BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010162
(516 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7K4W1|CDKAL_DROME Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila
melanogaster GN=CG6550 PE=2 SV=1
Length = 552
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/365 (56%), Positives = 264/365 (72%), Gaps = 10/365 (2%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL------ 66
K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL KK
Sbjct: 137 KHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRV 196
Query: 67 --PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A+G
Sbjct: 197 AGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERARQSFAEG 256
Query: 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+A
Sbjct: 257 CCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPYILEHLEEVAN 314
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICGFP
Sbjct: 315 VLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFP 374
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304
ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR++ LT +F ++
Sbjct: 375 TETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSY 434
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
PY G + + +TE++ D +H VGH K Y QVL+P N+LGT V+ITS ++S+
Sbjct: 435 EPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSM 494
Query: 365 FGEVI 369
GE++
Sbjct: 495 VGEIL 499
>sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
tropicalis GN=cdkal1 PE=2 SV=1
Length = 553
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 273/373 (73%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 119 IKKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 178
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 179 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRA 238
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 239 AQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 296
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 297 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIAT 356
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL
Sbjct: 357 DIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKEL 416
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F +++PY G + + +TE + D + V H + Y QVLVP +G VKI
Sbjct: 417 SQLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRFYEQVLVPKDPAFVGKMVEVKIF 476
Query: 358 SVGRWSVFGEVIK 370
G+ + G+ ++
Sbjct: 477 EAGKHFMKGQPVQ 489
>sp|Q5VV42|CDKAL_HUMAN Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo
sapiens GN=CDKAL1 PE=1 SV=1
Length = 579
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 182
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 183 KDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRA 242
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 243 KQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 300
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 301 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIAT 360
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L
Sbjct: 361 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDL 420
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 SRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIY 480
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 481 ESGKHFMKGQPV 492
>sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
laevis GN=cdkal1 PE=2 SV=1
Length = 556
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 273/373 (73%), Gaps = 9/373 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 119 IKKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 178
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 179 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRA 238
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 239 TQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 296
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 297 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIAT 356
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++V + V K+R++EL
Sbjct: 357 DIICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKEL 416
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ +F ++ PY G+ +++ +TE + D + V H + Y QVLVP + +G VKI
Sbjct: 417 SQLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRFYEQVLVPKDPDFMGKMVEVKIF 476
Query: 358 SVGRWSVFGEVIK 370
G+ + G+ ++
Sbjct: 477 EAGKHFMKGQPVQ 489
>sp|Q91WE6|CDKAL_MOUSE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus
musculus GN=Cdkal1 PE=2 SV=1
Length = 578
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +K
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK 181
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R
Sbjct: 182 KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERA 241
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILE
Sbjct: 242 KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILE 299
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IAT
Sbjct: 300 HLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIAT 359
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L
Sbjct: 360 DIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDL 419
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 420 SRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIY 479
Query: 358 SVGRWSVFGEVI 369
G+ + G+ +
Sbjct: 480 ESGKHFLKGQPV 491
>sp|Q291H5|CDKAL_DROPS Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila
pseudoobscura pseudoobscura GN=GA19679 PE=3 SV=1
Length = 553
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 268/367 (73%), Gaps = 9/367 (2%)
Query: 10 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 66
S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL KK+
Sbjct: 135 SNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLLQNKKVHGR 194
Query: 67 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 122
L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V R R A
Sbjct: 195 RVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVDRARQSFA 254
Query: 123 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182
+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+ILEHL+E+
Sbjct: 255 EGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPYILEHLEEV 312
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+ IATDIICG
Sbjct: 313 AKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICG 372
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302
FP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR++ LT +F
Sbjct: 373 FPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRTKRLTDLFY 432
Query: 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V+ITSV ++
Sbjct: 433 SYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSVSKF 492
Query: 363 SVFGEVI 369
S+ GE++
Sbjct: 493 SMVGEIL 499
>sp|Q6PG34|CDKAL_DANRE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Danio
rerio GN=cdkal1 PE=2 SV=1
Length = 547
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 266/369 (72%), Gaps = 9/369 (2%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I K + K +V+AGCVPQ + ++ +SI+GVQQIDRVVEVV+E +KGH VRLL +K
Sbjct: 118 IRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQK 177
Query: 65 KLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
K LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV RV
Sbjct: 178 KEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERV 237
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P +G+ MLR+GMTNPP+ILE
Sbjct: 238 RQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEEIP-EGA-MLRLGMTNPPYILE 295
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
HL+E++ +L+HP V+SFLHVP+QS SD+VL M REY +DF +VD L E VPG+ IAT
Sbjct: 296 HLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCCADFTHLVDYLKERVPGITIAT 355
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPGTPAA M+++P+ V K+R++EL
Sbjct: 356 DIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPGTPAALMQQLPAHVKKQRTKEL 415
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+++F ++ PY G +++ +TE + D + V H K Y QVLVP LG V++
Sbjct: 416 SALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEVY 475
Query: 358 SVGRWSVFG 366
G+ + G
Sbjct: 476 ECGKHYMKG 484
>sp|Q8MXQ7|CDKAL_CAEEL Threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Caenorhabditis elegans GN=Y92H12BL.1 PE=3 SV=2
Length = 425
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 254/358 (70%), Gaps = 5/358 (1%)
Query: 17 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 75
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 134
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 194
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 195 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 254
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 255 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 313
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 314 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ + I
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISKPASI 356
>sp|Q9UXX9|AMTAB_PYRAB Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB17290
PE=3 SV=1
Length = 425
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 211/365 (57%), Gaps = 17/365 (4%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++ L L
Sbjct: 69 KKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKRNLDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G KE+W
Sbjct: 129 DFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIW 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E +
Sbjct: 189 LSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIEAYQDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+Y FLH+PVQSG + +L M R YT+ +F +V + P + + TDII GFPGE DE
Sbjct: 246 KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LI+ + +V++S++ PRPGT AA+ K++P +VK+RSR L + +E
Sbjct: 306 AFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQISYEIN 365
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
Y+G +VE + E + V T Y V++P GN G + +I + +
Sbjct: 366 QKYIGK--KVEVLIHGEGKKGNVDAV--TMNYKHVILP-FGNS-GEFRIAEIKNATSTYL 419
Query: 365 FGEVI 369
GEV+
Sbjct: 420 LGEVM 424
>sp|O59545|AMTAB_PYRHO Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1875 PE=3 SV=2
Length = 425
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 13 KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPAL 69
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++ L L
Sbjct: 69 KKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKRNLDKL 128
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
D P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G KE+W
Sbjct: 129 DFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQGYKEIW 188
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
LS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ + +
Sbjct: 189 LSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELIDAYKDE 245
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFPGE++E
Sbjct: 246 KVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFPGESEE 305
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAF 304
F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L + +E
Sbjct: 306 AFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQISYEIN 365
Query: 305 TPYLGMEGRV 314
Y+G + +V
Sbjct: 366 RKYIGKKVKV 375
>sp|O26914|AMTAB_METTH Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_826 PE=3 SV=1
Length = 424
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 187/341 (54%), Gaps = 13/341 (3%)
Query: 12 KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
+K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 71 EKGLVVAGCMVE--IDPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERITGFTSDV 128
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +A G +E
Sbjct: 129 KVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGCRE 188
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L + E +
Sbjct: 189 IQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDGLVEAFK 245
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+ +P + IATDII G+P E
Sbjct: 246 SEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIVGYPTEE 305
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 307
EDF T +L++E K +H+S++ RP ++ + ++ +++RSR L + T
Sbjct: 306 REDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALEELKMRITEE 365
Query: 308 LG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+ G + I + E G +G T Y+ V V TG
Sbjct: 366 ENRRLVGSFQEILVVERGRKG-GFIGRTGSYIPV-VTETGE 404
>sp|O29021|AMTAB_ARCFU Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1247 PE=3 SV=2
Length = 424
Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 187/332 (56%), Gaps = 21/332 (6%)
Query: 9 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHRK 64
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 62 KREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDKA 120
Query: 65 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 124
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V + G
Sbjct: 121 EFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAG 178
Query: 125 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
+E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 179 YREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDELI 235
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII GF
Sbjct: 236 NAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGF 295
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 303
P ET+E F ++ LIKE + V+I+++ R GTPAAR++ +P + K+RSR+LT +
Sbjct: 296 PTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMRK 355
Query: 304 FTPYLGME------GRVERIWITEIAADGIHL 329
+G+E G+ R+ +T+ +G +L
Sbjct: 356 ----IGLENNKRFVGKKLRVLVTKEGKNGRNL 383
>sp|Q58277|AMTAB_METJA Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0867
PE=3 SV=1
Length = 427
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 195/372 (52%), Gaps = 23/372 (6%)
Query: 5 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 64
I + K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 71 INELKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRM 123
Query: 65 KLPALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 117
D+ K K + LPI GC+G C+YC K ARG L SY E +V +
Sbjct: 124 PYIEEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKA 183
Query: 118 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 177
+ +I G K + ++++DT YG DIG NL LLN + G ++R+GM +
Sbjct: 184 KELINKGAKCLLITAQDTACYGFDIGDNLANLLNELTQ---IKGEFIMRVGMMHAKNAEL 240
Query: 178 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
L E+ EV ++ V FLH+P+QSG D +L M R YT+ +F+ +V+ + + T
Sbjct: 241 ILDELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTT 300
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 297
DII GFPGET+E F T+ +++E K +H +++ R GT AA+MK++ + + K+RS L
Sbjct: 301 DIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEIL 360
Query: 298 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ + YL + + + + +G G+T + +V G +G VKIT
Sbjct: 361 DKLRRELS-YLNNKKYIGKAMKVLVLDEG---KGYTDNF--KVVKFEGGEVGEFRKVKIT 414
Query: 358 SVGRWSVFGEVI 369
+ + GE+I
Sbjct: 415 DAKTFGLKGELI 426
>sp|B2V930|MIAB_SULSY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=miaB
PE=3 SV=1
Length = 437
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 193/365 (52%), Gaps = 19/365 (5%)
Query: 17 VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VRLLHR--KKLPALD 70
V GC+ Q G ++ + IV G I + ++EE G++ + +L + LD
Sbjct: 77 VCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAIEILEEIDENENLLD 136
Query: 71 -LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
P VR NK+ + + GC CTYC RG S + ++ V+ ++ DGVKE+
Sbjct: 137 QFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILREVQYLVEDGVKEIH 196
Query: 130 LSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH-LKEIAEVLR 187
L ++ AYG+D G V LL A VAE+ DG +R +P + E +K +A++
Sbjct: 197 LIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRDLDEDTIKVMADL-- 251
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + LH+P+Q+GSD +L AM+R YT ++ ++ L + +P + ++TDII GFPGET
Sbjct: 252 -PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIALSTDIIVGFPGET 310
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKRSRELTSVFE--AF 304
ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + KR +L ++ + F
Sbjct: 311 YEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSKRLNDLINLQKDITF 370
Query: 305 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 364
L + ++ I + EI + LVG T+ V + LG VKI V R+S+
Sbjct: 371 KKNLEYQDKIVEILVEEINQEN-KLVGRTRTNKLVYAEGSPEYLGKLVNVKIEKVNRFSL 429
Query: 365 FGEVI 369
G +I
Sbjct: 430 EGSII 434
>sp|Q24X58|MIAB_DESHY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Desulfitobacterium hafniense (strain Y51) GN=miaB
PE=3 SV=1
Length = 447
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 184/371 (49%), Gaps = 29/371 (7%)
Query: 15 LVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 66
+ ++GC+ Q L+ L + + R++E EE K EV R+
Sbjct: 82 IAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVWEKPRETQ 141
Query: 67 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 126
++ L + K + I+ GC CTYC H RG S E ++ +R ++ G +
Sbjct: 142 ESVLLAA--KGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEIRALVETGCR 199
Query: 127 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184
EV L ++ +YG+D+ + LL + + DG +R ++P + + L E
Sbjct: 200 EVTLLGQNVNSYGQDLDRAYDFADLLKDVDS---IDGLWRVRFMTSHPKDLSDKLIETIA 256
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
H C + +H+P Q+GSD +L MNR+YT + + + + ++P + + TDII GFP
Sbjct: 257 AGTHLCEH--IHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKVIIPQVSLTTDIIVGFP 314
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 303
GET+EDF QT+ LI++ ++ Q + R GTPAA+M +++P + K+R ++L +V A
Sbjct: 315 GETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQLITVQNA 374
Query: 304 FTPYLGMEGRVERIWIT-EIAADG------IHLVGHTKGYVQVLVPSTGNMLGTSALVKI 356
+ + R E I T E+ +G L G T+GY V+ P ++GT V I
Sbjct: 375 QS----LAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVVFPGEAQLIGTLVQVLI 430
Query: 357 TSVGRWSVFGE 367
W++FGE
Sbjct: 431 QDANSWTLFGE 441
>sp|P54462|MTAB_BACSU Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
OS=Bacillus subtilis (strain 168) GN=mtaB PE=1 SV=1
Length = 451
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 198/388 (51%), Gaps = 24/388 (6%)
Query: 15 LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-----VRLLHRKKLP 67
+ V GC Q S ++ + GV IV G Q ++++ +++ + + ++ +
Sbjct: 73 ICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNIMKARVYE 132
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LD+P ++ L I GC CT+C ARG L S E ++ + + ++ G KE
Sbjct: 133 ELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKE 191
Query: 128 VWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L+ TG YG D+ N LL+ + + +G +RI I + E+ EVL
Sbjct: 192 IVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQITD---EVIEVL 246
Query: 187 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ + +D+I GFPG
Sbjct: 247 DRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPG 306
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R L ++ +
Sbjct: 307 ETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLIALSDQL 366
Query: 305 TPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
+ E + I A VG+T Y++V+ T +M+G VKI
Sbjct: 367 AKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVKVKILKA 426
Query: 360 GRWSVFGEVIKILNQVDDKIASNRRISS 387
G G+ +++ V+D+I + R+SS
Sbjct: 427 GYPYNEGQFVRV---VEDEITEHMRLSS 451
>sp|Q7NE65|MIAB_GLOVI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Gloeobacter violaceus (strain PCC 7421) GN=miaB PE=3
SV=1
Length = 441
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 23/365 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-D 70
LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +G +V + + + L D
Sbjct: 84 LVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAEGEQV--VATEPIEILED 141
Query: 71 LPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ K RR+ V I GC CTYC RG S T E++ + + A G KEV
Sbjct: 142 ITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEAIKAEICELGASGYKEVT 201
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYGRDIG NL LL + P G LR ++P + + L IA P
Sbjct: 202 LLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHPRYFSDEL--IATCAELP 256
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V H+P QSG + VL M R YT +R +++ + ++P I+ D+I GFPGET+
Sbjct: 257 KVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPDAAISADLIVGFPGETEA 316
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS------VFEA 303
F ++ L+ E +F ++ + + PRPGTPAAR VK+ + T+ FE
Sbjct: 317 QFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQDRLQRTNRLVAQKAFER 376
Query: 304 FTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGR 361
YL GR E++ + E D +VG T+ V + G V+IT+
Sbjct: 377 SQRYL---GRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGELAKLRGQLVDVQITAARA 433
Query: 362 WSVFG 366
+S+ G
Sbjct: 434 FSLTG 438
>sp|B5YE40|MIAB_DICT6 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM
3960 / H-6-12) GN=miaB PE=3 SV=1
Length = 440
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 18/305 (5%)
Query: 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 134
R NKF +PI GC CTYC + RG S E ++ V + + GV EV L ++
Sbjct: 141 RENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIREVEYLASQGVVEVTLLGQN 200
Query: 135 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE-----VLRHP 189
+YG+D+G N +A+L + + RI F+ H +++++ V HP
Sbjct: 201 VDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLTSHPRDVSDKLIRVVATHP 251
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
V H+P+Q+GSD +L M R YT S+++ +++ + +P +TDII GFPGE +E
Sbjct: 252 KVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKIRAEIPKASFSTDIIVGFPGEEEE 311
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTP 306
DF T ++E KF V+++ + RPGTPAA + +P K+ EL ++ +
Sbjct: 312 DFLATRRALEEIKFDTVNLAIYSKRPGTPAANYEDLIPYETKKRWFDELENLQRKIIYEK 371
Query: 307 YLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 365
L G+ E + E+ + L G T+ Y V + ++G LVKIT WS+
Sbjct: 372 NLSRVGKEEIVLAEEVNPKNPRELSGRTENYRLVFFEAEKELIGKFLLVKITEARLWSLK 431
Query: 366 GEVIK 370
GEVI+
Sbjct: 432 GEVIR 436
>sp|A8ERE9|MIAB_ARCB4 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Arcobacter butzleri (strain RM4018) GN=miaB PE=3 SV=1
Length = 436
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 171/342 (50%), Gaps = 16/342 (4%)
Query: 36 IVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 94
+VG + I ++ +VV+ +KG EV + + + + + NK+ + I+VGC CT
Sbjct: 102 VVGARNISKIKDVVD--VKGAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCT 157
Query: 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154
YC RG S E +V +VR + G EV L ++ +YGR +
Sbjct: 158 YCIVPSTRGEEISIPPEMIVEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKL 217
Query: 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 214
+ + RI T+P + + I E ++P + +H+P+QSGS +VL AM R Y
Sbjct: 218 LQDVSKIDGLERIRFTSPHPLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGY 277
Query: 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274
+ F + ELVP ++I TDII FPGET EDF T++++++ KF Q+ ++ PR
Sbjct: 278 SKEWFLNRASKMRELVPNLRITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPR 337
Query: 275 PGTPAARM--KKVPSAVVKKRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGI 327
PGT A + K++P + +R L + E YL + G I + + +G
Sbjct: 338 PGTEALNLKDKELPDEIGSQR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG- 393
Query: 328 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369
+ G+T Y+QV + +LG VKIT V R S+ GEV+
Sbjct: 394 EVCGYTDNYLQVFAKGSDELLGKFVNVKITDVTRTSLKGEVV 435
>sp|B7IFC4|MIAB_THEAB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermosipho africanus (strain TCF52B) GN=miaB PE=3
SV=1
Length = 429
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 200/386 (51%), Gaps = 30/386 (7%)
Query: 3 TLIAKCKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEV 58
+ I + + K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG +
Sbjct: 58 STIGELRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKA 114
Query: 59 RLLHRKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 116
+ KL +D + R +K + I GC CTYC + RG S ++ ++
Sbjct: 115 AIFD-DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILRE 173
Query: 117 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP 173
V+ + +GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P
Sbjct: 174 VKNLSLNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYP 228
Query: 174 --FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
F L+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP
Sbjct: 229 TDFSLDIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVP 285
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAV 289
I++DII GFP ET++DF QTV L++E KF +++++ + PR GT A + VP A+
Sbjct: 286 DASISSDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPRAI 345
Query: 290 VKKRSRELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 346
+R L ++ + L ++ VE I + E A G+ + + + +
Sbjct: 346 KTRRMAYLLNLQKEINKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKI-IAFEGDES 403
Query: 347 MLGTSALVKITSVGRWSVFGEVIKIL 372
++G LVKI ++G++IKI+
Sbjct: 404 LIGKKILVKIKKTTAGPLYGDIIKII 429
>sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=miaB
PE=3 SV=1
Length = 451
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 185/379 (48%), Gaps = 30/379 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---RLLHRKKLPA 68
LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V LH +
Sbjct: 80 LVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVATESLHIME--- 136
Query: 69 LDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
D+ K RR V + I GC C+YC + RG S T E++ G + + G KE
Sbjct: 137 -DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGFKE 195
Query: 128 VWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 181
V L ++ AYGRD+ G +L L + + +G LR ++P + E L +
Sbjct: 196 VTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPRYFTERLIQ 255
Query: 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241
+ L P V H+P QSG + +L AM R YT + +++ + +P I+ D+I
Sbjct: 256 ACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDAAISADVIV 313
Query: 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSREL 297
GFPGET+ F T+NLI+E F ++ + + PRPGTPAA S VK +R L
Sbjct: 314 GFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEVKGDRLQRLNHL 373
Query: 298 --TSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKG-YVQVLVPSTGNMLGTSAL 353
T E YL GRVE + + E ++G T+G + +LG +
Sbjct: 374 VSTQAMERSQRYL---GRVEEVLVEGENLKSPGQVMGRTRGNRLTFFQGEISELLGKTVP 430
Query: 354 VKITSVGRWSVFGEVIKIL 372
VKIT +S+ GE + ++
Sbjct: 431 VKITEARAFSLTGEALSLV 449
>sp|Q5L0E8|MIAB_GEOKA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus kaustophilus (strain HTA426) GN=miaB PE=3
SV=1
Length = 531
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q + LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ K + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA MK VP V K+R + L + + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERLKRLNDLVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEVI 369
+ GE++
Sbjct: 511 LTGELV 516
>sp|B7K993|MIAB_CYAP7 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Cyanothece sp. (strain PCC 7424) GN=miaB PE=3 SV=1
Length = 454
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 41/393 (10%)
Query: 9 KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
+ +KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 71 RKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVATE 130
Query: 63 RKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ D+ K RR V +NV GC CTYC + RG S T +++ + +
Sbjct: 131 PIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMVEL 188
Query: 121 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNP 172
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P
Sbjct: 189 GQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATSHP 246
Query: 173 PFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228
+ E L KE+ +V H H+P QSG + +L AM R YT +R ++D + E
Sbjct: 247 RYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKRGYTHERYRQIIDKIRE 300
Query: 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288
+P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA S
Sbjct: 301 YMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSE 360
Query: 289 VVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLV 341
VK +R L ++ E YL GR+E + + ++ D ++G T+G
Sbjct: 361 EVKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDVNPKDLTQVMGRTRGNRLTFF 417
Query: 342 PSTGNML-GTSALVKITSVGRWSVFGEVIKILN 373
N L G VKIT V +S+ GE +KIL+
Sbjct: 418 TGDINQLKGQLVEVKITDVRAFSLTGEPVKILS 450
>sp|O69963|MIAB_STRCO (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2)
/ M145) GN=miaB PE=3 SV=1
Length = 505
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 9 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH 62
K A +P + V GC+ Q RD +K V +V G I ++ ++E E ++
Sbjct: 81 KKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEI 140
Query: 63 RKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ L A LP R + + + I+VGC CT+C RG ++ V +
Sbjct: 141 AESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEAL 200
Query: 121 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180
+A+GV E+ L ++ AYG DIG + + A DG +R +P + +
Sbjct: 201 VAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPHPRDFTDDV- 258
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
IA + P LH+P+QSGSD VL AM R Y + +++ + +P I TDII
Sbjct: 259 -IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDII 317
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 299
GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV++R L +
Sbjct: 318 VGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERYERLVA 377
Query: 300 VFEAFT 305
+ E +
Sbjct: 378 LQEEIS 383
>sp|Q21C43|MIAB_RHOPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Rhodopseudomonas palustris (strain BisB18) GN=miaB
PE=3 SV=1
Length = 473
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 184/369 (49%), Gaps = 19/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH---EVRLLHRKKLPA 68
+ VAGCV Q G+ ++ V +V G Q + +++ E +G E K
Sbjct: 83 IAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARGGRALETEFPVDDKFGF 142
Query: 69 LDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P+ +R + + GC CT+C + RG S V+ +V VR + +GV
Sbjct: 143 LPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRPVDKIVEDVRRLADNGV 202
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLRIGMTNPPFILEHLKEI 182
+E+ L ++ AY D P L A++ A++P G LR ++P + + L +
Sbjct: 203 REITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLRYSTSHPRDVDQSLIDA 260
Query: 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242
L P + F+H+PVQSGSDA+L+AMNR+++ D+R +VD P + ++D I G
Sbjct: 261 HRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRFRSANPAIAFSSDFIVG 318
Query: 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVF 301
FPGETDEDF T+ L+ + + + ++ PRPGTPAA +++ V +AV+ +R L +
Sbjct: 319 FPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETVSAAVMDERLVRLQELI 378
Query: 302 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 359
++ G + A + +VG T V + +++G V+I S+
Sbjct: 379 DSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMAAPDIIGQVLPVRIDSL 438
Query: 360 GRWSVFGEV 368
R+S+ GE+
Sbjct: 439 ERYSLIGEL 447
>sp|A7GRA2|MIAB_BACCN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=miaB PE=3 SV=1
Length = 509
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 185/368 (50%), Gaps = 20/368 (5%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + K V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKATVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ VR + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEVRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D +L L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+YT + +V + + +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIPNVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL 308
F +T++L +E +F + PR GTPAA+MK +P V K+R + L + F+
Sbjct: 379 QFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDNIPMEVKKERLQRLNELVNEFS--- 435
Query: 309 GMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 362
+ + I E+ DG L G+T+ V + +++G VKIT W
Sbjct: 436 AKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKSVIGQLVKVKITEAKTW 495
Query: 363 SVFGEVIK 370
S+ GE+++
Sbjct: 496 SLNGELVE 503
>sp|Q9WZT7|MTAB_THEMA Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=mtaB PE=3 SV=1
Length = 434
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 192/369 (52%), Gaps = 31/369 (8%)
Query: 9 KSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 67
K+AK +++ GC Q S D K L ++G+ + +V+ + +L G + ++ P
Sbjct: 68 KNAK--IILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVSEPGRP 124
Query: 68 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD 123
+ KV+ ++ + + GC CTYC + ARG + S +E ++
Sbjct: 125 VYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMK 182
Query: 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + + + +
Sbjct: 183 GYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDEI--VK 237
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII GF
Sbjct: 238 AFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDIIVGF 297
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVVKKRSR 295
PGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+K++++
Sbjct: 298 PGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLKEKAK 357
Query: 296 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 355
+++ + +G E +V W G+ L G+ + YV+ GN +G V+
Sbjct: 358 DVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVKHEF--VGNRVGEFHSVR 409
Query: 356 ITSVGRWSV 364
+ S+ V
Sbjct: 410 VKSLSEEGV 418
>sp|Q3M8N9|MIAB_ANAVT (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=miaB PE=3 SV=1
Length = 454
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 187/381 (49%), Gaps = 28/381 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEAVHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ RR+ V +NV GC CTYC + RG S T E++ + + G KE+
Sbjct: 139 TQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEMEELGRQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L + + V ++P G +R ++P + E L K
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATSHPRYFTERLIK 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S K +R
Sbjct: 313 VGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEETKSDRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALV 354
L +V A M GR+E + + E D ++G T+G N L G V
Sbjct: 373 LVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTRGNRLTFFKGDINELKGQLVKV 431
Query: 355 KITSVGRWSVFGEVIKILNQV 375
KI V +S+ GE I+I V
Sbjct: 432 KINEVRAFSLTGEPIEIRQAV 452
>sp|O66638|MIAB_AQUAE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Aquifex
aeolicus (strain VF5) GN=miaB PE=3 SV=1
Length = 440
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 200/379 (52%), Gaps = 19/379 (5%)
Query: 7 KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE----VR 59
K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G++ +
Sbjct: 69 KEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGYKAIAILD 128
Query: 60 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 119
L + + + P R NK+ + I GC CTYC RG S + S++ V+
Sbjct: 129 ELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKR 188
Query: 120 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 178
++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +P + +
Sbjct: 189 LVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGHPRDLTDD 246
Query: 179 LKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237
+ E +A++ P V + LH+P Q+GS+ +L+ M+R YT ++ ++ L E V + ++T
Sbjct: 247 IIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKVKDIAMST 303
Query: 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 296
D+I GFP ET+EDF T++++K+ +F QV +F PRPGTPAA M+ ++P V +R R
Sbjct: 304 DVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDVKTERMRR 363
Query: 297 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 354
L + ++ + EG V+ + + E +G L+G T ++LG +
Sbjct: 364 LLELQKSILSEIAKKYEGTVQEVLVEE-EKNG-ELIGRTTTNKWASFKGDPSLLGKIVKI 421
Query: 355 KITSVGRWSVFGEVIKILN 373
K+ +S+ GE+++++
Sbjct: 422 KVIKSSPFSLEGELLEVIK 440
>sp|B1ZJR5|MIAB_METPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=miaB PE=3 SV=1
Length = 446
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 176/369 (47%), Gaps = 21/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD- 70
+VVAGCV Q G L V +V G Q R+ +++ ++ E R++ + P D
Sbjct: 80 IVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---RETRVVD-TEFPVEDK 135
Query: 71 ---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R L + GC C +C + RG S +V ++V R ++ GV+E
Sbjct: 136 FDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVEEARRLVEGGVRE 195
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ AY D P L ++ L G LR ++P + L IA
Sbjct: 196 ITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSHPNDFADDL--IAAHA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+P V +LH+PVQSGSD +L AMNR +T +R +++ + P + +++D I GFPGE
Sbjct: 254 GNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRTARPDIALSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE--- 302
+D DF +T+ L+ E F ++ PR GTPAA R VP AV +R L + +
Sbjct: 314 SDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPEAVKTERLAALQQLLDQQR 373
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
AF G V I + + + G T V + + +GT V+IT G
Sbjct: 374 HAFN--AAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPASTIGTLVPVRITRAGS 431
Query: 362 WSVFGEVIK 370
S+FGEV++
Sbjct: 432 NSLFGEVLE 440
>sp|B7GJM6|MIAB_ANOFW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=miaB PE=3 SV=1
Length = 527
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 182/367 (49%), Gaps = 14/367 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ +++E E V + ++
Sbjct: 158 LGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKEMVVEVWSKEGDV 217
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 218 IENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAAQGYKE 277
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 278 ITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 334
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+YT + +V + E +PG+ + TDII GFP ET
Sbjct: 335 GGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVALTTDIIVGFPNET 394
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + PR GTPAA+M VP V K+R + L ++ +
Sbjct: 395 DEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERLQRLNALVNEISA 454
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V + +G V+IT W+
Sbjct: 455 KKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAIGQLVNVRITEAKTWT 514
Query: 364 VFGEVIK 370
+ GE+++
Sbjct: 515 LNGEMVE 521
>sp|A4IMH7|MIAB_GEOTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=miaB PE=3 SV=2
Length = 523
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 181/365 (49%), Gaps = 14/365 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E V + ++
Sbjct: 154 LGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDV 213
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR+ + I GC CTYC + RG S E ++ VR + A G KE
Sbjct: 214 VENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKE 273
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 274 ITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDRLIEV--LAK 330
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +L M R+YT ++ +V + +P + + TDII GFP ET
Sbjct: 331 RGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVALTTDIIVGFPNET 390
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE--AF 304
DE F +T++L +E +F + + PR GTPAA+M VP V K+R + L ++ + A
Sbjct: 391 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERLQRLNALVQEIAA 450
Query: 305 TPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +++G V+IT W+
Sbjct: 451 KKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQLVNVRITQAKTWT 510
Query: 364 VFGEV 368
+ GE+
Sbjct: 511 LTGEL 515
>sp|B1XS06|MIAB_POLNS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Polynucleobacter necessarius subsp. necessarius
(strain STIR1) GN=miaB PE=3 SV=1
Length = 448
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 17/312 (5%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP R+ + + I GC C+YC + RG S + + ++ V + + GVKE+ L
Sbjct: 138 LPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRSFDDVLTEVAGLASKGVKEIVL 197
Query: 131 SSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185
++ AY +G + +L+ IV E+P G +R ++P + L ++
Sbjct: 198 LGQNVNAYLGKMGDRQEIADFALLIEYIV-EIP--GVERIRFTTSHPKEFTQRLIDV--Y 252
Query: 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245
+ P + S LH+PVQ GSDA+LSAM R YT +F++++ + + P + +++D I GFPG
Sbjct: 253 TKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRKMRAVRPDLTLSSDFIVGFPG 312
Query: 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF 304
ET+ DF + + +++E F F PRPGTPAA + P V KR + L ++ E+
Sbjct: 313 ETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDDTPYEVKLKRLQTLLALVESQ 372
Query: 305 TPYLG--MEGRVERIWITEIAADGIHLVGHTKG--YVQVLVPSTG--NMLGTSALVKITS 358
+ M G +ER+ I +A DGI+L G + + P+ N++G ++IT
Sbjct: 373 ANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFTAPAQNIENLIGQMVDIRITE 432
Query: 359 VGRWSVFGEVIK 370
V +++ G++++
Sbjct: 433 VLNYTLRGKLVE 444
>sp|Q07V68|MIAB_RHOP5 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Rhodopseudomonas palustris (strain BisA53) GN=miaB
PE=3 SV=1
Length = 465
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 181/369 (49%), Gaps = 15/369 (4%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK---GHEVRLLHRKKLPA 68
+ VAGCV Q G+ ++ V +V G Q + E++E+ + E K
Sbjct: 83 IAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPELLEKARRDGRALETEFPIEDKFGV 142
Query: 69 LDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 125
L P+ +R + + GC C++C + RG S V ++ V+ +I +GV
Sbjct: 143 LPPPRPDAIRARGVSAFVTVQEGCDKFCSFCVVPYTRGAEMSRPVAKILDDVKRLIDNGV 202
Query: 126 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 184
+E+ L ++ AY + + P L A++ L G LR ++P + + L IA
Sbjct: 203 REITLIGQNVNAYHGEGPDDRPWTLGALLRHLASVPGVARLRYSTSHPLDVDDEL--IAA 260
Query: 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244
P + F+H+PVQSGSDA+L+AMNR ++ D+R V+D + P + ++D I GFP
Sbjct: 261 HRELPGLMPFVHLPVQSGSDAILAAMNRRHSADDYRRVIDRFRQADPSIAFSSDFIVGFP 320
Query: 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA 303
GETD DF T+ L+ + + + ++ PRPGTPAA +++ V AV+ +R +L + ++
Sbjct: 321 GETDRDFEATLALVTQIGYAGAYSFKYSPRPGTPAAELQEMVAPAVMDQRLEQLQGLIDS 380
Query: 304 FTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
G + A +VG T V + +++G V I S+ R
Sbjct: 381 QQAAFNRASIGTTVDVLFERAARHPGQIVGRTAYLQPAHVMAADDIVGQVLPVTIHSLER 440
Query: 362 WSVFGEVIK 370
+S+ GE++K
Sbjct: 441 YSLIGELVK 449
>sp|B7HDP7|MIAB_BACC4 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain B4264) GN=miaB PE=3 SV=1
Length = 509
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>sp|B7JZ48|MIAB_CYAP8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Cyanothece sp. (strain PCC 8801) GN=miaB PE=3 SV=1
Length = 451
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 184/374 (49%), Gaps = 26/374 (6%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V + D+
Sbjct: 85 LIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEPIHIIE-DI 143
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
K RR+ + +NV GC C+YC + RG S T E+++ + + G KEV
Sbjct: 144 TKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEMELLGKQGYKEVT 202
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183
L ++ AYGRD+ G + L + + G +R ++P + E L
Sbjct: 203 LLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHPRYFTERLIAAC 262
Query: 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243
+ L C + H+P QSG + +L AM R YT +R ++D + + +P I+ D I GF
Sbjct: 263 QELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPDASISADAIVGF 320
Query: 244 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSVF- 301
PGET+E F T+ L+++ F Q++ + + PRPGTPAA S VK R + L +
Sbjct: 321 PGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVA 380
Query: 302 ----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNML-GTSALVK 355
E YL GR+E + + + D ++G T+G N L G VK
Sbjct: 381 QKAAERSQRYL---GRIEEVLVEDQNPKDSTQVMGRTRGNRLTFFKGDINQLKGRLIKVK 437
Query: 356 ITSVGRWSVFGEVI 369
IT V +S+ GE++
Sbjct: 438 ITEVRAFSLTGEIV 451
>sp|Q812Y0|MIAB_BACCR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=miaB
PE=3 SV=1
Length = 509
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VKIT
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>sp|Q8YXA3|MIAB_NOSS1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Nostoc
sp. (strain PCC 7120 / UTEX 2576) GN=miaB PE=3 SV=1
Length = 454
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 186/377 (49%), Gaps = 28/377 (7%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 71
LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V + D+
Sbjct: 80 LVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEAVHIME-DI 138
Query: 72 PKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+ RR+ V +NV GC CTYC + RG S T ++ + + G KE+
Sbjct: 139 TQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEMEELGRQGYKEIT 197
Query: 130 LSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFILEHL-K 180
L ++ AYGRD+ G +L + + V ++P G +R ++P + E L K
Sbjct: 198 LLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATSHPRYFTERLIK 255
Query: 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240
AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P I+ D I
Sbjct: 256 ACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRYMPDASISADAI 312
Query: 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----KRSRE 296
GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S VK +R
Sbjct: 313 VGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEEVKSDRLQRLNH 372
Query: 297 LTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLGTSALV 354
L +V A M GR+E + + E D ++G T G + + G +V
Sbjct: 373 LVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTGGNRLTFFKGDIHELKGQLVMV 431
Query: 355 KITSVGRWSVFGEVIKI 371
KI V +S+ GE I++
Sbjct: 432 KINEVRAFSLTGEPIEM 448
>sp|Q65JE5|MIAB_BACLD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=miaB PE=3 SV=1
Length = 509
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 178/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKEMVIEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + A+G KE
Sbjct: 200 IENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLAAEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + + +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L V +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNEVVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQLVNVKIHQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>sp|Q119H9|MIAB_TRIEI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Trichodesmium erythraeum (strain IMS101) GN=miaB PE=3
SV=1
Length = 451
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 30/383 (7%)
Query: 7 KCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 61
K K L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G++V
Sbjct: 72 KHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQVVAT 129
Query: 62 HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 120
+ D+ K RR+ K + I GC CTYC RG S T E++ + +
Sbjct: 130 EPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEMEEL 188
Query: 121 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNP 172
G +E+ L ++ AYGRD+ G N + + V ++P G +R ++P
Sbjct: 189 GRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFATSHP 246
Query: 173 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231
+ E L + AE+ P V H+P QSG + +L AM R YT +R ++D + EL+P
Sbjct: 247 RYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRELMP 303
Query: 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291
I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA + VK
Sbjct: 304 DASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLGEEVK 363
Query: 292 ----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTG 345
+R L V A M GR+E + + ++ + ++G T+G +
Sbjct: 364 SDRLQRLNHLVGVKAADRSQRYM-GRIEEVLVEDMNPKNAAQVMGRTRGNRLTFFEGDIA 422
Query: 346 NMLGTSALVKITSVGRWSVFGEV 368
+ G VKIT V +S+ GEV
Sbjct: 423 QLKGKLVKVKITEVRPFSLTGEV 445
>sp|A1A280|MIAB_BIFAA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083 / NCTC 11814 / E194a) GN=miaB PE=3 SV=1
Length = 480
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 14/315 (4%)
Query: 15 LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEET-LKGH-EVRLLHRKKLPAL 69
+ V GC+ Q R+ K+ V ++ G + I + +++++ ++GH +V++
Sbjct: 103 IAVGGCMAQLDREKIAKKAPWVDAVFGTKNIGSLPQLLDQARIEGHAQVKVQEELNYFPS 162
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
LP R +K + I+VGC CT+C RG ++ +R + +G KEV
Sbjct: 163 QLPTDRASKVSSWVAISVGCNNTCTFCIVPTTRGKEHDRRPGDILAEIRQCVDEGAKEVT 222
Query: 130 LSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
L ++ ++G IG LL A E+ DG +R +P + + IA +
Sbjct: 223 LLGQNVNSFGYGIGDRFAFSKLLRA-CGEI--DGLERVRFTSPHPAAFTDDV--IAAMAE 277
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P V LH P+QSGSD +L AM R Y + F ++ + E +P QI+TDII GFPGET
Sbjct: 278 TPNVMHQLHFPLQSGSDRILRAMRRSYRSAKFLDILRKIREAMPDAQISTDIIVGFPGET 337
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP- 306
+EDF +T+ +++E +F + PRPGTPAA M++VP VV+ R L ++ E T
Sbjct: 338 EEDFQETLRVVEEARFASAFTFIYSPRPGTPAAEMEQVPHDVVQDRFERLVALQERITEE 397
Query: 307 -YLGMEGRVERIWIT 320
EGR + +T
Sbjct: 398 NLKTFEGRDVEVMVT 412
>sp|B7ITM4|MIAB_BACC2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain G9842) GN=miaB PE=3 SV=1
Length = 509
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNTLVNTLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
+ Y G I E+ DG L G+T+ V ++ +++G VK+T
Sbjct: 439 NSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 EAKTWSLNGELVE 503
>sp|A4T007|MIAB_POLSQ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Polynucleobacter necessarius subsp. asymbioticus
(strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=miaB
PE=3 SV=1
Length = 448
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 15/311 (4%)
Query: 71 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 130
LP R+ + + I GC C+YC + RG S + ++ V + + GVKE+ L
Sbjct: 138 LPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTEVAGLASKGVKEIVL 197
Query: 131 SSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186
++ AY +G I LL +AE+P G +R ++P + L ++
Sbjct: 198 LGQNVNAYLGKMGDAEEIADFALLIEYIAEIP--GVERIRFTTSHPKEFTQRLIDV--YA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+ P + S LH+PVQ GSD++LSAM R YT ++++++ + + P + +++D I GFPGE
Sbjct: 254 KVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRKMRAVRPDLTLSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT 305
TD DF + + +++E F F PRPGTPAA + P V KR + L ++ E +
Sbjct: 314 TDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDDTPYEVKLKRLQTLLALIEGQS 373
Query: 306 PYLG--MEGRVERIWITEIAADGIHLVGHTK-GYVQVLVPSTGN---MLGTSALVKITSV 359
+ M G+ ER+ I +A DG++L G + V P N ++G ++IT V
Sbjct: 374 NQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFSPPDQNIDGLIGEMVDIRITEV 433
Query: 360 GRWSVFGEVIK 370
+++ GE+++
Sbjct: 434 LNYTLRGELVE 444
>sp|A9VYZ9|MIAB_METEP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Methylobacterium extorquens (strain PA1) GN=miaB PE=3
SV=1
Length = 446
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 176/369 (47%), Gaps = 21/369 (5%)
Query: 15 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD- 70
+VVAGCV Q G L V +V G Q R+ +++ ++ E R++ + PA D
Sbjct: 80 IVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---RETRVVD-TEFPAEDK 135
Query: 71 ---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
LP R L + GC C +C + RG S +V ++V R ++ GV+E
Sbjct: 136 FDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAAVVDEARRLVEGGVRE 195
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVL 186
+ L ++ AY + P L ++ L G LR ++P + L IA
Sbjct: 196 ITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLRYTTSHPNDFADDL--IAAHA 253
Query: 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246
+P V +LH+PVQSGSD +L AMNR +T +R +++ + P + +++D I GFPGE
Sbjct: 254 TNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARPDIALSSDFIVGFPGE 313
Query: 247 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFE--- 302
TD DF +T+ L+ + F ++ PR GTPAA R VP AV +R L + +
Sbjct: 314 TDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVKTERLAALQDLLDRQR 373
Query: 303 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 361
A+ G + I + + + G T V + + +GT V+IT G
Sbjct: 374 HAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPASTIGTVVPVRITRAGS 431
Query: 362 WSVFGEVIK 370
S+FGE ++
Sbjct: 432 NSLFGETLE 440
>sp|A9VS16|MIAB_BACWK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus weihenstephanensis (strain KBAB4) GN=miaB
PE=3 SV=1
Length = 509
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIKEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL ++ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDFDDHLIDV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF---- 304
F +T++L +E F + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERLQRLNTLVNEYGVNK 438
Query: 305 -TPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y+G I E+ +G L G+T+ V ++ +++G VKIT
Sbjct: 439 NKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVASKSLIGQLVKVKIT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE++K
Sbjct: 491 EAKTWSLNGELVK 503
>sp|A9BUQ1|MIAB_DELAS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=miaB PE=3 SV=1
Length = 442
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 178/366 (48%), Gaps = 17/366 (4%)
Query: 17 VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD-L 71
V GCV +G +K V +V G Q + R+ E++ H+ ++ + ++ D L
Sbjct: 78 VGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHKPQVDISFPEIEKFDHL 137
Query: 72 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 131
P R + I GC C+YC + RG S E ++ V + GVKEV L
Sbjct: 138 PPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLIEVAGLADQGVKEVTLL 197
Query: 132 SEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
++ AY +G I LL V+E+P G +R ++P L I R
Sbjct: 198 GQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSHPNEFTPRL--IEAYAR 253
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
P + S LH+PVQ GSD +L AM R YT ++++ + L + P M +++D I GFPGET
Sbjct: 254 LPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRPEMAMSSDFIVGFPGET 313
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
+EDF + + LI + +F F PRPGTPAA + P V +R +EL +V
Sbjct: 314 EEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVKLRRLQELQAVINNNIK 373
Query: 307 YLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
+ E G V+R+ + ++ DG L+G T+ V P ++G VKIT ++
Sbjct: 374 DISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNFPGNERLIGQMIDVKITEARTFT 433
Query: 364 VFGEVI 369
+ GEV+
Sbjct: 434 LRGEVV 439
>sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus subtilis (strain 168) GN=miaB PE=1 SV=1
Length = 509
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V I G I R+ E++ E E V + ++
Sbjct: 140 LGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEMVVEVWSKEGDV 199
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LPKVR K + I GC CTYC + RG S E ++ VR + ++G KE
Sbjct: 200 IENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKE 259
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P + L E+ + +
Sbjct: 260 ITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV--LAK 316
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 317 GGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNET 376
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+MK VP V K+R + L ++ +
Sbjct: 377 DEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQRLNALVNEISA 436
Query: 307 --YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+V + + E + L G+T+ V +G VKI WS
Sbjct: 437 KKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIVRVKIQQAKTWS 496
Query: 364 VFGEVI 369
+ GE++
Sbjct: 497 LDGEMV 502
>sp|A4XL48|MIAB_CALS8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=miaB PE=3 SV=1
Length = 471
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 183/382 (47%), Gaps = 25/382 (6%)
Query: 5 IAKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKG 55
+ + K K L+ V GC+PQ ++L V I G + + + +++ + T K
Sbjct: 98 LKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAITTKK 157
Query: 56 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 115
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 158 TVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIF 217
Query: 116 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELPPDGSTMLRIGMT 170
++ + A+GVKEV L ++ +YG+D+ +P +NAI +G +R +
Sbjct: 218 EIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNAI------EGIERIRFVTS 271
Query: 171 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230
+P + + L L C + +H+PVQSGS +L MNR YT D+ +V+ L E +
Sbjct: 272 HPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLKENI 329
Query: 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 289
P + I TDII GFPGET+EDF T++++++ +F + + R GT AA+M +VP V
Sbjct: 330 PDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQVPDEV 389
Query: 290 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 347
+R + L + E A M G+V I I + L G T+ V V +
Sbjct: 390 KHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKCSDEF 449
Query: 348 LGTSALVKITSVGRWSVFGEVI 369
+ VKI R ++GEVI
Sbjct: 450 MYKFVNVKILEASRHWLYGEVI 471
>sp|A8FDH0|MIAB_BACP2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus pumilus (strain SAFR-032) GN=miaB PE=3 SV=1
Length = 508
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 15 LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLP 67
L V GC+ Q +R LK+ V ++ G I R+ E++ E E + + ++
Sbjct: 139 LGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKEMVIEVWSKEGDV 198
Query: 68 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 127
+LP+ R+ K + I GC CTYC + RG S + ++ VR + A+G KE
Sbjct: 199 IENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQEVRRLAAEGYKE 258
Query: 128 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187
+ L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 259 ITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDFDDHLIEV--LAK 315
Query: 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 247
+ +H+PVQSGS +VL M R+Y + +V + E +P + TDII GFP ET
Sbjct: 316 GGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASLTTDIIVGFPNET 375
Query: 248 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 306
DE F +T++L +E +F + + PR GTPAA+M+ VP V K+R + L ++ +
Sbjct: 376 DEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERLQRLNALVNEISA 435
Query: 307 --YLGMEGRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 363
EG+ + + + + L G+T V + +G VKIT WS
Sbjct: 436 KKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNIVKVKITQAKTWS 495
Query: 364 VFGEVI 369
+ GE++
Sbjct: 496 LDGEMV 501
>sp|Q732V4|MIAB_BACC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ATCC 10987) GN=miaB PE=3 SV=1
Length = 509
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 30/373 (8%)
Query: 17 VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPAL 69
V GC+ Q ++ +++ + V +V G I R+ ++++ + E V + ++
Sbjct: 142 VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKETVVEVWSKEGDVIE 201
Query: 70 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 129
+LPKVRR + I GC CTYC + RG S E ++ +R + A+G KE+
Sbjct: 202 NLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRHLAANGYKEIT 261
Query: 130 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189
L ++ AYG+D ++ L ++ EL +R ++P +HL E+ + +
Sbjct: 262 LLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDHLIEV--LGKGG 318
Query: 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 249
+ +H+PVQSGS +L M R+Y+ + +V + E +P + TDII GFP ETDE
Sbjct: 319 NLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDE 378
Query: 250 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-----FEA 303
F +T++L +E F + PR GTPAA+MK VP V K+R + L ++ E
Sbjct: 379 QFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNKLAIEK 438
Query: 304 FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGTSALVKIT 357
Y G I E+ DG L G+T+ V + +++G VK+T
Sbjct: 439 NNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIGQLVKVKVT 490
Query: 358 SVGRWSVFGEVIK 370
WS+ GE+++
Sbjct: 491 DAKTWSLNGELVE 503
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,281,461
Number of Sequences: 539616
Number of extensions: 8515078
Number of successful extensions: 25363
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 22882
Number of HSP's gapped (non-prelim): 1142
length of query: 516
length of database: 191,569,459
effective HSP length: 122
effective length of query: 394
effective length of database: 125,736,307
effective search space: 49540104958
effective search space used: 49540104958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)