133]
gi|384864797|ref|YP_005750156.1| RNA modification enzyme, MiaB family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|385781861|ref|YP_005758032.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|386729277|ref|YP_006195660.1| tRNA 2-methylthioadenosine synthase-like protein [Staphylococcus
aureus subsp. aureus 71193]
gi|386831186|ref|YP_006237840.1| hypothetical protein SAEMRSA15_14960 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387143183|ref|YP_005731576.1| hypothetical protein SATW20_15720 [Staphylococcus aureus subsp.
aureus TW20]
gi|387150719|ref|YP_005742283.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Staphylococcus aureus 04-02981]
gi|387602917|ref|YP_005734438.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|387780668|ref|YP_005755466.1| hypothetical protein SARLGA251_14820 [Staphylococcus aureus subsp.
aureus LGA251]
gi|404478927|ref|YP_006710357.1| Adenine synthetase [Staphylococcus aureus 08BA02176]
gi|415686235|ref|ZP_11450372.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415692695|ref|ZP_11454615.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
aureus CGS03]
gi|416840045|ref|ZP_11903364.1| hypothetical protein SAO11_0770 [Staphylococcus aureus O11]
gi|416845854|ref|ZP_11906255.1| hypothetical protein SAO46_0897 [Staphylococcus aureus O46]
gi|417649310|ref|ZP_12299114.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21189]
gi|417651202|ref|ZP_12300965.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21172]
gi|417653428|ref|ZP_12303159.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21193]
gi|417797538|ref|ZP_12444734.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21305]
gi|417798971|ref|ZP_12446125.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21310]
gi|417801403|ref|ZP_12448495.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21318]
gi|417889929|ref|ZP_12534008.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21200]
gi|417892459|ref|ZP_12536508.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21201]
gi|417897965|ref|ZP_12541891.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21259]
gi|417901083|ref|ZP_12544960.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21266]
gi|417905387|ref|ZP_12549198.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21269]
gi|418276935|ref|ZP_12891689.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21178]
gi|418284040|ref|ZP_12896772.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21202]
gi|418284981|ref|ZP_12897681.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21209]
gi|418308650|ref|ZP_12920261.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21194]
gi|418310057|ref|ZP_12921607.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21331]
gi|418313158|ref|ZP_12924652.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21334]
gi|418316539|ref|ZP_12927977.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21340]
gi|418319418|ref|ZP_12930798.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21232]
gi|418321393|ref|ZP_12932739.1| MiaB-like protein [Staphylococcus aureus subsp. aureus VCU006]
gi|418424725|ref|ZP_12997839.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427719|ref|ZP_13000724.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS2]
gi|418433704|ref|ZP_13006296.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437199|ref|ZP_13008995.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418440099|ref|ZP_13011800.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418443117|ref|ZP_13014716.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446179|ref|ZP_13017653.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418449193|ref|ZP_13020579.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418452006|ref|ZP_13023340.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418455000|ref|ZP_13026259.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457878|ref|ZP_13029077.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418558922|ref|ZP_13123469.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21252]
gi|418567211|ref|ZP_13131576.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21272]
gi|418569536|ref|ZP_13133862.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21283]
gi|418574443|ref|ZP_13138612.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21333]
gi|418579501|ref|ZP_13143596.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|418599956|ref|ZP_13163430.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21343]
gi|418640369|ref|ZP_13202601.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-3]
gi|418641724|ref|ZP_13203929.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-24]
gi|418645207|ref|ZP_13207335.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-55]
gi|418648351|ref|ZP_13210395.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-88]
gi|418650676|ref|ZP_13212694.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-91]
gi|418652892|ref|ZP_13214855.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-99]
gi|418656003|ref|ZP_13217831.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-105]
gi|418659246|ref|ZP_13220934.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-111]
gi|418662068|ref|ZP_13223622.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-122]
gi|418875516|ref|ZP_13429772.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|418878494|ref|ZP_13432729.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|418881260|ref|ZP_13435477.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|418884108|ref|ZP_13438301.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|418886841|ref|ZP_13440989.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|418895339|ref|ZP_13449434.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|418903883|ref|ZP_13457924.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|418906521|ref|ZP_13460547.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|418912187|ref|ZP_13466168.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|418914678|ref|ZP_13468649.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920657|ref|ZP_13474589.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|418925836|ref|ZP_13479738.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|418928926|ref|ZP_13482812.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|418931881|ref|ZP_13485716.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|418951210|ref|ZP_13503327.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-160]
gi|418955653|ref|ZP_13507590.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-189]
gi|418978300|ref|ZP_13526101.1| tRNA 2-methylthioadenosine synthase-like protein [Staphylococcus
aureus subsp. aureus DR10]
gi|418988643|ref|ZP_13536315.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|418991504|ref|ZP_13539165.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|418994302|ref|ZP_13541937.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|419773137|ref|ZP_14299148.1| MiaB-like protein [Staphylococcus aureus subsp. aureus CO-23]
gi|419784670|ref|ZP_14310433.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-M]
gi|422742640|ref|ZP_16796643.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422746131|ref|ZP_16800064.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424768963|ref|ZP_18196200.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus CM05]
gi|440707286|ref|ZP_20887985.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21282]
gi|440735027|ref|ZP_20914638.1| hypothetical protein SASA_10360 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443637660|ref|ZP_21121732.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21236]
gi|448740597|ref|ZP_21722573.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus KT/314250]
gi|448743092|ref|ZP_21725006.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus KT/Y21]
gi|21204697|dbj|BAB95393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244854|emb|CAG43315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286155|gb|AAW38249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
COL]
gi|87126443|gb|ABD20957.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202943|gb|ABD30753.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741129|gb|ABQ49427.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus JH9]
gi|149946580|gb|ABR52516.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus JH1]
gi|150374491|dbj|BAF67751.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368613|gb|ABX29584.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724018|gb|EES92747.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728713|gb|EES97442.1| 2-methylthioadenine synthase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257787624|gb|EEV25964.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9781]
gi|257840198|gb|EEV64662.1| RNA modification protein [Staphylococcus aureus A9763]
gi|257843859|gb|EEV68253.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9719]
gi|257848613|gb|EEV72601.1| RNA modification protein [Staphylococcus aureus A9299]
gi|257851020|gb|EEV74963.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257854396|gb|EEV77345.1| RNA modification protein [Staphylococcus aureus A6300]
gi|257858013|gb|EEV80902.1| RNA modification protein [Staphylococcus aureus A6224]
gi|257861753|gb|EEV84552.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5948]
gi|257864283|gb|EEV87033.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A5937]
gi|259160873|gb|EEW45893.1| hypothetical protein SA930_1667 [Staphylococcus aureus 930918-3]
gi|259162818|gb|EEW47383.1| hypothetical protein SAD30_0306 [Staphylococcus aureus D30]
gi|262075494|gb|ACY11467.1| hypothetical protein SAAV_1568 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941066|emb|CBI49450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282590016|gb|EFB95098.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A10102]
gi|282594473|gb|EFB99458.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9765]
gi|282764395|gb|EFC04521.1| MiaB tRNA modifying enzyme [Staphylococcus aureus A8117]
gi|283470855|emb|CAQ50066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|285817258|gb|ADC37745.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Staphylococcus aureus 04-02981]
gi|294824633|gb|EFG41056.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A9754]
gi|294968446|gb|EFG44470.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8819]
gi|296887722|gb|EFH26620.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177370|gb|EFH36622.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus A8796]
gi|298694858|gb|ADI98080.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300886032|gb|EFK81234.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus TCH70]
gi|304340562|gb|EFM06496.1| Fe-S oxidoreductase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312829964|emb|CBX34806.1| RNA modification enzyme, MiaB family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129855|gb|EFT85845.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198728|gb|EFU29056.1| possible 2-methylthioadenine synthase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140539|gb|EFW32393.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144076|gb|EFW35845.1| MiaB-like tRNA modifying enzyme [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323440474|gb|EGA98186.1| hypothetical protein SAO11_0770 [Staphylococcus aureus O11]
gi|323443248|gb|EGB00866.1| hypothetical protein SAO46_0897 [Staphylococcus aureus O46]
gi|329727386|gb|EGG63842.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21172]
gi|329728416|gb|EGG64853.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21189]
gi|329733119|gb|EGG69456.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21193]
gi|334267030|gb|EGL85500.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21305]
gi|334275133|gb|EGL93434.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21310]
gi|334276852|gb|EGL95098.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21318]
gi|341843663|gb|EGS84885.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21269]
gi|341846242|gb|EGS87439.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21266]
gi|341849467|gb|EGS90610.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21259]
gi|341855622|gb|EGS96466.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21200]
gi|341857624|gb|EGS98436.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus 21201]
gi|344177770|emb|CCC88249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830667|gb|AEV78645.1| MiaB family protein [Staphylococcus aureus subsp. aureus M013]
gi|364522850|gb|AEW65600.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|365164904|gb|EHM56734.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21202]
gi|365171992|gb|EHM62737.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21209]
gi|365173918|gb|EHM64347.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21178]
gi|365225625|gb|EHM66868.1| MiaB-like protein [Staphylococcus aureus subsp. aureus VCU006]
gi|365236429|gb|EHM77318.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21334]
gi|365237514|gb|EHM78360.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21331]
gi|365238458|gb|EHM79293.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21194]
gi|365240537|gb|EHM81309.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21232]
gi|365241223|gb|EHM81978.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21340]
gi|371976272|gb|EHO93562.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21252]
gi|371979170|gb|EHO96405.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21333]
gi|371982915|gb|EHP00064.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21272]
gi|371985665|gb|EHP02726.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21283]
gi|374363481|gb|AEZ37586.1| hypothetical protein SAVC_07130 [Staphylococcus aureus subsp.
aureus VC40]
gi|374395545|gb|EHQ66808.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21343]
gi|375014933|gb|EHS08604.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-3]
gi|375018179|gb|EHS11759.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-24]
gi|375021060|gb|EHS14567.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375024040|gb|EHS17485.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-55]
gi|375026264|gb|EHS19647.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-88]
gi|375027962|gb|EHS21320.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-91]
gi|375034899|gb|EHS28042.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-105]
gi|375036244|gb|EHS29322.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-111]
gi|375037013|gb|EHS30067.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-122]
gi|375370739|gb|EHS74537.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-189]
gi|375373980|gb|EHS77629.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-160]
gi|377694616|gb|EHT18981.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|377695145|gb|EHT19509.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|377697528|gb|EHT21883.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|377713059|gb|EHT37272.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|377714443|gb|EHT38644.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|377717736|gb|EHT41911.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377722444|gb|EHT46570.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|377723626|gb|EHT47751.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|377725794|gb|EHT49907.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|377731003|gb|EHT55061.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|377738838|gb|EHT62847.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|377742898|gb|EHT66883.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|377744099|gb|EHT68077.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|377744905|gb|EHT68882.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|377757004|gb|EHT80900.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|377763426|gb|EHT87282.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|377764383|gb|EHT88236.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|377769588|gb|EHT93356.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|379993916|gb|EIA15361.1| tRNA 2-methylthioadenosine synthase-like protein [Staphylococcus
aureus subsp. aureus DR10]
gi|383363880|gb|EID41206.1| MiaB-like protein [Staphylococcus aureus subsp. aureus IS-M]
gi|383972961|gb|EID88982.1| MiaB-like protein [Staphylococcus aureus subsp. aureus CO-23]
gi|384230570|gb|AFH69817.1| tRNA 2-methylthioadenosine synthase-like protein [Staphylococcus
aureus subsp. aureus 71193]
gi|385196578|emb|CCG16207.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387718007|gb|EIK06002.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS2]
gi|387719504|gb|EIK07449.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724928|gb|EIK12559.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS4]
gi|387727187|gb|EIK14719.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730249|gb|EIK17656.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735317|gb|EIK22446.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387736793|gb|EIK23881.1| putative methylthiotransferase yqeV [Staphylococcus aureus subsp.
aureus VRS7]
gi|387736956|gb|EIK24042.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744887|gb|EIK31651.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745053|gb|EIK31815.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387746646|gb|EIK33375.1| RNA modification protein 2-alkenal reductase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348354|gb|EJU83346.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus subsp.
aureus CM05]
gi|404440416|gb|AFR73609.1| Adenine synthetase [Staphylococcus aureus 08BA02176]
gi|408423693|emb|CCJ11104.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus ST228]
gi|408425683|emb|CCJ13070.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus ST228]
gi|408427670|emb|CCJ15033.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus ST228]
gi|408429659|emb|CCJ26824.1| RNA modification enzyme, MiaB family [Staphylococcus aureus subsp.
aureus ST228]
gi|408431646|emb|CCJ18961.1| Putative uncharacterized protein MW1528 [Staphylococcus aureus
subsp. aureus ST228]
gi|408433640|emb|CCJ20925.1| Putative uncharacterized protein MW1528 [Staphylococcus aureus
subsp. aureus ST228]
gi|408435632|emb|CCJ22892.1| Putative uncharacterized protein MW1528 [Staphylococcus aureus
subsp. aureus ST228]
gi|408437616|emb|CCJ24859.1| Putative uncharacterized protein MW1528 [Staphylococcus aureus
subsp. aureus ST228]
gi|436431122|gb|ELP28476.1| hypothetical protein SASA_10360 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506042|gb|ELP41881.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21282]
gi|443405231|gb|ELS63839.1| MiaB-like protein [Staphylococcus aureus subsp. aureus 21236]
gi|445548564|gb|ELY16814.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus KT/314250]
gi|445563779|gb|ELY19936.1| tRNA methylthiotransferase YqeV [Staphylococcus aureus KT/Y21]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 15 LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLHRKKLP 67
+ V GC Q S ++ E+ GV +V G Q +++ ++E K + ++ +K
Sbjct: 73 ICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG + S E +V + ++ G KE
Sbjct: 133 ELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG+D+ NL LL + +G +RI + + + ++ E
Sbjct: 192 IVLTGIHTGGYGQDLKDYNLAQLLRDLET---INGLERIRISSIEASQLTDEVIDVLE-- 246
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
R V LH+P+QSGSD VL M R+YT+ F + L + +P + + +D+I GFPGE
Sbjct: 247 RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGE 306
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFT 305
T+ +F +T + I ++KF ++H+ + PR GTPAARM ++ + +R +L
Sbjct: 307 TEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKL-------- 358
Query: 306 PYLGMEGRVERIWITEIAADGIH------------LVGHTKGYVQVLVPSTGNMLGTSAL 353
+ + ++ +++ ++ D + LVG+ Y++V +++G
Sbjct: 359 --ITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQVDDKIASNRRI 385
VKIT G+ IK+++ +K S+R +
Sbjct: 417 VKITQANYPLNEGQAIKVVDFATNK--SDREV 446
>gi|374296083|ref|YP_005046274.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
gi|359825577|gb|AEV68350.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
Length = 475
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 181/366 (49%), Gaps = 16/366 (4%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
+ V GC+ Q ++ ++ V I G + + E++ + + + ++ L
Sbjct: 113 IAVCGCMMQQPEVVEHIKKVYRHVDLIFGTHNLYKFPELLYNAISSDQTVIEIMDSIGLI 172
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
A D+P R++ F + + GC C+YC + RG S +V V+ + GVKE
Sbjct: 173 AEDVPIQRKDGFKAWVTVMYGCNNFCSYCIVPYVRGRERSREFGKIVEEVKMLGQQGVKE 232
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ +YG+D+G + I ++ EL +G +R ++P + + L L
Sbjct: 233 ITLLGQNVNSYGKDLGGD--ISFARLLTELNKVEGIERIRFMTSHPKDLSDELIYAMRDL 290
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
C + LH+P Q+GS +L MNR+YT D+ +V+ + + +P + + TDII GFPGE
Sbjct: 291 DKLCEH--LHLPFQAGSTKILKEMNRKYTKEDYLRLVEKIKQNIPDISLTTDIIVGFPGE 348
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRSRELTSVFEAFT 305
T+EDF T+ ++++ +F Q + + R GTPAA+ + ++P V K+R + L + +
Sbjct: 349 TEEDFQDTLVVVEKVRFDQAYTFLYSKRTGTPAAKSLNQIPEEVKKERFQRLLELQNRIS 408
Query: 306 PYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ + +VE + + + + G T+G V ++G VKI +V W
Sbjct: 409 KEINDSYLNKKVEVLVEGKSKTNEKNYTGRTRGNKVVNFQGDDQLIGKLVTVKINTVKTW 468
Query: 363 SVFGEV 368
S+ G +
Sbjct: 469 SLEGNI 474
>gi|456351622|dbj|BAM86067.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 473
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 178/370 (48%), Gaps = 19/370 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH---EVRLLHRKKLPA 68
+ VAGCV Q G+ + V +V G Q + E++ +G E K
Sbjct: 87 IAVAGCVAQAEGAEIIARAPTVDVVVGPQSYHHLPELLARAGRGEPAIETEFPAEDKFSL 146
Query: 69 LDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P +R + + GC CT+C + RG S VE +V VR + +GV
Sbjct: 147 LAKPSRDAIRARGVSAFVTVQEGCDKFCTFCVVPYTRGSEMSRPVERIVDDVRQLTDNGV 206
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+E+ L ++ AY D P L + +AE+P G +R ++P + + L
Sbjct: 207 REITLIGQNVNAYHGDGPDGRPWTLGRLLYRIAEIP--GVARIRYSTSHPNDVDDSLIAA 264
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
LR V F+H+PVQSGSD +L MNR++ SD+ VVD + P + ++D I G
Sbjct: 265 HRDLR--AVMPFVHLPVQSGSDRILGLMNRKHGASDYLKVVDRFRAVRPDIAFSSDFIVG 322
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV-VKKRSRELTSVF 301
FPGET+EDF T+ LI + + + ++ PRPGTPAA ++++ SA + +R L ++
Sbjct: 323 FPGETEEDFRATLALIDQIGYAAAYSFKYSPRPGTPAADLQEMVSAPEMDERLERLQALI 382
Query: 302 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
++ G V + A LVG T V ++ +++G V+I S+
Sbjct: 383 DSQQSAFNKAAIGTVVDVLFERAARKPGQLVGRTAYLQPAHVMASHDIVGQVLPVRIDSL 442
Query: 360 GRWSVFGEVI 369
R+S+ GE++
Sbjct: 443 ERYSLLGELV 452
>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
Length = 443
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 191/373 (51%), Gaps = 17/373 (4%)
Query: 7 KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL--H 62
K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L H
Sbjct: 65 KIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFEDH 124
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 125 LDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVRELAK 183
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G +EV ++ AYG+D+ G +L LL +G + + P L
Sbjct: 184 QGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSNELI 240
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++DII
Sbjct: 241 EV--IARNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPDVAISSDII 298
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELT 298
GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R + L
Sbjct: 299 VGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKHYKDDVPHEEKVRRMQFLM 358
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++ + L G+ R+ + A +G+ + + + M+G A VKI
Sbjct: 359 NLQKRINRKLNERYRGKTVRVIVEAQAKNGLFYGRDIRNKI-IAFEGEEWMIGRFADVKI 417
Query: 357 TSVGRWSVFGEVI 369
+ ++G+V+
Sbjct: 418 EKITAGPLYGKVV 430
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 88 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 147
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 148 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 207
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 208 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 264
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 265 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 324
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 325 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 384
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G +K+T
Sbjct: 385 NDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKIKVT 436
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 437 DAKTWSLNGELVE 449
>gi|365134315|ref|ZP_09343194.1| MiaB-like tRNA modifying enzyme [Subdoligranulum sp. 4_3_54A2FAA]
gi|363614276|gb|EHL65773.1| MiaB-like tRNA modifying enzyme [Subdoligranulum sp. 4_3_54A2FAA]
Length = 430
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 166/353 (47%), Gaps = 15/353 (4%)
Query: 6 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLK--GHEVRLL 61
AK ++ V+ GC PQ L E I G RV++ V L+ G V +
Sbjct: 63 AKRRNPGAVTVLTGCFPQAFPGEALAVEEADIITGSGARRRVLDNVLRFLQEGGRIVDIA 122
Query: 62 -HRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
H K +LP R + I GC C YC ARG + S ES++G +
Sbjct: 123 PHEKSERFEELPMERLEGHTRAFMKIEDGCNRRCAYCVIPRARGSVRSRAEESILGELAA 182
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179
+ G EV S + +YGRD G +L ++ A++P G +R+G P + E +
Sbjct: 183 LAKGGYAEVVFSGINLSSYGRDTGTDLAEIVEK-AAQVP--GIRRIRLGSLEPDLMTEEM 239
Query: 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239
IA + P + H+ +QSG DA L M R Y + +R VV+ L PG TDI
Sbjct: 240 --IARMAHVPALCPQFHLSLQSGCDATLRRMRRIYDTAGYRAVVEKLRAAFPGASFTTDI 297
Query: 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 298
I GFPGET+ DF ++ ++E F +VH+ F R GTPA M ++ A +RS L
Sbjct: 298 IVGFPGETEADFEESAAFVREIGFLKVHVFSFSRRAGTPAYDMPDQIDEAEKARRSHRLQ 357
Query: 299 SVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 349
+ +A + GMEGR + + E + G+T+ YV VL+ + G+ G
Sbjct: 358 AEADAVRARVIAGMEGRPVEVLL-EKPVNNTLFTGYTREYVPVLLKAPGHRQG 409
>gi|148380907|ref|YP_001255448.1| MiaB family RNA modification protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931336|ref|YP_001385215.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
gi|153937595|ref|YP_001388684.1| RNA modification protein [Clostridium botulinum A str. Hall]
gi|148290391|emb|CAL84518.1| putative radical SAM superfamily protein [Clostridium botulinum A
str. ATCC 3502]
gi|152927380|gb|ABS32880.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
ATCC 19397]
gi|152933509|gb|ABS39008.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
Hall]
Length = 432
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 189/376 (50%), Gaps = 26/376 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LL 61
+++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 66 QNSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVL 125
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
K+ L++ + R +K L I GC C+YC ARG + S E ++ V +
Sbjct: 126 RNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVEKLS 184
Query: 122 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLK 180
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 185 KHGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIERIRIGSIDPTFFTEE-- 240
Query: 181 EIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I T
Sbjct: 241 ---EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITT 297
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
DII GFPGET+E+FN+T +++ K ++H+ +F PR GT A MK +V + ++RS +
Sbjct: 298 DIIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTRAEEMKNQVDGKIKEERSNK 357
Query: 297 LTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 352
+ ++ + M +E+ ++ E GI G+T Y+++ S+ ++ G
Sbjct: 358 IINLDKDLEKEF-MNKFIEKEMPVLYEQETKEKGI-FEGYTPNYIKIYSKSSKDITGEII 415
Query: 353 LVKITSVGRWSVFGEV 368
+ V + + GE+
Sbjct: 416 NTTLKEVSKDFIKGEI 431
>gi|291516737|emb|CBK70353.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bifidobacterium longum
subsp. longum F8]
Length = 484
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 18/317 (5%)
Query: 15 LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 69
+ V GC+ Q R K++ + + G + I+ + +++++ + ++ ++L
Sbjct: 107 IAVGGCMAQLDR--KKIADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQF 164
Query: 70 --DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R ++ + I+VGC CT+C RG ++ +R +ADG KE
Sbjct: 165 PSQLPAARASRISSWVAISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKE 224
Query: 128 VWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
V L ++ ++G IG LL A DG +R +P + + IA +
Sbjct: 225 VTLLGQNVNSFGYGIGDRYAFSKLLRACGT---IDGLERVRFTSPHPAAFTDDV--IAAM 279
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
P + LH P+QSGSD +L AM R Y + F ++ + +P QI+TDII GFPG
Sbjct: 280 AETPNIMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPG 339
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
ET+EDF QT++++++ +F + PRPGTPAA M+++P VV+ R L ++ E T
Sbjct: 340 ETEEDFQQTMDVVRQARFSSAFTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQIT 399
Query: 306 P--YLGMEGRVERIWIT 320
EGR + IT
Sbjct: 400 EENLATFEGRDVEVMIT 416
>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
Length = 386
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 14/304 (4%)
Query: 4 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKG 55
+I++ + A K V+A GC Q + E+EGV IV G + I V + +EE +
Sbjct: 59 MISRARKANKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQI 118
Query: 56 HEVR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
V+ + KK L++ + + +K L I GC C+YC +ARG + S E ++
Sbjct: 119 VNVKDVFTDKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVI 177
Query: 115 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 174
G ++ + G KE+ LS +YG D+ + L++ I DG +RIG P F
Sbjct: 178 GEIKRLAEHGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRF 236
Query: 175 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234
E + ++ C + H+ +QSG L MNR+YT +++ +V L E + +
Sbjct: 237 FDEDTISKIKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVS 294
Query: 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KR 293
I TD+I GFPGETDE+F +T + +KE + ++H+ ++ PR GT AA MK + VK KR
Sbjct: 295 ITTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKR 354
Query: 294 SREL 297
S EL
Sbjct: 355 SAEL 358
>gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Carboxydothermus hydrogenoformans Z-2901]
gi|123576193|sp|Q3ACA4.1|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus
hydrogenoformans Z-2901]
Length = 440
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 180/373 (48%), Gaps = 28/373 (7%)
Query: 5 IAKCKSAKKPLV--VAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHE 57
+ K K LV V GC+PQ + K L I G + + +++E + HE
Sbjct: 66 LKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEKHE 125
Query: 58 VRLLHR--------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 109
R+L + +P P VR +V I+ GC CTYC + RG S
Sbjct: 126 -RVLEVWQSEGQIVEGIPVKREPGVR--AWVTIM---YGCNNFCTYCIVPYVRGRERSRK 179
Query: 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 169
E ++ +R ++A+G +EV L ++ +YG+D+ P+ + DG +R
Sbjct: 180 KEDILQEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAELLADIEKIDGLWRVRFTT 238
Query: 170 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229
++P + + + E+ R C + LH+PVQ+GS+ +L AM+R YT + +V+ +
Sbjct: 239 SHPRDLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAK 296
Query: 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 288
+P + TDII GFPGET+EDF QT++L+++ ++ + R GTPAA MK +VP
Sbjct: 297 IPKVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVPEE 356
Query: 289 VVKKRSRELTSVFEAFTPYLGM--EGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTG 345
V +R +EL + + L EG + I + + D L G T+ V+
Sbjct: 357 VKSRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLVVFNGNE 416
Query: 346 NMLGTSALVKITS 358
+++G VKIT
Sbjct: 417 DLVGKLVKVKITE 429
>gi|27904873|ref|NP_777999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|46397184|sp|Q89AC2.1|MIAB_BUCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|27904271|gb|AAO27104.1| hypothetical protein bbp_392 [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 445
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 182/378 (48%), Gaps = 28/378 (7%)
Query: 7 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 63
K K+ + V GCV +G K V I+ G Q + + +++E K ++
Sbjct: 71 KQKNPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVKK-------NK 123
Query: 64 KKLPALDLPKVRRNKFVE---------ILPINVGCLGACTYCKTKHARGHLGSYTVESLV 114
K + +D P + F+E + I GC C++C + RGH S V+ ++
Sbjct: 124 KSVTNIDFPLTEKFNFIEYPRKPKVTAFVSIMEGCNKFCSFCIVPYTRGHEISRPVDDIL 183
Query: 115 GRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173
+ T+ + GVKE+ L ++ +Y G+ ++ N + DG +R +NP
Sbjct: 184 LEISTLSSRGVKEIHLLGQNVNSYKGKTFNGDICKFSNLLRLVASIDGIDRIRFTTSNP- 242
Query: 174 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232
E +I E+ P + SFLH+PVQSGS+ +L M R +T+ +++T+++ +++L P
Sbjct: 243 --FEFTDDIIEIYAEIPKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKILKLRPN 300
Query: 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 291
+QI++D I GFPGET DF QT+ LIK+ + + PRPGTPA+ ++ V +
Sbjct: 301 IQISSDFIIGFPGETLIDFEQTLQLIKDLNIDMSYSFIYSPRPGTPASELQDNVTLCEKQ 360
Query: 292 KRSRELTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML 348
KR L ++ T M G ++ + + + L G T+ V NM+
Sbjct: 361 KRLHILQTLIRNNTTMWNQKMLGSIQSVLVEGRSQKNPKELFGRTENNRIVNFKGNQNMI 420
Query: 349 GTSALVKITSVGRWSVFG 366
G +KIT + S+ G
Sbjct: 421 GEFINLKITKINPNSLRG 438
>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
gi|210159236|gb|EEA90207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Collinsella stercoris DSM
13279]
Length = 453
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 157/312 (50%), Gaps = 17/312 (5%)
Query: 10 SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG--HEVRLLHRK 64
S ++ + V GC+ Q G L L+ V ++ G I V +++ + VR+
Sbjct: 80 SGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADAFADGDRHVRVEEID 139
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
A ++P R + +PI GC C+YC + RG S +E +V V ++ G
Sbjct: 140 SGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMEEIVDEVTGLVRQG 199
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIA 183
V+ V L ++ +YGRD G + P ++ + G + ++P +L E + IA
Sbjct: 200 VRSVTLLGQNVNSYGRDHG-SAPRFAE-LLRRVGETGVERIYFTSSHPKDLLPETIDAIA 257
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
EV P V LH+ VQSGS +L MNR+YT + +VD + + +P + + TDII GF
Sbjct: 258 EV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVDRVRDRIPDIALTTDIIVGF 314
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSREL----- 297
PGET+EDF QTV L+ E KF Q + R GTPAA + P +V+++R L
Sbjct: 315 PGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEIDDPTPRSVIQQRFDRLVRHVE 374
Query: 298 TSVFEAFTPYLG 309
T+ F+ +LG
Sbjct: 375 TTAFDYNQRFLG 386
>gi|423348916|ref|ZP_17326572.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Scardovia
wiggsiae F0424]
gi|393703145|gb|EJD65346.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Scardovia
wiggsiae F0424]
Length = 489
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 7/237 (2%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP R ++ + I+VGC CT+C RG ++ ++ + G KEV L
Sbjct: 174 LPAARVSRISSWVAISVGCNNTCTFCIVPSVRGRERDRRPGDILDEIQRCVDSGAKEVTL 233
Query: 131 SSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188
++ +YG +G LL A D + R+ T+P IA +
Sbjct: 234 LGQNVNSYGYSMGDRYAFSRLLRAC-----GDIKGLERVRFTSPHPAAFTDDVIAAMAET 288
Query: 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 248
P V LH+P+QSGSD +L AM R Y S F +VD + E +P QI TDII GFPGET+
Sbjct: 289 PNVMHQLHMPLQSGSDRILRAMRRSYRTSKFMGIVDRVREAMPDAQITTDIIVGFPGETE 348
Query: 249 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305
EDF QT++++ +F + ++ PRPGTPAA M+++P+ V+++R L + E+ T
Sbjct: 349 EDFQQTLDILGRARFAGAYTFEYSPRPGTPAALMEQIPADVMRERYTRLHDMQESIT 405
>gi|303233705|ref|ZP_07320359.1| MiaB-like protein [Finegoldia magna BVS033A4]
gi|417926234|ref|ZP_12569640.1| MiaB-like protein [Finegoldia magna SY403409CC001050417]
gi|302495139|gb|EFL54891.1| MiaB-like protein [Finegoldia magna BVS033A4]
gi|341589874|gb|EGS33135.1| MiaB-like protein [Finegoldia magna SY403409CC001050417]
Length = 430
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 180/360 (50%), Gaps = 42/360 (11%)
Query: 5 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 60
I+K +S V+A GC Q S D ++ ++GV+++ G + +VE+ E L ++
Sbjct: 60 ISKIRSENSNAVIAVVGCYSQVSPDEIENIQGVNVILGTKYRKEIVELCE--LAKSSNKI 117
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 107
+++ + + +NK E L IN GC C+YC +ARG + S
Sbjct: 118 INK-------VENIGKNKEFEELTINTEHSMTRAYIKIQEGCSQFCSYCIIPYARGPIRS 170
Query: 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLR 166
+ +V + + +G KE+ L+ +YG+D N I L ++ ++ D +R
Sbjct: 171 RNIRDIVLEAKRLADNGFKEIVLTGIHVASYGKDFD-NKDIGLIDVIEDIANIDKIKRIR 229
Query: 167 IGMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 222
+ P + L+ L ++ + H H+ +QSGSD++L +MNR+Y +
Sbjct: 230 LSSLEPRIVDKKFLDRLSQVEQFCDH------FHLSLQSGSDSILQSMNRKYDTHLYERT 283
Query: 223 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282
++ + E P I TDII GFPGETDEDF QT+N + + KF ++H+ ++ R GT A++M
Sbjct: 284 INLIREYYPNAAITTDIIVGFPGETDEDFEQTLNFVDKIKFSKIHVFKYSNRKGTVASKM 343
Query: 283 K-KVPSAVVKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQV 339
K ++P V K+RS+ L + +T M + ++ E D + G+T Y++V
Sbjct: 344 KNQIPGLVKKERSQRLIEKSKYYTDKFLDNMLNQPIKVLF-ESKNDNGFIKGYTTNYIRV 402
>gi|12835700|dbj|BAB23330.1| unnamed protein product [Mus musculus]
Length = 230
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 96/142 (67%)
Query: 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 287
E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+
Sbjct: 2 EKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPA 61
Query: 288 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
V K+R+++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP
Sbjct: 62 HVKKQRTKDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAF 121
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
+G V I G+ + G+ +
Sbjct: 122 MGKMVEVDIYESGKHFLKGQPV 143
>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
petrophila RKU-1]
gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
RQ2]
gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
RKU-1]
gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
Length = 443
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 194/375 (51%), Gaps = 17/375 (4%)
Query: 7 KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL--H 62
K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L H
Sbjct: 65 KIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFEDH 124
Query: 63 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
+ +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 125 LDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVRELAK 183
Query: 123 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G +EV ++ AYG+D+ G +L LL +G + + P + L
Sbjct: 184 QGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDELI 240
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++DII
Sbjct: 241 EV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSDII 298
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELT 298
GFP ET+EDF +T++L+++ +F +++++ + PR GT A + K VP +R + L
Sbjct: 299 VGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQFLM 358
Query: 299 SVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
++ + L +G+ R+ + A +G+ + + + M+G A VKI
Sbjct: 359 NLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGRDIRNKI-IAFEGEEWMIGRFADVKI 417
Query: 357 TSVGRWSVFGEVIKI 371
+ ++G+V+ I
Sbjct: 418 EKITAGPLYGKVVWI 432
>gi|289550653|ref|YP_003471557.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
gi|289180185|gb|ADC87430.1| MiaB family protein [Staphylococcus lugdunensis HKU09-01]
Length = 448
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 185/381 (48%), Gaps = 25/381 (6%)
Query: 9 KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLL 61
K+ + V GC Q S ++ E+ GV +V G Q +++ ++E K + ++
Sbjct: 67 KNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDEFQKERQPINGVGNIM 126
Query: 62 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 121
+ LD+P ++ L I GC CT+C ARG + S + +V + T++
Sbjct: 127 KNRTYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKKVVEQATTLV 185
Query: 122 ADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
G KE+ L+ TG YG+D+ NL LL + DG +RI + + +
Sbjct: 186 NAGYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLET---IDGLERIRISSIEASQLTDEVI 242
Query: 181 EIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236
++ E V+RH LH+P+QSGSD+VL M R+YT+ F + L + + + +
Sbjct: 243 DVIEKSNKVVRH------LHIPLQSGSDSVLKRMRRKYTMEHFSERLSKLHKALSDLAVT 296
Query: 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 295
+D+I GFPGETDE+F +T + I ++KF ++H+ + R GTPAARM ++ V +R
Sbjct: 297 SDVIVGFPGETDEEFQETFDFIAKHKFSELHVFPYSSRIGTPAARMDNQIDEDVKNERVH 356
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSAL 353
+L ++ + + + + + H LVG+ Y++V +++G
Sbjct: 357 KLIALSDQLAKEYASKFEDDVLEVIPEEKGSFHGSLVGYADNYMKVQFDGDESLIGQIVK 416
Query: 354 VKITSVGRWSVFGEVIKILNQ 374
VKI GE ++++
Sbjct: 417 VKIVHADYPLNKGEALRVVEH 437
>gi|164686289|ref|ZP_02210319.1| hypothetical protein CLOBAR_02727 [Clostridium bartlettii DSM
16795]
gi|164601891|gb|EDQ95356.1| tRNA methylthiotransferase YqeV [Clostridium bartlettii DSM 16795]
Length = 432
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 176/362 (48%), Gaps = 13/362 (3%)
Query: 7 KCKSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR----L 60
K K+ + V GC Q S ++ ++ V++V G ++VE V++ +V +
Sbjct: 65 KKKNPDAIIAVVGCYSQVSPEEILSIDEVNLVMGTNDRKKIVEEVKKIDASRKVSTVDDI 124
Query: 61 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ K +++ K K + I GC C+YC +ARG + S +ES+V V +
Sbjct: 125 MKVKAFEEIEINKTN-GKTRAFMKIQDGCDRYCSYCIIPYARGRVRSRDLESIVKEVENL 183
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
++G KEV L+ +YG+DI + LL+ I +G +R+ P +
Sbjct: 184 ASNGYKEVVLTGIHVASYGKDIKDSDIKLLDVIKQINDIEGIERIRLSSVEPILFTDEFV 243
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
E + C + H+ +QSG D L M R YT +++ +VD L +P + I TD+I
Sbjct: 244 EAVSTMDKVCPH--YHLSLQSGCDETLKRMKRRYTTEEYKAIVDRLRAAIPNVSITTDVI 301
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+E+F++T +K+ + +H+ ++ PR GTPAA M+ +V + RS +L
Sbjct: 302 VGFPGETNEEFDKTYEFLKDIELTHMHVFKYSPRKGTPAATMENQVDPSTKHDRSEKLLQ 361
Query: 300 VFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ E G M + + + D + G T+ YV+V+V S ++ VKI
Sbjct: 362 LNEENFNKFGQKMLDKEFNVLFEQKVGDNKY-EGLTENYVKVIVESDNDISEQILKVKIK 420
Query: 358 SV 359
V
Sbjct: 421 DV 422
>gi|401679764|ref|ZP_10811688.1| MiaB-like protein [Veillonella sp. ACP1]
gi|400218891|gb|EJO49762.1| MiaB-like protein [Veillonella sp. ACP1]
Length = 431
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 174/353 (49%), Gaps = 21/353 (5%)
Query: 6 AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVE--ETLKG--HEVR 59
AK ++ ++V GC Q D + ++GV++V G ++VE+VE ET + + VR
Sbjct: 64 AKRQNQDAYVIVTGCYAQLDADAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINAVR 123
Query: 60 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 118
++ + L +K + I GC C +C + RG L S V+ +V +
Sbjct: 124 DIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNEAK 183
Query: 119 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178
++ G E+ L+ G YG ++ P L + + A L +R G + +
Sbjct: 184 RLVEHGFHEIVLTGIHLGNYGVELP-ERPTLADVVKALLEIPNLHRIRFGSIESVEVSDE 242
Query: 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238
L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I TD
Sbjct: 243 LIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSITTD 300
Query: 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 297
II GFP ETDEDF++T+N +KE F +H + R GTPAA M +VP AV K R L
Sbjct: 301 IIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREGTPAATMPNQVPEAVKKARVALL 360
Query: 298 TSVFE----AF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 345
+ E A+ T +G G + + E +G + G T Y+ V S G
Sbjct: 361 NDLSEKGLHAYATSRIGKPGEI----LIEKEENG-YYTGLTNEYIHGRVKSDG 408
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,223,690,919
Number of Sequences: 23463169
Number of extensions: 349823193
Number of successful extensions: 911030
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8096
Number of HSP's successfully gapped in prelim test: 737
Number of HSP's that attempted gapping in prelim test: 891581
Number of HSP's gapped (non-prelim): 9287
length of query: 516
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 369
effective length of database: 8,910,109,524
effective search space: 3287830414356
effective search space used: 3287830414356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)