Query 010162
Match_columns 516
No_of_seqs 431 out of 2551
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 21:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0621 MiaB 2-methylthioadeni 100.0 1.7E-74 3.7E-79 606.3 40.2 361 3-369 61-436 (437)
2 PRK14327 (dimethylallyl)adenos 100.0 5E-63 1.1E-67 534.2 44.7 359 6-370 130-504 (509)
3 PRK14340 (dimethylallyl)adenos 100.0 3.5E-63 7.6E-68 530.5 43.1 361 6-371 70-442 (445)
4 PRK14339 (dimethylallyl)adenos 100.0 8.7E-63 1.9E-67 524.4 43.7 358 3-369 48-419 (420)
5 PRK14332 (dimethylallyl)adenos 100.0 1.3E-62 2.9E-67 526.3 44.2 353 11-369 81-448 (449)
6 PRK14335 (dimethylallyl)adenos 100.0 6.6E-62 1.4E-66 522.5 44.5 359 11-371 70-453 (455)
7 PRK14330 (dimethylallyl)adenos 100.0 3E-61 6.5E-66 515.1 44.5 362 3-372 58-433 (434)
8 PRK14331 (dimethylallyl)adenos 100.0 4.9E-61 1.1E-65 513.8 43.0 360 6-371 64-436 (437)
9 PRK14329 (dimethylallyl)adenos 100.0 9.6E-61 2.1E-65 514.8 44.4 360 6-370 87-466 (467)
10 PRK14337 (dimethylallyl)adenos 100.0 1.6E-60 3.4E-65 510.8 44.4 354 11-369 73-445 (446)
11 PRK14333 (dimethylallyl)adenos 100.0 2.1E-60 4.5E-65 510.3 43.1 353 11-370 77-448 (448)
12 PRK14336 (dimethylallyl)adenos 100.0 3.9E-60 8.5E-65 503.7 42.4 343 4-372 63-416 (418)
13 PRK14325 (dimethylallyl)adenos 100.0 9.4E-60 2E-64 505.1 43.7 362 5-371 66-441 (444)
14 PRK14326 (dimethylallyl)adenos 100.0 1E-59 2.2E-64 510.0 43.1 360 5-369 76-455 (502)
15 TIGR01574 miaB-methiolase tRNA 100.0 1.9E-59 4.2E-64 501.7 42.9 359 6-369 64-438 (438)
16 PRK14328 (dimethylallyl)adenos 100.0 2.5E-59 5.5E-64 500.9 43.5 361 5-370 64-439 (439)
17 TIGR01578 MiaB-like-B MiaB-lik 100.0 6.8E-59 1.5E-63 494.9 42.6 361 2-369 56-420 (420)
18 KOG4355 Predicted Fe-S oxidore 100.0 8.2E-60 1.8E-64 471.6 31.6 375 1-377 109-483 (547)
19 TIGR00089 RNA modification enz 100.0 1.2E-58 2.6E-63 494.6 40.9 358 2-366 56-429 (429)
20 TIGR01579 MiaB-like-C MiaB-lik 100.0 3.7E-58 8.1E-63 488.7 39.7 347 2-356 53-414 (414)
21 PRK14862 rimO ribosomal protei 100.0 4.8E-58 1E-62 490.7 40.0 353 3-369 65-440 (440)
22 TIGR01125 MiaB-like tRNA modif 100.0 2.2E-57 4.8E-62 484.9 41.8 358 2-366 56-430 (430)
23 PRK14338 (dimethylallyl)adenos 100.0 7.3E-57 1.6E-61 483.9 43.4 356 5-375 83-453 (459)
24 PRK14334 (dimethylallyl)adenos 100.0 1.4E-56 3E-61 479.8 43.3 365 2-376 57-434 (440)
25 KOG2492 CDK5 activator-binding 100.0 5.2E-45 1.1E-49 367.8 23.5 351 14-371 149-549 (552)
26 TIGR02026 BchE magnesium-proto 100.0 9.8E-34 2.1E-38 307.8 28.7 265 3-282 81-386 (497)
27 TIGR03471 HpnJ hopanoid biosyn 100.0 6.3E-33 1.4E-37 299.9 26.3 261 3-281 86-385 (472)
28 PRK00955 hypothetical protein; 100.0 9.8E-33 2.1E-37 300.6 25.3 197 79-283 292-528 (620)
29 PRK05481 lipoyl synthase; Prov 100.0 3.3E-31 7.1E-36 269.0 23.5 212 77-305 51-263 (289)
30 PRK01254 hypothetical protein; 100.0 1.4E-30 2.9E-35 282.0 20.3 197 79-281 372-608 (707)
31 PRK07094 biotin synthase; Prov 99.9 7.8E-26 1.7E-30 233.2 24.0 198 79-292 39-238 (323)
32 PRK05904 coproporphyrinogen II 99.9 4.2E-26 9.2E-31 237.9 21.6 238 79-338 7-252 (353)
33 COG1032 Fe-S oxidoreductase [E 99.9 2.3E-25 5E-30 239.7 26.2 272 13-294 103-416 (490)
34 PRK05628 coproporphyrinogen II 99.9 5.4E-25 1.2E-29 231.6 25.7 240 79-338 3-261 (375)
35 COG1031 Uncharacterized Fe-S o 99.9 4.6E-24 9.9E-29 219.6 27.6 287 78-370 182-507 (560)
36 TIGR00510 lipA lipoate synthas 99.9 1.7E-24 3.7E-29 220.3 23.0 196 76-283 60-258 (302)
37 PRK12928 lipoyl synthase; Prov 99.9 1.7E-24 3.7E-29 219.7 21.2 207 77-303 58-269 (290)
38 PRK08599 coproporphyrinogen II 99.9 2E-24 4.4E-29 227.4 22.1 193 80-283 3-201 (377)
39 PRK07379 coproporphyrinogen II 99.9 1E-23 2.2E-28 223.7 24.2 194 79-283 11-216 (400)
40 PRK05799 coproporphyrinogen II 99.9 6.5E-24 1.4E-28 223.3 22.5 192 79-282 4-199 (374)
41 PRK09058 coproporphyrinogen II 99.9 9.5E-24 2.1E-28 226.9 23.1 194 78-282 61-263 (449)
42 PRK08207 coproporphyrinogen II 99.9 1.6E-23 3.5E-28 226.4 24.3 247 77-337 162-431 (488)
43 PRK08446 coproporphyrinogen II 99.9 4.2E-23 9.1E-28 215.3 21.7 190 81-283 3-199 (350)
44 PRK09057 coproporphyrinogen II 99.9 7.6E-23 1.6E-27 215.7 23.6 213 79-302 5-229 (380)
45 PRK08898 coproporphyrinogen II 99.9 1.2E-22 2.6E-27 215.1 23.4 201 78-289 19-229 (394)
46 TIGR00539 hemN_rel putative ox 99.9 1.4E-22 3.1E-27 212.1 23.2 196 81-287 3-206 (360)
47 PRK06582 coproporphyrinogen II 99.9 1.7E-22 3.6E-27 213.5 23.6 195 78-283 11-211 (390)
48 PRK08208 coproporphyrinogen II 99.9 2.1E-22 4.6E-27 215.5 23.5 200 78-288 39-247 (430)
49 PRK06294 coproporphyrinogen II 99.9 2.8E-22 6E-27 210.7 22.5 189 79-282 7-203 (370)
50 TIGR01212 radical SAM protein, 99.9 1.7E-22 3.8E-27 206.6 20.4 189 83-283 22-227 (302)
51 PRK05660 HemN family oxidoredu 99.9 1.4E-21 3.1E-26 205.9 25.4 198 79-287 7-213 (378)
52 PRK06256 biotin synthase; Vali 99.9 1.3E-21 2.9E-26 202.8 21.9 194 86-295 65-262 (336)
53 TIGR01210 conserved hypothetic 99.9 2E-21 4.3E-26 199.6 20.4 193 78-283 14-222 (313)
54 TIGR00433 bioB biotin syntheta 99.9 1.1E-20 2.4E-25 192.2 25.3 199 80-294 29-232 (296)
55 smart00729 Elp3 Elongator prot 99.9 4.7E-21 1E-25 182.1 19.3 194 80-283 2-201 (216)
56 TIGR00538 hemN oxygen-independ 99.9 1.6E-20 3.4E-25 202.5 25.3 188 79-277 50-246 (455)
57 PRK08629 coproporphyrinogen II 99.9 1E-20 2.2E-25 202.4 22.4 189 78-280 52-245 (433)
58 PRK06245 cofG FO synthase subu 99.9 7.2E-21 1.6E-25 197.5 19.0 200 79-290 12-228 (336)
59 PLN02428 lipoic acid synthase 99.9 2.5E-20 5.4E-25 192.3 22.0 208 79-303 102-312 (349)
60 PRK13347 coproporphyrinogen II 99.9 4.5E-20 9.7E-25 198.9 24.7 189 78-277 50-247 (453)
61 PRK09249 coproporphyrinogen II 99.9 4.7E-20 1E-24 198.7 24.2 188 79-277 50-246 (453)
62 COG0635 HemN Coproporphyrinoge 99.9 4.5E-20 9.6E-25 196.2 23.3 242 78-339 34-290 (416)
63 TIGR00423 radical SAM domain p 99.8 2.1E-19 4.6E-24 184.5 19.9 195 81-290 7-222 (309)
64 TIGR03550 F420_cofG 7,8-dideme 99.8 2.1E-19 4.5E-24 185.6 18.3 195 80-289 5-223 (322)
65 TIGR01211 ELP3 histone acetylt 99.8 4.6E-19 1E-23 192.3 21.3 187 87-283 76-309 (522)
66 PRK06267 hypothetical protein; 99.8 2.1E-18 4.6E-23 179.9 22.5 192 80-293 28-226 (350)
67 COG1242 Predicted Fe-S oxidore 99.8 2.5E-18 5.3E-23 168.5 21.3 183 91-283 44-232 (312)
68 TIGR03551 F420_cofH 7,8-dideme 99.8 1.6E-18 3.5E-23 180.4 19.5 189 82-282 42-245 (343)
69 TIGR03699 mena_SCO4550 menaqui 99.8 3.6E-18 7.9E-23 177.5 18.4 193 82-289 44-254 (340)
70 cd01335 Radical_SAM Radical SA 99.8 1.1E-17 2.4E-22 156.7 19.4 185 84-283 2-190 (204)
71 TIGR03700 mena_SCO4494 putativ 99.8 5.4E-18 1.2E-22 177.0 18.6 196 81-291 50-265 (351)
72 PRK08445 hypothetical protein; 99.8 1.2E-17 2.7E-22 173.9 19.6 185 82-282 45-248 (348)
73 PLN02389 biotin synthase 99.8 1.3E-16 2.8E-21 167.7 23.6 199 80-294 83-289 (379)
74 PRK08508 biotin synthase; Prov 99.8 7.3E-17 1.6E-21 163.5 20.7 189 85-289 13-205 (279)
75 PF04055 Radical_SAM: Radical 99.7 3.5E-17 7.6E-22 149.2 14.7 162 83-258 1-166 (166)
76 PRK09240 thiH thiamine biosynt 99.7 9.8E-16 2.1E-20 161.2 20.9 199 80-296 75-284 (371)
77 PRK15108 biotin synthase; Prov 99.7 3.3E-15 7.1E-20 155.7 22.6 197 81-294 44-247 (345)
78 COG1243 ELP3 Histone acetyltra 99.7 2.4E-15 5.2E-20 156.3 20.8 214 80-300 68-324 (515)
79 TIGR02351 thiH thiazole biosyn 99.6 1.5E-14 3.2E-19 152.1 20.1 202 80-299 74-286 (366)
80 COG0502 BioB Biotin synthase a 99.6 4.8E-14 1E-18 144.1 19.2 193 80-289 51-249 (335)
81 PRK08444 hypothetical protein; 99.6 3.9E-14 8.3E-19 147.8 18.8 193 82-289 52-262 (353)
82 PRK07360 FO synthase subunit 2 99.6 3.3E-14 7.1E-19 149.7 18.5 188 82-283 63-268 (371)
83 PRK09613 thiH thiamine biosynt 99.6 2.8E-13 6E-18 145.7 22.0 199 79-290 84-297 (469)
84 PRK00164 moaA molybdenum cofac 99.5 1.3E-12 2.8E-17 135.4 24.9 183 80-280 18-204 (331)
85 PRK05926 hypothetical protein; 99.5 3.4E-13 7.5E-18 141.5 20.7 184 82-281 71-272 (370)
86 PRK13361 molybdenum cofactor b 99.5 4.3E-12 9.3E-17 131.6 24.5 193 80-290 15-211 (329)
87 PRK05927 hypothetical protein; 99.5 2.7E-13 5.9E-18 141.4 15.1 193 82-289 48-260 (350)
88 PTZ00413 lipoate synthase; Pro 99.5 2.1E-12 4.5E-17 133.5 21.3 180 81-272 151-333 (398)
89 TIGR02666 moaA molybdenum cofa 99.5 1.2E-11 2.7E-16 128.3 24.6 183 80-280 11-199 (334)
90 TIGR02668 moaA_archaeal probab 99.5 1.3E-11 2.7E-16 126.4 24.2 178 80-276 11-190 (302)
91 TIGR03822 AblA_like_2 lysine-2 99.5 8.4E-12 1.8E-16 129.0 22.7 189 77-289 86-282 (321)
92 PRK09234 fbiC FO synthase; Rev 99.4 5.3E-12 1.1E-16 144.3 20.9 185 81-280 528-730 (843)
93 PLN02951 Molybderin biosynthes 99.4 1.5E-10 3.2E-15 122.1 24.7 191 80-288 59-253 (373)
94 PRK09234 fbiC FO synthase; Rev 99.4 2E-11 4.4E-16 139.6 19.1 199 81-294 73-297 (843)
95 PRK14463 ribosomal RNA large s 99.3 7.5E-10 1.6E-14 115.6 26.6 183 77-277 101-293 (349)
96 TIGR02493 PFLA pyruvate format 99.3 2.8E-10 6.1E-15 112.1 21.8 173 82-274 18-200 (235)
97 PRK14455 ribosomal RNA large s 99.3 4.2E-10 9.2E-15 117.8 23.6 189 77-279 107-307 (356)
98 PRK05301 pyrroloquinoline quin 99.3 2E-09 4.4E-14 113.6 26.0 178 77-273 14-193 (378)
99 PRK14466 ribosomal RNA large s 99.2 2.9E-09 6.3E-14 110.4 24.7 196 77-292 101-305 (345)
100 TIGR01290 nifB nitrogenase cof 99.2 6.4E-09 1.4E-13 111.9 26.3 207 79-301 24-259 (442)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.2 6.3E-09 1.4E-13 109.0 25.0 176 78-272 6-183 (358)
102 PRK14456 ribosomal RNA large s 99.2 6.6E-09 1.4E-13 109.1 24.8 186 77-280 119-324 (368)
103 COG0320 LipA Lipoate synthase 99.2 1.7E-09 3.7E-14 106.6 18.5 211 78-304 69-279 (306)
104 TIGR00238 KamA family protein. 99.2 2.5E-09 5.3E-14 111.1 20.8 187 78-289 112-305 (331)
105 COG1856 Uncharacterized homolo 99.1 2.8E-09 6.2E-14 102.0 18.2 197 84-296 16-213 (275)
106 COG1060 ThiH Thiamine biosynth 99.1 1.6E-09 3.4E-14 113.7 18.0 192 80-284 60-269 (370)
107 COG2100 Predicted Fe-S oxidore 99.1 5.9E-08 1.3E-12 97.7 27.9 265 83-368 111-413 (414)
108 PRK11145 pflA pyruvate formate 99.1 8.5E-09 1.8E-13 102.4 21.5 178 81-278 22-209 (246)
109 TIGR02495 NrdG2 anaerobic ribo 99.1 8.1E-09 1.8E-13 98.5 20.4 164 78-262 15-183 (191)
110 PRK14457 ribosomal RNA large s 99.1 1.2E-08 2.5E-13 106.4 23.1 191 77-279 99-300 (345)
111 PRK14467 ribosomal RNA large s 99.1 2.5E-08 5.5E-13 104.0 24.8 191 77-279 97-299 (348)
112 PRK14461 ribosomal RNA large s 99.1 2.8E-08 6E-13 103.6 24.8 189 77-280 105-323 (371)
113 PRK14470 ribosomal RNA large s 99.1 2.4E-08 5.1E-13 103.8 24.1 185 77-276 95-288 (336)
114 PRK14453 chloramphenicol/florf 99.1 2.5E-08 5.5E-13 104.0 23.8 184 79-277 100-296 (347)
115 PRK14460 ribosomal RNA large s 99.1 3.1E-08 6.6E-13 103.8 24.4 186 78-279 101-302 (354)
116 COG2896 MoaA Molybdenum cofact 99.1 2.8E-08 6E-13 101.7 22.7 190 82-290 14-208 (322)
117 PRK14459 ribosomal RNA large s 99.1 3E-08 6.5E-13 104.0 23.0 187 77-279 119-329 (373)
118 PRK14468 ribosomal RNA large s 99.1 6.8E-08 1.5E-12 100.8 25.6 184 78-277 92-289 (343)
119 TIGR03470 HpnH hopanoid biosyn 99.0 5.4E-08 1.2E-12 100.6 23.8 178 78-278 27-207 (318)
120 PRK11194 ribosomal RNA large s 99.0 5.2E-08 1.1E-12 102.4 23.7 186 77-279 101-307 (372)
121 PRK14469 ribosomal RNA large s 99.0 4.5E-08 9.8E-13 102.2 23.1 184 77-276 99-293 (343)
122 PRK14462 ribosomal RNA large s 99.0 5.9E-08 1.3E-12 101.4 23.1 187 78-279 109-308 (356)
123 TIGR00048 radical SAM enzyme, 99.0 7.6E-08 1.6E-12 100.9 23.3 187 77-279 103-303 (355)
124 PRK14464 ribosomal RNA large s 98.9 5.6E-08 1.2E-12 101.0 19.1 186 79-280 96-288 (344)
125 PRK14454 ribosomal RNA large s 98.9 2E-07 4.3E-12 97.2 23.2 187 77-278 99-295 (342)
126 PRK14465 ribosomal RNA large s 98.9 3.3E-07 7.1E-12 95.3 24.5 190 78-289 104-306 (342)
127 COG1244 Predicted Fe-S oxidore 98.9 1.4E-07 3E-12 95.3 20.3 190 83-283 51-257 (358)
128 TIGR03821 AblA_like_1 lysine-2 98.9 1.6E-07 3.5E-12 97.2 21.2 185 80-291 97-290 (321)
129 COG0820 Predicted Fe-S-cluster 98.8 5.6E-07 1.2E-11 92.8 21.9 189 76-278 98-299 (349)
130 TIGR03820 lys_2_3_AblA lysine- 98.8 8.9E-07 1.9E-11 94.1 22.4 182 78-282 107-296 (417)
131 COG0731 Fe-S oxidoreductases [ 98.8 7.5E-07 1.6E-11 90.3 20.4 176 88-283 33-223 (296)
132 PRK13762 tRNA-modifying enzyme 98.8 5.7E-07 1.2E-11 93.2 20.0 171 85-278 64-266 (322)
133 KOG2672 Lipoate synthase [Coen 98.8 1.3E-07 2.8E-12 93.3 13.9 180 82-273 114-295 (360)
134 COG2516 Biotin synthase-relate 98.7 2.9E-07 6.2E-12 92.9 16.1 196 76-287 26-239 (339)
135 PF01938 TRAM: TRAM domain; I 98.6 3.7E-07 7.9E-12 71.2 8.9 61 308-369 1-61 (61)
136 KOG2900 Biotin synthase [Coenz 98.5 4.4E-07 9.5E-12 88.5 8.9 187 86-288 91-286 (380)
137 COG4277 Predicted DNA-binding 98.4 6.5E-06 1.4E-10 82.3 15.7 192 86-286 61-270 (404)
138 TIGR03278 methan_mark_10 putat 98.4 3.6E-05 7.8E-10 82.0 21.4 166 91-274 37-208 (404)
139 COG0535 Predicted Fe-S oxidore 98.4 0.00014 3E-09 75.0 25.1 180 78-275 18-199 (347)
140 PRK13745 anaerobic sulfatase-m 98.4 4.9E-05 1.1E-09 81.5 22.2 181 78-274 12-206 (412)
141 PRK13758 anaerobic sulfatase-m 98.4 0.0001 2.2E-09 77.6 23.4 175 81-270 6-193 (370)
142 COG1533 SplB DNA repair photol 98.3 7E-05 1.5E-09 76.7 18.9 186 82-275 32-225 (297)
143 TIGR02494 PFLE_PFLC glycyl-rad 98.3 7.4E-05 1.6E-09 76.3 19.1 153 107-279 105-264 (295)
144 KOG2535 RNA polymerase II elon 98.1 5.4E-05 1.2E-09 77.1 14.1 183 108-300 150-362 (554)
145 COG1509 KamA Lysine 2,3-aminom 98.1 0.00023 4.9E-09 73.6 18.6 184 78-282 110-300 (369)
146 TIGR03365 Bsubt_queE 7-cyano-7 98.1 0.00041 8.9E-09 69.0 19.4 149 78-261 22-175 (238)
147 COG1180 PflA Pyruvate-formate 98.0 0.00043 9.3E-09 69.8 17.2 173 80-272 36-214 (260)
148 COG0641 AslB Arylsulfatase reg 97.9 0.00086 1.9E-08 71.0 19.7 197 89-301 18-223 (378)
149 COG1625 Fe-S oxidoreductase, r 97.9 0.00046 9.9E-09 72.5 16.9 191 92-304 43-244 (414)
150 COG1313 PflX Uncharacterized F 97.5 0.0034 7.5E-08 63.1 14.9 176 87-283 126-306 (335)
151 TIGR03279 cyano_FeS_chp putati 97.2 0.012 2.7E-07 62.9 16.8 110 192-304 139-256 (433)
152 PRK10076 pyruvate formate lyas 97.2 0.023 4.9E-07 55.7 17.0 153 106-276 17-172 (213)
153 PF00919 UPF0004: Uncharacteri 96.9 0.00081 1.8E-08 57.7 3.5 36 3-38 57-98 (98)
154 COG2108 Uncharacterized conser 96.8 0.022 4.8E-07 58.3 13.0 161 82-271 31-201 (353)
155 TIGR02826 RNR_activ_nrdG3 anae 96.4 0.008 1.7E-07 55.4 6.6 67 82-155 18-86 (147)
156 COG0602 NrdG Organic radical a 96.3 0.011 2.5E-07 57.7 7.5 71 78-155 22-97 (212)
157 PF13394 Fer4_14: 4Fe-4S singl 96.1 0.021 4.7E-07 49.8 7.4 52 85-136 4-59 (119)
158 cd03174 DRE_TIM_metallolyase D 96.1 0.44 9.5E-06 47.4 17.8 149 106-269 14-166 (265)
159 PF13353 Fer4_12: 4Fe-4S singl 95.9 0.0064 1.4E-07 54.5 3.4 68 85-156 11-82 (139)
160 TIGR02491 NrdG anaerobic ribon 94.7 0.084 1.8E-06 48.9 6.7 65 87-156 23-93 (154)
161 PLN02746 hydroxymethylglutaryl 94.7 1.7 3.8E-05 45.7 16.9 145 106-269 63-217 (347)
162 COG5014 Predicted Fe-S oxidore 94.3 2.7 5.8E-05 39.8 15.2 156 86-261 48-212 (228)
163 PRK11121 nrdG anaerobic ribonu 94.1 0.24 5.3E-06 45.9 8.2 67 87-158 24-97 (154)
164 PRK05692 hydroxymethylglutaryl 93.5 3 6.5E-05 42.7 15.7 146 106-268 21-174 (287)
165 cd02068 radical_SAM_B12_BD B12 92.8 0.17 3.7E-06 44.9 4.8 53 3-56 57-114 (127)
166 cd07938 DRE_TIM_HMGL 3-hydroxy 92.4 6.2 0.00013 40.1 16.1 146 106-268 15-168 (274)
167 cd07948 DRE_TIM_HCS Saccharomy 91.5 13 0.00028 37.5 17.2 141 106-268 17-160 (262)
168 cd07939 DRE_TIM_NifV Streptomy 90.9 9.6 0.00021 38.2 15.6 140 106-268 15-158 (259)
169 PF02310 B12-binding: B12 bind 88.7 0.34 7.4E-06 42.1 2.7 47 2-49 69-121 (121)
170 TIGR03217 4OH_2_O_val_ald 4-hy 88.1 37 0.0008 35.5 18.1 139 106-269 19-163 (333)
171 PF00682 HMGL-like: HMGL-like 87.7 5 0.00011 39.4 10.6 145 107-269 10-157 (237)
172 PRK11858 aksA trans-homoaconit 87.1 23 0.00051 37.6 15.9 142 106-269 21-165 (378)
173 TIGR02660 nifV_homocitr homoci 85.8 26 0.00057 37.0 15.4 139 106-267 18-160 (365)
174 cd07941 DRE_TIM_LeuA3 Desulfob 85.6 43 0.00094 33.8 16.9 148 106-267 15-169 (273)
175 PRK08195 4-hyroxy-2-oxovalerat 84.8 55 0.0012 34.3 18.4 139 106-268 20-163 (337)
176 cd07944 DRE_TIM_HOA_like 4-hyd 84.7 47 0.001 33.5 18.5 142 106-269 15-158 (266)
177 COG3269 Predicted RNA-binding 84.5 6.6 0.00014 31.8 7.6 58 310-371 14-71 (73)
178 cd07945 DRE_TIM_CMS Leptospira 84.4 46 0.00099 33.9 15.8 147 106-269 14-167 (280)
179 TIGR02090 LEU1_arch isopropylm 83.9 46 0.001 35.2 16.2 141 106-269 17-161 (363)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.1 56 0.0012 33.1 17.2 144 107-269 17-169 (275)
181 PRK00915 2-isopropylmalate syn 82.8 47 0.001 36.9 16.3 145 106-268 21-168 (513)
182 KOG2876 Molybdenum cofactor bi 81.5 5.2 0.00011 40.4 7.2 183 83-287 15-205 (323)
183 cd07940 DRE_TIM_IPMS 2-isoprop 80.8 65 0.0014 32.3 16.0 143 106-268 15-162 (268)
184 PRK09432 metF 5,10-methylenete 78.9 83 0.0018 32.4 16.5 123 95-240 83-212 (296)
185 PRK14041 oxaloacetate decarbox 76.9 1.2E+02 0.0027 33.3 18.4 142 107-267 21-171 (467)
186 PRK09389 (R)-citramalate synth 75.5 1.1E+02 0.0024 33.8 16.3 140 106-268 19-162 (488)
187 PRK14040 oxaloacetate decarbox 74.7 1.6E+02 0.0034 33.5 17.4 141 107-266 23-172 (593)
188 TIGR00612 ispG_gcpE 1-hydroxy- 74.5 54 0.0012 34.4 12.5 137 106-261 29-190 (346)
189 PRK07535 methyltetrahydrofolat 73.8 28 0.00061 35.1 10.3 143 105-261 19-183 (261)
190 cd07943 DRE_TIM_HOA 4-hydroxy- 72.9 1.1E+02 0.0023 30.7 18.6 137 106-267 17-159 (263)
191 TIGR00973 leuA_bact 2-isopropy 72.4 1.2E+02 0.0027 33.5 15.7 145 106-267 18-164 (494)
192 PRK13168 rumA 23S rRNA m(5)U19 69.0 34 0.00074 37.1 10.3 58 315-376 16-73 (443)
193 cd00537 MTHFR Methylenetetrahy 68.3 1E+02 0.0022 31.0 13.0 129 95-246 59-198 (274)
194 COG0821 gcpE 1-hydroxy-2-methy 67.2 1.3E+02 0.0027 31.7 13.1 139 106-261 31-192 (361)
195 PRK12344 putative alpha-isopro 67.2 2.1E+02 0.0046 31.9 16.6 148 106-267 22-176 (524)
196 PRK00366 ispG 4-hydroxy-3-meth 66.7 1.1E+02 0.0023 32.5 12.7 137 106-261 37-199 (360)
197 PLN03228 methylthioalkylmalate 65.8 1.7E+02 0.0036 32.6 14.9 148 106-268 101-258 (503)
198 TIGR00977 LeuA_rel 2-isopropyl 65.7 2.3E+02 0.005 31.7 17.3 151 106-269 18-174 (526)
199 PRK14024 phosphoribosyl isomer 65.4 1.5E+02 0.0032 29.4 13.6 132 112-272 33-169 (241)
200 cd00739 DHPS DHPS subgroup of 65.1 1.2E+02 0.0027 30.4 12.7 28 106-133 19-46 (257)
201 PRK09282 pyruvate carboxylase 64.9 2.5E+02 0.0054 31.9 17.5 27 107-133 22-48 (592)
202 PRK08005 epimerase; Validated 64.4 1.5E+02 0.0032 29.0 14.7 136 107-282 9-146 (210)
203 PRK08091 ribulose-phosphate 3- 63.8 1.6E+02 0.0035 29.2 16.7 151 107-301 21-173 (228)
204 cd00423 Pterin_binding Pterin 63.8 12 0.00025 37.6 5.1 140 106-261 19-194 (258)
205 COG0685 MetF 5,10-methylenetet 63.6 1.1E+02 0.0023 31.5 12.1 119 106-243 87-210 (291)
206 COG0159 TrpA Tryptophan syntha 63.1 1.4E+02 0.0031 30.3 12.5 27 206-232 68-94 (265)
207 TIGR01108 oadA oxaloacetate de 62.9 2.7E+02 0.0059 31.6 18.1 52 107-158 17-69 (582)
208 PF00834 Ribul_P_3_epim: Ribul 62.1 70 0.0015 31.0 9.9 152 107-302 8-161 (201)
209 PRK11613 folP dihydropteroate 62.0 1.8E+02 0.004 29.7 13.4 30 106-135 33-62 (282)
210 TIGR00676 fadh2 5,10-methylene 60.3 1.7E+02 0.0037 29.5 12.9 126 94-245 58-194 (272)
211 cd02065 B12-binding_like B12 b 59.5 6 0.00013 34.3 1.9 35 12-50 80-116 (125)
212 PRK15452 putative protease; Pr 58.7 62 0.0013 35.3 9.8 81 182-270 16-97 (443)
213 PLN02321 2-isopropylmalate syn 57.2 1.9E+02 0.0041 33.1 13.7 145 106-268 103-259 (632)
214 TIGR01227 hutG formimidoylglut 57.1 1.5E+02 0.0033 30.4 12.1 157 110-276 97-289 (307)
215 PF04481 DUF561: Protein of un 57.0 2.1E+02 0.0045 28.4 14.8 128 107-267 23-150 (242)
216 COG2265 TrmA SAM-dependent met 55.8 58 0.0013 35.4 9.0 57 313-373 3-59 (432)
217 PLN02540 methylenetetrahydrofo 54.6 3.6E+02 0.0078 30.5 15.0 63 92-156 56-124 (565)
218 PRK13111 trpA tryptophan synth 53.7 25 0.00055 35.4 5.5 74 192-268 40-123 (258)
219 TIGR00262 trpA tryptophan synt 53.3 1.9E+02 0.0042 29.0 11.8 28 207-234 62-89 (256)
220 PF01261 AP_endonuc_2: Xylose 52.9 1.6E+02 0.0035 27.2 10.7 71 192-271 9-93 (213)
221 PRK12331 oxaloacetate decarbox 51.9 1.9E+02 0.0041 31.7 12.2 123 108-261 151-273 (448)
222 COG0826 Collagenase and relate 49.7 1E+02 0.0022 32.5 9.5 74 192-270 27-100 (347)
223 KOG3799 Rab3 effector RIM1 and 49.5 6.3 0.00014 35.5 0.4 17 84-100 75-91 (169)
224 PRK12331 oxaloacetate decarbox 47.8 4.1E+02 0.0089 29.1 19.0 144 107-269 22-174 (448)
225 TIGR00677 fadh2_euk methylenet 47.0 3.3E+02 0.0071 27.7 13.5 130 95-249 60-203 (281)
226 PRK12330 oxaloacetate decarbox 46.8 3.6E+02 0.0077 30.1 13.4 175 108-314 152-337 (499)
227 PRK09282 pyruvate carboxylase 46.1 4.1E+02 0.009 30.2 14.1 124 108-262 151-274 (592)
228 TIGR01496 DHPS dihydropteroate 45.7 56 0.0012 32.9 6.5 29 105-133 17-45 (257)
229 cd04731 HisF The cyclase subun 45.2 2.4E+02 0.0053 27.6 11.0 139 111-277 27-176 (243)
230 cd02072 Glm_B12_BD B12 binding 45.0 1.2E+02 0.0025 27.4 7.8 58 214-280 62-120 (128)
231 PRK12330 oxaloacetate decarbox 44.4 4.9E+02 0.011 29.0 18.1 50 108-158 24-75 (499)
232 PRK13774 formimidoylglutamase; 44.1 2.1E+02 0.0045 29.5 10.7 155 110-276 106-293 (311)
233 cd01301 rDP_like renal dipepti 43.2 4E+02 0.0086 27.6 13.4 135 114-270 116-263 (309)
234 TIGR00736 nifR3_rel_arch TIM-b 41.7 3.6E+02 0.0077 26.8 11.4 98 164-272 71-171 (231)
235 PF02219 MTHFR: Methylenetetra 41.3 3.9E+02 0.0085 27.0 13.6 115 106-240 80-208 (287)
236 PF04551 GcpE: GcpE protein; 41.1 91 0.002 33.0 7.3 133 106-259 26-197 (359)
237 cd04723 HisA_HisF Phosphoribos 38.5 2.8E+02 0.006 27.3 10.1 134 112-277 36-172 (233)
238 PRK14042 pyruvate carboxylase 38.5 6.5E+02 0.014 28.7 17.0 45 213-261 150-195 (596)
239 PF08902 DUF1848: Domain of un 38.1 4.5E+02 0.0098 26.8 12.6 51 107-159 55-111 (266)
240 TIGR01501 MthylAspMutase methy 37.7 1.7E+02 0.0036 26.6 7.7 59 213-280 63-122 (134)
241 TIGR03572 WbuZ glycosyl amidat 37.6 3.9E+02 0.0084 25.9 12.5 133 109-273 31-177 (232)
242 PHA01735 hypothetical protein 37.6 49 0.0011 26.5 3.6 42 246-293 30-75 (76)
243 cd07942 DRE_TIM_LeuA Mycobacte 37.2 4.7E+02 0.01 26.7 16.0 153 95-261 4-168 (284)
244 PRK02048 4-hydroxy-3-methylbut 37.1 6.8E+02 0.015 28.5 14.0 67 194-264 156-229 (611)
245 PRK13585 1-(5-phosphoribosyl)- 37.1 4E+02 0.0087 25.9 12.6 133 113-272 34-172 (241)
246 cd03409 Chelatase_Class_II Cla 37.0 1.1E+02 0.0023 25.3 6.1 60 216-279 16-75 (101)
247 TIGR00696 wecB_tagA_cpsF bacte 36.6 1.8E+02 0.0038 27.6 8.0 52 215-270 57-108 (177)
248 TIGR00007 phosphoribosylformim 36.5 4E+02 0.0087 25.7 12.3 137 112-277 29-172 (230)
249 PRK00748 1-(5-phosphoribosyl)- 36.5 4E+02 0.0086 25.7 11.4 130 112-270 31-167 (233)
250 PRK12581 oxaloacetate decarbox 35.6 4E+02 0.0087 29.4 11.5 124 108-262 160-283 (468)
251 PRK10812 putative DNAse; Provi 34.9 1.8E+02 0.004 29.2 8.4 133 109-272 21-158 (265)
252 PRK14057 epimerase; Provisiona 34.9 4.9E+02 0.011 26.3 14.8 136 107-282 28-172 (254)
253 PRK08745 ribulose-phosphate 3- 34.5 4.6E+02 0.01 25.8 15.0 137 107-282 12-150 (223)
254 cd00452 KDPG_aldolase KDPG and 34.3 4E+02 0.0087 25.1 13.5 116 106-271 11-126 (190)
255 PF06180 CbiK: Cobalt chelatas 34.2 5.1E+02 0.011 26.2 13.0 148 109-281 56-215 (262)
256 cd04732 HisA HisA. Phosphorib 34.0 4.4E+02 0.0094 25.4 10.9 132 112-271 30-168 (234)
257 PF00296 Bac_luciferase: Lucif 33.9 4.8E+02 0.01 26.1 11.4 110 109-230 21-140 (307)
258 cd06556 ICL_KPHMT Members of t 33.0 1.3E+02 0.0028 30.0 6.8 56 213-269 54-109 (240)
259 PRK00923 sirohydrochlorin coba 32.9 1.6E+02 0.0034 25.8 6.7 60 216-280 17-77 (126)
260 CHL00200 trpA tryptophan synth 32.5 5.4E+02 0.012 26.0 12.2 23 207-229 67-89 (263)
261 PLN02615 arginase 32.4 6.1E+02 0.013 26.6 12.6 155 110-276 132-315 (338)
262 COG2875 CobM Precorrin-4 methy 32.4 4.5E+02 0.0099 26.4 10.1 43 106-153 57-99 (254)
263 PRK00694 4-hydroxy-3-methylbut 31.7 4.9E+02 0.011 29.5 11.4 28 106-133 40-67 (606)
264 PF01207 Dus: Dihydrouridine s 31.5 3.8E+02 0.0083 27.5 10.2 108 164-283 57-167 (309)
265 cd00945 Aldolase_Class_I Class 31.5 4.1E+02 0.0089 24.3 12.6 136 109-269 11-149 (201)
266 PF13714 PEP_mutase: Phosphoen 31.0 3.6E+02 0.0078 26.8 9.6 81 214-300 52-132 (238)
267 PRK14041 oxaloacetate decarbox 30.7 5.3E+02 0.012 28.4 11.6 124 108-262 150-273 (467)
268 TIGR00640 acid_CoA_mut_C methy 30.6 86 0.0019 28.2 4.6 40 1-41 70-114 (132)
269 TIGR00479 rumA 23S rRNA (uraci 30.4 1.8E+02 0.0039 31.2 8.0 42 330-374 8-49 (431)
270 PRK08883 ribulose-phosphate 3- 30.4 5.3E+02 0.011 25.2 16.9 137 107-282 8-146 (220)
271 cd03321 mandelate_racemase Man 29.6 3.3E+02 0.0072 28.4 9.6 94 109-212 141-234 (355)
272 TIGR03217 4OH_2_O_val_ald 4-hy 29.4 2.3E+02 0.005 29.6 8.2 48 107-158 139-186 (333)
273 PRK02261 methylaspartate mutas 28.9 1.1E+02 0.0024 27.7 5.0 50 2-52 72-133 (137)
274 TIGR03555 F420_mer 5,10-methyl 28.6 6.6E+02 0.014 25.8 12.2 105 108-229 9-122 (325)
275 TIGR00970 leuA_yeast 2-isoprop 28.5 9E+02 0.019 27.3 15.5 141 106-263 43-198 (564)
276 PF03808 Glyco_tran_WecB: Glyc 28.4 2E+02 0.0043 26.9 6.9 53 215-270 57-109 (172)
277 COG2355 Zn-dependent dipeptida 28.4 7E+02 0.015 26.0 12.7 141 107-269 104-259 (313)
278 PRK01076 L-rhamnose isomerase; 28.3 4.5E+02 0.0098 28.4 10.0 105 210-319 66-186 (419)
279 PLN02617 imidazole glycerol ph 28.2 8.5E+02 0.018 27.4 12.8 162 107-278 263-466 (538)
280 PF08013 Tagatose_6_P_K: Tagat 28.0 1.9E+02 0.0041 31.3 7.3 102 199-304 46-158 (424)
281 PRK01254 hypothetical protein; 27.9 80 0.0017 36.3 4.7 53 4-57 139-208 (707)
282 TIGR01748 rhaA L-rhamnose isom 27.8 3.7E+02 0.0079 29.0 9.2 64 208-272 60-133 (414)
283 PLN02495 oxidoreductase, actin 27.8 1.8E+02 0.0039 31.2 7.1 58 214-274 95-152 (385)
284 PF00977 His_biosynth: Histidi 27.8 1.2E+02 0.0025 29.9 5.4 137 114-278 32-175 (229)
285 cd00635 PLPDE_III_YBL036c_like 27.7 3.7E+02 0.0081 25.9 9.0 62 194-261 118-184 (222)
286 cd03315 MLE_like Muconate lact 27.5 4.8E+02 0.01 25.8 10.0 85 109-204 85-169 (265)
287 TIGR03278 methan_mark_10 putat 27.4 34 0.00073 36.9 1.6 17 86-102 6-22 (404)
288 PRK02261 methylaspartate mutas 27.3 2.6E+02 0.0057 25.2 7.3 58 214-280 66-124 (137)
289 PRK12336 translation initiatio 27.3 3E+02 0.0066 26.6 8.1 53 312-368 148-200 (201)
290 PF06968 BATS: Biotin and Thia 26.8 79 0.0017 26.5 3.5 25 270-294 4-28 (93)
291 cd03416 CbiX_SirB_N Sirohydroc 26.6 2.1E+02 0.0046 23.7 6.2 61 216-280 15-75 (101)
292 COG4252 Predicted transmembran 26.2 3.7E+02 0.008 29.0 9.1 56 202-261 67-124 (400)
293 KOG1160 Fe-S oxidoreductase [E 26.0 9.2E+02 0.02 26.6 15.0 106 192-300 403-514 (601)
294 cd01096 Alkanal_monooxygenase 25.7 7.2E+02 0.016 25.3 11.9 109 109-229 20-138 (315)
295 PRK03739 2-isopropylmalate syn 25.6 9.9E+02 0.022 26.9 13.6 140 106-260 47-196 (552)
296 COG0119 LeuA Isopropylmalate/h 25.6 8.8E+02 0.019 26.2 16.5 143 106-268 19-165 (409)
297 smart00876 BATS Biotin and Thi 25.6 67 0.0015 27.0 2.8 23 268-290 2-25 (94)
298 PRK15458 tagatose 6-phosphate 25.0 4.7E+02 0.01 28.4 9.6 102 197-304 44-158 (426)
299 PRK10425 DNase TatD; Provision 24.6 5E+02 0.011 26.0 9.4 134 108-272 15-155 (258)
300 cd03412 CbiK_N Anaerobic cobal 24.3 2.3E+02 0.005 25.1 6.3 61 217-277 17-84 (127)
301 PF00290 Trp_syntA: Tryptophan 24.3 7.5E+02 0.016 25.0 11.3 32 235-269 116-147 (259)
302 cd02803 OYE_like_FMN_family Ol 24.0 5.3E+02 0.012 26.3 9.8 55 218-272 193-251 (327)
303 cd04823 ALAD_PBGS_aspartate_ri 24.0 2.5E+02 0.0053 29.3 7.0 60 98-158 42-108 (320)
304 PRK01033 imidazole glycerol ph 23.8 7.3E+02 0.016 24.7 12.0 138 112-277 31-179 (258)
305 PF04495 GRASP55_65: GRASP55/6 23.1 38 0.00082 30.9 0.9 42 232-273 60-101 (138)
306 PF00490 ALAD: Delta-aminolevu 23.0 1.3E+02 0.0028 31.4 4.8 59 99-158 46-111 (324)
307 cd04724 Tryptophan_synthase_al 22.7 7.4E+02 0.016 24.4 10.3 20 247-266 114-133 (242)
308 COG1964 Predicted Fe-S oxidore 22.7 1E+03 0.023 26.1 14.5 142 107-272 90-241 (475)
309 cd00384 ALAD_PBGS Porphobilino 22.5 2.9E+02 0.0064 28.7 7.2 58 98-158 39-103 (314)
310 TIGR03820 lys_2_3_AblA lysine- 22.4 1E+03 0.022 25.9 12.0 100 118-236 179-280 (417)
311 TIGR00695 uxuA mannonate dehyd 22.4 2.6E+02 0.0056 30.2 7.1 151 109-261 41-219 (394)
312 cd03414 CbiX_SirB_C Sirohydroc 22.3 2.8E+02 0.0061 23.6 6.3 59 215-277 15-73 (117)
313 cd04824 eu_ALAD_PBGS_cysteine_ 22.2 3E+02 0.0065 28.7 7.2 60 98-158 39-106 (320)
314 PF01372 Melittin: Melittin; 22.2 46 0.00099 21.2 0.8 12 444-455 14-25 (26)
315 PTZ00170 D-ribulose-5-phosphat 22.1 7.5E+02 0.016 24.2 12.1 137 107-279 15-153 (228)
316 PRK02271 methylenetetrahydrome 21.8 8.7E+02 0.019 24.9 12.5 106 108-230 11-125 (325)
317 COG0648 Nfo Endonuclease IV [D 21.6 8.8E+02 0.019 24.8 11.0 130 106-275 82-217 (280)
318 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.5 6E+02 0.013 25.6 9.4 47 108-158 146-192 (275)
319 TIGR00284 dihydropteroate synt 21.4 1E+03 0.022 26.4 11.7 127 111-260 165-305 (499)
320 PRK09283 delta-aminolevulinic 21.4 3.1E+02 0.0067 28.7 7.1 57 99-158 48-111 (323)
321 PF00556 LHC: Antenna complex 21.3 1.2E+02 0.0025 21.6 2.9 27 483-509 5-31 (40)
322 cd06533 Glyco_transf_WecG_TagA 21.3 2.8E+02 0.006 25.9 6.4 53 215-270 55-107 (171)
323 PF05226 CHASE2: CHASE2 domain 21.3 6.2E+02 0.013 25.5 9.6 70 194-269 43-115 (310)
324 TIGR01229 rocF_arginase argina 20.9 8.9E+02 0.019 24.6 12.1 85 193-277 167-277 (300)
325 cd02072 Glm_B12_BD B12 binding 20.8 1.6E+02 0.0034 26.6 4.4 46 2-50 68-124 (128)
326 COG2513 PrpB PEP phosphonomuta 20.7 7.3E+02 0.016 25.6 9.6 74 215-296 62-141 (289)
327 PRK02506 dihydroorotate dehydr 20.6 8.5E+02 0.018 25.0 10.4 65 206-274 65-131 (310)
328 PRK04326 methionine synthase; 20.5 9.3E+02 0.02 24.6 15.7 161 110-305 160-323 (330)
329 PRK12581 oxaloacetate decarbox 20.4 1.2E+03 0.025 25.8 17.5 142 108-268 32-182 (468)
330 cd07943 DRE_TIM_HOA 4-hydroxy- 20.1 5E+02 0.011 25.8 8.4 47 108-158 138-184 (263)
331 cd03413 CbiK_C Anaerobic cobal 20.1 5.5E+02 0.012 21.9 9.3 60 216-281 15-74 (103)
332 PRK13384 delta-aminolevulinic 20.0 3.4E+02 0.0074 28.3 7.1 58 98-158 49-113 (322)
No 1
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-74 Score=606.28 Aligned_cols=361 Identities=34% Similarity=0.610 Sum_probs=316.5
Q ss_pred HHHHHHhc--CCCcEEEEccccCcchh-hhhCCcce-EEcCCChhHHHHHHHHHhcCCcee--ecccCCCCC-CCCCccc
Q 010162 3 TLIAKCKS--AKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVR 75 (516)
Q Consensus 3 ~iIr~~k~--~~~~VVV~GC~a~~~~~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~--~~~~~~~p~-~~l~~~~ 75 (516)
..|+++++ |+++|+|+||+||..++ ++++|+|| |+|++++++++++|++...+.... .....+... ..++..+
T Consensus 61 ~~i~~~~~~~p~~~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (437)
T COG0621 61 SAIGELKKLKPDAKIIVTGCLAQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRR 140 (437)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCc
Confidence 34556655 45789999999999854 67899999 899999999999999876543321 111111111 1233335
Q ss_pred CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC---CCHHHHHHH
Q 010162 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNA 152 (516)
Q Consensus 76 ~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~---~~l~eLL~~ 152 (516)
....+|||+|++||+++||||++|+.||+.||||+++|++|++.|+++|++||+|+|||+++||.|.+ .+|.+||++
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~ 220 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRE 220 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999975 789999999
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+ ++ ++.|+|+++++|..+++++ +.++...+++++|+|||+|||||+|||+|+|+||.+++++.++++|+++|+
T Consensus 221 l~~-I~--G~~riR~~~~~P~~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd 295 (437)
T COG0621 221 LSK-IP--GIERIRFGSSHPLEFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPD 295 (437)
T ss_pred Hhc-CC--CceEEEEecCCchhcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCC
Confidence 986 54 5799999999999999999 445567789999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhc
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLG 309 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~ 309 (516)
+.+++||||||||||+|||++|++|+++.+|+++|+|+|||+||||++.|+ |+|++++++|+++|+++++++ .++++
T Consensus 296 ~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~ 375 (437)
T COG0621 296 IAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQK 375 (437)
T ss_pred ceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 999999999999999999986 47999
Q ss_pred CCCcEEEEEEEEEe-cCCceEEEeccCcEEEEECCCCCC-CCCeEEEEEEEeecceEEEEEE
Q 010162 310 MEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 310 ~vG~~~~vlve~~~-~~~~~~~gr~~~~~~v~~~~~~~~-~G~~~~v~I~~~~~~~l~g~~i 369 (516)
++|++++||||+.. +++ .+.|||.+|.+|.+.+.... +|++++|+|+++..++|+|+++
T Consensus 376 ~vG~~~~VLVe~~~~~~~-~~~Grt~~~~~v~~~~~~~~~~G~~v~VkIt~~~~~~L~g~~v 436 (437)
T COG0621 376 LVGKTLEVLVEEGGSKKG-ELIGRTENYRPVVFGGVYTEDIGEFVEVKITEADEYSLIGEVV 436 (437)
T ss_pred hcCCEEEEEEEeccCcCC-ceEEEcCCCCEEEecCcccCCCCCEEEEEEEecCCCceEEEec
Confidence 99999999999532 334 58999999999999764233 8999999999999999999986
No 2
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5e-63 Score=534.23 Aligned_cols=359 Identities=31% Similarity=0.502 Sum_probs=307.7
Q ss_pred HHHhc--CCCcEEEEccccCcch---h-hhhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCC-CCC-CCCcccC
Q 010162 6 AKCKS--AKKPLVVAGCVPQGSR---D-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-PAL-DLPKVRR 76 (516)
Q Consensus 6 r~~k~--~~~~VVV~GC~a~~~~---~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~-p~~-~l~~~~~ 76 (516)
+++|+ ++.+|+|+|||||..+ + ++.+|+|| |+|+.+++.+++++.....+........... +.. ++|..+.
T Consensus 130 ~~~k~~~p~~~i~v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 209 (509)
T PRK14327 130 KHLKRENPDLLIGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIENLPKVRE 209 (509)
T ss_pred HHHHhhCCCCEEEEEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccccccccccccccC
Confidence 55555 3456999999999865 3 56899999 8999999999999987654432111100010 001 2343344
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAI 153 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~---~~l~eLL~~I 153 (516)
..+.+||+|++|||++|+||++|+.+|+.|++++++|++|++.+.+.|+++|+|+|+|+++||.+.. ..+.+|++.|
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I 289 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEI 289 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999997642 2478898888
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ ++ ..++|+.+.+|..+++++ +..+.+.+++++++|+|+||||+++|++|+|+|+.+++.++++.+++++|++
T Consensus 290 ~~-~~---i~~ir~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i 363 (509)
T PRK14327 290 RK-ID---IPRVRFTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNV 363 (509)
T ss_pred Hh-CC---CceEEEeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 64 32 468999999999999888 4455567788999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGM 310 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~ 310 (516)
.+++|||+||||||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|.++++++ ++++++
T Consensus 364 ~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~~~ 443 (509)
T PRK14327 364 ALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMKRY 443 (509)
T ss_pred EEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998 899999999999999999986 478999
Q ss_pred CCcEEEEEEEEEecC-CceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEe
Q 010162 311 EGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 370 (516)
Q Consensus 311 vG~~~~vlve~~~~~-~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~ 370 (516)
+|++++||||+.+.. +..+.||+++|..|+|.++...+|++++|+|+++..++|.|+++.
T Consensus 444 ~G~~~~VLve~~~~~~~~~~~Grt~~~~~V~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~~ 504 (509)
T PRK14327 444 EGQTVEVLVEGESKKNPEVLAGYTRKNKLVNFKGPKSLIGQLVKVKITEAKTWSLNGELVE 504 (509)
T ss_pred CCCEEEEEEEecccCCCceEEEECCCCcEEEECCCCCCCCCEEEEEEEeeecceEEEEEec
Confidence 999999999975432 225789999999999976555689999999999999999999987
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.5e-63 Score=530.48 Aligned_cols=361 Identities=26% Similarity=0.429 Sum_probs=304.1
Q ss_pred HHHhcC--CCcEEEEccccCcch-hh-hhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCC-CCCcccCCce
Q 010162 6 AKCKSA--KKPLVVAGCVPQGSR-DL-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKF 79 (516)
Q Consensus 6 r~~k~~--~~~VVV~GC~a~~~~-~~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~-~l~~~~~~~~ 79 (516)
+++|+. +.+|||+||+||.++ ++ +.+|+|| |+|+.++..|++++.+...+...........+.+ .++..+...+
T Consensus 70 ~~~k~~~~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (445)
T PRK14340 70 KGAKRRRKGLLVGVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSI 149 (445)
T ss_pred HHHhhcCCCCEEEEeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCc
Confidence 345444 456999999999974 44 4589999 8999999999999987654432211111111111 1222233456
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHHHHhCC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELP 158 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~-~~~l~eLL~~I~~~i~ 158 (516)
.+||++|||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.|+.+. ...+.+||+++.+ +.
T Consensus 150 ~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~-~~ 228 (445)
T PRK14340 150 SAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSR-AA 228 (445)
T ss_pred EEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhh-cC
Confidence 799999999999999999999999999999999999999999999999999999999998763 2468899998864 22
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 010162 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td 238 (516)
...++|+++.+|..+++++.+ .|.+.+++|+++|||+||+||++|+.|||+++.+++.++++.+++.+||+.+.+|
T Consensus 229 --~~~rir~~~~~p~~l~~ell~--~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 229 --PEMRIRFTTSHPKDISESLVR--TIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred --CCcEEEEccCChhhcCHHHHH--HHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 246899999999999888844 4456667899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc-CC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCCcE
Q 010162 239 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEGRV 314 (516)
Q Consensus 239 ~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~-~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG~~ 314 (516)
||+||||||++||++|++|+++++++++++|.|+|+||||+++ |+ ++|++++++|.++|.++++++ .++++++|++
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~~~vG~~ 384 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQRAVGSV 384 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999999999999999999999999995 87 899999999999999999986 4899999999
Q ss_pred EEEEEEEEecCC-ceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEee
Q 010162 315 ERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371 (516)
Q Consensus 315 ~~vlve~~~~~~-~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~ 371 (516)
.+||||+...++ ..+.|||++|.+|++.+....+|++++|+|+++..++|+|++++.
T Consensus 385 ~~vlve~~~~~~~~~~~grt~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 442 (445)
T PRK14340 385 VEVLAESESRRSSEQLMGRTDGNRVVVFDRGGFQPGDLVRVRITGSTSATLSGEPAGN 442 (445)
T ss_pred EEEEEEecccCCCCeEEEECCCCeEEEECCCCCCCCCEEEEEEEecccccEEEEEccC
Confidence 999999643321 257899999999988643345899999999999999999998764
No 4
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.7e-63 Score=524.37 Aligned_cols=358 Identities=27% Similarity=0.509 Sum_probs=302.7
Q ss_pred HHHHHHh---cCCCcEEEEccccCcch-h-hhhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccC
Q 010162 3 TLIAKCK---SAKKPLVVAGCVPQGSR-D-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRR 76 (516)
Q Consensus 3 ~iIr~~k---~~~~~VVV~GC~a~~~~-~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~ 76 (516)
..|++++ +++++|||+||||+.++ + ++++|+|| |+|+.++..+++++.... ...... .. ..+.+..+..+.
T Consensus 48 ~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~ 124 (420)
T PRK14339 48 SEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKRAPYVDFVLGARNVSKISQVIHTPK-AVEVDI-DY-DESTYAFADFRK 124 (420)
T ss_pred HHHHHHHHhhCCCCeEEEECCccccCCHHHHhhCCCCcEEECCCCHHHHHHHHHhhc-ccceec-cc-cccccccccccC
Confidence 4566653 45678999999999874 4 45799999 899999999999986531 111110 00 000011111123
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-----CCHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLN 151 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-----~~l~eLL~ 151 (516)
..+.+||++|||||++|+||++|..+|+.+++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+||+
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~ 204 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLD 204 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999987631 35889998
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.+.+ ++ +..|+|+++++|..+++++ +..|.+++.+|+++|||+||+||++|++|||+|+.+++.++++.++++.|
T Consensus 205 ~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p 279 (420)
T PRK14339 205 KLSE-IE--GLERIRFTSPHPLHMDDKF--LEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVP 279 (420)
T ss_pred HHhc-CC--CccEEEECCCChhhcCHHH--HHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCC
Confidence 8863 33 3578999999999888888 44555666789999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhh
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYL 308 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~ 308 (516)
++.+.+|||+||||||++||++|++|+++++++++++|.|+|+||||+++|+ ++|++++++|.++|+++++++ ++++
T Consensus 280 ~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~ 359 (420)
T PRK14339 280 EVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAK 359 (420)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999986 4789
Q ss_pred cCCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 309 GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 309 ~~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
+++|++.+||||+...++ .+.||+.+|.+|++.++...+|++++|+|+++..++|+|+++
T Consensus 360 ~~vG~~~~vlve~~~~~~-~~~g~t~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~ 419 (420)
T PRK14339 360 KEVGKTHVVLFEELRANG-GVAGRSDNNKLVQVKGSEELLGEFVKVKITNASRGVLYGEIV 419 (420)
T ss_pred HhCCCEEEEEEEEecCCC-eEEEECCCCeEEEECCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 999999999999754334 578999999999996543348999999999999999999875
No 5
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-62 Score=526.29 Aligned_cols=353 Identities=25% Similarity=0.435 Sum_probs=299.2
Q ss_pred CCCcEEEEccccCcchh-h-hhCCcce-EEcCCChhHHHHHHHHHhcCCceeeccc-CCCCCC-CCCcccCCceEEEEEe
Q 010162 11 AKKPLVVAGCVPQGSRD-L-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPI 85 (516)
Q Consensus 11 ~~~~VVV~GC~a~~~~~-~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~-~~~p~~-~l~~~~~~~~~a~V~i 85 (516)
++.+|||||||||.+++ + ++.+.|| |+|+.+++.++++++....|........ .....+ ++|......+.+||+|
T Consensus 81 p~~~ivv~GC~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~i 160 (449)
T PRK14332 81 PNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTI 160 (449)
T ss_pred CCCEEEEECcccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEe
Confidence 45679999999999754 4 3555699 8999999999999988765543211110 000111 1222223346799999
Q ss_pred CCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE
Q 010162 86 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 165 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~i 165 (516)
|||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ..|.+|++++.+ . .+..|+
T Consensus 161 srGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~--~~~~~i 236 (449)
T PRK14332 161 MRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-E--TTIERI 236 (449)
T ss_pred cCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-C--CCcceE
Confidence 999999999999999999999999999999999999999999999999999998753 468999988764 3 245799
Q ss_pred EEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 010162 166 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245 (516)
Q Consensus 166 ri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG 245 (516)
|+++.+|..+++++ +..|.+.+++|+++|+|+||+||++|++|||+|+.+++.++++.+++++|++.+.+|||+||||
T Consensus 237 r~~~~~p~~~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPg 314 (449)
T PRK14332 237 RFTSPHPKDFPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPN 314 (449)
T ss_pred EEECCCcccCCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCC
Confidence 99999999998887 4445567778999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc-cCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCCcEEEEEEEE
Q 010162 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERIWITE 321 (516)
Q Consensus 246 ETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~-~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG~~~~vlve~ 321 (516)
||++||++|++|+++++++++++|.|||+||||++ .|+ ++|++++++|.++|+++++++ +++++++|++.+||||+
T Consensus 315 ET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~ 394 (449)
T PRK14332 315 ETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIEN 394 (449)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 99999999999999999999999999999999999 687 899999999999999999986 48999999999999997
Q ss_pred EecCC-ceEEEeccCcEEEEECCC--C---CCCCCeEEEEEEEeecceEEEEEE
Q 010162 322 IAADG-IHLVGHTKGYVQVLVPST--G---NMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 322 ~~~~~-~~~~gr~~~~~~v~~~~~--~---~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
.++++ ..+.||+++|.+|+|+.+ . ..+|++++|+|++++.++|+|+++
T Consensus 395 ~~~~~~~~~~gr~~~~~~v~~~~~~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~ 448 (449)
T PRK14332 395 TSRKSEKQLCGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKIL 448 (449)
T ss_pred ccCCCCCeEEEECCCCeEEEEecCCCcccccCCCCEEEEEEEecccCcEEEEEe
Confidence 54332 257899999999887621 1 248999999999999999999976
No 6
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.6e-62 Score=522.47 Aligned_cols=359 Identities=24% Similarity=0.454 Sum_probs=300.0
Q ss_pred CCCcEEEEccccCcch-hh-hhCCcce-EEcCCChhHHHHHHHHHhcC---Cceee------cccCCCCCCCC-Cc-ccC
Q 010162 11 AKKPLVVAGCVPQGSR-DL-KELEGVS-IVGVQQIDRVVEVVEETLKG---HEVRL------LHRKKLPALDL-PK-VRR 76 (516)
Q Consensus 11 ~~~~VVV~GC~a~~~~-~~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g---~~~~~------~~~~~~p~~~l-~~-~~~ 76 (516)
++++||||||||+.++ ++ +++|+|| |+|++++..|++++++...+ ..... +...++|..++ |. ...
T Consensus 70 ~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 149 (455)
T PRK14335 70 RAFFIILMGCMAERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSE 149 (455)
T ss_pred CCcEEEEecccccchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccC
Confidence 4567999999999975 44 5699999 89999999999998765321 11000 00011222221 11 112
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc----CCCHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNA 152 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~----~~~l~eLL~~ 152 (516)
..+++||+|+||||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.|+.+. ...+.+||++
T Consensus 150 ~~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~ 229 (455)
T PRK14335 150 GSFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRH 229 (455)
T ss_pred CCceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999996421 1358999998
Q ss_pred HHHhCC-CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 153 IVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 153 I~~~i~-~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
|.+... ..+..|+|+.+++|..+++++ +..|.+.+++|+++|||+||+|+++|+.|||+|+.+++.++++.+++++|
T Consensus 230 l~~~~~~~~~i~~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~p 307 (455)
T PRK14335 230 IVRRAEVTDQIRWIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIP 307 (455)
T ss_pred HHHhhcccCCceEEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 853221 123579999999999998888 44455556789999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhh
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYL 308 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~ 308 (516)
|+.+.+|||+||||||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|.++|+++++++ ++++
T Consensus 308 gi~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~ 387 (455)
T PRK14335 308 NVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMK 387 (455)
T ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999986 4899
Q ss_pred cCCCcEEEEEEEEEecC-CceEEEeccCcEEEEECCC--CCCCCCeEEEEEEEeecceEEEEEEee
Q 010162 309 GMEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIKI 371 (516)
Q Consensus 309 ~~vG~~~~vlve~~~~~-~~~~~gr~~~~~~v~~~~~--~~~~G~~~~v~I~~~~~~~l~g~~i~~ 371 (516)
+++|++.+||||+...+ +..+.|||++|.+|++.++ ...+|++++|+|+++..++|+|+++..
T Consensus 388 ~~~G~~~~vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 453 (455)
T PRK14335 388 ARVGKTLPVLVESRSRNNPEELFGHTELGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLVQE 453 (455)
T ss_pred HhCCCEEEEEEeccccCCCCeeEEECCCCeEEEEcCCcccCCCCCEEEEEEEEcccCeEEEEEecC
Confidence 99999999999864322 1257899999999998643 224799999999999999999998753
No 7
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3e-61 Score=515.15 Aligned_cols=362 Identities=30% Similarity=0.511 Sum_probs=306.8
Q ss_pred HHHHHH----hcCCCcEEEEccccCcchh-hhhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCC--CCCcc
Q 010162 3 TLIAKC----KSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKV 74 (516)
Q Consensus 3 ~iIr~~----k~~~~~VVV~GC~a~~~~~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~--~l~~~ 74 (516)
.+++++ |+++++||||||||+..++ +.++ ++| |+|+.++..|+++|++...|....... ...+.. ..|..
T Consensus 58 ~~i~~~~~~~r~~~~~vvv~Gc~a~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 135 (434)
T PRK14330 58 SELGQLLKLKRKKNLIIGVAGCVAEKEREKLLKR-GADFVIGTRAVPKVTEAVKRALNGEKVALFE-DKLDEITYELPRI 135 (434)
T ss_pred HHHHHHHHhcccCCCEEEEECccccCchhhHHhc-CCcEEEcCCCHHHHHHHHHHHhcCCceEeec-ccccccccccccc
Confidence 467777 5668899999999999754 5555 889 899999999999999877654321111 111111 11222
Q ss_pred cCCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc--CCCHHHHHHH
Q 010162 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNA 152 (516)
Q Consensus 75 ~~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~--~~~l~eLL~~ 152 (516)
+..+.++||+++||||++|+||++|..+|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.
T Consensus 136 ~~~~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~ 215 (434)
T PRK14330 136 RSSKHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEE 215 (434)
T ss_pred cCCCcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHH
Confidence 22356789999999999999999999999999999999999999999999999999999999998764 2468888887
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+ ++ +..++|+.+.+|..+++++.+ .+.+.+++|+++|||+||+|+++|+.|||+|+.+++.++++.+++++||
T Consensus 216 ~~~-~~--~~~~~~~~~~~p~~~~~ell~--~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~ 290 (434)
T PRK14330 216 ASK-IE--GIERIWFLTSYPTDFSDELIE--VIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPD 290 (434)
T ss_pred HHh-cC--CceEEEEecCChhhcCHHHHH--HHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 753 33 346778888899988888744 4456677799999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc-CC-CCCHHHHHHHHHHHHHHHHHH--hhhh
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEAF--TPYL 308 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~-~~-~v~~~~~~eR~~~L~~l~~~~--~~~~ 308 (516)
+.+.+|||+||||||+++|++|++|+++++++++++|.|+|+||||+++ ++ ++|++++++|.++|+++++++ ++++
T Consensus 291 i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~ 370 (434)
T PRK14330 291 ASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNE 370 (434)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 66 899999999999999999986 4899
Q ss_pred cCCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeec
Q 010162 309 GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 372 (516)
Q Consensus 309 ~~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~ 372 (516)
+++|++.+||||+..+++ .+.|||.+|.+|++.++...+|++++|+|+++..++|+|++++..
T Consensus 371 ~~~G~~~~vlve~~~~~~-~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~ 433 (434)
T PRK14330 371 RYLGKTVEIIVEAKAKNG-LFYGRDIRNKIIAFEGEEELIGRFADVKIEKITAGPLYGKVVKIL 433 (434)
T ss_pred HhCCCEEEEEEEEccCCC-eEEEECCCCEEEEECCCCCCCCCEEEEEEEEeecCeEEEEEEEec
Confidence 999999999999754444 578999999999986543458999999999999999999988753
No 8
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.9e-61 Score=513.82 Aligned_cols=360 Identities=33% Similarity=0.564 Sum_probs=306.0
Q ss_pred HHHhc--CCCcEEEEccccCcch-h-hhhCCcce-EEcCCChhHHHHHHHHHhcCCce-eeccc--CCCCCCC-CCcccC
Q 010162 6 AKCKS--AKKPLVVAGCVPQGSR-D-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-RLLHR--KKLPALD-LPKVRR 76 (516)
Q Consensus 6 r~~k~--~~~~VVV~GC~a~~~~-~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~-~~~~~--~~~p~~~-l~~~~~ 76 (516)
+++|+ ++.+||||||||+..+ + ++.+|+|| |+|+.++..++++++....+... ..... ...+.++ +|..+.
T Consensus 64 ~~~k~~~p~~~ivv~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~ 143 (437)
T PRK14331 64 KKIKEKNPNALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRD 143 (437)
T ss_pred HHHHHhCCCCEEEEEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccC
Confidence 55555 5668999999999975 4 46899999 89999999999999876544321 11110 0111111 232233
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 155 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-~~l~eLL~~I~~ 155 (516)
..+.+||+++||||++|+||++|..+|++|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..+.+|++++.+
T Consensus 144 ~~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~ 223 (437)
T PRK14331 144 NKYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE 223 (437)
T ss_pred CCcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc
Confidence 3567999999999999999999999999999999999999999999999999999999999997643 468899998864
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
.+ +..++++++.+|..+++++ +..|.+.+++|+++|+|+||+|+++|++|+|+++.+++.++++.+++++||+.+
T Consensus 224 -~~--g~~~i~~~~~~p~~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i 298 (437)
T PRK14331 224 -ID--GVERIRFTTGHPRDLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITF 298 (437)
T ss_pred -CC--CccEEEEeccCcccCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 32 3468999988999888888 445556666799999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCC
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEG 312 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG 312 (516)
.+|||+||||||++||++|++|+++++++++++|.|+|+||||+++++ ++|++++++|.++|.++++++ +++++++|
T Consensus 299 ~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 378 (437)
T PRK14331 299 STDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKALSYEG 378 (437)
T ss_pred ecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 899999999999999999985 48999999
Q ss_pred cEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEee
Q 010162 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371 (516)
Q Consensus 313 ~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~ 371 (516)
++.+|+||+...++ .++||+++|.+|++.++....|++++|+|+++..++|+|+++.+
T Consensus 379 ~~~~vlve~~~~~~-~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~ 436 (437)
T PRK14331 379 TVQEVLVEEEKEGN-KLIGRTRTNKWVSIEGSQEMLGKIVKVKIIKSNPFSLEGEILEG 436 (437)
T ss_pred CEEEEEEEEecCCC-cEEEECCCCCEEEECCCCCCCCCEEEEEEEeeecccEEEEEecc
Confidence 99999998753333 57899999999999654445899999999999999999998864
No 9
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.6e-61 Score=514.78 Aligned_cols=360 Identities=27% Similarity=0.438 Sum_probs=300.4
Q ss_pred HHHhc--CCCcEEEEccccCcch-hh-hhCCcce-EEcCCChhHHHHHHHHHhcCCceeecc---cCCCCCCCCCcccCC
Q 010162 6 AKCKS--AKKPLVVAGCVPQGSR-DL-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPKVRRN 77 (516)
Q Consensus 6 r~~k~--~~~~VVV~GC~a~~~~-~~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~---~~~~p~~~l~~~~~~ 77 (516)
+++|+ ++++||||||||+..+ ++ +..|+|| |+|+.++..|+++++....+....... ...+++...+.....
T Consensus 87 ~~~k~~~p~~~ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK14329 87 NALKKKNPKLIVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGN 166 (467)
T ss_pred HHHHhhCCCcEEEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCC
Confidence 55555 5568999999999974 44 4556799 899999999999998865554321111 001111100111123
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-------CCHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILL 150 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-------~~l~eLL 150 (516)
..++||++|||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|+++|+.+.. ..+.+||
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll 246 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLL 246 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999986532 2588898
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 010162 151 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230 (516)
Q Consensus 151 ~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 230 (516)
+.+.+..+ ..++|+++.+|..+++++ +..|.+.+++|+++|||+||+||++|+.|||+++.+++.++++.++++.
T Consensus 247 ~~l~~~~~---~~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~ 321 (467)
T PRK14329 247 EMVAEAVP---DMRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRII 321 (467)
T ss_pred HHHHhcCC---CcEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 88865332 358899999999998887 4444556667999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc-CC-CCCHHHHHHHHHHHHHHHHHH--hh
Q 010162 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEAF--TP 306 (516)
Q Consensus 231 pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~-~~-~v~~~~~~eR~~~L~~l~~~~--~~ 306 (516)
|++.+++|||+||||||++||++|++|+++++++++++|.|+|+||||+++ |+ ++|.+++++|.++|+++++++ ++
T Consensus 322 ~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 401 (467)
T PRK14329 322 PDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLER 401 (467)
T ss_pred CCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 87 899999999999999999985 48
Q ss_pred hhcCCCcEEEEEEEEEecC-CceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEe
Q 010162 307 YLGMEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 370 (516)
Q Consensus 307 ~~~~vG~~~~vlve~~~~~-~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~ 370 (516)
+++++|++.+||||+...+ +..+.|||++|.+|++.++...+|++++|+|+++..++|+|++++
T Consensus 402 ~~~~~G~~~~vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 466 (467)
T PRK14329 402 NQRDIGKTFEVLIEGVSKRSREQLFGRNSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466 (467)
T ss_pred HHHhCCCEEEEEEEecccCCCCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEec
Confidence 9999999999999864322 125789999999999865444589999999999999999999874
No 10
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.6e-60 Score=510.84 Aligned_cols=354 Identities=28% Similarity=0.447 Sum_probs=297.3
Q ss_pred CCCcEEEEccccCcch-h-hhhCCcce-EEcCCChhHHHHHHHHHhcCCceee-c-cc-CCCCCCCC-CcccCCceEEEE
Q 010162 11 AKKPLVVAGCVPQGSR-D-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL-L-HR-KKLPALDL-PKVRRNKFVEIL 83 (516)
Q Consensus 11 ~~~~VVV~GC~a~~~~-~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~-~-~~-~~~p~~~l-~~~~~~~~~a~V 83 (516)
++++||||||+|+.++ + ++++|+|| |+|+.++..++++++....+..... + .. ..+|..+. +........+||
T Consensus 73 p~~~ivv~GC~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v 152 (446)
T PRK14337 73 PDVFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFV 152 (446)
T ss_pred CCCEEEEECCccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEE
Confidence 4568999999999864 4 45899999 8999999999999987643322111 0 00 11221111 122234567999
Q ss_pred EeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCCCC
Q 010162 84 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPD 160 (516)
Q Consensus 84 ~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~---~~~l~eLL~~I~~~i~~~ 160 (516)
+++||||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.|. ...+.+|++++.+ ++
T Consensus 153 ~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~-- 229 (446)
T PRK14337 153 NIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP-- 229 (446)
T ss_pred EeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--
Confidence 99999999999999999999999999999999999999999999999999999998764 2468899998864 43
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 161 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 161 ~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
+..++|+.+.+|..+++++. ..+...+.+|+++|+|+||+|+++|+.|||+|+.+++.++++.+++..|++.+.+|||
T Consensus 230 g~~~ir~~~~~p~~i~~ell--~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~I 307 (446)
T PRK14337 230 GLERLRFTTPHPKDIAPEVI--EAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLI 307 (446)
T ss_pred CCcEEEEccCCcccCCHHHH--HHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Confidence 34689999999999988874 3444555679999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCCcEEEE
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERI 317 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG~~~~v 317 (516)
+||||||++||++|++|+++++++.+++|.|||+||||+++|+ ++|++++++|.++|+++++++ .++++++|++.+|
T Consensus 308 vG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~~~vG~~~~v 387 (446)
T PRK14337 308 VGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQARVGRKTTV 387 (446)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999998 899999999999999999986 4899999999999
Q ss_pred EEEEEecC----CceEEEeccCcEEEEE--CCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 318 WITEIAAD----GIHLVGHTKGYVQVLV--PSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 318 lve~~~~~----~~~~~gr~~~~~~v~~--~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
+||+...+ +..+.||+.+|.+|.+ .++...+|++++|+|+++..++|+|+++
T Consensus 388 lve~~~~~~~~~~~~~~g~~~~~~~v~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 445 (446)
T PRK14337 388 LLEGPSRKPGEGGDSWQGRDPGGRVVNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445 (446)
T ss_pred EEEeccccCCCCCceEEEECCCCeEEEEecCCCcCCCCCEEEEEEEeeecceEEEEEC
Confidence 99864221 1247899999998655 3323348999999999999999999865
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.1e-60 Score=510.29 Aligned_cols=353 Identities=31% Similarity=0.530 Sum_probs=300.2
Q ss_pred CCCcEEEEccccCcchh-hh-hCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCC-CCCccc-CCceEEEEEe
Q 010162 11 AKKPLVVAGCVPQGSRD-LK-ELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPI 85 (516)
Q Consensus 11 ~~~~VVV~GC~a~~~~~-~~-~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~-~l~~~~-~~~~~a~V~i 85 (516)
|+.+||||||||+..++ +. ++|+|| |+|++++..|++++++...|...... ...+.+ +++.++ .....+||++
T Consensus 77 p~~~vvv~Gc~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~a~i~i 154 (448)
T PRK14333 77 PDLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQVVAT--EEIHILEDITKPRRDSSITAWVNV 154 (448)
T ss_pred CCCEEEEECccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCceeec--ccccccccccccccCCCeeEEEEh
Confidence 56789999999999754 44 689999 89999999999999887654432111 111111 222211 2235789999
Q ss_pred CCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC---------CCHHHHHHHHHHh
Q 010162 86 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAE 156 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~---------~~l~eLL~~I~~~ 156 (516)
++|||++|+||++|..+|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+.+.+
T Consensus 155 ~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~- 233 (448)
T PRK14333 155 IYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD- 233 (448)
T ss_pred hcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999986632 268999998864
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
++ +..++|+++.+|..+++++. ..+.+.+++|+++|||+||+|+++|+.|||+|+.+++.++++.+++++|++.+.
T Consensus 234 ~~--~~~rir~~~~~p~~~~~eli--~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~ 309 (448)
T PRK14333 234 VE--GIERIRFATSHPRYFTERLI--KACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASIS 309 (448)
T ss_pred cC--CCeEEEECCCChhhhhHHHH--HHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 43 34689998899999988884 444566677999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCCc
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEGR 313 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG~ 313 (516)
+|||+||||||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|+++++++ +++++++|+
T Consensus 310 ~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~ 389 (448)
T PRK14333 310 ADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGR 389 (448)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999998 899999999999999999985 489999999
Q ss_pred EEEEEEEEEecC-CceEEEeccCcEEEEECCC-CCCCCCeEEEEEEEeecceEEEEEEe
Q 010162 314 VERIWITEIAAD-GIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGRWSVFGEVIK 370 (516)
Q Consensus 314 ~~~vlve~~~~~-~~~~~gr~~~~~~v~~~~~-~~~~G~~~~v~I~~~~~~~l~g~~i~ 370 (516)
+.+|+||+...+ +..+.||+++|.+|++.++ ...+|++++|+|+++..++|+|++++
T Consensus 390 ~~~vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 448 (448)
T PRK14333 390 IEEVLVEGINPKDPSQVMGRTRTNRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPLK 448 (448)
T ss_pred EEEEEEEecccCCCceEEEECCCCcEEEEcCCCcCCCCCEEEEEEEeeecceEEEEEcC
Confidence 999999864322 2257899999999998643 23489999999999999999999863
No 12
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.9e-60 Score=503.73 Aligned_cols=343 Identities=29% Similarity=0.468 Sum_probs=295.7
Q ss_pred HHHHHhc--CCCcEEEEccccCcch-hhh-hCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccCCc
Q 010162 4 LIAKCKS--AKKPLVVAGCVPQGSR-DLK-ELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNK 78 (516)
Q Consensus 4 iIr~~k~--~~~~VVV~GC~a~~~~-~~~-~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~~~ 78 (516)
.++++++ ++++|||+||+|+.++ ++. .+|+|| |+|+.+...+.+.+... .. + ..+.
T Consensus 63 ~~~~~~~~~~~~~ivv~GC~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~------------~~-----~--~~~~ 123 (418)
T PRK14336 63 LLRKLKNKNPKLKIALTGCLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF------------IL-----P--LKPP 123 (418)
T ss_pred HHHHHHhhCCCCEEEEECChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh------------cc-----C--CCCC
Confidence 3455554 4567999999999975 454 699999 89999876666655311 01 1 1235
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHh
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE 156 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~I~~~ 156 (516)
..+||+|+||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++++.+
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~- 202 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD- 202 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-
Confidence 67899999999999999999999999999999999999999999999999999999999998743 358999998864
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
++ +..++|+.+.+|..+++++. ..+.+.+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++||+.+.
T Consensus 203 ~~--~~~~ir~~~~~p~~i~~ell--~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~ 278 (418)
T PRK14336 203 IP--GLLRIRFLTSHPKDISQKLI--DAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQ 278 (418)
T ss_pred cC--CccEEEEeccChhhcCHHHH--HHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 43 34689999999998888774 344555667999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc-CC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCC
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEG 312 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~-~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG 312 (516)
+|||+||||||+++|++|++|+++++++.+++|.|+|+||||+++ |+ ++|++++++|.++|+++++++ ++++.++|
T Consensus 279 ~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G 358 (418)
T PRK14336 279 TDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMD 358 (418)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999994 87 899999999999999999986 47899999
Q ss_pred cEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeec
Q 010162 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 372 (516)
Q Consensus 313 ~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~ 372 (516)
++.+|+||+.. ++ .+.||+.+|.+|++.+....+|++++|+|++++.++|+|++++..
T Consensus 359 ~~~~vlve~~~-~~-~~~g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~ 416 (418)
T PRK14336 359 TFAEVLVEGLQ-KN-KWQGRTLGGKLVFLESDLPLEGCLVNVKIFKTSPWSLQAKLVNIL 416 (418)
T ss_pred CEEEEEEEEcC-CC-eEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecccEEEEEeecc
Confidence 99999998632 33 478999999999886543347999999999999999999998754
No 13
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.4e-60 Score=505.08 Aligned_cols=362 Identities=31% Similarity=0.476 Sum_probs=303.3
Q ss_pred HHHHhc--CCCcEEEEccccCcchh-h-hhCCcce-EEcCCChhHHHHHHHHHh-cCCceeecccCCCCCCC-CCcccCC
Q 010162 5 IAKCKS--AKKPLVVAGCVPQGSRD-L-KELEGVS-IVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRN 77 (516)
Q Consensus 5 Ir~~k~--~~~~VVV~GC~a~~~~~-~-~~~p~vD-vvG~~~~~~i~~ll~~~~-~g~~~~~~~~~~~p~~~-l~~~~~~ 77 (516)
++++|+ ++++||||||||+..++ + +.+|+|| |+|++++..|++++++.. .|...........+.++ +|.++..
T Consensus 66 ~~~~k~~~p~~~vvvgGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~ 145 (444)
T PRK14325 66 WRKLKEKNPDLIIGVGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAE 145 (444)
T ss_pred HHHHHHhCCCCEEEEECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCC
Confidence 344444 57889999999999754 4 4589999 899999999999998764 34322111111112222 2322334
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAI 153 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~-d~---~~~l~eLL~~I 153 (516)
...+|++++||||++|+||++|..+|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...+.+|++++
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l 225 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLV 225 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999943 21 23588999888
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ ++ +..++|+++.+|..+++++ +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.++++.||+
T Consensus 226 ~~-~~--~~~~ir~~~~~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi 300 (444)
T PRK14325 226 AA-ID--GIERIRYTTSHPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDI 300 (444)
T ss_pred Hh-cC--CccEEEEccCCcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 64 43 3457899888999998888 4455566667999999999999999999999999999999999999998999
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGM 310 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~ 310 (516)
.+.+|||+||||||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|.++|+++++++ ++++++
T Consensus 301 ~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~ 380 (444)
T PRK14325 301 AISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSRSM 380 (444)
T ss_pred EEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 899999999999999999985 478899
Q ss_pred CCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEee
Q 010162 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371 (516)
Q Consensus 311 vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~ 371 (516)
+|++.+|+||+..+++..+.|||++|.+|+|.+....+|++++|+|+++..++|+|+++..
T Consensus 381 ~g~~~~vlve~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~ 441 (444)
T PRK14325 381 VGTVQRVLVEGPSRKDGQLIGRTENNRVVNFEGDPDLIGQFVDVKITEAYPNSLRGELVRT 441 (444)
T ss_pred cCCEEEEEEEEeecCCCeEEEECCCCcEEEECCCCCCCCCEEEEEEEEcccccEEEEEeec
Confidence 9999999998654332257899999999999643335899999999999999999998754
No 14
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1e-59 Score=510.04 Aligned_cols=360 Identities=28% Similarity=0.475 Sum_probs=301.6
Q ss_pred HHHHhc--CCCcEEEEccccCcch-hh-hhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCC--CCCcccCC
Q 010162 5 IAKCKS--AKKPLVVAGCVPQGSR-DL-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRN 77 (516)
Q Consensus 5 Ir~~k~--~~~~VVV~GC~a~~~~-~~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~--~l~~~~~~ 77 (516)
++++|+ ++.+||||||||+..+ ++ +..|+|| |+|+.++..|++++.+...+.............+ .+|..+..
T Consensus 76 ~~~~k~~~p~~~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~ 155 (502)
T PRK14326 76 LAPVKRANPGMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPSTLPARRES 155 (502)
T ss_pred HHHHHHhCCCCEEEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCccccccccccccccccccccCC
Confidence 455554 5678999999999975 44 4579999 8999999999999988765543211111111111 12222233
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~I~~ 155 (516)
.+.+||+||||||++|+||++|..+|+.|+|++++|++|++.+.+.|+++|+|+|+|+++||.+.. ..+.+|++.+..
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~ 235 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE 235 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999999999987642 347788887753
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
+. +..++|+++.+|..+++++ +..|.+.+++|+++|+|+||+||++|++|||+|+.+++.++++.++++.||+.+
T Consensus 236 -i~--~l~~ir~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i 310 (502)
T PRK14326 236 -ID--GLERVRFTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAI 310 (502)
T ss_pred -cC--CccEEEEeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 32 3468999999999988888 445556666799999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCC
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEG 312 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG 312 (516)
.+|||+||||||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|+++++++ .++++++|
T Consensus 311 ~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~~~vg 390 (502)
T PRK14326 311 TTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENRKLVG 390 (502)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 899999999999999999886 47999999
Q ss_pred cEEEEEEEEE-ecCC---ceEEEeccCcEEEEECCC----CCCCCCeEEEEEEEeecceEEEEEE
Q 010162 313 RVERIWITEI-AADG---IHLVGHTKGYVQVLVPST----GNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 313 ~~~~vlve~~-~~~~---~~~~gr~~~~~~v~~~~~----~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
+.++||||+. ...+ ..+.||+++|..|+|.+. ...+|++++|+|+++..++|+|+++
T Consensus 391 ~~~~vLve~~~~~~~~~~~~~~g~~~~~~~V~~~~~~~~~~~~~G~~v~v~I~~~~~~~L~g~~~ 455 (502)
T PRK14326 391 RTVELLVATGEGRKDAATHRMSGRARDGRLVHFTVPEGAPEVRPGDVVTVTVTYAAPHHLIADGG 455 (502)
T ss_pred CEEEEEEEecccccCCcCceeEEECCCCCEEEEccCCccccCCCCCEEEEEEEecccCcEEEEEe
Confidence 9999999842 1111 247899999999988642 2248999999999999999999987
No 15
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=1.9e-59 Score=501.65 Aligned_cols=359 Identities=28% Similarity=0.486 Sum_probs=302.1
Q ss_pred HHHhc--CCCcEEEEccccCcchh-hh-hCCcce-EEcCCChhHHHHHHHHHhcCCc-eeecccCCCCCC-CCCccc-CC
Q 010162 6 AKCKS--AKKPLVVAGCVPQGSRD-LK-ELEGVS-IVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVR-RN 77 (516)
Q Consensus 6 r~~k~--~~~~VVV~GC~a~~~~~-~~-~~p~vD-vvG~~~~~~i~~ll~~~~~g~~-~~~~~~~~~p~~-~l~~~~-~~ 77 (516)
+++|+ ++++|||+|||||..++ +. .+|+|| |+|+.++..+++++.....+.. .........+.. .+|... ..
T Consensus 64 ~~~k~~~~~~~ivv~GC~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
T TIGR01574 64 KKLKKKNPDLIIGVCGCMASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEG 143 (438)
T ss_pred HHHHhhCCCcEEEEeCccccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCC
Confidence 55555 45679999999999754 44 579999 8999999999999987654332 111111111111 123222 23
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC-CCCcC---CCHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAI 153 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y-g~d~~---~~l~eLL~~I 153 (516)
.+++||+++||||++|+||++|..+|+.|++|+++|++|++.+++.|+++|+|+|+|++.| |.+.. ..+.+|++.+
T Consensus 144 ~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l 223 (438)
T TIGR01574 144 IYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLREL 223 (438)
T ss_pred ceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 77642 3588999988
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ .+ +..|+|+++++|..+++++ +..+.+.+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++
T Consensus 224 ~~-~~--~~~~ir~~~~~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i 298 (438)
T TIGR01574 224 ST-ID--GIERIRFTSSHPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNV 298 (438)
T ss_pred Hh-cC--CceEEEEecCCcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 64 32 3578999999999888887 4455566677999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGM 310 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~ 310 (516)
.+.+|||+||||||++||++|++|+++++++++++|.|+|+||||+++++ ++|++++++|.++|+++++++ .+++++
T Consensus 299 ~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~ 378 (438)
T TIGR01574 299 SISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMRKQ 378 (438)
T ss_pred eEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998 899999999999999999986 478999
Q ss_pred CCcEEEEEEEEEecCC-ceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 311 EGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 311 vG~~~~vlve~~~~~~-~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
+|++.+|+||+...++ ..+.||+++|.+|+|.++...+|++++|+|+++..++|+|+++
T Consensus 379 ~G~~~~vlve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 438 (438)
T TIGR01574 379 EGKTFKVLVEGLSRNNPEELAGRTENNFLVNFEGSEDLIGKFVDVKITNVKRMSLRGEIV 438 (438)
T ss_pred CCCEEEEEEEeccCCCCceEEEECCCCCEEEECCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 9999999998643232 1478999999999997543358999999999999999999863
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.5e-59 Score=500.88 Aligned_cols=361 Identities=29% Similarity=0.494 Sum_probs=303.3
Q ss_pred HHHHhc--CCCcEEEEccccCc--ch-hh-hhCCcce-EEcCCChhHHHHHHHHHhcCC-ceeecccCCCCCC-CCCccc
Q 010162 5 IAKCKS--AKKPLVVAGCVPQG--SR-DL-KELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVR 75 (516)
Q Consensus 5 Ir~~k~--~~~~VVV~GC~a~~--~~-~~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~-~~~~~~~~~~p~~-~l~~~~ 75 (516)
++++++ ++++|||||||||. .+ ++ +++|+|| |+|+.++..+++++.....+. ..........+.+ ++|..+
T Consensus 64 ~~~~~~~~~~~~vvv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (439)
T PRK14328 64 LKKLKEKNPNLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDR 143 (439)
T ss_pred HHHHHhhCCCCEEEEECchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccc
Confidence 555655 45679999999998 54 34 4789999 899999999999998765432 2211111111111 222222
Q ss_pred CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHH
Q 010162 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI 153 (516)
Q Consensus 76 ~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~I 153 (516)
.....+||+|+||||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.+
T Consensus 144 ~~~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 144 KSKVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred CCCcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999997642 4688999888
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ ++ +..++|+.+.+|..+++++ +..|.+.+++|+++|+|+||+|+++|+.|||+|+.+++.++++.+++++|++
T Consensus 224 ~~-~~--~~~~ir~~~~~P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i 298 (439)
T PRK14328 224 NE-ID--GLERIRFMTSHPKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDV 298 (439)
T ss_pred Hh-cC--CCcEEEEecCChhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 64 43 3568899889999888887 4455566667999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGM 310 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~ 310 (516)
.+.+|||+||||||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.+.|.++++++ .+++++
T Consensus 299 ~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~ 378 (439)
T PRK14328 299 AITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNKEY 378 (439)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998 899999999999999999985 478999
Q ss_pred CCcEEEEEEEEEecCC-ceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEe
Q 010162 311 EGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 370 (516)
Q Consensus 311 vG~~~~vlve~~~~~~-~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~ 370 (516)
+|++.+|++|+...++ ..+.||+++|.+|++.++...+|++++|+|+++..++|+|++++
T Consensus 379 ~g~~~~vl~e~~~~~~~~~~~g~~~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 439 (439)
T PRK14328 379 EGKIVEVLVEGPSKNDENKLTGRTRTNKLVNFIGDKELIGKLVNVKITKANSFSLTGEVIE 439 (439)
T ss_pred CCCEEEEEEEecccCCCceEEEECCCCeEEEECCCCCCCCCEEEEEEEeeecceEEEEEeC
Confidence 9999999999743222 25789999999998864333589999999999999999998763
No 17
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=6.8e-59 Score=494.85 Aligned_cols=361 Identities=47% Similarity=0.787 Sum_probs=297.6
Q ss_pred HHHHHHHhcCCCcEEEEccccCcchh-hhhCCcc-eEEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccCCce
Q 010162 2 DTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKF 79 (516)
Q Consensus 2 ~~iIr~~k~~~~~VVV~GC~a~~~~~-~~~~p~v-DvvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~~~~ 79 (516)
...|+++++.+++|||||||||.+++ +...+.+ +++|+.++..++++++....... .... .....++.|..+....
T Consensus 56 ~~~i~~~~~~~~~vvv~GC~a~~~~e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 133 (420)
T TIGR01578 56 LYRIESLMRNGKHVVVAGCMPQAQKESVYDNGSVASVLGVQAIDRLVEVVEETLKKKV-HGRR-EAGTPLSLPKPRKNPL 133 (420)
T ss_pred HHHHHHHHhcCCCEEEECCcCccChHHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCc-cccc-ccccccccccccCCCc
Confidence 34677887778889999999999854 5555445 48999999999999877543211 0000 0000111232233457
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.++|++|||||++|+||++|..+|++|++|+|+|++|++.+.+.|+++|+|+|+|++.||.|....+.+|++.+. .++
T Consensus 134 ~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~-~i~- 211 (420)
T TIGR01578 134 IEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT-EIP- 211 (420)
T ss_pred EEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH-hCC-
Confidence 899999999999999999999999999999999999999999999999999999999999876556899998875 343
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 010162 160 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~ 239 (516)
+..++|+++++|..+.....++.+++..+++|+++|+|+||+|+++|++|+|+++.+++.++++.+++.+||+.+.+||
T Consensus 212 -~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~ 290 (420)
T TIGR01578 212 -GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDI 290 (420)
T ss_pred -CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeE
Confidence 3468999999997543222233333335667899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHH--hhhhcCCCcEEEE
Q 010162 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--TPYLGMEGRVERI 317 (516)
Q Consensus 240 IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG~~~~v 317 (516)
|+||||||+++|++|++|+++++++.+++|+|+|+||||+++|+++|++++++|.++|+++++++ +++++++|++.+|
T Consensus 291 IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~v 370 (420)
T TIGR01578 291 IVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHV 370 (420)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999986 4899999999999
Q ss_pred EEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 318 WITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 318 lve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
+||+...++ .+.|++ +|.+|++..+...+|++++|+|+++..++|+|+++
T Consensus 371 lve~~~~~~-~~~~~~-~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 420 (420)
T TIGR01578 371 LVTKEGKGD-SLDDED-AYRQVVIRSRTREPGEFAGVEITGAKTAYLIGEII 420 (420)
T ss_pred EEEecCCCC-eeeeCC-CCcEEEEcCCCCCCCCEEEEEEEeeecceEEEEEC
Confidence 998643333 456775 88888886443458999999999999999999864
No 18
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.2e-60 Score=471.60 Aligned_cols=375 Identities=63% Similarity=1.027 Sum_probs=357.6
Q ss_pred CHHHHHHHhcCCCcEEEEccccCcchhhhhCCcceEEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccCCceE
Q 010162 1 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV 80 (516)
Q Consensus 1 m~~iIr~~k~~~~~VVV~GC~a~~~~~~~~~p~vDvvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~~~~~ 80 (516)
|+..|.+.++.++++|++||.+|..+.+..+.++.|+|.+..+++++++++.++|..++.+.+...+++++|..|.+.+.
T Consensus 109 frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvvevveetlkghsvrll~rr~~galdlpkvrknpli 188 (547)
T KOG4355|consen 109 FRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVVEVVEETLKGHSVRLLTRRTLGALDLPKVRKNPLI 188 (547)
T ss_pred HHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHHHHHHHHhccceEeeeecccccccCchhhccCCce
Confidence 56788888888899999999999998877888899999999999999999999999999888888889999999999999
Q ss_pred EEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 010162 81 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 160 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~ 160 (516)
-.|.|+-||-+.|+||-....||...+++++++++.++...+.|+.+||++..|+++||+|.+.++..||.++.+.++.
T Consensus 189 eIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iPe- 267 (547)
T KOG4355|consen 189 EIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIPE- 267 (547)
T ss_pred EEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 161 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 161 ~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
...+|+++++|..+.+++.+++...+++++..++|+|+|||||.+|..|+|.|...++...++.+++..||+.|.||+|
T Consensus 268 -~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiI 346 (547)
T KOG4355|consen 268 -SCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDII 346 (547)
T ss_pred -hhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeee
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEE
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 320 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~~~~~~~vG~~~~vlve 320 (516)
.||||||+|||++|++++++++|..++|.+|.|+||||+++|+++|..++++|.++|.+++...+.|..++|+..+|||+
T Consensus 347 cgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVT 426 (547)
T KOG4355|consen 347 CGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYTDEIGELHRVLVT 426 (547)
T ss_pred ecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhcccHHHHHHHHHHHHHHHHhcCCcccccccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeeccccCc
Q 010162 321 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDD 377 (516)
Q Consensus 321 ~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~~~~~ 377 (516)
+.+.++.+++||+..|.+|+++.+...+|+++.|+|++++.++++|++++...+.++
T Consensus 427 Eva~Dklh~VgHnksYeQVLvp~~~~~mGt~vevrItsvgkfsm~gep~s~~~d~~p 483 (547)
T KOG4355|consen 427 EVAADKLHYVGHNKSYEQVLVPLEYCKMGTWVEVRITSVGKFSMIGEPASDQEDQTP 483 (547)
T ss_pred EeeccceeeeccccceeEEEeecchhhccceEEEEEEeeeeeeeeccccchhhhcCc
Confidence 988788789999999999999888888999999999999999999999988777766
No 19
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=1.2e-58 Score=494.61 Aligned_cols=358 Identities=34% Similarity=0.580 Sum_probs=302.5
Q ss_pred HHHHHHHhcCCC---cEEEEccccCcch-h-hhhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCC-CCCcc
Q 010162 2 DTLIAKCKSAKK---PLVVAGCVPQGSR-D-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKV 74 (516)
Q Consensus 2 ~~iIr~~k~~~~---~VVV~GC~a~~~~-~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~-~l~~~ 74 (516)
..+|+++++.++ +||||||||+..+ + ++++|++| |+|+.++..|++++++.. +........ ..+.+ .+|.+
T Consensus 56 ~~~i~~~~~~~~~~~~vvvgGc~a~~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~p~~ 133 (429)
T TIGR00089 56 RSRLGELAKLKKKNAKIVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNI-SKDVYEELPRP 133 (429)
T ss_pred HHHHHHHHHhCcCCCEEEEECcccccCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceeccc-cccchhccccc
Confidence 457788877665 8999999999975 4 56789999 899999999999998865 322111111 11111 12322
Q ss_pred c-CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 010162 75 R-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLN 151 (516)
Q Consensus 75 ~-~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~ 151 (516)
+ ....++||++|||||++|+||.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++
T Consensus 134 ~~~~~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~ 213 (429)
T TIGR00089 134 RSFGKTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLR 213 (429)
T ss_pred ccCCCeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHH
Confidence 2 23567899999999999999999999999999999999999999999999999999999999987643 45899999
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
++.+ ++ +..|+++++++|..+++++. ..|.+++++|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|
T Consensus 214 ~l~~-~~--g~~~i~~~~~~p~~i~~ell--~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~ 288 (429)
T TIGR00089 214 ELSK-ID--GIERIRFGSSHPDDVTDDLI--ELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIP 288 (429)
T ss_pred HHhc-CC--CCCEEEECCCChhhcCHHHH--HHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 8864 32 35789999999988888874 3445566679999999999999999999999999999999999999977
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHHh--hhh
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFT--PYL 308 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~~--~~~ 308 (516)
++.+.+|||+||||||+++|++|++|+++++++.+++|+|+|+||||+++|+ ++|++++++|.++|+++++++. +++
T Consensus 289 ~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~ 368 (429)
T TIGR00089 289 DAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNK 368 (429)
T ss_pred CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998 8999999999999999999864 789
Q ss_pred cCCCcEEEEEEEEEe-cCCceEEEeccCcEEEEECCC--CCCCCCeEEEEEEEeecceEEE
Q 010162 309 GMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFG 366 (516)
Q Consensus 309 ~~vG~~~~vlve~~~-~~~~~~~gr~~~~~~v~~~~~--~~~~G~~~~v~I~~~~~~~l~g 366 (516)
+++|++.+|+||+.. .+++.+.||+++|.+|++.+. ...+|++++|+|+++..++|+|
T Consensus 369 ~~~G~~~~vlve~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 429 (429)
T TIGR00089 369 KYVGKTLEVLVEGEEGKKEGELTGRTENYKPVVFEGGVGKNLIGKFVKVKITEAAEYSLIG 429 (429)
T ss_pred HhCCCEEEEEEEecccCCCCeEEEECCCCeEEEECCCCCcCCCCCEEEEEEEecccceeEC
Confidence 999999999998632 222257899999999999742 2358999999999999999876
No 20
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=3.7e-58 Score=488.72 Aligned_cols=347 Identities=32% Similarity=0.553 Sum_probs=292.0
Q ss_pred HHHHHHHhcCC--CcEEEEccccCcch-hhhhCCcce-EEcCCChhHHHHHHHHHhcCCceeec-----ccCCCCCCCCC
Q 010162 2 DTLIAKCKSAK--KPLVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLP 72 (516)
Q Consensus 2 ~~iIr~~k~~~--~~VVV~GC~a~~~~-~~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~-----~~~~~p~~~l~ 72 (516)
..+|+++|+.+ ++||||||||+..+ ++.++|+|| |+|+.++..|+++++....+...... ....+|.+++.
T Consensus 53 ~~~i~~~k~~~p~~~vvvgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 132 (414)
T TIGR01579 53 RRAIRRARRQNPTAKIIVTGCYAQSNPKELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEV 132 (414)
T ss_pred HHHHHHHHhhCCCcEEEEECCccccCHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccc
Confidence 35788887755 67999999999975 466789999 89999999999999765433221110 11112222211
Q ss_pred cccCCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc--CCCHHHHH
Q 010162 73 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILL 150 (516)
Q Consensus 73 ~~~~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~--~~~l~eLL 150 (516)
. ......++|++|||||++|+||.+|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.|. ...+.+|+
T Consensus 133 ~-~~~~~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll 211 (414)
T TIGR01579 133 A-FEGHTRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLL 211 (414)
T ss_pred c-cCCCeEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHH
Confidence 1 12346789999999999999999999999999999999999999999999999999999999998764 24688999
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 010162 151 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230 (516)
Q Consensus 151 ~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 230 (516)
+.+.+ ++ +..++|+++++|..+++++ +..|.+++++|+++++|+||+|+++|+.|||+++.+++.++++.+++..
T Consensus 212 ~~l~~-~~--~~~~ir~~~~~p~~~~~el--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~ 286 (414)
T TIGR01579 212 EQILQ-IP--GIKRIRLSSIDPEDIDEEL--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR 286 (414)
T ss_pred HHHhc-CC--CCcEEEEeCCChhhCCHHH--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 98863 33 3578999999999888887 4444556667999999999999999999999999999999999999977
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhh
Q 010162 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPY 307 (516)
Q Consensus 231 pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~ 307 (516)
||+.+.+|||+||||||+++|++|++|+++++++++++|+|+|+||||+++++ ++|.+++++|.++|+++++++ +++
T Consensus 287 ~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 366 (414)
T TIGR01579 287 PDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFL 366 (414)
T ss_pred CCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998 899999999999999999986 479
Q ss_pred hcCCCcEEEEEEEEEecCCceEEEeccCcEEEEECCC-CCCCCCeEEEEE
Q 010162 308 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKI 356 (516)
Q Consensus 308 ~~~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~-~~~~G~~~~v~I 356 (516)
++++|++.+|+||+.. ++ .+.||+++|.+|+|.++ ...+|++++|+|
T Consensus 367 ~~~~g~~~~vlve~~~-~~-~~~g~~~~~~~v~~~~~~~~~~g~~~~v~i 414 (414)
T TIGR01579 367 KKNIGKELEVLVEKEK-AG-VLTGYSEYYLKVKVESDKGVAAGELISVRI 414 (414)
T ss_pred HHhcCCEEEEEEEeCC-CC-eeEEECCCCcEEEeCCCCccCCCCEEEEEC
Confidence 9999999999999642 33 47899999999999643 234799999986
No 21
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=4.8e-58 Score=490.66 Aligned_cols=353 Identities=24% Similarity=0.424 Sum_probs=293.2
Q ss_pred HHHHHHhcCCCcEEEEccccCcchhhh-hCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccCCceE
Q 010162 3 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV 80 (516)
Q Consensus 3 ~iIr~~k~~~~~VVV~GC~a~~~~~~~-~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~~~~~ 80 (516)
..|+++++.+.+|||+||+|+..+++. .+|+|| |+|+.++..+++++........... . ...+.... ......+
T Consensus 65 ~~i~~~~~~~~~ivv~GC~a~~~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~ 140 (440)
T PRK14862 65 EAIGEALAENGKVIVTGCLGAKEDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDPF-V-DLVPPQGV--KLTPRHY 140 (440)
T ss_pred HHHHHHHhcCCCEEEECCcccCHHHHHhhCCCceEEECCCCHHHHHHHHHHhhccccccc-c-ccCcchhc--ccCCCcE
Confidence 456677665667999999999655554 479999 8999999999999876532111000 0 00000000 0124568
Q ss_pred EEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC------------CCHHH
Q 010162 81 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPI 148 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~------------~~l~e 148 (516)
+||++|||||++|+||++|.++|++|+||+++|++|++.+.+.|+++|+|+++|++.||.|.. ..+.+
T Consensus 141 a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~ 220 (440)
T PRK14862 141 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTD 220 (440)
T ss_pred EEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986631 35788
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 010162 149 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228 (516)
Q Consensus 149 LL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~ 228 (516)
|++.+.+ .+ .|+|+.++.|..+++++. ..|.+ ++.++++|||+||+|+++|+.|||+++.+++.++++.+++
T Consensus 221 Ll~~l~~-~~----~~~r~~~~~p~~~~dell--~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~ 292 (440)
T PRK14862 221 LCEALGE-LG----AWVRLHYVYPYPHVDEVI--PLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWRE 292 (440)
T ss_pred HHHHHHh-cC----CEEEEecCCCCcCCHHHH--HHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 8888764 32 389999888877766663 33344 6777899999999999999999999999999999999999
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--h
Q 010162 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--T 305 (516)
Q Consensus 229 ~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~ 305 (516)
+.|++.+.++||+||||||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|.++++++ +
T Consensus 293 ~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~ 372 (440)
T PRK14862 293 ICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAA 372 (440)
T ss_pred HCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 899999999999999999986 4
Q ss_pred hhhcCCCcEEEEEEEEEecCCceEEEeccCcEE-----EEECCCC-CCCCCeEEEEEEEeecceEEEEEE
Q 010162 306 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ-----VLVPSTG-NMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 306 ~~~~~vG~~~~vlve~~~~~~~~~~gr~~~~~~-----v~~~~~~-~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
++++++|++++|+||+...++ +.||+++|.+ |++.... ..+|++++|+|+++..++|+|+++
T Consensus 373 ~~~~~~G~~~~vlie~~~~~~--~~Gr~~~~~~~v~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 440 (440)
T PRK14862 373 RLQRKVGRTLQVLIDEVDEEG--AIGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGEVV 440 (440)
T ss_pred HHHHhcCCEEEEEEEEcCCCC--eEEECcccCccCCCceeccCCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 788999999999999754333 5899999997 7775322 247999999999999999999864
No 22
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=2.2e-57 Score=484.90 Aligned_cols=358 Identities=25% Similarity=0.458 Sum_probs=297.7
Q ss_pred HHHHHHHhcCCCcEEEEccccCcchh-h-hhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcc-cCC
Q 010162 2 DTLIAKCKSAKKPLVVAGCVPQGSRD-L-KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV-RRN 77 (516)
Q Consensus 2 ~~iIr~~k~~~~~VVV~GC~a~~~~~-~-~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~-~~~ 77 (516)
..+|+++++++++||||||||+..++ + +.+|+|| |+|+..+..+.+.+.....+...... ...+....|.. ...
T Consensus 56 ~~~i~~~~~~~~~vvvgGc~a~~~pee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 133 (430)
T TIGR01125 56 IDTIGELADAGKKVIVTGCLVQRYKEELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFK--SEIEMGEVPRILLTP 133 (430)
T ss_pred HHHHHHHHhcCCCEEEECCccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCcccc--cccccccccccccCC
Confidence 46789998889999999999999854 4 4689999 89998877777776553322111000 00100001111 123
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~--~~~l~eLL~~I~~ 155 (516)
..++||++|||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+|++.|.+
T Consensus 134 ~~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~ 213 (430)
T TIGR01125 134 RHYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK 213 (430)
T ss_pred CeEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999998653 2468999999864
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
++ +..|+|+.+++|..+++++. ..|.+++++|+++++|+||+|+++|+.|||+++.+++.++++.++++.|++.+
T Consensus 214 -~~--~i~~~r~~~~~p~~~~~ell--~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i 288 (430)
T TIGR01125 214 -VG--GIYWIRMHYLYPDELTDDVI--DLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVL 288 (430)
T ss_pred -cC--CccEEEEccCCcccCCHHHH--HHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 33 24689999999999988884 44456667799999999999999999999999999999999999999889999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCC
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEG 312 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG 312 (516)
.++||+||||||+++|++|++|+++++++.+++|+|+|+|||++++++ ++|++++++|+++|.++++++ .++++++|
T Consensus 289 ~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 368 (430)
T TIGR01125 289 RTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQEFVG 368 (430)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 899999999999999999875 47889999
Q ss_pred cEEEEEEEEEecC-CceEEEeccCcEE-----EEECCC--CCCCCCeEEEEEEEeecceEEE
Q 010162 313 RVERIWITEIAAD-GIHLVGHTKGYVQ-----VLVPST--GNMLGTSALVKITSVGRWSVFG 366 (516)
Q Consensus 313 ~~~~vlve~~~~~-~~~~~gr~~~~~~-----v~~~~~--~~~~G~~~~v~I~~~~~~~l~g 366 (516)
++.+|++|+..++ +..+.||+++|.+ |+|.++ ...+|++++|+|+++..++|+|
T Consensus 369 ~~~~vl~e~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 430 (430)
T TIGR01125 369 KKIEVLIDGYEPETNLLLIGRTYGQAPEVDGVVYVNGAKLNVKIGDILRVVITGTDEYDLWG 430 (430)
T ss_pred CEEEEEEEeccCCCCCcEEEECccCCcccCceEEEcCCcccCCCCCEEEEEEEEcccCeeeC
Confidence 9999999865332 1247899999997 777643 2248999999999999999876
No 23
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.3e-57 Score=483.92 Aligned_cols=356 Identities=31% Similarity=0.542 Sum_probs=301.5
Q ss_pred HHHHhc--CCCcEEEEccccCcch-hh--hhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcccCCc
Q 010162 5 IAKCKS--AKKPLVVAGCVPQGSR-DL--KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNK 78 (516)
Q Consensus 5 Ir~~k~--~~~~VVV~GC~a~~~~-~~--~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~~~~~ 78 (516)
++++|+ ++++|||+||||+.++ ++ +.+|+|| |+|+.++..+++++..... ... .|.+.....+...
T Consensus 83 ~~~~k~~~p~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~-----~~~---~~~~~~~~~~~~~ 154 (459)
T PRK14338 83 LQRLKRQRPDTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIY-----QLD---EPALPVADWSHPP 154 (459)
T ss_pred HHHHHhhCCCCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhcc-----ccc---cccccccccCCCc
Confidence 455555 3567999999999975 44 6899999 8999999999998854210 001 1211111112345
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHh
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE 156 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~I~~~ 156 (516)
.++|++|+||||++|+||.+|..+|+.|++++++|++|++.+.+.|+++|+|+|++++.||.+.. ..+.+|++.+.+
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~- 233 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE- 233 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-
Confidence 68999999999999999999999999999999999999999999999999999999999998642 348888888864
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
.+ +..++|+.+.+|..+++++. ..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.
T Consensus 234 ~~--gi~~ir~~~~~p~~i~~ell--~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~ 309 (459)
T PRK14338 234 IP--GLERLRFLTSHPAWMTDRLI--HAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLT 309 (459)
T ss_pred cC--CcceEEEEecChhhcCHHHH--HHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 32 34578888899999988874 344455567999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-C----CCHHHHHHHHHHHHHHHHHHh--hhhc
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K----VPSAVVKKRSRELTSVFEAFT--PYLG 309 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~----v~~~~~~eR~~~L~~l~~~~~--~~~~ 309 (516)
+|||+||||||++||++|++|+++++++.+++|.|+|+||||+++|+ + +|++++++|.+.|+++++++. +++.
T Consensus 310 ~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~ 389 (459)
T PRK14338 310 TDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNAR 389 (459)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 7 999999999999999999864 7899
Q ss_pred CCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeecccc
Q 010162 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 375 (516)
Q Consensus 310 ~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~~~ 375 (516)
++|++.+|+||+.. ++ .+.||+++|.+|+|.++...+|++++|+|+++..++|+|++++....+
T Consensus 390 ~~G~~~~vlve~~~-~~-~~~g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~~~ 453 (459)
T PRK14338 390 FLGQTVEVLVEGEA-KG-KWRGRTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELVASDAAA 453 (459)
T ss_pred hCCCEEEEEEEEcC-CC-eEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEeeccccc
Confidence 99999999998632 33 478999999999997543358999999999999999999998765543
No 24
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-56 Score=479.77 Aligned_cols=365 Identities=28% Similarity=0.444 Sum_probs=301.3
Q ss_pred HHHHHHHhcCC----CcEEEEccccCcc-h-hhhhCCcce-EEcCCChhHHHHHHHHHhcCCceeecccCCCCCCCCCcc
Q 010162 2 DTLIAKCKSAK----KPLVVAGCVPQGS-R-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV 74 (516)
Q Consensus 2 ~~iIr~~k~~~----~~VVV~GC~a~~~-~-~~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~~~~~~~~p~~~l~~~ 74 (516)
...|+++++.+ .+|+|+||+|+.+ + ++.+.|+|| |+|++++..+++++.... ..........++ ...+..
T Consensus 57 ~~~i~~~~~~~~~~~~~v~v~GC~a~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~ 133 (440)
T PRK14334 57 RSLLGELRKEKAQRPLVVGMMGCLAQLEEGQQMARKFGVDVLLGPGALTDIGKALEANE--RFWGLQFKDELH-DHIPPP 133 (440)
T ss_pred HHHHHHHHhhCcCCCcEEEEEcchhccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhc--cccccccccccc-cccccc
Confidence 34566765422 3589999999986 3 566778999 899999999998876421 100000000110 012222
Q ss_pred cCCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 010162 75 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 152 (516)
Q Consensus 75 ~~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~ 152 (516)
.....++||+|++|||++|+||.+|..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..+.+|++.
T Consensus 134 ~~~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~ 213 (440)
T PRK14334 134 PQGKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRL 213 (440)
T ss_pred cCCCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHH
Confidence 344678999999999999999999999999999999999999999999999999999999999987643 358888888
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+ +. ..++++.+.+|..+++++ +..+.+.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.++++.|+
T Consensus 214 l~~-~~---i~~ir~~~~~p~~i~~el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~ 287 (440)
T PRK14334 214 VGA-SG---IPRVKFTTSHPMNFTDDV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPD 287 (440)
T ss_pred HHh-cC---CcEEEEccCCcccCCHHH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Confidence 753 32 357899888999998887 444555566799999999999999999999999999999999999999888
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhc
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLG 309 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~ 309 (516)
+.+++|||+||||||+++|++|++|+.+++++++++|.|+|+||||+++++ ++|++++++|.++|.++++++ +++++
T Consensus 288 i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~ 367 (440)
T PRK14334 288 VVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNAR 367 (440)
T ss_pred cEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987 899999999999999999985 48999
Q ss_pred CCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCC-CCCCeEEEEEEEeecceEEEEEEeeccccC
Q 010162 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVIKILNQVD 376 (516)
Q Consensus 310 ~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~-~~G~~~~v~I~~~~~~~l~g~~i~~~~~~~ 376 (516)
++|++.+|+||+.++++..+.||+++|.+|++..+.. ..| +++|+|+++..++|+|++++....++
T Consensus 368 ~~G~~~~vlve~~~~~~~~~~g~t~~~~~v~~~~~~~~~~g-~~~v~i~~~~~~~l~g~~~~~~~~~~ 434 (440)
T PRK14334 368 WVGRTQEVLVRGDAKDAGFLEGHTRGNHPVLVPASQAPGPG-LYQVRIKQATPHMLYGEVVGAEAPAT 434 (440)
T ss_pred hCCCEEEEEEEeccCCCCeEEEECCCCcEEEEcCCCcccCc-EEEEEEEEccCceEEEEEecCCCccc
Confidence 9999999999975433235789999999999864322 345 99999999999999999988766554
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-45 Score=367.76 Aligned_cols=351 Identities=25% Similarity=0.425 Sum_probs=295.1
Q ss_pred cEEEEccccCcc-hh-hhhCCcce-EEcCCChhHHHHHHHHHhcCCcee-e-c-ccCCCCCCCCCc--ccCCceEEEEEe
Q 010162 14 PLVVAGCVPQGS-RD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR-L-L-HRKKLPALDLPK--VRRNKFVEILPI 85 (516)
Q Consensus 14 ~VVV~GC~a~~~-~~-~~~~p~vD-vvG~~~~~~i~~ll~~~~~g~~~~-~-~-~~~~~p~~~l~~--~~~~~~~a~V~i 85 (516)
+|.|-||||++. ++ +..-.-|| |.|++.+..+|.+|.-...|.... . + ..+.+. +..+ .......|||.|
T Consensus 149 ~v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetya--dv~pvr~~~~s~tAFvSi 226 (552)
T KOG2492|consen 149 RVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYA--DVQPVRVSSSSTTAFVSI 226 (552)
T ss_pred eEEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhc--ccceeeccCccchhHHHH
Confidence 688899999986 33 44434589 799999999999997665554321 1 1 111222 2222 234567899999
Q ss_pred CCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-----------------------
Q 010162 86 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----------------------- 142 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~----------------------- 142 (516)
+|||++-|+||++|..||+.|+||++.|++|++.|.++|+|++.|.|||+++|..+.
T Consensus 227 MRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552)
T KOG2492|consen 227 MRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552)
T ss_pred HhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeeccc
Confidence 999999999999999999999999999999999999999999999999999994321
Q ss_pred --CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHH
Q 010162 143 --GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 220 (516)
Q Consensus 143 --~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~ 220 (516)
+..|+.||+.+....+ .-++||.+.||.++++++.+|. ...+..|+.+|+|.||+|.++|+.|.|+|+.+.|.
T Consensus 307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~li--~~rdnickqihlPAqSgds~vLE~mrRgysreayl 381 (552)
T KOG2492|consen 307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLELI--RDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYL 381 (552)
T ss_pred CCCccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHHHHHH--HhCcchhheeeccccCCchHHHHHHHccCChHhhh
Confidence 1358999999987655 3688888899999999986654 56677899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC-C-CCCHHHHHHHHHHHH
Q 010162 221 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K-KVPSAVVKKRSRELT 298 (516)
Q Consensus 221 ~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~-~-~v~~~~~~eR~~~L~ 298 (516)
+.+..++..+||+.+..|||.||-|||++|+++|+.++++.+.+.+..|.|+-+.+|.+|.- . ++|++++.+|..+|.
T Consensus 382 ~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li 461 (552)
T KOG2492|consen 382 ELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELI 461 (552)
T ss_pred hHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 4 899999999999999
Q ss_pred HHHHH--HhhhhcCCCcEEEEEEEEEec-CCceEEEeccCcEEEEECC--------C----CCCCCCeEEEEEEEeecce
Q 010162 299 SVFEA--FTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPS--------T----GNMLGTSALVKITSVGRWS 363 (516)
Q Consensus 299 ~l~~~--~~~~~~~vG~~~~vlve~~~~-~~~~~~gr~~~~~~v~~~~--------~----~~~~G~~~~v~I~~~~~~~ 363 (516)
..+.+ +..+..++|.+.-|++|+.++ ....++||+++|..+.|+. + ...+|+++.|+|+.+..-.
T Consensus 462 ~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~~a~~~~~~~~~~r~~~~igd~~~v~i~~a~~~~ 541 (552)
T KOG2492|consen 462 TFFREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQT 541 (552)
T ss_pred HHHHHHHHHHhccCccccceeeeechhhhhHHHHhcccCCCeEEEechHhhcCCCCCCceeccCcccceeeeeehhhhhh
Confidence 99986 458999999999999998653 2224789999999998861 1 1358999999999998888
Q ss_pred EEEEEEee
Q 010162 364 VFGEVIKI 371 (516)
Q Consensus 364 l~g~~i~~ 371 (516)
+.|..+..
T Consensus 542 l~g~~lai 549 (552)
T KOG2492|consen 542 LKGQLLGQ 549 (552)
T ss_pred hhcchhhc
Confidence 88876543
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=9.8e-34 Score=307.83 Aligned_cols=265 Identities=17% Similarity=0.213 Sum_probs=200.9
Q ss_pred HHHHHHhc--CCCcEEEEccccCcch-h-hhhCCcce--EEcCCChhHHHHHHHHHhcCC---ce---e---------e-
Q 010162 3 TLIAKCKS--AKKPLVVAGCVPQGSR-D-LKELEGVS--IVGVQQIDRVVEVVEETLKGH---EV---R---------L- 60 (516)
Q Consensus 3 ~iIr~~k~--~~~~VVV~GC~a~~~~-~-~~~~p~vD--vvG~~~~~~i~~ll~~~~~g~---~~---~---------~- 60 (516)
++++.+|+ |+.+||+||.+|+..+ + +.+.|++| |.|++| ..++++++....|. .. + .
T Consensus 81 ~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~ 159 (497)
T TIGR02026 81 ETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIV 159 (497)
T ss_pred HHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEE
Confidence 45565654 5889999999999864 4 56789999 467665 69999998876664 11 0 0
Q ss_pred -c-ccCCCCCCC-CCcc------c------CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh-CC
Q 010162 61 -L-HRKKLPALD-LPKV------R------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DG 124 (516)
Q Consensus 61 -~-~~~~~p~~~-l~~~------~------~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~-~G 124 (516)
. ......+++ +++. . .....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|
T Consensus 160 ~~~~~~~i~dLd~~~P~~~l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~g 239 (497)
T TIGR02026 160 ETLAAPMIQDLDVYRPDWELVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHG 239 (497)
T ss_pred eCCCCCCccccccCCCCcccCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcC
Confidence 0 000011111 1110 0 01123568899999999999999887778899999999999999976 69
Q ss_pred CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEE-eecCCcch--HHHHHHHHHHHcCCCCccEEEecccC
Q 010162 125 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI-GMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQS 201 (516)
Q Consensus 125 vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri-~~~~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQS 201 (516)
++.|.|+|++++... + .+.++++++.+.-+ ..+++ .+++++.+ ++++ +..+.++| |.++.+|+||
T Consensus 240 v~~~~~~Dd~f~~~~-~---~~~~l~~~l~~~~~----l~i~w~~~~r~~~i~~d~el--l~~l~~aG--~~~v~iGiES 307 (497)
T TIGR02026 240 VGFFILADEEPTINR-K---KFQEFCEEIIARNP----ISVTWGINTRVTDIVRDADI--LHLYRRAG--LVHISLGTEA 307 (497)
T ss_pred CCEEEEEecccccCH-H---HHHHHHHHHHhcCC----CCeEEEEecccccccCCHHH--HHHHHHhC--CcEEEEcccc
Confidence 999999998766432 1 36788888764311 11222 23455444 4555 33444454 8899999999
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc
Q 010162 202 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 202 gsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.+++++++.++.|+|+||||+++
T Consensus 308 ~~~~~L~~~~K~~t~~~~~~ai~~l~~~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 308 AAQATLDHFRKGTTTSTNKEAIRLLRQH--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred C
Q 010162 282 M 282 (516)
Q Consensus 282 ~ 282 (516)
.
T Consensus 386 ~ 386 (497)
T TIGR02026 386 E 386 (497)
T ss_pred H
Confidence 3
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=6.3e-33 Score=299.94 Aligned_cols=261 Identities=20% Similarity=0.260 Sum_probs=190.1
Q ss_pred HHHHHHhc--CCCcEEEEccccCcchh--hhhCCcce-E-EcCCChhHHHHHHHHHh----cCCcee-------eccc-C
Q 010162 3 TLIAKCKS--AKKPLVVAGCVPQGSRD--LKELEGVS-I-VGVQQIDRVVEVVEETL----KGHEVR-------LLHR-K 64 (516)
Q Consensus 3 ~iIr~~k~--~~~~VVV~GC~a~~~~~--~~~~p~vD-v-vG~~~~~~i~~ll~~~~----~g~~~~-------~~~~-~ 64 (516)
++++.+|+ ++.+||+||++++..++ ++..|.+| | .|+++ ..+.++++... .|-..+ .... .
T Consensus 86 ~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~~~i~Gi~~r~~~g~~~~~~~~~ 164 (472)
T TIGR03471 86 KTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPLAEIDGLSYRGKDGKIVHNPDRP 164 (472)
T ss_pred HHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCChhcCCceEEEcCCCeEEeCCCCC
Confidence 45666665 46789999999998754 56678999 4 56655 57888774310 000000 0000 0
Q ss_pred CCCCCC-CCcc----------------cCCceEEEEEeCCCCCCCCcCcccCccC-C-CcCCCCHHHHHHHHHHHHhC--
Q 010162 65 KLPALD-LPKV----------------RRNKFVEILPINVGCLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIAD-- 123 (516)
Q Consensus 65 ~~p~~~-l~~~----------------~~~~~~a~V~isrGC~~~CsFC~ip~~r-G-~~rsr~~e~Iv~EI~~L~~~-- 123 (516)
...+++ +|.+ ......+.|.+|||||++|+||.++... | ++|.++++.|++|++.+.+.
T Consensus 165 ~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~ 244 (472)
T TIGR03471 165 MIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFP 244 (472)
T ss_pred CccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcC
Confidence 011111 1110 0112345789999999999999988543 4 47899999999999999886
Q ss_pred CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCC
Q 010162 124 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 203 (516)
Q Consensus 124 GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgs 203 (516)
|+++|+|.|++++.. .+ .+.++++.+.+ .+ ..|.. ... ..+++++ +..|.+++ |.++++|+||+|
T Consensus 245 ~~~~i~f~Dd~f~~~-~~---~~~~l~~~l~~-~~---i~~~~--~~~-~~~~~e~--l~~l~~aG--~~~v~iGiES~s 309 (472)
T TIGR03471 245 EVREFFFDDDTFTDD-KP---RAEEIARKLGP-LG---VTWSC--NAR-ANVDYET--LKVMKENG--LRLLLVGYESGD 309 (472)
T ss_pred CCcEEEEeCCCCCCC-HH---HHHHHHHHHhh-cC---ceEEE--Eec-CCCCHHH--HHHHHHcC--CCEEEEcCCCCC
Confidence 889999988766532 22 25677777643 22 22321 122 2345555 34445554 889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc
Q 010162 204 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 204 d~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.+++++.++++.++|+||||+++
T Consensus 310 ~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 310 QQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCcHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999985
No 28
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-33 Score=300.64 Aligned_cols=197 Identities=21% Similarity=0.351 Sum_probs=157.9
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc-CCCCHHHHHHHHHHHHhC-CCcEEE--EeecCCCCCCCC-------------
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRD------------- 141 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~EI~~L~~~-GvkeI~--l~g~n~~~yg~d------------- 141 (516)
..++|+++|||+++|+||+++..+|+. +||++++|++|++.+.+. |+++++ +.|++.+.||.+
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 347899999999999999999999996 999999999999999987 898875 567889999741
Q ss_pred ----------c---CCCHHHHHHHHHHhCCCCCCceEEEee-cCCcch-----HHHHHHHHHHHcCCCCccEEEecccCC
Q 010162 142 ----------I---GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFI-----LEHLKEIAEVLRHPCVYSFLHVPVQSG 202 (516)
Q Consensus 142 ----------~---~~~l~eLL~~I~~~i~~~~~~~iri~~-~~P~~i-----~~~l~eL~~l~~~~~~~~~i~iGlQSg 202 (516)
. ...+.+||++|. .++ +..++++++ ++.+.+ ++.+.+|.+ . .++.++++|+||+
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~-~l~--gvkrv~isSGIR~D~l~~~~~~~~l~eL~~---~-~vsg~L~IapESg 444 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVR-KLP--GVKKVFIRSGIRYDYLLHDKNDEFFEELCE---H-HVSGQLKVAPEHI 444 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHh-ccC--CceEEEeecceeccccccCCcHHHHHHHHH---H-hcCCCceeCcCCC
Confidence 0 124788999886 354 346766665 333221 123333332 2 2356899999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHhCCC--C--EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPG--M--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 203 sd~vLk~MnR~~t~e~~~~~I~~lr~~~pG--i--~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
|+++|+.|+|+ +.+.+.+.++.+++..+. + .+.++||+||||||++||++|++|+++++++.+++|.|+|+|||+
T Consensus 445 Sd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~ 523 (620)
T PRK00955 445 SDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTL 523 (620)
T ss_pred ChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcc
Confidence 99999999998 667777777666665544 3 489999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 010162 279 AARMK 283 (516)
Q Consensus 279 a~~~~ 283 (516)
++.|.
T Consensus 524 At~My 528 (620)
T PRK00955 524 STTMY 528 (620)
T ss_pred hhhcc
Confidence 99986
No 29
>PRK05481 lipoyl synthase; Provisional
Probab=99.98 E-value=3.3e-31 Score=269.02 Aligned_cols=212 Identities=15% Similarity=0.203 Sum_probs=176.5
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
....+||.+|+||+++|+||++|..+| +++++++|+++++.+.+.|+++|+|+|+|...+.......+.++++.|.+.
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~ 128 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIREL 128 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhh
Confidence 356789999999999999999999875 789999999999999999999999999986543210112588999998765
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
.+. .++++.+.+|....+.+.++. .++ ...+....++ ++++|++|+|+++.++++++++.+++++||+.++
T Consensus 129 ~p~---irI~~l~~~~~~~~e~L~~l~---~ag--~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~ 199 (289)
T PRK05481 129 NPG---TTIEVLIPDFRGRMDALLTVL---DAR--PDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPTK 199 (289)
T ss_pred CCC---cEEEEEccCCCCCHHHHHHHH---hcC--cceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 542 346665555554455554433 333 4455666676 5899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc-cCCCCCHHHHHHHHHHHHHHHHHHh
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFEAFT 305 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~-~~~~v~~~~~~eR~~~L~~l~~~~~ 305 (516)
+++|+|| |||++||.+|++++++++++.+++|+|+| |++ .| ++|++++++|+++|++++.++-
T Consensus 200 t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-~v~~~~k~~r~~~l~~~~~~i~ 263 (289)
T PRK05481 200 SGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-PVERYVTPEEFDEYKEIALELG 263 (289)
T ss_pred eeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-CCCCcCCHHHHHHHHHHHHHcC
Confidence 9999999 99999999999999999999999999999 788 66 9999999999999999998764
No 30
>PRK01254 hypothetical protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=281.97 Aligned_cols=197 Identities=20% Similarity=0.341 Sum_probs=170.9
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHhC--CCcEEE--EeecCCCCCCC---C---------
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 141 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~~--GvkeI~--l~g~n~~~yg~---d--------- 141 (516)
..++|+|+|||+++|+||+++..+|+ .+||++++|++|++.+.+. |+++++ |+|+|.+.||. +
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 34899999999999999999999999 5999999999999999974 999999 99999999996 2
Q ss_pred -----------cC---CCHHHHHHHHHHhCCCCCCceEEEeecCCcchH---HHHHHHHHHHcCCCCccEEEecccCCCH
Q 010162 142 -----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL---EHLKEIAEVLRHPCVYSFLHVPVQSGSD 204 (516)
Q Consensus 142 -----------~~---~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~---~~l~eL~~l~~~~~~~~~i~iGlQSgsd 204 (516)
.. ..+.+||++|. +++ +..++++.+..|.++. +++ +.++.+ ..++.++++++||+|+
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr-~Ip--GVKkVrI~SgiR~Dl~l~d~el--Ieel~~-~hV~g~LkVppEH~Sd 525 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRAR-DLK--GIKKILIASGVRYDLAVEDPRY--VKELVT-HHVGGYLKIAPEHTEE 525 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHH-hCC--CceEEEEEcCCCccccccCHHH--HHHHHH-hCCccccccccccCCH
Confidence 11 24788999986 354 4678999999887773 444 333334 4678899999999999
Q ss_pred HHHHhcCCC--CCHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC---CCc
Q 010162 205 AVLSAMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GTP 278 (516)
Q Consensus 205 ~vLk~MnR~--~t~e~~~~~I~~lr~~~p-Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p---GTp 278 (516)
++|+.|+|+ ++.+++.++++++++..| ++.+.++||+||||||++||+++++|+++++++...+..|+|.| ||.
T Consensus 526 ~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~ 605 (707)
T PRK01254 526 GPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATT 605 (707)
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchH
Confidence 999999998 789999999999999887 68899999999999999999999999999999999999999999 666
Q ss_pred ccc
Q 010162 279 AAR 281 (516)
Q Consensus 279 a~~ 281 (516)
+|.
T Consensus 606 MYy 608 (707)
T PRK01254 606 MYY 608 (707)
T ss_pred HHh
Confidence 654
No 31
>PRK07094 biotin synthase; Provisional
Probab=99.94 E-value=7.8e-26 Score=233.20 Aligned_cols=198 Identities=16% Similarity=0.282 Sum_probs=159.6
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCC-cCC-CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~-~rs-r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
..+.|++|+||+++|+||..+...+. .+. .++++|+++++.+.+.|+++|.|+|++...+..+ .+.++++.+.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~---~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDE---KIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHH---HHHHHHHHHHcc
Confidence 35679999999999999999876654 233 4899999999999999999999998754444332 367777777643
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
.+ ..+.++ +...+++. +..+.+++ +.++.+|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 ~~----l~i~~~---~g~~~~e~--l~~Lk~aG--~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 LD----VAITLS---LGERSYEE--YKAWKEAG--ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred CC----ceEEEe---cCCCCHHH--HHHHHHcC--CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 11 233332 22233333 33444444 88999999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHH
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~e 292 (516)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||+++.+..+.+...+
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~ 238 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLK 238 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999987666555433
No 32
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.94 E-value=4.2e-26 Score=237.85 Aligned_cols=238 Identities=17% Similarity=0.240 Sum_probs=177.8
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCC-----cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~-----~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I 153 (516)
...||.| .-|+.+|.||.++...+. +..+..++|..|++.+....++.|+|.|++.+....+ .+.++++.+
T Consensus 7 ~~lYiHi-PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~~---~l~~ll~~i 82 (353)
T PRK05904 7 KHLYIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQ---LLDILLSTI 82 (353)
T ss_pred eEEEEEe-CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCHH---HHHHHHHHH
Confidence 3456666 459999999998764221 1222456666666554334577888888655554433 367788877
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+.++. ...+.+. .+|+.++++. +..+.+.+ +++|++|+||++|++|+.|+|+++.+++.++++.++++ |+
T Consensus 83 ~~~~~~--~~eitiE-~nP~~lt~e~--l~~lk~~G--~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~ 153 (353)
T PRK05904 83 KPYVDN--NCEFTIE-CNPELITQSQ--INLLKKNK--VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GI 153 (353)
T ss_pred HHhcCC--CCeEEEE-eccCcCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 665532 2455554 7999888766 44444444 89999999999999999999999999999999999999 88
Q ss_pred E-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010162 234 Q-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGME 311 (516)
Q Consensus 234 ~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~~~~~~~v 311 (516)
. ++.|+|+|+||||.++++++++++.+++++++.++.|+++|||+++++. .++++...++...+.++.++.-+.
T Consensus 154 ~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~---- 229 (353)
T PRK05904 154 YNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYK---- 229 (353)
T ss_pred CcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCc----
Confidence 5 9999999999999999999999999999999999999999999999876 578888888887777766543221
Q ss_pred CcEEEEEEEEEec-CCceEEEeccCcEE
Q 010162 312 GRVERIWITEIAA-DGIHLVGHTKGYVQ 338 (516)
Q Consensus 312 G~~~~vlve~~~~-~~~~~~gr~~~~~~ 338 (516)
++.|..+++ ++ ...-|+.+||.
T Consensus 230 ----~yeisnfa~~~~-~~~~hn~~yw~ 252 (353)
T PRK05904 230 ----RYEVSNWTNNFK-YISKHNLAYWR 252 (353)
T ss_pred ----EEechhhcCCCC-ccccchHhHhC
Confidence 244555554 33 33556776763
No 33
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.94 E-value=2.3e-25 Score=239.69 Aligned_cols=272 Identities=23% Similarity=0.341 Sum_probs=192.2
Q ss_pred CcEEEEccccCcch-h-hhhCCcce--EEcCCChhHHHHHHHHHhcCCce--------ee-----c----ccCCCCCCCC
Q 010162 13 KPLVVAGCVPQGSR-D-LKELEGVS--IVGVQQIDRVVEVVEETLKGHEV--------RL-----L----HRKKLPALDL 71 (516)
Q Consensus 13 ~~VVV~GC~a~~~~-~-~~~~p~vD--vvG~~~~~~i~~ll~~~~~g~~~--------~~-----~----~~~~~p~~~l 71 (516)
+.|++||.+++..+ . +...| +| ++|+++ ..+.++++....+... +. . ...+.|..++
T Consensus 103 ~~v~~GG~~~t~~~~~~~~~~~-~D~iv~GeGE-~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (490)
T COG1032 103 PLVVVGGPEATENPEPLLDFGP-ADIIVIGEGE-ETLPELLEALEEGEDDPRVPGLALPSFEEIVYDQDLDDVPIPAYDL 180 (490)
T ss_pred CeEEecCCCcCCCcHHHHhhcC-CCEEEEcCch-HHHHHHHHHHhccccccccCccccCChhhcccccccccCCccceee
Confidence 45899999999753 3 44444 77 466665 5899999876554321 00 0 0011121111
Q ss_pred ---------CcccC-CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC
Q 010162 72 ---------PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 141 (516)
Q Consensus 72 ---------~~~~~-~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d 141 (516)
|.... .....+|+++||||++|+||.++... +.|+++++++++|++.+++.|.+++.+..+|.+.|+..
T Consensus 181 ~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~ 259 (490)
T COG1032 181 VDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSP 259 (490)
T ss_pred cccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCc
Confidence 11111 23357899999999999999998876 68999999999999999999999988777788888775
Q ss_pred c--C-CCHHHHHHHHHHhCCCCCCceEEEe--ecCCcchH-HHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCC
Q 010162 142 I--G-VNLPILLNAIVAELPPDGSTMLRIG--MTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 215 (516)
Q Consensus 142 ~--~-~~l~eLL~~I~~~i~~~~~~~iri~--~~~P~~i~-~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t 215 (516)
. . ..+..+...+.+... .......+. .++++.++ +.+.. .+... ++.++.+|+||+|+++|+.|+|+++
T Consensus 260 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~~~~~~--~~~~~--g~~~~~iG~Esgs~~~l~~~~k~~~ 334 (490)
T COG1032 260 ALNDEKRFELLSLELIERGL-RKGCRVHISAPSLRADTVTDEELLK--LLREA--GLRRVYIGIESGSEELLKKINKGIT 334 (490)
T ss_pred cccchhhcccchHHHHHHhc-ccCceeeeeccccCchhcCHHHHHH--HHhhC--CCcceEEeccCCCHHHHHHHhCCCC
Confidence 2 1 122222223332211 111222332 34666665 44422 22233 3789999999999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH---HHHHHhcCCC-eEEEEEeeecCCCccccCCCCCHHHH
Q 010162 216 LSDFRT-VVDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKEYKFP-QVHISQFYPRPGTPAARMKKVPSAVV 290 (516)
Q Consensus 216 ~e~~~~-~I~~lr~~~pGi~i~td~IvGfPGETeedf~et---l~fi~el~~d-~v~if~~sp~pGTpa~~~~~v~~~~~ 290 (516)
.++..+ +++.+++. ++.+..++|+|+||||++|+.+| ++++++++.. .+.++.|+|.|||+++.+.+......
T Consensus 335 ~~~~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~~~~~ 412 (490)
T COG1032 335 TEEVLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLENELL 412 (490)
T ss_pred hHHHHHHHHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcccccchhh
Confidence 999995 99999999 99999999999999999999999 7888888885 89999999999999999875544444
Q ss_pred HHHH
Q 010162 291 KKRS 294 (516)
Q Consensus 291 ~eR~ 294 (516)
.++.
T Consensus 413 ~~~~ 416 (490)
T COG1032 413 KRRF 416 (490)
T ss_pred hhhh
Confidence 4443
No 34
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.94 E-value=5.4e-25 Score=231.58 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=174.6
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCC-CcC-CC----CHHHHHHHHHHHHhC------CCcEEEEeecCCCCCCCCcCCCH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARG-HLG-SY----TVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNL 146 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG-~~r-sr----~~e~Iv~EI~~L~~~------GvkeI~l~g~n~~~yg~d~~~~l 146 (516)
...||.| .-|+++|+||.++...+ ..+ +. .++.+.+|++...+. .++.|+|.|++.+....+ .+
T Consensus 3 ~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~---~l 78 (375)
T PRK05628 3 FGVYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAE---GL 78 (375)
T ss_pred eEEEEEe-CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHH---HH
Confidence 3457777 46999999999876533 222 23 378899999876653 367788877655544433 37
Q ss_pred HHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHH
Q 010162 147 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 226 (516)
Q Consensus 147 ~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~l 226 (516)
.++++.+.+.++......+.+ .++|..++++. +..+.+.+ +++|++|+||+|+++|+.|+|+++.+++.++++.+
T Consensus 79 ~~ll~~i~~~~~~~~~~e~t~-e~~p~~i~~e~--l~~l~~~G--~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l 153 (375)
T PRK05628 79 ARVLDAVRDTFGLAPGAEVTT-EANPESTSPEF--FAALRAAG--FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREA 153 (375)
T ss_pred HHHHHHHHHhCCCCCCCEEEE-EeCCCCCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888766544222223333 47899888776 33444444 89999999999999999999999999999999999
Q ss_pred HHhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC------CCCHHHHHHHHHHHHH
Q 010162 227 IELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTS 299 (516)
Q Consensus 227 r~~~pGi~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~------~v~~~~~~eR~~~L~~ 299 (516)
+++ |+. +++|+|+|+||||.+++.++++++.+++++++.+|+++++||||+++.. .+++++..++...+.+
T Consensus 154 ~~~--g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (375)
T PRK05628 154 RAA--GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADA 231 (375)
T ss_pred HHc--CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHH
Confidence 999 886 9999999999999999999999999999999999999999999998752 3455566666655555
Q ss_pred HHHHHhhhhcCCCcEEEEEEEEEecCCceEEEeccCcEE
Q 010162 300 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 338 (516)
Q Consensus 300 l~~~~~~~~~~vG~~~~vlve~~~~~~~~~~gr~~~~~~ 338 (516)
..++. |. ..+.+..+.+++ ....|+.+||.
T Consensus 232 ~l~~~-------G~-~~ye~s~fa~~~-~~~~hn~~yw~ 261 (375)
T PRK05628 232 RLSAA-------GF-DWYEVSNWARPG-GECRHNLGYWR 261 (375)
T ss_pred HHHHc-------CC-CeeeeccccCCC-cccccchhhcC
Confidence 44332 21 123454555444 24556666663
No 35
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.93 E-value=4.6e-24 Score=219.64 Aligned_cols=287 Identities=23% Similarity=0.294 Sum_probs=214.0
Q ss_pred ceEEEEEeCCCCCCC----CcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeec-CCCCCCCCcC---------
Q 010162 78 KFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDIG--------- 143 (516)
Q Consensus 78 ~~~a~V~isrGC~~~----CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-n~~~yg~d~~--------- 143 (516)
...+-|+++|||+++ ||||..|.. |....|++|+|++||+.|++.|++.+.|.-| |+++|+.+..
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 456789999999976 999999876 8889999999999999999999999999865 8888876521
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEeecCCcchH---HHHHHHHH-HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHH
Q 010162 144 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL---EHLKEIAE-VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 219 (516)
Q Consensus 144 ~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~---~~l~eL~~-l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~ 219 (516)
..+.+|.+.+....+ ....+++...||..+. ++..++.+ +.+.+.--+-..+|+||+|++|.+..|-..+.|++
T Consensus 261 ealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEv 338 (560)
T COG1031 261 EALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEV 338 (560)
T ss_pred HHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHH
Confidence 124555555554333 4577888888887763 33333333 33333335678999999999999999999999999
Q ss_pred HHHHHHHHHh--------CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEEeeecCCCccccCC-CC
Q 010162 220 RTVVDTLIEL--------VPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMK-KV 285 (516)
Q Consensus 220 ~~~I~~lr~~--------~pGi~i~td~IvGfPGETeedf~etl~fi~el-----~~d~v~if~~sp~pGTpa~~~~-~v 285 (516)
+++++.+.+. +|-+....+||+|+||||.|+|+.+.+|++++ -+.+++|-+..++||||++.+. ..
T Consensus 339 l~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~~~ 418 (560)
T COG1031 339 LEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGKKK 418 (560)
T ss_pred HHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhhhHH
Confidence 9999999986 34456789999999999999999999999988 3568999999999999999663 22
Q ss_pred CHHHHHHHHHHHHHHHH-HHh----hhhcCCCcEEE-EEEEEEecCCceEEEeccCcEEEEECCC-CCCCCCeEEEEEEE
Q 010162 286 PSAVVKKRSRELTSVFE-AFT----PYLGMEGRVER-IWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITS 358 (516)
Q Consensus 286 ~~~~~~eR~~~L~~l~~-~~~----~~~~~vG~~~~-vlve~~~~~~~~~~gr~~~~~~v~~~~~-~~~~G~~~~v~I~~ 358 (516)
.++. ++++...++... ++. +.--..|++++ |.+|-.. ++ ..+||..+.+++.+--+ ....|.+++|.|++
T Consensus 419 ~~kh-k~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~~-~~-~tfgRQ~GSYPllvgi~~~~~~g~~~Dv~vvd 495 (560)
T COG1031 419 AEKH-KKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVYE-GG-LTFGRQLGSYPLLVGIPGRLELGRYVDVVVVD 495 (560)
T ss_pred HHHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCceeeeEEEEEec-CC-ceeecccCCcceEeeccccccCCceEEEEEec
Confidence 2111 222222222211 221 23335698875 7776542 33 47899999888776322 34589999999999
Q ss_pred eecceEEEEEEe
Q 010162 359 VGRWSVFGEVIK 370 (516)
Q Consensus 359 ~~~~~l~g~~i~ 370 (516)
++.+++.|....
T Consensus 496 hG~RSVt~ip~p 507 (560)
T COG1031 496 HGARSVTAIPVP 507 (560)
T ss_pred cCcceeeecccc
Confidence 999999997654
No 36
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.93 E-value=1.7e-24 Score=220.30 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=158.2
Q ss_pred CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 76 ~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.....+|+.+++||+++|+||+++..+|+.++ ++++++++++.+.+.|+++|+|+++|...|.......+.+++++|.+
T Consensus 60 ~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 60 NHGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIRE 138 (302)
T ss_pred CCCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHh
Confidence 34567899999999999999999988887765 57999999999999999999999987765532112358999999876
Q ss_pred hCCCCCCceEEEeecCCcch-HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 156 ELPPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i-~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
..+. ..+++ +.|+.. +.+. +..+..++ ...+...+|+. +++++.|+|+++.++++++++.+++.+||+.
T Consensus 139 ~~p~---i~Iev--l~~d~~g~~e~--l~~l~~aG--~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~ 208 (302)
T TIGR00510 139 KLPN---IKIET--LVPDFRGNIAA--LDILLDAP--PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLP 208 (302)
T ss_pred cCCC---CEEEE--eCCcccCCHHH--HHHHHHcC--chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 4442 23444 444322 2222 33344444 56688889987 8899999999999999999999999999999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee-e-cCCCccccCC
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-P-RPGTPAARMK 283 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~s-p-~pGTpa~~~~ 283 (516)
+.+++|+|| |||++|+.++++++++++++.+.+++|. | .+++|..++.
T Consensus 209 ~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~ 258 (302)
T TIGR00510 209 TKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV 258 (302)
T ss_pred ecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC
Confidence 999999999 9999999999999999999999999976 5 6778877664
No 37
>PRK12928 lipoyl synthase; Provisional
Probab=99.93 E-value=1.7e-24 Score=219.70 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=158.8
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
....+||.+++||+++|+||+++. |+..++++++++++++.+.+.|+++|+|+|++...+.......+.++++.|.+.
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~ 135 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRAR 135 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhc
Confidence 456789999999999999999987 556788999999999999999999999999765333211112478999998754
Q ss_pred CCCCCCceEEEeecCCcch---HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 157 LPPDGSTMLRIGMTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i---~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ .+++..+.|+.+ .+.+ ..+..++ ...+..++|+ ++++++.|+|+++.+++++.++.+++..|++
T Consensus 136 ~p-----~~~I~~ltp~~~~~~~e~L---~~l~~Ag--~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i 204 (290)
T PRK12928 136 NP-----GTGIEVLTPDFWGGQRERL---ATVLAAK--PDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDI 204 (290)
T ss_pred CC-----CCEEEEeccccccCCHHHH---HHHHHcC--chhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCc
Confidence 33 235555566543 2333 3444444 3445556786 6999999999999999999999999997779
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGTPAARMKKVPSAVVKKRSRELTSVFEA 303 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp--~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~ 303 (516)
.+.++||+|| |||++|+.++++++++++++.+++|+|.+ ..+.|..++. ++ +.++++.+...+
T Consensus 205 ~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~--~~----~~f~~~~~~~~~ 269 (290)
T PRK12928 205 PTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYW--TP----EEFEALGQIARE 269 (290)
T ss_pred eecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeecc--CH----HHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999986 5555555442 22 234555555443
No 38
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=2e-24 Score=227.37 Aligned_cols=193 Identities=20% Similarity=0.320 Sum_probs=155.4
Q ss_pred EEEEEeCCCCCCCCcCcccCcc--CCCcCCCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 80 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
..||.|-- |+++|+||.++.. ++..+.+.++.+++|++.+... +++.|+|.|++.+....+ .+.++++.+.
T Consensus 3 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~---~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAE---QLERLLTAIH 78 (377)
T ss_pred eEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHH---HHHHHHHHHH
Confidence 46888864 9999999998754 3444566799999999876554 567777776544433332 4788888887
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
+.++......+.+ .++|+.++++. +..+.+.+ ++++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.
T Consensus 79 ~~~~~~~~~eit~-e~~p~~l~~e~--l~~l~~~G--~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~~ 151 (377)
T PRK08599 79 RNLPLSGLEEFTF-EANPGDLTKEK--LQVLKDSG--VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GFD 151 (377)
T ss_pred HhCCCCCCCEEEE-EeCCCCCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCC
Confidence 6654322234444 38998888776 44444554 89999999999999999999999999999999999999 885
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 235 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 235 -i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
+..|+|+|+||||.+++.++++++.+++++++.+|+++|+|||++++..
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~ 201 (377)
T PRK08599 152 NISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLM 201 (377)
T ss_pred cEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHH
Confidence 8999999999999999999999999999999999999999999998653
No 39
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1e-23 Score=223.65 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=154.4
Q ss_pred eEEEEEeCCCCCCCCcCcccCccC-CC-cCC-------CCHHHHHHHHHHHHhC--CCcEEEEeecCCCCCCCCcCCCHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHAR-GH-LGS-------YTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLP 147 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~r-G~-~rs-------r~~e~Iv~EI~~L~~~--GvkeI~l~g~n~~~yg~d~~~~l~ 147 (516)
...||.| .-|+.+|.||.++... |. .+. .-++.+++|++..... +++.|+|.|++.+....+ .+.
T Consensus 11 ~~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~---~l~ 86 (400)
T PRK07379 11 TSAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVE---QLE 86 (400)
T ss_pred cEEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHH---HHH
Confidence 3567777 6699999999997532 21 111 1367888898865432 578888888655544333 378
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 010162 148 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 227 (516)
Q Consensus 148 eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr 227 (516)
++++.+.+.++......+++. ++|..++++. +..+.+.+ +++|++|+||+||++|+.|+|+|+.+++.++++.++
T Consensus 87 ~ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~--l~~l~~~G--vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~ 161 (400)
T PRK07379 87 RILTTLDQRFGIAPDAEISLE-IDPGTFDLEQ--LQGYRSLG--VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIH 161 (400)
T ss_pred HHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHH--HHHHHHCC--CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 888888766554333456654 7899887766 44444444 899999999999999999999999999999999999
Q ss_pred HhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 228 ELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 228 ~~~pGi~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
++ |+. ++.|+|+|+||||.++++++++++.+++++++.++.|+++||||+++..
T Consensus 162 ~~--G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~ 216 (400)
T PRK07379 162 QA--GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQY 216 (400)
T ss_pred Hc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHh
Confidence 99 986 9999999999999999999999999999999999999999999998753
No 40
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=6.5e-24 Score=223.29 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=150.0
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
...||.| .-|+++|+||.++...++. +...++.|++|++.+.. .+++.|+|.|++.+....+ .+..+++.+.
T Consensus 4 ~~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~---~l~~L~~~i~- 78 (374)
T PRK05799 4 ISLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLE---ALEILKETIK- 78 (374)
T ss_pred eEEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHH---HHHHHHHHHH-
Confidence 3567777 4499999999998776543 23358999999986543 3577787777543333222 2455666654
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ- 234 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~- 234 (516)
.+.......+.+ .++|..++++. +..+.+.+ ++++++|+||++|++|+.|+|+++.+++.++++.++++ |+.
T Consensus 79 ~~~~~~~~eiti-e~~p~~~t~e~--l~~l~~~G--~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~ 151 (374)
T PRK05799 79 KLNKKEDLEFTV-EGNPGTFTEEK--LKILKSMG--VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNN 151 (374)
T ss_pred hCCCCCCCEEEE-EeCCCcCCHHH--HHHHHHcC--CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCc
Confidence 343222233333 37898888876 44445554 88999999999999999999999999999999999999 884
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
++.|+|+|+||||.+++.++++++.+++++++.+|.++|+||||++++
T Consensus 152 v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~ 199 (374)
T PRK05799 152 INVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNL 199 (374)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHH
Confidence 999999999999999999999999999999999999999999999875
No 41
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=9.5e-24 Score=226.92 Aligned_cols=194 Identities=18% Similarity=0.266 Sum_probs=157.5
Q ss_pred ceEEEEEeCCCCCCCCcCcccCcc--CCCcCCCCHHHHHHHHHHHHhC------CCcEEEEeecCCCCCCCCcCCCHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 149 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~n~~~yg~d~~~~l~eL 149 (516)
....||.| --|+++|+||.+... .+..+.+.++.+++|++...+. .++.|+|.|++.+....+ .+.++
T Consensus 61 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~---~l~~l 136 (449)
T PRK09058 61 KRLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAE---DLARL 136 (449)
T ss_pred ceEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHH---HHHHH
Confidence 45678888 559999999997643 2233455789999999987642 467787777655544332 37888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 010162 150 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 150 L~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
++.+.+.++......+.+. .+|..++++. +..+.+.| +++|+||+||+|+++|+.|+|+++.+++.++++.++++
T Consensus 137 l~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~~l~~aG--vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 137 ITALREYLPLAPDCEITLE-GRINGFDDEK--ADAALDAG--ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HHHHHHcC--CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 8888766654334455554 7888887776 44445554 89999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC
Q 010162 230 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 230 ~pG-i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
| ..++.|+|+|+||||.++++++++++.+++++++.++.|+++|||++++.
T Consensus 212 --g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~ 263 (449)
T PRK09058 212 --DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKA 263 (449)
T ss_pred --CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHH
Confidence 7 68999999999999999999999999999999999999999999999875
No 42
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1.6e-23 Score=226.42 Aligned_cols=247 Identities=18% Similarity=0.221 Sum_probs=178.6
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccC--CC-c-CCCCHHHHHHHHHHHHh------CCCcEEEEeecCCCCCCCCcCCCH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHAR--GH-L-GSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNL 146 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~r--G~-~-rsr~~e~Iv~EI~~L~~------~GvkeI~l~g~n~~~yg~d~~~~l 146 (516)
+....||.| ..||.+|.||.++... +. . ....++.+++|++.+.+ .++..|+|.|+..+....+ .+
T Consensus 162 ~~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~---~L 237 (488)
T PRK08207 162 NEVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAE---EL 237 (488)
T ss_pred CceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHH---HH
Confidence 456788888 5799999999987652 21 1 12347889999987643 2566788888655544332 37
Q ss_pred HHHHHHHHHhCC-CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHH
Q 010162 147 PILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 225 (516)
Q Consensus 147 ~eLL~~I~~~i~-~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~ 225 (516)
.+|++.+.+.++ ..+...+.+...+|+.++++. +..+.+.+ ++++++|+||+++++|+.|+|+|+.+++.++++.
T Consensus 238 ~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~~Lk~~G--v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ 313 (488)
T PRK08207 238 ERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LEVLKKYG--VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHL 313 (488)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HHHHHhcC--CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 888888866552 222335566556899998877 44555554 8899999999999999999999999999999999
Q ss_pred HHHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC---CCC-HHHHHHHHHHHHHH
Q 010162 226 LIELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KVP-SAVVKKRSRELTSV 300 (516)
Q Consensus 226 lr~~~pGi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~---~v~-~~~~~eR~~~L~~l 300 (516)
++++ |+ .+++|+|+|+||||.+++.+|++++.+++++++.++.+++.|||++++.. ++| +++..+..+...+.
T Consensus 314 ar~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 314 AREM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence 9999 99 89999999999999999999999999999999999999999999999753 333 33333444444444
Q ss_pred HHHH--h-----hhhcCCCcEEEEEEEEEecCCceEEEeccCcE
Q 010162 301 FEAF--T-----PYLGMEGRVERIWITEIAADGIHLVGHTKGYV 337 (516)
Q Consensus 301 ~~~~--~-----~~~~~vG~~~~vlve~~~~~~~~~~gr~~~~~ 337 (516)
.++. . +...++|. ..+.++++++ ..+-|+..||
T Consensus 392 l~~~Gy~~Yylyrqk~~~~n---~E~~~ya~~g-~~~~~N~~~w 431 (488)
T PRK08207 392 AKELGYVPYYLYRQKNMLGN---LENVGYAKPG-KESIYNIQIM 431 (488)
T ss_pred HHHcCCHhhhhhhccccccc---cceecccCCC-cchhhHHHHH
Confidence 4332 1 12335554 2233444444 2344555555
No 43
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=4.2e-23 Score=215.34 Aligned_cols=190 Identities=14% Similarity=0.203 Sum_probs=152.5
Q ss_pred EEEEeCCCCCCCCcCcccCccCC--CcCCCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 81 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
.||.| .-|+.+|.||..+...+ ..+.+.++.+++|++...+ .+++.|+|.|++.+....+ .+.++++.+.
T Consensus 3 lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~---~l~~ll~~i~ 78 (350)
T PRK08446 3 LYIHI-PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAK---FYEPIFEIIS 78 (350)
T ss_pred EEEEe-CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHH---HHHHHHHHHH
Confidence 46666 55999999999876532 2244578999999997643 2678888888655544433 3677777776
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM- 233 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi- 233 (516)
+.+.. ...+.+. ++|..++++. +..+.+.+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ |+
T Consensus 79 ~~~~~--~~eitiE-~nP~~~~~e~--l~~l~~~G--vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~ 149 (350)
T PRK08446 79 PYLSK--DCEITTE-ANPNSATKAW--LKGMKNLG--VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFE 149 (350)
T ss_pred HhcCC--CceEEEE-eCCCCCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCC
Confidence 54321 2345544 7898887766 44444544 89999999999999999999999999999999999999 88
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
.++.|+|+|+||||.+++.++++++.+++++++.++.|+++||||+++..
T Consensus 150 ~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~ 199 (350)
T PRK08446 150 NISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKN 199 (350)
T ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhh
Confidence 59999999999999999999999999999999999999999999998754
No 44
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=7.6e-23 Score=215.67 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=163.1
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhC----CCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNA 152 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~n~~~yg~d~~~~l~eLL~~ 152 (516)
...||.| .-|.++|+||.++...... ..+.++.+.+|++...+. .++.|+|.|++.+....+ .+.++++.
T Consensus 5 ~~lYiHI-PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~---~L~~ll~~ 80 (380)
T PRK09057 5 FGLYVHW-PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPE---TVAALLDA 80 (380)
T ss_pred eEEEEEe-CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHH---HHHHHHHH
Confidence 3457777 5699999999987653221 123688899999876542 577888888655544332 37788888
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+.++......+.+. ++|+.++.+. +..+.+.+ +++|++|+||++|++|+.|||+|+.+++.++++.++++ +
T Consensus 81 i~~~f~~~~~~eit~E-~~P~~i~~e~--L~~l~~~G--vnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~ 153 (380)
T PRK09057 81 IARLWPVADDIEITLE-ANPTSVEAGR--FRGYRAAG--VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--F 153 (380)
T ss_pred HHHhCCCCCCccEEEE-ECcCcCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--C
Confidence 8776654333345553 7899887655 44444444 89999999999999999999999999999999999998 8
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-----CC-CHHHHHHHHHHHHHHHH
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KV-PSAVVKKRSRELTSVFE 302 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-----~v-~~~~~~eR~~~L~~l~~ 302 (516)
..++.|+|+|+||||.+++.++++.+.+++++++.++++++.|||++++.. .. ++++..+..+...++.+
T Consensus 154 ~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 229 (380)
T PRK09057 154 PRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA 229 (380)
T ss_pred ccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998753 22 34444444444444443
No 45
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.2e-22 Score=215.14 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=159.3
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc-----CCCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcCCCHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL-----GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPI 148 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~-----rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~e 148 (516)
+...||.| .-|+.+|.||.++...... ..+..+.+.+|++.... ..++.|+|.|++.+....+ .+.+
T Consensus 19 ~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~---~L~~ 94 (394)
T PRK08898 19 PLSLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAA---GLDR 94 (394)
T ss_pred CeEEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHH---HHHH
Confidence 34567777 5599999999987653221 13357889999986543 2467888888766665443 3788
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 010162 149 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228 (516)
Q Consensus 149 LL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~ 228 (516)
+++.+.+.++......+.+. .+|..++.+. |..+.+.| +++++||+||+||++|+.|+|+++.+++.++++.+++
T Consensus 95 ll~~i~~~~~~~~~~eit~E-~~p~~~~~e~--L~~l~~~G--vnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~ 169 (394)
T PRK08898 95 LLSDVRALLPLDPDAEITLE-ANPGTFEAEK--FAQFRASG--VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAK 169 (394)
T ss_pred HHHHHHHhCCCCCCCeEEEE-ECCCCCCHHH--HHHHHHcC--CCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 88888777764333456654 7898887654 44555554 8999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHH
Q 010162 229 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 289 (516)
Q Consensus 229 ~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~ 289 (516)
. +..++.|+|+|+||||.+++.++++++.+++++++.++.|++.|||++++.. ++|..+
T Consensus 170 ~--~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~ 229 (394)
T PRK08898 170 H--FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDD 229 (394)
T ss_pred h--CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChH
Confidence 8 6689999999999999999999999999999999999999999999999865 455433
No 46
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.90 E-value=1.4e-22 Score=212.11 Aligned_cols=196 Identities=16% Similarity=0.286 Sum_probs=152.8
Q ss_pred EEEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHh-CC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 81 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~-~G---vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
.||.| .-|+.+|.||........ ......+.+++|++...+ .| ++.|+|.|++.+....+ .+.++++.|.
T Consensus 3 lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~---~l~~ll~~i~ 78 (360)
T TIGR00539 3 LYIHI-PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVE---AFERLFESIY 78 (360)
T ss_pred EEEEe-CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHH---HHHHHHHHHH
Confidence 46666 459999999998765321 112246777888876433 24 77888888655544333 3677777776
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM- 233 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi- 233 (516)
+.+.......+.+. ++|..++++. +..+.+.+ ++++++|+||+++++|+.|+|+++.+++.++++.++++ |+
T Consensus 79 ~~~~~~~~~eitie-~np~~lt~e~--l~~l~~~G--v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~ 151 (360)
T TIGR00539 79 QHASLSDDCEITTE-ANPELITAEW--CKGLKGAG--INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIE 151 (360)
T ss_pred HhCCCCCCCEEEEE-eCCCCCCHHH--HHHHHHcC--CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCC
Confidence 55542223445554 7999988776 44445554 89999999999999999999999999999999999999 98
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCH
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 287 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~ 287 (516)
.++.|+|+|+||||.+++.++++++.+++++++.++.|+|.|||++++.. ++|.
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~ 206 (360)
T TIGR00539 152 NISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPD 206 (360)
T ss_pred eEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcC
Confidence 69999999999999999999999999999999999999999999999865 4444
No 47
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.7e-22 Score=213.51 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=154.3
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 151 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~eLL~ 151 (516)
+...||.| .-|..+|.||.++...... ...-.+.+.+|++.... ..++.|+|.|++.+....+ .+.++++
T Consensus 11 ~~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~---~l~~ll~ 86 (390)
T PRK06582 11 DLSIYIHW-PFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPV---IVEGIIN 86 (390)
T ss_pred CeEEEEEe-CCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCHH---HHHHHHH
Confidence 45678888 7899999999987653221 12246778889887554 2467888888655444332 3667777
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.+.+.+.......+.+. ++|+.++++. +..+.+.+ +++|++|+||++|++|+.|+|+|+.+++.++++.++++
T Consensus 87 ~i~~~~~~~~~~eitiE-~nP~~~~~e~--l~~l~~~G--vnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~-- 159 (390)
T PRK06582 87 KISNLAIIDNQTEITLE-TNPTSFETEK--FKAFKLAG--INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI-- 159 (390)
T ss_pred HHHHhCCCCCCCEEEEE-eCCCcCCHHH--HHHHHHCC--CCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--
Confidence 77654433333456654 7999887765 44445544 89999999999999999999999999999999999998
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
+..++.|+|+|+||||.+++.++++.+.+++++++.++.+++.||||++++.
T Consensus 160 ~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~ 211 (390)
T PRK06582 160 FPRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLF 211 (390)
T ss_pred CCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHH
Confidence 7799999999999999999999999999999999999999999999998753
No 48
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.90 E-value=2.1e-22 Score=215.52 Aligned_cols=200 Identities=18% Similarity=0.246 Sum_probs=155.8
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc---CCCCHHHHHHHHHHHHhC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL---GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 150 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~---rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~n~~~yg~d~~~~l~eLL 150 (516)
+...||.| .-|+++|+||.++...+.. ....++.+++|++.+.+. .+..++|.|+..+.+.. ..+.+|+
T Consensus 39 ~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 45678999 5599999999987664432 234679999999977643 35677776653333322 2367788
Q ss_pred HHHHHhCCCCC-CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 010162 151 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 151 ~~I~~~i~~~~-~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
+.+.+.++... ...+.+. ++|..++++. +..+.+.+ +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l~~l~~~G--~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--LALLAARG--VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 87766554321 2234443 7798888776 44444444 89999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHH
Q 010162 230 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288 (516)
Q Consensus 230 ~pGi~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~ 288 (516)
|+. ++.|+|+|+||||.++++++++++.+++++++.++++++.|||++++.....++
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~ 247 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDD 247 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHH
Confidence 885 789999999999999999999999999999999999999999999876533333
No 49
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.8e-22 Score=210.66 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=144.8
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHH-HHHHHh----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 151 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~E-I~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~eLL~ 151 (516)
...||.| .-|+++|.||.+....... ...-++.+++| ++.+.. ..++.|+|.|++.+.... ..+.++++
T Consensus 7 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~ 82 (370)
T PRK06294 7 LALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILK 82 (370)
T ss_pred eEEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHH
Confidence 4567777 6699999999876542111 11125666777 544332 235667777754433322 23667777
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.|.+. ....+.+ .++|+.++++. +..+.+.+ +++++||+||+++++|+.|+|+|+.+++.++++.+++.
T Consensus 83 ~i~~~----~~~eit~-E~~P~~~~~~~--l~~l~~~G--~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~-- 151 (370)
T PRK06294 83 TLEAP----HATEITL-EANPENLSESY--IRALALTG--INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH-- 151 (370)
T ss_pred HHHhC----CCCeEEE-EeCCCCCCHHH--HHHHHHCC--CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--
Confidence 66432 2345666 48999987766 44444444 89999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC
Q 010162 232 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 232 Gi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
|+ .++.|+|+|+||||.+++.++++++.+++++++.+|.|+|.||||+++.
T Consensus 152 g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 152 GFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHH
Confidence 98 5999999999999999999999999999999999999999999999874
No 50
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.90 E-value=1.7e-22 Score=206.60 Aligned_cols=189 Identities=18% Similarity=0.356 Sum_probs=140.6
Q ss_pred EEeCCCCCC--------CCcCcccCccCCCcC---CCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcCCCHH
Q 010162 83 LPINVGCLG--------ACTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLP 147 (516)
Q Consensus 83 V~isrGC~~--------~CsFC~ip~~rG~~r---sr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~ 147 (516)
|...-+||+ +|+||.... .++++ .++.++|.++++...+ .+...++|.|.+ ++|... ..+.
T Consensus 22 ~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt-~t~l~~--~~L~ 97 (302)
T TIGR01212 22 LHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT-NTYAPV--EVLK 97 (302)
T ss_pred cCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-cCCCCH--HHHH
Confidence 445677987 799998744 34444 3444455555544333 222236666654 444321 2366
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHH-HHHcCCCCc-cEEEecccCCCHHHHHhcCCCCCHHHHHHHHHH
Q 010162 148 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 225 (516)
Q Consensus 148 eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~-~l~~~~~~~-~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~ 225 (516)
++++.+.+ .+ ....+.+. ++|+.++++..++. ++...+ + .++++|+||+++++|+.|||+|+.+++.++++.
T Consensus 98 ~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~~~G--~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 98 EMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYVERG--YEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhhhCC--ceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHH
Confidence 77776653 32 23445553 78998887665433 333333 6 689999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 226 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 226 lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++|+|.|||+++++.
T Consensus 172 l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~ 227 (302)
T TIGR01212 172 ARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMY 227 (302)
T ss_pred HHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999863
No 51
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.89 E-value=1.4e-21 Score=205.88 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=155.8
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcC---CCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 151 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~r---sr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~~~l~eLL~ 151 (516)
...||.| .-|+.+|.||.......... ..-.+.+++|++.... .+++.|+|.|++.+....+ .+.++++
T Consensus 7 ~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~---~l~~ll~ 82 (378)
T PRK05660 7 LSLYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAE---AIQRLLD 82 (378)
T ss_pred eEEEEEe-CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHH---HHHHHHH
Confidence 4567777 44999999999865432111 1136778888875322 4688899988766655433 3788888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.+.+.++......+.+. ++|..++++. +..+.+.+ +++|++|+||+++++|+.|+|+++.++..++++.++++
T Consensus 83 ~l~~~~~~~~~~eit~e-~np~~l~~e~--l~~Lk~~G--v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~-- 155 (378)
T PRK05660 83 GVRARLPFAPDAEITME-ANPGTVEADR--FVGYQRAG--VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL-- 155 (378)
T ss_pred HHHHhCCCCCCcEEEEE-eCcCcCCHHH--HHHHHHcC--CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--
Confidence 88766654333455554 7898887765 44555555 89999999999999999999999999999999999999
Q ss_pred CC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCH
Q 010162 232 GM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 287 (516)
Q Consensus 232 Gi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~ 287 (516)
|+ .++.|+|+|+||||.+++.++++++.+++++++.+++++++|||++++.. .+|.
T Consensus 156 G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~ 213 (378)
T PRK05660 156 GLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPD 213 (378)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcC
Confidence 98 57999999999999999999999999999999999999999999999754 4443
No 52
>PRK06256 biotin synthase; Validated
Probab=99.88 E-value=1.3e-21 Score=202.84 Aligned_cols=194 Identities=18% Similarity=0.256 Sum_probs=151.5
Q ss_pred CCCCCCCCcCcccCccCC----CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 010162 86 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 161 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG----~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~ 161 (516)
++||+++|.||..+...+ +++.+++|+|+++++.+.+.|++++.|++........+ ...+.++++.+.+...
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~~~--- 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEETD--- 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhcCC---
Confidence 899999999999987643 24678999999999999999999998876433222211 0135666666654321
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 010162 162 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241 (516)
Q Consensus 162 ~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~Iv 241 (516)
+.+. ++...++++. +..+.+++ +.++++++|| ++++++.|+++++.+++.++++.++++ |+.+.+++|+
T Consensus 141 ---i~~~-~~~g~l~~e~--l~~LkeaG--~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~ 209 (336)
T PRK06256 141 ---LEIC-ACLGLLTEEQ--AERLKEAG--VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGII 209 (336)
T ss_pred ---CcEE-ecCCcCCHHH--HHHHHHhC--CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEE
Confidence 1221 1222344444 33444454 7899999999 999999999999999999999999999 9999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHHH
Q 010162 242 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 295 (516)
Q Consensus 242 GfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~ 295 (516)
|+ |||.+|+.++++++++++++.+.++.|.|.||||+++.+.++..+..+...
T Consensus 210 Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia 262 (336)
T PRK06256 210 GM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIA 262 (336)
T ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 98 999999999999999999999999999999999999887777766544444
No 53
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.88 E-value=2e-21 Score=199.65 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=144.4
Q ss_pred ceEEEEEeCCCCCC----CCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-CCcE----E-EEeecCCCCCCCCcCCCHH
Q 010162 78 KFVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLP 147 (516)
Q Consensus 78 ~~~a~V~isrGC~~----~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-Gvke----I-~l~g~n~~~yg~d~~~~l~ 147 (516)
.....|..+||||+ +|+||..... ..+.++++.|+++|+.+.+. +.+. + .|+++.+.....-....+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~~--~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~ 91 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLAD--SSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRN 91 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCCC--CCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHH
Confidence 33446889999999 5999976543 34567999999999998874 3331 1 2444333321110012245
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCcc-EEEecccCCCHHHHH-hcCCCCCHHHHHHHHHH
Q 010162 148 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDT 225 (516)
Q Consensus 148 eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~-~i~iGlQSgsd~vLk-~MnR~~t~e~~~~~I~~ 225 (516)
++++.+.+ .+ ...++.+ +++|+.++++. |..+.+++ ++ +|.+|+||+|+++|+ .|||+++.+++.++++.
T Consensus 92 ~i~~~l~~-~~--~~~~i~~-esrpd~i~~e~--L~~l~~aG--~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~ 163 (313)
T TIGR01210 92 YIFEKIAQ-RD--NLKEVVV-ESRPEFIDEEK--LEELRKIG--VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAEL 163 (313)
T ss_pred HHHHHHHh-cC--CcceEEE-EeCCCcCCHHH--HHHHHHcC--CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHH
Confidence 66666653 22 1234444 47898887766 44455554 77 799999999999995 89999999999999999
Q ss_pred HHHhCCCCEEEEEEEEcCCC----CCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 226 LIELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 226 lr~~~pGi~i~td~IvGfPG----ETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
++++ |+.+.++||+|+|+ ||.+++.++++++.+++ +++.++++++.|||+++++.
T Consensus 164 ~~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~ 222 (313)
T TIGR01210 164 ARKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLW 222 (313)
T ss_pred HHHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHH
Confidence 9999 99999999999996 55678889999999999 99999999999999987654
No 54
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.88 E-value=1.1e-20 Score=192.24 Aligned_cols=199 Identities=19% Similarity=0.225 Sum_probs=151.1
Q ss_pred EEEEEe-CCCCCCCCcCcccCccC---C-CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 80 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 80 ~a~V~i-srGC~~~CsFC~ip~~r---G-~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
.+.+.+ |+||+++|.||..+... + ..+.+++++|+++++.+.+.|++++.+++....... ..+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~----~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD----REFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh----HHHHHHHHHHH
Confidence 344555 99999999999987654 2 346788999999999999999999877653222221 12345555554
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
+.....+ +.+. .+...++++. +..+.+++ +..+.+++| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~---i~~~-~~~g~~~~e~--l~~Lk~aG--~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMG---LKTC-ATLGLLDPEQ--AKRLKDAG--LDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCC---CeEE-ecCCCCCHHH--HHHHHHcC--CCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 3222111 2221 2333445554 33444555 889999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHH
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 294 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~ 294 (516)
+.+++|+|+ +||.+++.++++++.+++++.+.++.|.|.||||+++.+.++.++..+..
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~i 232 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTI 232 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999987666655443333
No 55
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.87 E-value=4.7e-21 Score=182.06 Aligned_cols=194 Identities=36% Similarity=0.558 Sum_probs=154.1
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCC-----CcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~G-----vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| .+.+.|+|++......+ .+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~---~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPE---QLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHH---HHHHHHHHHH
Confidence 468899999999999999987665555668999999999997664 36677777655443321 2677787776
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-C
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 233 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG-i 233 (516)
+.........+.+. +++..++++. +..+.+.+ +..+.++++|+++++.+.++++.+.+++.++++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~~~--~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKEAG--VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHHcC--CCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 54321102334443 4555555555 33444444 56899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
.+.+.+|+|+|+++.+++.++++++.+++++.+.+++|.|.|||++++++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999999999999999999999887
No 56
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.87 E-value=1.6e-20 Score=202.53 Aligned_cols=188 Identities=19% Similarity=0.287 Sum_probs=151.0
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc---CCCCHHHHHHHHHHHHh-----CCCcEEEEeecCCCCCCCCcCCCHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL---GSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILL 150 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~---rsr~~e~Iv~EI~~L~~-----~GvkeI~l~g~n~~~yg~d~~~~l~eLL 150 (516)
...||.| .-|+++|.||..+...+.. +...++.+++|++.+.+ .+++.|+|.|++.+....+ .+.+++
T Consensus 50 ~~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~---~l~~ll 125 (455)
T TIGR00538 50 LSLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPE---QISRLM 125 (455)
T ss_pred eEEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHH---HHHHHH
Confidence 4568877 5699999999988654321 22358999999998753 3788899988766544433 377888
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 010162 151 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230 (516)
Q Consensus 151 ~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 230 (516)
+.+.+.++......+.+. ++|..++++. +..+.+.+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 126 ~~i~~~~~~~~~~eitie-~np~~l~~e~--l~~lk~~G--~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~- 199 (455)
T TIGR00538 126 KLIRENFPFNADAEISIE-IDPRYITKDV--IDALRDEG--FNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA- 199 (455)
T ss_pred HHHHHhCCCCCCCeEEEE-eccCcCCHHH--HHHHHHcC--CCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-
Confidence 888765443222345554 7898888776 44444554 89999999999999999999999999999999999999
Q ss_pred CCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 231 PGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 231 pGi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
|+ .+..|+|+|+||||.+++.++++++.+++++++.++.|++.|++
T Consensus 200 -G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 200 -GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWV 246 (455)
T ss_pred -CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccch
Confidence 98 48999999999999999999999999999999999999988875
No 57
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=1e-20 Score=202.37 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=140.9
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccC-CCcC-CCCHHHHHHHHHHHHhCC--CcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHAR-GHLG-SYTVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 153 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~r-G~~r-sr~~e~Iv~EI~~L~~~G--vkeI~l~g~n~~~yg~d~~~~l~eLL~~I 153 (516)
....||.+ --|+++|+||.++... +..+ ...++.+.+|++.+.+.| +..|+|.|++ ++.-. ..+.++++.+
T Consensus 52 ~~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l~---~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGT-TTILE---DELAKTLELA 126 (433)
T ss_pred cEEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cccCH---HHHHHHHHHH
Confidence 45667777 4599999999987642 2222 224799999999877654 4567666654 44322 2477777777
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-C
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-G 232 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p-G 232 (516)
.+.++ ...+.+ .++|+.++++..+ .+.. . ++++++|+||+||++|+.|+|.|+.++..++++.++++.. .
T Consensus 127 ~~~f~---i~eis~-E~~P~~lt~e~L~--~l~~--~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~ 197 (433)
T PRK08629 127 KKLFS---IKEVSC-ESDPNHLDPPKLK--QLKG--L-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLF 197 (433)
T ss_pred HHhCC---CceEEE-EeCcccCCHHHHH--HHHH--h-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccC
Confidence 65443 234555 3799999877633 3322 2 8899999999999999999999987666555555555321 3
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
..+++|+|+||||||.+++.++++++.+++++++++|++++.|||+..
T Consensus 198 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 198 PIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 468999999999999999999999999999999999999999999754
No 58
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.86 E-value=7.2e-21 Score=197.47 Aligned_cols=200 Identities=17% Similarity=0.241 Sum_probs=153.6
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc---------CCCHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPIL 149 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~---------~~~l~eL 149 (516)
...+|.+|+||+.+|+||.++...|..+++++|+|+++++.+.+.|++++.|+|++.+.+..+. ...+.++
T Consensus 12 ~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~ 91 (336)
T PRK06245 12 RNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEY 91 (336)
T ss_pred cceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHH
Confidence 3468999999999999999998888888999999999999999999999999987765554211 0124556
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC---CCCHHHHHHHHHHH
Q 010162 150 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTL 226 (516)
Q Consensus 150 L~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR---~~t~e~~~~~I~~l 226 (516)
++++.+..... -.+..++|..++++. +..+.+.+ ..+++++||+++.+++.|+| +.+.++..+.++.+
T Consensus 92 i~~i~~~~~~~----g~~~~~~~~~lt~e~--i~~Lk~ag---~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a 162 (336)
T PRK06245 92 LYDLCELALEE----GLLPHTNAGILTREE--MEKLKEVN---ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENA 162 (336)
T ss_pred HHHHHHHHhhc----CCCccccCCCCCHHH--HHHHHHhC---CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHH
Confidence 66655432211 012246666666655 33333332 24678889999999988865 44678889999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeecCCCccccCCCCCHHHH
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVV 290 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~-----~d~v~if~~sp~pGTpa~~~~~v~~~~~ 290 (516)
++. |+.+.+++|+|+ |||.+++.+++.++++++ ++.+.+++|+|.||||+..++.++.++.
T Consensus 163 ~~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~ 228 (336)
T PRK06245 163 GKL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEM 228 (336)
T ss_pred HHc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHH
Confidence 998 999999999998 999999999999999985 6788899999999999987665555443
No 59
>PLN02428 lipoic acid synthase
Probab=99.86 E-value=2.5e-20 Score=192.26 Aligned_cols=208 Identities=18% Similarity=0.205 Sum_probs=159.9
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.-.++.+++||+++|.||+++..+++.+.+ ++++.+.++.+.+.|+++++|++++...+.......+.++++.|.+..+
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P 180 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKP 180 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCC
Confidence 445778999999999999999877766654 6788888888888899999999986655422112357888888875433
Q ss_pred CCCCceEEEeecCCcch-HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 159 PDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i-~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
++++..+.|+.+ ++++ |..+..++ +..++.++|+ ++++++.|+ ++++.++++++++.+++.+||+.+.
T Consensus 181 -----~i~Ie~L~pdf~~d~el--L~~L~eAG--~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tk 250 (349)
T PLN02428 181 -----EILVEALVPDFRGDLGA--VETVATSG--LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTK 250 (349)
T ss_pred -----CcEEEEeCccccCCHHH--HHHHHHcC--CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 567777777655 4444 44455555 7889999997 899999999 7899999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 303 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~ 303 (516)
++||+|| |||++|+.++++++++++++.+.+.+|. +|...-.... =++++ .++++.++..+
T Consensus 251 Sg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h~~v~~~v~p~----~f~~~~~~~~~ 312 (349)
T PLN02428 251 TSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRHLPVKEYVTPE----KFEFWREYGEE 312 (349)
T ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcceeeeecccCHH----HHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 4432112121 24443 35566665544
No 60
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=4.5e-20 Score=198.86 Aligned_cols=189 Identities=17% Similarity=0.252 Sum_probs=149.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc---CCCCHHHHHHHHHHHHhC-----CCcEEEEeecCCCCCCCCcCCCHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL---GSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPIL 149 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~---rsr~~e~Iv~EI~~L~~~-----GvkeI~l~g~n~~~yg~d~~~~l~eL 149 (516)
....||.|-- |+++|.||......... ....++.+++||+...+. ++..|+|.|++.+.+..+ .+.++
T Consensus 50 ~~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~---~l~~l 125 (453)
T PRK13347 50 PVSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPD---QFERL 125 (453)
T ss_pred ceEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHH---HHHHH
Confidence 4567888855 99999999876542211 112368999999976542 577888888766655443 37888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 010162 150 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 150 L~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
++.+.+.++......+.+. ++|..++++. +..+.+.+ +++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 126 l~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l~~L~~~G--~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~ 200 (453)
T PRK13347 126 MAALRDAFDFAPEAEIAVE-IDPRTVTAEM--LQALAALG--FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA 200 (453)
T ss_pred HHHHHHhCCCCCCceEEEE-eccccCCHHH--HHHHHHcC--CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8888765543222345554 7899888777 44444444 89999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 230 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 230 ~pGi~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
|+. ++.|+|+|+||||.+++.++++++.+++++++.+|.|+..|++
T Consensus 201 --G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~ 247 (453)
T PRK13347 201 --GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSR 247 (453)
T ss_pred --CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccch
Confidence 884 9999999999999999999999999999999999999866654
No 61
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=4.7e-20 Score=198.73 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=149.6
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc---CCCCHHHHHHHHHHHHh-----CCCcEEEEeecCCCCCCCCcCCCHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL---GSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILL 150 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~---rsr~~e~Iv~EI~~L~~-----~GvkeI~l~g~n~~~yg~d~~~~l~eLL 150 (516)
...||.| .-|+++|+||..+...+.. ..+.++.+++|++.+.+ .++..|+|.|++.+.+..+ .+.+++
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~---~l~~ll 125 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPE---QLRRLM 125 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHH---HHHHHH
Confidence 3457777 5599999999987654322 22457899999997664 2577888888654444332 378888
Q ss_pred HHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 010162 151 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 230 (516)
Q Consensus 151 ~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 230 (516)
+.+.+.++......+.+. ++|..++++. +..+.+.+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 126 ~~l~~~~~~~~~~e~tie-~np~~lt~e~--l~~l~~aG--~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~- 199 (453)
T PRK09249 126 ALLREHFNFAPDAEISIE-IDPRELDLEM--LDALRELG--FNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL- 199 (453)
T ss_pred HHHHHhCCCCCCCEEEEE-ecCCcCCHHH--HHHHHHcC--CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 888765543223445554 7898888777 44445554 89999999999999999999999999999999999999
Q ss_pred CCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 231 PGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 231 pGi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
|+ .+.+|+|+|+||||.++++++++++.+++++++.++.|++.|++
T Consensus 200 -G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 200 -GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWL 246 (453)
T ss_pred -CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhh
Confidence 98 89999999999999999999999999999999999999977765
No 62
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.86 E-value=4.5e-20 Score=196.17 Aligned_cols=242 Identities=21% Similarity=0.273 Sum_probs=177.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc---CCCCHHHHHHHHHHHHhCC-----CcEEEEeecCCCCCCCCcCCCHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL---GSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPIL 149 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~---rsr~~e~Iv~EI~~L~~~G-----vkeI~l~g~n~~~yg~d~~~~l~eL 149 (516)
..+.||.| --|...|.||..+...... ...-.+.+.+|++...... ++.|+|.|+..+.... ..+..+
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~l 109 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERL 109 (416)
T ss_pred ceEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHH
Confidence 56778888 7899999999998653221 1223678888998877652 5677777754343333 247888
Q ss_pred HHHHHHhCC-CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 010162 150 LNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 228 (516)
Q Consensus 150 L~~I~~~i~-~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~ 228 (516)
+..|.+.++ .+....+.+. ++|..++.+. +..+...| ++++++||||+++++||+++|.|+.++..++++.+++
T Consensus 110 l~~l~~~~~~~~~~~EitiE-~nP~~~~~e~--~~~l~~~G--vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~ 184 (416)
T COG0635 110 LKALRELFNDLDPDAEITIE-ANPGTVEAEK--FKALKEAG--VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK 184 (416)
T ss_pred HHHHHHhcccCCCCceEEEE-eCCCCCCHHH--HHHHHHcC--CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 888877663 3334677776 5999887666 33444444 8899999999999999999999999999999999999
Q ss_pred hCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-C---CCHHH-HHHHHHHHHHHHH
Q 010162 229 LVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K---VPSAV-VKKRSRELTSVFE 302 (516)
Q Consensus 229 ~~pGi-~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~---v~~~~-~~eR~~~L~~l~~ 302 (516)
. |+ .++.|+|+|+|+||.+++.++++.+.+++++++.+|.|+..|+|++++.. + +|+.. +.++.+...+..+
T Consensus 185 ~--g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 185 A--GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred c--CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 8 77 79999999999999999999999999999999999999999999999875 3 45443 2223322222222
Q ss_pred HHhhhhcCCCcEEEEEEEEEecCCceEEEeccCcEEE
Q 010162 303 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 339 (516)
Q Consensus 303 ~~~~~~~~vG~~~~vlve~~~~~~~~~~gr~~~~~~v 339 (516)
+ . |- ..+-++++++++ .-+-|+..||.-
T Consensus 263 ~----~---Gy-~~yeisnfa~~~-~e~~hNl~yw~~ 290 (416)
T COG0635 263 K----A---GY-RQYEISNFAKPG-GECRHNLQYWET 290 (416)
T ss_pred H----C---CC-cEEeechhcCcc-hHHHhhhccccC
Confidence 1 1 22 235566665544 245667777654
No 63
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.83 E-value=2.1e-19 Score=184.52 Aligned_cols=195 Identities=16% Similarity=0.262 Sum_probs=147.0
Q ss_pred EEEEeCCCCCCCCcCcccCccCC--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 81 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+|.+|+||+++|.||......+ +.+.+++|+|+++++.+.+.|+++|.|+|++.+.+..+ .+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIE---YYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHH---HHHHHHHHHHHHCC
Confidence 36889999999999999876544 24578999999999999999999999998654433332 36788888876432
Q ss_pred CCCCceEEEeecCCcc----------hHHHHHHHHHHHcCCCCccEE-EecccCCCHHHHHhc-CCCCCHHHHHHHHHHH
Q 010162 159 PDGSTMLRIGMTNPPF----------ILEHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTL 226 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~----------i~~~l~eL~~l~~~~~~~~~i-~iGlQSgsd~vLk~M-nR~~t~e~~~~~I~~l 226 (516)
.+.+....+.+ .+++. +..+.+++ +..+ +.|+|++++++++.+ +++.+.+++.++++.+
T Consensus 84 -----~i~~~~~s~~e~~~~~~~~g~~~~e~--l~~LkeAG--l~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a 154 (309)
T TIGR00423 84 -----DVHIHAFSPMEVYFLAKNEGLSIEEV--LKRLKKAG--LDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTA 154 (309)
T ss_pred -----CceEEecCHHHHHHHHHHcCCCHHHH--HHHHHHcC--CCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 22332222211 12332 33444444 6677 479999999999988 6677999999999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec----CCCc-cccC--CCCCHHHH
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTP-AARM--KKVPSAVV 290 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~----pGTp-a~~~--~~v~~~~~ 290 (516)
+++ |+.+.+++|+|+| ||.+|+.+++.++++++.+..++..|.|. +||| +... ++.+..+.
T Consensus 155 ~~~--Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~ 222 (309)
T TIGR00423 155 HRL--GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDD 222 (309)
T ss_pred HHc--CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHH
Confidence 999 9999999999986 89999999999999999888777777774 5888 5543 34555443
No 64
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.82 E-value=2.1e-19 Score=185.59 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=147.0
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCC------------CCc-CC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 144 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg------------~d~-~~ 144 (516)
..+|++|+||+.+|+||+++..+|.. ..+++|+|+++++.+.+.|++++.++++.-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 46899999999999999999887764 4789999999999999999999999865333221 000 01
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCC----CHHHHH
Q 010162 145 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 220 (516)
Q Consensus 145 ~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~----t~e~~~ 220 (516)
.+.++++.+.++.+. +..+++..++++. +..+.+.+ . .+++.+|++++.+++.|++.+ +.++.+
T Consensus 85 ~~~~~~~~i~~e~~~-------~~~~~~g~lt~e~--l~~Lk~aG--~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEETGL-------LPHTNPGVMSRDE--LARLKPVN--A-SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhcCC-------ccccCCCCCCHHH--HHHHHhhC--C-CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 244555555432211 1224555555554 33333443 2 357889999999888776655 467889
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 221 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 221 ~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~-----~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
+.++.+++. |+.+++++|+|+ |||++|+.+++.++++++ ++.+.+++|.|.||||++..+.++..+
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 999999999 999999999997 999999999999999997 667778899999999998877776554
No 65
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.82 E-value=4.6e-19 Score=192.31 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=147.5
Q ss_pred CCCCC-CCcCccc-------CccC-C---------CcCCCCHHHHHHHHHHHHhCC--C--cEEEEeecCCCCCCCCcCC
Q 010162 87 VGCLG-ACTYCKT-------KHAR-G---------HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 144 (516)
Q Consensus 87 rGC~~-~CsFC~i-------p~~r-G---------~~rsr~~e~Iv~EI~~L~~~G--v--keI~l~g~n~~~yg~d~~~ 144 (516)
--||| .|.||-- |..+ | +.+..|..++.++++++...| + -|+.|.|++++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 44995 7999953 2111 1 134558899999999999865 3 25589999999887664
Q ss_pred CHHHHHHHHHHhCCC----------------------CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCC
Q 010162 145 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 202 (516)
Q Consensus 145 ~l~eLL~~I~~~i~~----------------------~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSg 202 (516)
...+++.+.+.++. .....+++. ++|+.++++. |..|.+.+ ++++++|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~~~G--~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRMLKLG--ATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHHHcC--CCEEEEECccC
Confidence 44455554444322 011234443 6999988776 44445555 89999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh---cCCCeEEEEEeeecCCCcc
Q 010162 203 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 203 sd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~e---l~~d~v~if~~sp~pGTpa 279 (516)
+|++|+.|||+|+.+++.++++.++++ |+.+.+|+|+|+||||.+++.+|++.+.+ +++|.+.+|++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999985 8999999999999999999
Q ss_pred ccCC
Q 010162 280 ARMK 283 (516)
Q Consensus 280 ~~~~ 283 (516)
++++
T Consensus 306 ~~~~ 309 (522)
T TIGR01211 306 YELW 309 (522)
T ss_pred HHHH
Confidence 9864
No 66
>PRK06267 hypothetical protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=179.91 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=147.3
Q ss_pred EEEEEeCCCCC--CCCcCcccCccCC-----CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 010162 80 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 152 (516)
Q Consensus 80 ~a~V~isrGC~--~~CsFC~ip~~rG-----~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~ 152 (516)
.+.|..|.+|+ ++|+||..+..++ ..+.+++|+|++|++.+.+.|++.++++|+.. +.. ..+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~~---~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YTT---EEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCH---HHHHHHHHH
Confidence 45677899999 9999999876433 23578999999999999999999887777532 222 235666666
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.. +... ..++.++.+++ .. +.... ...+..++||+++++++.++++++.+++.+.++.++++ |
T Consensus 103 I~~-~~~~-~~~~s~G~~d~-----~~--~~~~~-----l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a--G 166 (350)
T PRK06267 103 IAY-IQGC-KQYLNVGIIDF-----LN--INLNE-----IEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL--G 166 (350)
T ss_pred HHH-hhCC-ceEeecccCCH-----HH--Hhhcc-----ccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc--C
Confidence 643 2211 13444443322 11 11111 22345789999999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHH
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 293 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR 293 (516)
+.+.+++|+|+ |||.+|+.++++++.+++++.+.+++|+|.||||++..++++.++..+-
T Consensus 167 i~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ 226 (350)
T PRK06267 167 LKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNW 226 (350)
T ss_pred CeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHH
Confidence 99999999996 9999999999999999999999999999999999998777776654333
No 67
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=168.50 Aligned_cols=183 Identities=20% Similarity=0.357 Sum_probs=137.2
Q ss_pred CCCcCcccCccC--CCcCCCCHH-HHHHHHHHHHhC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH-hCCCCCCce
Q 010162 91 GACTYCKTKHAR--GHLGSYTVE-SLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA-ELPPDGSTM 164 (516)
Q Consensus 91 ~~CsFC~ip~~r--G~~rsr~~e-~Iv~EI~~L~~~--GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~-~i~~~~~~~ 164 (516)
.+|+||...... .-.+..|+. ++-++++.+.+. +.+.+...-.-+++|.. .+.|+++.+ .+..++..-
T Consensus 44 GGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------vevLre~ye~aL~~~~VVG 117 (312)
T COG1242 44 GGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------VEVLREMYEQALSEAGVVG 117 (312)
T ss_pred CceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------HHHHHHHHHHHhCcCCeeE
Confidence 379999875442 112333554 444444444443 33333322223444432 556666554 344444556
Q ss_pred EEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 010162 165 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 244 (516)
Q Consensus 165 iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfP 244 (516)
+.++ ++|+.++++..++.+-+... ..-++.+|+||.++++|+++||+|+.+.|.+++.++|+. ||.+.+++|+|+|
T Consensus 118 LsIg-TRPDClpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkr--gIkvc~HiI~GLP 193 (312)
T COG1242 118 LSIG-TRPDCLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKR--GIKVCTHLINGLP 193 (312)
T ss_pred Eeec-CCCCCCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHc--CCeEEEEEeeCCC
Confidence 6665 78999988877765544333 567999999999999999999999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 245 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 245 GETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
|||.+++.+|++.+..++++.+.++++...+|||+.+++
T Consensus 194 gE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y 232 (312)
T COG1242 194 GETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMY 232 (312)
T ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHH
Confidence 999999999999999999999999999999999999876
No 68
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.80 E-value=1.6e-18 Score=180.44 Aligned_cols=189 Identities=17% Similarity=0.295 Sum_probs=145.0
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.|.+|+||+++|.||......+. ...+++|+|+++++.+.+.|+++|.|+|++.+.+..+ .+.++++.|.+..+.
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~---~~~~i~~~Ik~~~~~ 118 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGD---FYLDILRAVKEEVPG 118 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHH---HHHHHHHHHHHHCCC
Confidence 57789999999999998765442 2347999999999999999999999998655444332 367888888765331
Q ss_pred CCCceEEEe-------ecCCcchHHHHHHHHHHHcCCCCccEEE-ecccCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhC
Q 010162 160 DGSTMLRIG-------MTNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 230 (516)
Q Consensus 160 ~~~~~iri~-------~~~P~~i~~~l~eL~~l~~~~~~~~~i~-iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~ 230 (516)
..+.-++ .......+++. +.++.++| +.+++ .+.|++++++++.+.++ .+.++..++++.++++
T Consensus 119 --i~~~~~t~~ei~~~~~~~g~~~~e~--l~~LkeAG--l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~- 191 (343)
T TIGR03551 119 --MHIHAFSPMEVYYGARNSGLSVEEA--LKRLKEAG--LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL- 191 (343)
T ss_pred --ceEEecCHHHHHHHHHHcCCCHHHH--HHHHHHhC--cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc-
Confidence 1221110 00111223332 34444554 66776 57899999999999986 4999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC----CCccccC
Q 010162 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARM 282 (516)
Q Consensus 231 pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p----GTpa~~~ 282 (516)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|.| |||+++.
T Consensus 192 -Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~ 245 (343)
T TIGR03551 192 -GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK 245 (343)
T ss_pred -CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc
Confidence 9999999999986 999999999999999999999999999977 9999854
No 69
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.79 E-value=3.6e-18 Score=177.55 Aligned_cols=193 Identities=21% Similarity=0.284 Sum_probs=144.8
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.+.+|.||+.+|+||++....+. ...+++++|+++++.+.+.|+++|.|+|+..+....+ .+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~---~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLD---YYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHH---HHHHHHHHHHHHCC-
Confidence 46679999999999987654443 2457999999999999999999999998644433222 25678888765432
Q ss_pred CCCceEEEeecCCcch----------HHHHHHHHHHHcCCCCccEEE-ecccCCCHHHHHhcCC-CCCHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNPPFI----------LEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i----------~~~l~eL~~l~~~~~~~~~i~-iGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr 227 (516)
.+.+....+.++ +++. +..+.++| +.+++ .|+|+.++++++.+.+ +.+.+++.++++.++
T Consensus 120 ----~i~~~~~s~~ei~~~~~~~g~~~~e~--l~~Lk~aG--~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~ 191 (340)
T TIGR03699 120 ----HIHIHSFSPVEIVYIAKKEGLSLREV--LERLKEAG--LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAH 191 (340)
T ss_pred ----CcCCCCCCHHHHHHHhccCCCCHHHH--HHHHHHcC--CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 112211112111 1222 33444444 66776 6899999999999854 579999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec----CCCccccCCCCCHHH
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAV 289 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~----pGTpa~~~~~v~~~~ 289 (516)
++ |+.+.+++|+|+ |||.++..+++.++++++.+..++..|.|. +|||+++.+..+..+
T Consensus 192 ~~--Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 192 KL--GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred Hc--CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 99 999999999996 999999999999999999888777777775 799998876666554
No 70
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.78 E-value=1.1e-17 Score=156.66 Aligned_cols=185 Identities=23% Similarity=0.385 Sum_probs=145.9
Q ss_pred EeCCCCCCCCcCcccCccCCCcCCCCH--HHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 010162 84 PINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 161 (516)
Q Consensus 84 ~isrGC~~~CsFC~ip~~rG~~rsr~~--e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~ 161 (516)
.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.++|++...+. .+.++++.+.+..+
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~--- 73 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELP--- 73 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCC---
Confidence 578999999999999887655433333 46666666666678899999887666543 37888888875432
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 162 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 162 ~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
...+++. ++...+++.. +..+.+.+ +..+.++++|.++..++.++ ++.+.+++.+.++.+++. ++.+.+.+|
T Consensus 74 ~~~~~i~-T~~~~~~~~~--~~~l~~~g--~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i 146 (204)
T cd01335 74 GFEISIE-TNGTLLTEEL--LKELKELG--LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTLL 146 (204)
T ss_pred CceEEEE-cCcccCCHHH--HHHHHhCC--CceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEEE
Confidence 2445554 3444433433 33334443 78999999999999999998 788999999999999999 999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeecCCCccccCC
Q 010162 241 CGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~-~d~v~if~~sp~pGTpa~~~~ 283 (516)
+|.|+++.+++.++++++.+.. ++.+++++|.|.|||+++...
T Consensus 147 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~~~~ 190 (204)
T cd01335 147 VGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELAA 190 (204)
T ss_pred EecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeeeecc
Confidence 9999999999999999999998 999999999999999999443
No 71
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.78 E-value=5.4e-18 Score=177.05 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=150.9
Q ss_pred EEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 81 EILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+|.++.||+++|+||++....+.. ..+++|+|+++++...+.|++++.+++++...+.. ..+.++++.|.+.++
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~---~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPF---EWYLDMIRTLKEAYP 126 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 3577899999999999987655421 12699999999999999999999999865443322 237788888876554
Q ss_pred CCCCceEEEeecCCcc----------hHHHHHHHHHHHcCCCCccEEE-ecccCCCHHHHHhcCCC-CCHHHHHHHHHHH
Q 010162 159 PDGSTMLRIGMTNPPF----------ILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTL 226 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~----------i~~~l~eL~~l~~~~~~~~~i~-iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~l 226 (516)
.+.+....|.. .+++. +.++.++| +..++ .|+||+++++++.+.++ .+.++++++++.+
T Consensus 127 -----~i~i~~~~~~ei~~~~~~~g~~~~e~--l~~LkeAG--ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a 197 (351)
T TIGR03700 127 -----DLHVKAFTAVEIHHFSKISGLPTEEV--LDELKEAG--LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTA 197 (351)
T ss_pred -----CceEEeCCHHHHHHHHHHcCCCHHHH--HHHHHHcC--CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 23343333322 12232 33444444 66665 69999999999999986 4778999999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec----CCCccccC--CCCCHHHHH
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM--KKVPSAVVK 291 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~----pGTpa~~~--~~v~~~~~~ 291 (516)
+++ |+.+.+.+|+|+ |||.++..+.+..+++++.+..++..|.|. +|||+... +..+..+..
T Consensus 198 ~~~--Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~l 265 (351)
T TIGR03700 198 HEL--GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDL 265 (351)
T ss_pred HHc--CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHH
Confidence 999 999999999997 999999999999999999988888899998 59999876 556655533
No 72
>PRK08445 hypothetical protein; Provisional
Probab=99.77 E-value=1.2e-17 Score=173.92 Aligned_cols=185 Identities=15% Similarity=0.167 Sum_probs=141.4
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.|.+|.||+++|+||+.....+. ....++|+|++.++.+.+.|.++|+++|++.+.+..+ .+.++++.|.+.++
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e---~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIE---WYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHH---HHHHHHHHHHHHCC-
Confidence 47789999999999999765322 2245999999999999999999999998666555433 37788888887664
Q ss_pred CCCceEEEeecCCcchH----------HHHHHHHHHHcCCCCccEE-EecccCCCHHHHHhc-CCCCCHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNPPFIL----------EHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i~----------~~l~eL~~l~~~~~~~~~i-~iGlQSgsd~vLk~M-nR~~t~e~~~~~I~~lr 227 (516)
++++....+..++ ++ .+..+.++| +.++ +.|+||++|++++.+ +++.+.+++++.++.++
T Consensus 121 ----~i~~~a~s~~ei~~~a~~~~~~~~e--~L~~LkeAG--l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~ 192 (348)
T PRK08445 121 ----TITIHGFSAVEIDYIAKISKISIKE--VLERLQAKG--LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAH 192 (348)
T ss_pred ----CcEEEEccHHHHHHHHHHhCCCHHH--HHHHHHHcC--CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 2333222221111 22 244444454 6677 589999999999999 77899999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE-----EeeecCCCccccC
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS-----QFYPRPGTPAARM 282 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if-----~~sp~pGTpa~~~ 282 (516)
++ |+.+.+.+|+|+ +||.++..+.+.++++++.+..++. .|.| ||||++..
T Consensus 193 ~~--Gi~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 193 LI--GMKSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLKEE 248 (348)
T ss_pred Hc--CCeeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccccc
Confidence 99 999999999997 6999999999999999987653333 3445 99999854
No 73
>PLN02389 biotin synthase
Probab=99.75 E-value=1.3e-16 Score=167.70 Aligned_cols=199 Identities=15% Similarity=0.223 Sum_probs=148.3
Q ss_pred EEEEEe-CCCCCCCCcCcccCccC--CC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHH
Q 010162 80 VEILPI-NVGCLGACTYCKTKHAR--GH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAI 153 (516)
Q Consensus 80 ~a~V~i-srGC~~~CsFC~ip~~r--G~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~-~~~l~eLL~~I 153 (516)
...+.+ +.+|+.+|.||...... +. +...++|+|+++++.+.+.|+++|.++..-....+.+. ...+.++++.+
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i 162 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI 162 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH
Confidence 345666 89999999999986532 22 34579999999999999999999988642111223221 12345556655
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
. ..+ +.+. .....++++. +..+.++| +.++++.+++ +++..+.+..+++.++.++.++.++++ |+
T Consensus 163 k-~~~------l~i~-~s~G~l~~E~--l~~LkeAG--ld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--Gi 227 (379)
T PLN02389 163 R-GMG------MEVC-CTLGMLEKEQ--AAQLKEAG--LTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--GI 227 (379)
T ss_pred h-cCC------cEEE-ECCCCCCHHH--HHHHHHcC--CCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--CC
Confidence 4 221 2222 1222334333 33444444 8899999999 688999998889999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEEeeecCCCccccCCCCCHHHHHHHH
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 294 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el--~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~ 294 (516)
.+.+.+|+|+ |||.+|..+++.+++++ .++.+.++.|.|.||||+++.++++..+..+..
T Consensus 228 ~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~i 289 (379)
T PLN02389 228 SVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMI 289 (379)
T ss_pred eEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHH
Confidence 9999999999 99999999999999999 578999999999999999988777776544433
No 74
>PRK08508 biotin synthase; Provisional
Probab=99.75 E-value=7.3e-17 Score=163.46 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=141.5
Q ss_pred eCCCCCCCCcCcccCccCC----CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 010162 85 INVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 160 (516)
Q Consensus 85 isrGC~~~CsFC~ip~~rG----~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~ 160 (516)
.|.||+.+|.||+.+...+ .++.+++|+|+++++.+.+.|+++|.+++.... +.......+.++++.+.+..+.
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p~- 90 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVPG- 90 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCCC-
Confidence 3899999999999976432 245579999999999999999999998753332 1111112356666666544321
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 161 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 161 ~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
..+..+. ..++++. +.++.+++ +..+++++|+ ++++++.+..++++++..+.++.++++ |+.+.+.+|
T Consensus 91 --l~i~~s~---G~~~~e~--l~~Lk~aG--ld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~I 158 (279)
T PRK08508 91 --LHLIACN---GTASVEQ--LKELKKAG--IFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGGI 158 (279)
T ss_pred --cEEEecC---CCCCHHH--HHHHHHcC--CCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeecceeE
Confidence 1121111 1222332 33444444 7899999999 578898998899999999999999999 999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
+|+ |||++|..+++.++++++++.+-+..|.|.||||+.. ++.+..+
T Consensus 159 ~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~~ 205 (279)
T PRK08508 159 FGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSADE 205 (279)
T ss_pred Eec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHHH
Confidence 997 9999999999999999999999999999999999864 3455443
No 75
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.74 E-value=3.5e-17 Score=149.19 Aligned_cols=162 Identities=21% Similarity=0.389 Sum_probs=123.5
Q ss_pred EEeCCCCCCCCcCcccCc--cCCCcCCCCHHHHHHHHHHH-HhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 83 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 83 V~isrGC~~~CsFC~ip~--~rG~~rsr~~e~Iv~EI~~L-~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
|++++||+++|.||..+. ..+..+.+++++++++++.+ .+.|.+.+.++|++...+. .+.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~-----~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHP-----DFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC-----HHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcch-----hHHHHHHHHHHhhc-
Confidence 578999999999999988 44556788999999999999 5888778888776655542 25677776654321
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHH-HHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 010162 160 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 238 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~-vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td 238 (516)
....+.+. +++...+++. +..+.+.+ +.++.+++||.+++ +++.++++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~~~--l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDEEL--LDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCHHH--HHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhHHH--HHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 11334443 3333332333 33444444 78999999999999 999999999999999999999999 8876899
Q ss_pred EEEcCCCCCHHHHHHHHHHH
Q 010162 239 IICGFPGETDEDFNQTVNLI 258 (516)
Q Consensus 239 ~IvGfPGETeedf~etl~fi 258 (516)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 76
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.70 E-value=9.8e-16 Score=161.17 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=148.2
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+.+.+|.+|+.+|.||..+...+. .+..++++|+++++.+.+.|+++|.|+++..... .+ ...+.++++.|.+.++
T Consensus 75 ~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p 152 (371)
T PRK09240 75 YTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS 152 (371)
T ss_pred EeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 3456679999999999998754332 2567999999999999999999999988544432 11 1236677777765443
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCE-
Q 010162 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 234 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~~~pGi~- 234 (516)
.+.+. ..|.. .+.+ ..+.+++ +.++++++||.+++.++.+. +.++.++.++.++.++++ |+.
T Consensus 153 -----~i~i~-~g~lt-~e~l---~~Lk~aG--v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 218 (371)
T PRK09240 153 -----SVSIE-VQPLS-EEEY---AELVELG--LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRK 218 (371)
T ss_pred -----Cceec-cCCCC-HHHH---HHHHHcC--CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 12222 22321 2333 3444454 88999999999999999995 578999999999999999 995
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCC------eEEEEEeeecCCCccccCCCCCHHHHHHHHHH
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d------~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~ 296 (516)
+++++|+|+ ||+.+|..+++..+++++.. .+.+..|.|.+| |+...+.+++.+..+....
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHH
Confidence 999999999 67999999999888888643 566778999999 8876667887765444433
No 77
>PRK15108 biotin synthase; Provisional
Probab=99.69 E-value=3.3e-15 Score=155.68 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=145.4
Q ss_pred EEEEe-CCCCCCCCcCcccCccC--C--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 81 EILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 81 a~V~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
..+.+ |.+|+.+|.||...... + +....++|+|++.++.+.+.|+++|.+++........+ ...+.++++.+.+
T Consensus 44 ~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik~ 122 (345)
T PRK15108 44 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVKA 122 (345)
T ss_pred EeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHHh
Confidence 34555 99999999999886432 2 23346999999999999999999997754311111111 1225566666642
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
.. . .+.++ ...++++. +.++.++| +.++++.++| +++....+..+++.++.++.++.++++ |+.+
T Consensus 123 -~~---i-~v~~s---~G~ls~e~--l~~LkeAG--ld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~v 187 (345)
T PRK15108 123 -MG---L-ETCMT---LGTLSESQ--AQRLANAG--LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIKV 187 (345)
T ss_pred -CC---C-EEEEe---CCcCCHHH--HHHHHHcC--CCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCce
Confidence 22 1 12121 11233322 33444444 8899999999 899999998889999999999999999 9999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEEeeecCCCccccCCCCCHHHHHHHH
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 294 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el--~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~ 294 (516)
.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+.+.+++++.+..+..
T Consensus 188 ~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~i 247 (345)
T PRK15108 188 CSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTI 247 (345)
T ss_pred eeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHH
Confidence 99999998 99999999999999999 677888999999999999887777766544333
No 78
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.68 E-value=2.4e-15 Score=156.31 Aligned_cols=214 Identities=20% Similarity=0.211 Sum_probs=153.6
Q ss_pred EEEEEeCCCCCC-CCcCcccC------ccC-CC---------cCCCCHHHHHHHHHHHHhCCCc----EEEEeecCCCCC
Q 010162 80 VEILPINVGCLG-ACTYCKTK------HAR-GH---------LGSYTVESLVGRVRTVIADGVK----EVWLSSEDTGAY 138 (516)
Q Consensus 80 ~a~V~isrGC~~-~CsFC~ip------~~r-G~---------~rsr~~e~Iv~EI~~L~~~Gvk----eI~l~g~n~~~y 138 (516)
.|...--.|||+ +|.||--. ..+ |. .+.-|-.++...+++|...|-. |+.|.|+.|++.
T Consensus 68 VaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~ 147 (515)
T COG1243 68 VAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTAL 147 (515)
T ss_pred EEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCC
Confidence 344444689998 99999643 222 11 1233678888999999887642 688889888876
Q ss_pred CCCcCCCH-HHHHHHHH---------HhCC---CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHH
Q 010162 139 GRDIGVNL-PILLNAIV---------AELP---PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 205 (516)
Q Consensus 139 g~d~~~~l-~eLL~~I~---------~~i~---~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~ 205 (516)
..+....| ...++++. .... .....-+++. +.|+.++++- +..|++.+ ++.+.+|+||..|+
T Consensus 148 ~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlkyG--~TrVELGVQSiyd~ 222 (515)
T COG1243 148 SLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKYG--VTRVELGVQSIYDD 222 (515)
T ss_pred CHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhcC--CcEEEEeeeeHHHH
Confidence 55432111 11222221 0000 0101225554 8899887765 44566655 89999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC---CCeEEEEEeeecCCCccccC
Q 010162 206 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 206 vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~---~d~v~if~~sp~pGTpa~~~ 282 (516)
||++++||||++++.++.+.++++ |+.+..++|.|+||-+.+--.+++..+.+.+ +|.+.|+|....+||++++|
T Consensus 223 Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~m 300 (515)
T COG1243 223 VLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEM 300 (515)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHH
Confidence 999999999999999999999999 9999999999999998875555555555554 89999999999999999998
Q ss_pred C------CCCHHHHHHHHHHHHHH
Q 010162 283 K------KVPSAVVKKRSRELTSV 300 (516)
Q Consensus 283 ~------~v~~~~~~eR~~~L~~l 300 (516)
+ ..+.++.-+...++..+
T Consensus 301 wk~G~Ykpy~~EEaVeli~~i~~~ 324 (515)
T COG1243 301 WKRGLYKPYTTEEAVELIVEIYRL 324 (515)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHh
Confidence 6 36777766666666544
No 79
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.63 E-value=1.5e-14 Score=152.07 Aligned_cols=202 Identities=10% Similarity=0.119 Sum_probs=146.4
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+.+..+.+|+++|.||......+. ....++|+|.++++.+.+.|+++|.++++...... + ...+.++++.+.+..+
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~-~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAA-G-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCC-C-HHHHHHHHHHHHHhCC
Confidence 3445679999999999998653322 23458999999999999999999999975433321 1 1236777777765433
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCE-
Q 010162 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 234 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~~~pGi~- 234 (516)
. ..+.+ .| ++.+- +..+.++| +.++++++||.+++.++.|+ +.|+.++.++.++.++++ |+.
T Consensus 152 ~---i~Iei---~~--lt~e~--~~~Lk~aG--v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 217 (366)
T TIGR02351 152 S---LAIEV---QP--LNEEE--YKKLVEAG--LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRK 217 (366)
T ss_pred c---ccccc---cc--CCHHH--HHHHHHcC--CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 1 11222 22 22222 33344444 78999999999999999987 788999999999999999 996
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCC------CeEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHH
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 299 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~------d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~ 299 (516)
+.+++|+|+| |+.++...++..+++++. ..+.+..+.|.+| |+...+.+++.+..+....++-
T Consensus 218 v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~ 286 (366)
T TIGR02351 218 IGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRL 286 (366)
T ss_pred eceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHH
Confidence 9999999995 577887777777777754 4677778999999 8766667887776655554444
No 80
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.60 E-value=4.8e-14 Score=144.14 Aligned_cols=193 Identities=21% Similarity=0.318 Sum_probs=146.4
Q ss_pred EEEEEeCCCC-CCCCcCcccCccC--C--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 80 VEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 80 ~a~V~isrGC-~~~CsFC~ip~~r--G--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
...|.++.|| |.+|.||...... | ++..+++|+|+++++.+.+.|..++.++..--. ++++ ...+.+.++.+.
T Consensus 51 ~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~-~~~i~~~v~~Vk 128 (335)
T COG0502 51 STLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD-MEEVVEAIKAVK 128 (335)
T ss_pred EEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc-HHHHHHHHHHHH
Confidence 3456666665 9999999886533 2 235678999999999999999666655543222 2222 123556666665
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
+..+. ...+.++.+ +++. +.++.+++ +.+....+++ |++..+.+.-.++.++-.+.++.++++ |+.
T Consensus 129 ~~~~l--e~c~slG~l-----~~eq--~~~L~~aG--vd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi~ 194 (335)
T COG0502 129 EELGL--EVCASLGML-----TEEQ--AEKLADAG--VDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GIE 194 (335)
T ss_pred HhcCc--HHhhccCCC-----CHHH--HHHHHHcC--hhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CCc
Confidence 44432 133444433 2332 23333444 7889999999 999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~-~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
+.+..|+|+ |||.+|-.+.+.++.++. ++.|-|..|.|.||||+++.+.++..+
T Consensus 195 vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e 249 (335)
T COG0502 195 VCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFE 249 (335)
T ss_pred cccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHH
Confidence 999999999 999999999999999998 999999999999999999988887655
No 81
>PRK08444 hypothetical protein; Provisional
Probab=99.60 E-value=3.9e-14 Score=147.81 Aligned_cols=193 Identities=14% Similarity=0.166 Sum_probs=148.3
Q ss_pred EEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
+|.+|.-|..+|.||++....+.. ...++|+|++.++.+.+.|+++|.++++....+.. ..+.++++.|.+.++
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~---e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGY---EWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 567799999999999997544321 24689999999999999999999999864444322 236788888876554
Q ss_pred CCCceEEEeecCCcch----------HHHHHHHHHHHcCCCCccEEEe-cccCCCHHHHHhcCCCC-CHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNPPFI----------LEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNREY-TLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i----------~~~l~eL~~l~~~~~~~~~i~i-GlQSgsd~vLk~MnR~~-t~e~~~~~I~~lr 227 (516)
.+.+....|.++ .++. +..+.+++ ...++- |.|..+|++.+.+...+ +.+++.+.++.++
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~--l~~LkeAG--l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~ 199 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEV--LEDMLEYG--VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWH 199 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHH--HHHHHHhC--cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHH
Confidence 234443333221 1121 33344444 455655 69999999999998755 6689999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec----CCCccccCCCCCHHH
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSAV 289 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~----pGTpa~~~~~v~~~~ 289 (516)
++ |+.+++.+|+|+ |||.+|..+.+..+++++.+..+|..|.|. +|||+...+..+..+
T Consensus 200 ~~--Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e 262 (353)
T PRK08444 200 KK--GKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQE 262 (353)
T ss_pred Hc--CCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHH
Confidence 99 999999999999 599999999999999999999999999999 999998766666554
No 82
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.60 E-value=3.3e-14 Score=149.69 Aligned_cols=188 Identities=18% Similarity=0.270 Sum_probs=139.8
Q ss_pred EEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.|++|.+|+.+|.||.+....+.. ...++|+|++.++.+.+.|++++.|+++.-.... + ...+.++++.+.+.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 467799999999999987653321 2479999999999999999999999986433322 0 1236677777765433
Q ss_pred CCCceEEEeecCC----------cchHHHHHHHHHHHcCCCCccEEE-ecccCCCHHHHHhcCCC-CCHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P----------~~i~~~l~eL~~l~~~~~~~~~i~-iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr 227 (516)
.+.+....| ...+++. +..+.++| +.+++ -+.+..++++.+.+..+ .+.+++++.++.++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~e~--l~~LkeAG--ld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~ 211 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYEEV--LKALKDAG--LDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAH 211 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHHHH--HHHHHHcC--CCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 223322211 1122221 33444444 55554 56777889998888764 58999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC----CCccccCC
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARMK 283 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p----GTpa~~~~ 283 (516)
++ |+.+.+.+|+|+ |||.+|..+.+.++++++.+..++..|.|.| |||++...
T Consensus 212 ~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 212 KL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred Hc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 99 999999999998 9999999999999999999999999999865 99998754
No 83
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.56 E-value=2.8e-13 Score=145.73 Aligned_cols=199 Identities=13% Similarity=0.191 Sum_probs=144.2
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCC-CCCCCCcCCCHHHHHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~-~~yg~d~~~~l~eLL~~I~~ 155 (516)
+.+.|.+|..|+++|.||.+....+.. ...++|+|+++++.+.+.|++++.|+++.. ..+.. ..+.++++.|.+
T Consensus 84 lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~ 160 (469)
T PRK09613 84 LFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYS 160 (469)
T ss_pred EEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHH
Confidence 346677899999999999997654422 356899999999999999999999986533 32222 236677777764
Q ss_pred hCCCCCC-ceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC---CCCHHHHHHHHHHHHHhCC
Q 010162 156 ELPPDGS-TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 156 ~i~~~~~-~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR---~~t~e~~~~~I~~lr~~~p 231 (516)
.....+. ..+.+. +.|.. .+.+ ..+..++ +.++.+-.||.+.+..+.++. .++.++-++++++++++
T Consensus 161 ~~~~~g~i~~v~in-ig~lt-~eey---~~LkeaG--v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a-- 231 (469)
T PRK09613 161 TKHGNGEIRRVNVN-IAPTT-VENY---KKLKEAG--IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA-- 231 (469)
T ss_pred hccccCcceeeEEE-eecCC-HHHH---HHHHHcC--CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--
Confidence 3211111 123332 22211 2333 3344444 789999999999999999864 57899999999999999
Q ss_pred CCE-EEEEEEEcCCCCCHHHHHHHHHHHHhc------CCCeEEEEEeeecCCCccccCC-CCCHHHH
Q 010162 232 GMQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGTPAARMK-KVPSAVV 290 (516)
Q Consensus 232 Gi~-i~td~IvGfPGETeedf~etl~fi~el------~~d~v~if~~sp~pGTpa~~~~-~v~~~~~ 290 (516)
|+. +.+.+|+|++ |+.+|...++..++.+ +++.+.+-.|.|.+|||+.+.+ .++++..
T Consensus 232 Gi~~Vg~G~L~GLg-e~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~ 297 (469)
T PRK09613 232 GIDDVGIGVLFGLY-DYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDF 297 (469)
T ss_pred CCCeeCeEEEEcCC-CCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHH
Confidence 996 9999999985 5666666666666666 5677888889999999998776 5787653
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.55 E-value=1.3e-12 Score=135.39 Aligned_cols=183 Identities=19% Similarity=0.268 Sum_probs=140.1
Q ss_pred EEEEEeCCCCCCCCcCcccCcc---CCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 80 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~---rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
+..|.++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|++.+.+ .++.++++.+.+
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~- 91 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAA- 91 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHh-
Confidence 4568899999999999987542 2345677899999999999889999999999765543 247888888754
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 235 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi-~i 235 (516)
.. +...+.+. ++...+++.+ ..+..++ +..+.++++|.+++..+.++++.+.+++.+.++.++++ |+ .+
T Consensus 92 ~~--~~~~i~it-TNG~ll~~~~---~~L~~ag--l~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 92 LP--GIRDLALT-TNGYLLARRA---AALKDAG--LDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred cC--CCceEEEE-cCchhHHHHH---HHHHHcC--CCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 21 12344443 4443344433 2333343 67899999999999999999999999999999999998 77 66
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
...+++ +||.+.+++.+.+++++++++ .+++..|.|.++...+
T Consensus 162 ~i~~vv-~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~~ 204 (331)
T PRK00164 162 KVNAVL-MKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNEW 204 (331)
T ss_pred EEEEEE-ECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcch
Confidence 666544 689999999999999999987 4788889998765433
No 85
>PRK05926 hypothetical protein; Provisional
Probab=99.55 E-value=3.4e-13 Score=141.54 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=139.7
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
++..|..|+.+|.||++....+. ....++|+|+++++.. +.|+++|.++++..+.+.. ..+.++++.|.+.++
T Consensus 71 nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~---e~~~e~i~~Ik~~~p- 145 (370)
T PRK05926 71 YLYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNL---AYYEELFSKIKQNFP- 145 (370)
T ss_pred eeecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCH---HHHHHHHHHHHHhCC-
Confidence 34469999999999997654443 2356899999999998 6899999999864443322 236788888876654
Q ss_pred CCCceEEEeecCCcch----------HHHHHHHHHHHcCCCCccEEEe-cccCCCHHHHHhcC-CCCCHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNPPFI----------LEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMN-REYTLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i----------~~~l~eL~~l~~~~~~~~~i~i-GlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr 227 (516)
.+.+....+..+ .++. +..+.++| +.+++. |.|+.++++.+.+. +..+.+++++.++.++
T Consensus 146 ----~i~i~a~s~~Ei~~~~~~~~~~~~e~--l~~LkeAG--l~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~ 217 (370)
T PRK05926 146 ----DLHIKALTAIEYAYLSKLDNLPVKEV--LQTLKIAG--LDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAH 217 (370)
T ss_pred ----CeeEEECCHHHHHHHHhhcCCCHHHH--HHHHHHcC--cCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 234433322211 2222 33444444 666765 69999999999886 4668899999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee----cCCCcccc
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAAR 281 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp----~pGTpa~~ 281 (516)
++ |+.+++.+|+| +|||.+|..+.+..+++++.+.++|..|.| -++||+..
T Consensus 218 ~~--Gi~~~sgmi~G-~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 218 SL--GIPSNATMLCY-HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred Hc--CCcccCceEEe-CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 99 99999998888 599999999999999999999999999999 67888764
No 86
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.50 E-value=4.3e-12 Score=131.62 Aligned_cols=193 Identities=17% Similarity=0.231 Sum_probs=141.0
Q ss_pred EEEEEeCCCCCCCCcCcccCcc--CCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 80 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
+..|.++.+||.+|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|+....+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4567889999999999975422 1223467899999999988889999999999665433 247888888754 2
Q ss_pred CCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEE
Q 010162 158 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 236 (516)
Q Consensus 158 ~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi-~i~ 236 (516)
+ +...+.+. ++...+++... .+.+++ +.++.++++|.+++..++++++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~~~---~L~~aG--l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARFAA---ELADAG--LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHHHH---HHHHcC--CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 12244443 55544444332 333343 78999999999999999999988999999999999999 87 676
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHH
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 290 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~ 290 (516)
.++++ +||++.+++.+.++|+.+++++ +.+..|.|..+..-+... .++.++.
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEIDERRRARHCSSDEV 211 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCccchhhccCcCHHHH
Confidence 66554 6899999999999999999986 557778887653322122 4555443
No 87
>PRK05927 hypothetical protein; Provisional
Probab=99.50 E-value=2.7e-13 Score=141.38 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=141.7
Q ss_pred EEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
.+.+|.-|+.+|.||+.....+.. ...++|+|++.++...+.|++++.|+|+.-..++.+ .+.++++.|.+..+.
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e---~~~~~i~~ik~~~p~ 124 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGID---YLEELVRITVKEFPS 124 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHH---HHHHHHHHHHHHCCC
Confidence 466799999999999987643321 256899999999999999999999997655444332 367888888765542
Q ss_pred CCCceEEEeecCC----------cchHHHHHHHHHHHcCCCCccEEE-ecccCCCHHHHHhcCCC-CCHHHHHHHHHHHH
Q 010162 160 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 227 (516)
Q Consensus 160 ~~~~~iri~~~~P----------~~i~~~l~eL~~l~~~~~~~~~i~-iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr 227 (516)
+.+....| ...+++. +..+.++| ..+++ .++|+.++.+.+.+..+ ++.++.++.++.++
T Consensus 125 -----l~~~~~s~~ei~~~~~~~G~~~~e~--l~~Lk~aG--l~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~ 195 (350)
T PRK05927 125 -----LHPHFFSAVEIAHAAQVSGISTEQA--LERLWDAG--QRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH 195 (350)
T ss_pred -----CcccCCCHHHHHHHHHhcCCCHHHH--HHHHHHcC--cccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 11111111 1122222 33444444 45554 48999999999988764 46899999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec----CCCccccCC--CCCHHH
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMK--KVPSAV 289 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~----pGTpa~~~~--~v~~~~ 289 (516)
+. |+.+++.+|+|+ |||.+|..+.+..+++++-+..+|..|.|. +|||+.... ..+..+
T Consensus 196 ~l--Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e 260 (350)
T PRK05927 196 RL--GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPEL 260 (350)
T ss_pred Hc--CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHH
Confidence 99 999999999999 999999999999999998666677777776 789987532 355444
No 88
>PTZ00413 lipoate synthase; Provisional
Probab=99.50 E-value=2.1e-12 Score=133.48 Aligned_cols=180 Identities=16% Similarity=0.238 Sum_probs=137.0
Q ss_pred EEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 010162 81 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 160 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~ 160 (516)
.|+-.+..|+.+|.||++.... .....+++++.+..+...+.|++.+++++.+-..........+.+.+++|.+..+
T Consensus 151 TfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p-- 227 (398)
T PTZ00413 151 TIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNP-- 227 (398)
T ss_pred EeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCC--
Confidence 4566699999999999997543 2355689999999999999999998888753211111111347777777764322
Q ss_pred CCceEEEeecCCcch-HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC-CCCHHHHHHHHHHHHHh-CCCCEEEE
Q 010162 161 GSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQIAT 237 (516)
Q Consensus 161 ~~~~iri~~~~P~~i-~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~-~pGi~i~t 237 (516)
.+.+..+-|+.. +.+. +..+..++ ...++-.+|+ +++.+..++. +++.++.++.|+.+++. .||+.+.+
T Consensus 228 ---~~~IevligDf~g~~e~--l~~L~eAG--~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcS 299 (398)
T PTZ00413 228 ---ELLLEALVGDFHGDLKS--VEKLANSP--LSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKS 299 (398)
T ss_pred ---CCeEEEcCCccccCHHH--HHHHHhcC--CCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEee
Confidence 244555555432 2222 44445554 7899999999 9999999995 68999999999999998 57899999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 010162 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 272 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~el~~d~v~if~~s 272 (516)
.+|+| +|||++|+.++++.+.+++++.+.|.+|-
T Consensus 300 GiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 300 SIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred eeEec-CCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 99999 59999999999999999999999997765
No 89
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.47 E-value=1.2e-11 Score=128.29 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=139.5
Q ss_pred EEEEEeCCCCCCCCcCcccCccC----CCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 80 VEILPINVGCLGACTYCKTKHAR----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~r----G~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
+..|.++.+|+.+|.||...... .+....+.+++.+.++.+.+.|++.|.|+|++.... ..+.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 45678899999999999875411 123567899999999999999999999999765543 247888888754
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
.. +...+.+. ++...+.+.+ ..+.+.+ +.++.++++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~~---~~L~~~g--l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARHA---KDLKEAG--LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHHH---HHHHHcC--CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 22 12245554 4554444433 3334444 679999999999999999985 67999999999999999 886
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 235 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 235 -i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
+...+++ .+|.+.+++.+.++++.+++++ +.+..|.|..++..+
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGW 199 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccc
Confidence 7776654 4899999999999999999975 788889998877544
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.47 E-value=1.3e-11 Score=126.38 Aligned_cols=178 Identities=12% Similarity=0.186 Sum_probs=135.0
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
+..|.++.+||.+|.||..+..... .+..+.|++.+.++.+.+.|++.|.|+|++.+.. ..+.++++.+.+ .+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~-~g 84 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKD-YG 84 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHh-CC
Confidence 4578999999999999987643222 3467899999988888888999999999765543 237788887753 22
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 010162 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 237 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~-i~t 237 (516)
...+.+. ++...+.+.. ..+...+ +.++.++++|.+++..+.++++.+.+++.+.++.++++ |+. +..
T Consensus 85 ---~~~v~i~-TNG~ll~~~~---~~l~~~g--~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 85 ---IKDVSMT-TNGILLEKLA---KKLKEAG--LDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred ---CceEEEE-cCchHHHHHH---HHHHHCC--CCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 2234443 4443333322 2333343 67999999999999999999888999999999999999 875 666
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCC
Q 010162 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 276 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pG 276 (516)
.+++ +||++.+++.+.++++.+++++ +++..|.|...
T Consensus 154 ~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~ 190 (302)
T TIGR02668 154 NMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGE 190 (302)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCC
Confidence 6554 6999999999999999999975 78888888653
No 91
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.46 E-value=8.4e-12 Score=129.01 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=141.0
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I 153 (516)
....+.+.+++||+.+|.||..+...|.. ...+.+++.+-++.+.+. |+++|.|+|+|......+ .+.++++.+
T Consensus 86 yp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~---~L~~ll~~l 162 (321)
T TIGR03822 86 YPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPR---RLGDIMARL 162 (321)
T ss_pred CCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHH---HHHHHHHHH
Confidence 34567889999999999999977654432 344667788777777755 999999999887765322 378888888
Q ss_pred HHhCCCCCCceEEEee----cCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 010162 154 VAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~----~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
.+ ++ ....+|+++ .+|..+++++. ..+.+.+ . .+.+++++.+++-+ .++..++++.++++
T Consensus 163 ~~-i~--~v~~iri~Tr~~v~~p~rit~ell--~~L~~~g--~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~ 226 (321)
T TIGR03822 163 AA-ID--HVKIVRFHTRVPVADPARVTPALI--AALKTSG--K-TVYVALHANHAREL--------TAEARAACARLIDA 226 (321)
T ss_pred Hh-CC--CccEEEEeCCCcccChhhcCHHHH--HHHHHcC--C-cEEEEecCCChhhc--------CHHHHHHHHHHHHc
Confidence 64 43 234677775 36766777663 3334444 2 37899999876543 37899999999999
Q ss_pred CCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 230 VPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 230 ~pGi~i~t-d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
|+.+.. .+++...+++.+++.++.+++.++++...+++.+.|.+||..+ .++.+.
T Consensus 227 --Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f---~~~~~~ 282 (321)
T TIGR03822 227 --GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF---RVTIEE 282 (321)
T ss_pred --CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc---cCcHHH
Confidence 997755 4566557999999999999999999999999999999998655 355444
No 92
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.44 E-value=5.3e-12 Score=144.34 Aligned_cols=185 Identities=14% Similarity=0.263 Sum_probs=137.0
Q ss_pred EEEEeCCCCCCCCcCcccCccCC--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 81 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
..|.+|.+|+.+|.||++....+ .....++|+|+++++...+.|+++|.++|+....+.. ..+.++++.|.+..+
T Consensus 528 ~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~---~~y~~lir~IK~~~p 604 (843)
T PRK09234 528 RNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELPG---TGYADLVRAVKARVP 604 (843)
T ss_pred eceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCH---HHHHHHHHHHHHhCC
Confidence 34667999999999999876532 2234699999999999999999999999753332222 236778888876554
Q ss_pred CCCCceEEEeecCCcch----------HHHHHHHHHHHcCCCCccEEEe-cccCCCHHHHHhcCC-CCCHHHHHHHHHHH
Q 010162 159 PDGSTMLRIGMTNPPFI----------LEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNR-EYTLSDFRTVVDTL 226 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i----------~~~l~eL~~l~~~~~~~~~i~i-GlQSgsd~vLk~MnR-~~t~e~~~~~I~~l 226 (516)
.+.+....|.++ .++. +..+.+++ +..++- +-+-.++++.+.+.. ..+.+++++.++.+
T Consensus 605 -----~i~i~afsp~Ei~~~a~~~Gl~~~e~--l~~LkeAG--Lds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~A 675 (843)
T PRK09234 605 -----SMHVHAFSPMEIVNGAARLGLSIREW--LTALREAG--LDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTA 675 (843)
T ss_pred -----CeeEEecChHHHHHHHHHcCCCHHHH--HHHHHHhC--cCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 233322222111 1222 33444444 555544 566677777766765 45889999999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee----cCCCccc
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAA 280 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp----~pGTpa~ 280 (516)
+++ |+.+++.+|+|+ +||.+++.+.+.++++++.+..+|..|.| .|+||++
T Consensus 676 h~l--Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 676 HEV--GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred HHc--CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 999 999999999997 79999999999999999999888889998 7788885
No 93
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.37 E-value=1.5e-10 Score=122.14 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=138.2
Q ss_pred EEEEEeCCCCCCCCcCcccCccC---CCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 80 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~r---G~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
+..|.++.+|+.+|.||..+... .+....+.+++.+.++.+.+.|++.|.|+|+....+ ..+.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 44578899999999999754211 112357889999999988889999999999654432 237788877753
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 235 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi-~i 235 (516)
++ +...+.+. ++-..+++.+. ++..++ ...+.+.+++.+++..+.+.|+...+.+.+.++.++++ |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~~~---~L~~aG--ld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRKLP---RLKEAG--LTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHHHH---HHHhCC--CCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 32 22234443 44444444443 333443 78899999999999999998888889999999999999 76 45
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHH
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 288 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~ 288 (516)
...+. -++|++.+++.+.++++++.++ .+.+..|.|..|++...-..++..
T Consensus 203 kin~v-v~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~~~~~~~~~ 253 (373)
T PLN02951 203 KVNCV-VMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWNVKKLVPYA 253 (373)
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccccccCCCHH
Confidence 55543 4578999999999999999885 588899999999854322234433
No 94
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.36 E-value=2e-11 Score=139.57 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=141.9
Q ss_pred EEEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCC------------CCc-CCC
Q 010162 81 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 145 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg------------~d~-~~~ 145 (516)
.+|..|..|..+|.||.+....+. ....++|+|++.++...+.|++++.|++++-.... .+. ...
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 477889999999999999765442 34568999999999999999999999986554321 110 012
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc------CCCCCHHHH
Q 010162 146 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM------NREYTLSDF 219 (516)
Q Consensus 146 l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M------nR~~t~e~~ 219 (516)
+.++++.+.++.+. ...+.++.+.+ +++..|. +.+ . ..++.+|+.+++..+.. ..+...++.
T Consensus 153 ~~~~~~~ik~~~gl--~p~i~~G~ls~----~E~~~Lk---~~g--~-s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETGL--LPHLNPGVMSW----SELARLK---PVA--P-SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcCC--CceeeeCCCCH----HHHHHHH---Hhc--C-cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 44555555543221 12344443333 2333233 222 2 24677888888775432 233357778
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEEeeecCCCccccCCCCCHHHHHHHH
Q 010162 220 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 294 (516)
Q Consensus 220 ~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el-----~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~ 294 (516)
++.++.++++ |+.+++.+|+|+ |||.+|..+.+..++++ +|..+-+..|.|.||||+...+..+.++..+-.
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~i 297 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATI 297 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHH
Confidence 9999999999 999999999999 99999999999999999 577788899999999999887777666544433
No 95
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.32 E-value=7.5e-10 Score=115.60 Aligned_cols=183 Identities=20% Similarity=0.307 Sum_probs=128.9
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.....+|.++.||+.+|.||.... .|..|..++++|++++..+.+ .++++|+|+|. |.+. .++.++++.+..
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl-~n~~~vi~~l~~ 173 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPL-ANLDNVIPALQI 173 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----Ccch-hcHHHHHHHHHH
Confidence 356789999999999999998654 455688899999999988765 47999999983 2222 134455544432
Q ss_pred hCCC-CC----CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHHH
Q 010162 156 ELPP-DG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLI 227 (516)
Q Consensus 156 ~i~~-~~----~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr 227 (516)
+.. .+ ...+++++ + .+.+.+.++. ... -..+.+.+.+.+++..+++ +|+++.+++.+++....
T Consensus 174 -l~~~~gl~~s~r~itVsT-n--Gl~~~i~~l~---~~~--~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~ 244 (349)
T PRK14463 174 -LTDPDGLQFSTRKVTVST-S--GLVPEMEELG---REV--TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFP 244 (349)
T ss_pred -hhcccccCcCCceEEEEC-C--CchHHHHHHh---hcc--CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 211 11 12455542 1 2334444333 221 2357789999999999986 89999999999888777
Q ss_pred HhCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 228 ELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 228 ~~~pGi~i~t-d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
+.. +-.+.. +++++-++++++++.+..++++.++. ++++-+|.|.+|.
T Consensus 245 ~~~-~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 245 LPG-RRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred Hhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 652 234444 56666679999999999999999874 7999999988774
No 96
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.32 E-value=2.8e-10 Score=112.07 Aligned_cols=173 Identities=16% Similarity=0.152 Sum_probs=119.1
Q ss_pred EEEeCCCCCCCCcCcccCccCC--CcCCCCHHHHHHHHHHHHhCC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 82 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~EI~~L~~~G---vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
++-++.|||++|.||..+.... ..+..++++++++++.+...+ ...|.|+|++.+.+. + .+.++++.+.+
T Consensus 18 ~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~---~~~~li~~~~~- 92 (235)
T TIGR02493 18 FVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-E---FLSELFKACKE- 92 (235)
T ss_pred EEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-H---HHHHHHHHHHH-
Confidence 4567789999999998764432 124578999999999876542 257999986655431 1 13466666643
Q ss_pred CCCCCCceEEEeecCCc--chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 157 LPPDGSTMLRIGMTNPP--FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~--~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
.+ ..+.+. ++-. .+++.+.++.+ . ...+.+++++.+++..+++++. +.+.+.+.++.+++. |+.
T Consensus 93 ~g----~~~~i~-TNG~~~~~~~~~~~ll~---~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~~ 158 (235)
T TIGR02493 93 LG----IHTCLD-TSGFLGGCTEAADELLE---Y---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NKP 158 (235)
T ss_pred CC----CCEEEE-cCCCCCccHHHHHHHHH---h---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CCc
Confidence 21 123332 2221 12444433332 1 4578999999999998887654 778999999999998 777
Q ss_pred EEEEEEEcCCC--CCHHHHHHHHHHHHhcC-CCeEEEEEeeec
Q 010162 235 IATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYPR 274 (516)
Q Consensus 235 i~td~IvGfPG--ETeedf~etl~fi~el~-~d~v~if~~sp~ 274 (516)
+...+++ +|| ++.+++.+.++|+.+++ ...+++.+|.|.
T Consensus 159 ~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~ 200 (235)
T TIGR02493 159 IWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL 200 (235)
T ss_pred EEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc
Confidence 7666655 375 57899999999999998 567777777764
No 97
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.31 E-value=4.2e-10 Score=117.80 Aligned_cols=189 Identities=18% Similarity=0.237 Sum_probs=129.8
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh------CCCcEEEEeec-CCCCCCCCcCCCHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSE-DTGAYGRDIGVNLPIL 149 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~------~GvkeI~l~g~-n~~~yg~d~~~~l~eL 149 (516)
...+.+|.++.||+.+|.||..+.. |..|..++++|+++|..... .|+..|+|+|. ....+ . ..+.++
T Consensus 107 ~~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln-~---~~v~~~ 181 (356)
T PRK14455 107 YGNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN-Y---DNVMDF 181 (356)
T ss_pred CCceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC-H---HHHHHH
Confidence 3566899999999999999998865 45688899999999986432 36788999883 22221 1 125566
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh---cCCCCCHHHHHHHHHH
Q 010162 150 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDT 225 (516)
Q Consensus 150 L~~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~---MnR~~t~e~~~~~I~~ 225 (516)
++.+.+..+. .+...+.+++. .+.+.+.++. +... -..+.+.+.+.+++..++ ++|+++.+++++.++.
T Consensus 182 l~~l~~~~g~~~s~r~itvsT~---G~~~~i~~l~---d~~l-~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~ 254 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVSTS---GIAPKIYDFA---DEGL-QINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEY 254 (356)
T ss_pred HHHHhcccCcccCCCceEEEec---CchHhHHHHH---hccc-CeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 6665432110 01124444431 1223333332 2221 134779999999999885 6789999999999998
Q ss_pred HHHhCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 226 LIELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 226 lr~~~pGi~i~t-d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
+.+. .+..+.. +++++-.+++++++++..+|++.++ .++++-+|.|.++.++
T Consensus 255 ~~~~-~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 255 YIEK-TNRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHHh-cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 8764 1445554 5666667899999999999999987 6799999999888753
No 98
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.26 E-value=2e-09 Score=113.59 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=133.8
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccC-CCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~r-G~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.+...+++++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|++.+.+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 35677899999999999999865432 223567889888888888888999999998766553 237788877753
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCCE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pGi~ 234 (516)
.+ ..+.+ .++...++++. +..+...+ +..+.+++++.++++.+.+++. .+.+.+.+.++.+++. |+.
T Consensus 89 -~g----~~~~i-~TNG~ll~~~~--~~~L~~~g--~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~ 156 (378)
T PRK05301 89 -LG----LYTNL-ITSGVGLTEAR--LAALKDAG--LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYP 156 (378)
T ss_pred -cC----CcEEE-ECCCccCCHHH--HHHHHHcC--CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCc
Confidence 21 22333 35665666655 33333333 6789999999999999887654 4899999999999998 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp 273 (516)
+...+. ++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 157 v~i~~v--v~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 157 LTLNAV--IHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred eEEEEE--eecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 666554 4788999999999999999999888766544
No 99
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.23 E-value=2.9e-09 Score=110.41 Aligned_cols=196 Identities=15% Similarity=0.267 Sum_probs=133.7
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.+.+.+|.++-||+.+|.||..... |..|..++++|++++..+.+. +++.|+|+|. |.+. .++.++++.+..
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL-~N~d~vi~al~~ 173 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPL-DNLDEVLKALEI 173 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCc-ccHHHHHHHHHH
Confidence 3567899999999999999998764 556778999999999987543 6899999982 2322 234555555432
Q ss_pred hCCCCC----CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC---CCCCHHHHHHHHHHHHH
Q 010162 156 ELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIE 228 (516)
Q Consensus 156 ~i~~~~----~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~ 228 (516)
.....+ ...+.+++. .+.+.+.++.. .. -..+.+.+-|.+++..+.+. +.|+.+++.++++...+
T Consensus 174 l~~~~g~~~s~r~ItVsT~---G~~~~i~~l~~---~~--~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~ 245 (345)
T PRK14466 174 LTAPYGYGWSPKRITVSTV---GLKKGLKRFLE---ES--ECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDF 245 (345)
T ss_pred HhhccccCcCCceEEEEcC---CCchHHHHHhh---cc--CcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 111011 135555533 22333333322 12 13678999999999988764 66889999999988766
Q ss_pred hCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHH
Q 010162 229 LVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292 (516)
Q Consensus 229 ~~pG-i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~e 292 (516)
...+ +.+..-+|=|+ ++++++..+..++++.++ .++++-+|.|.||.+ +..++++..++
T Consensus 246 ~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~---~~~~s~~~~~~ 305 (345)
T PRK14466 246 SKQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVD---LEGSDMARMEA 305 (345)
T ss_pred hhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCC---CcCCCHHHHHH
Confidence 5333 34444555554 899999999999999887 789999999999963 33455444333
No 100
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.20 E-value=6.4e-09 Score=111.93 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=138.3
Q ss_pred eEEEEEeCCCCCCCCcCcccCcc-----C-CC-cCCCCHHHHHHHHHHHHhC--CCcEEEEee-cCCCCCCCCcCCCHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHA-----R-GH-LGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLPI 148 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~-----r-G~-~rsr~~e~Iv~EI~~L~~~--GvkeI~l~g-~n~~~yg~d~~~~l~e 148 (516)
.+..+.++.||+.+|.||...+. + |. .+..+++++++.++.+.+. +.+.|.|+| ++...+. ....+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~----e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI----GKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc----cccHH
Confidence 35678999999999999986432 1 21 2457899999999988764 567788888 4433321 12456
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc-------CCCCC------
Q 010162 149 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT------ 215 (516)
Q Consensus 149 LL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M-------nR~~t------ 215 (516)
+++.+.+..+. ..+.++ ++-..+.+.+.+|. ..+ +.++.+.+-+.++++.+.+ +|.++
T Consensus 100 ~l~~~~~~~~~---i~i~ls-TNG~~l~e~i~~L~---~~g--vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 100 TLELVARQLPD---VKLCLS-TNGLMLPEHVDRLV---DLG--VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred HHHHHHHhcCC---CeEEEE-CCCCCCHHHHHHHH---HCC--CCeEEEeccCCCHHHHhhcchhhccccccccCcchHH
Confidence 66666654331 234443 33322334444333 333 6799999999999998875 23343
Q ss_pred --HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC--CCcccc--CCCCCHHH
Q 010162 216 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GTPAAR--MKKVPSAV 289 (516)
Q Consensus 216 --~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p--GTpa~~--~~~v~~~~ 289 (516)
.+..++.++.+.+. |+.+...+++ +||.+++++.+..+++++++...+++.+|.|.| ||++.- ++.++.++
T Consensus 171 il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~ 247 (442)
T TIGR01290 171 LLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDE 247 (442)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHH
Confidence 34556888888888 8876655443 488899999999999999998889999999888 987532 23455555
Q ss_pred HHHHHHHHHHHH
Q 010162 290 VKKRSRELTSVF 301 (516)
Q Consensus 290 ~~eR~~~L~~l~ 301 (516)
..+-.+.+....
T Consensus 248 l~~~~~~~~~~~ 259 (442)
T TIGR01290 248 LAALRDRLEMGT 259 (442)
T ss_pred HHHHHHHHHhhh
Confidence 444444444433
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.19 E-value=6.3e-09 Score=109.02 Aligned_cols=176 Identities=12% Similarity=0.158 Sum_probs=129.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCC-CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
+...+++++..|+.+|.||..+.... +....+.+++.+-++.+.+.|+..|.|+|++.+.. .++.++++.+.+
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~- 79 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARR- 79 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHH-
Confidence 34578999999999999998753222 23456788888888888888999999998766543 237788887754
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCCEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pGi~i 235 (516)
.+ ..+.+ .++...++++. +..+.+.+ +..|.+++++.++++..++++. .+.+.+.+.++.++++ |+.+
T Consensus 80 ~g----~~~~l-~TNG~ll~~e~--~~~L~~~g--~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 80 LG----LYTNL-ITSGVGLTEAR--LDALADAG--LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred cC----CeEEE-EeCCccCCHHH--HHHHHhCC--CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 21 23333 34555555555 23333443 6789999999999998888653 3678899999999998 8876
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 272 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~s 272 (516)
...+. ++.++.+++.+.++++.+++++.+.+....
T Consensus 149 ~v~~v--v~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 149 TLNFV--IHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred EEEEE--eccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 65554 468899999999999999999988876543
No 102
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.18 E-value=6.6e-09 Score=109.10 Aligned_cols=186 Identities=14% Similarity=0.260 Sum_probs=128.5
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHH--------HhCCCcEEEEeecCCCCCCCCcC--CCH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSSEDTGAYGRDIG--VNL 146 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L--------~~~GvkeI~l~g~n~~~yg~d~~--~~l 146 (516)
....+.|.++-||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+|. |.... .++
T Consensus 119 ~~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGm-----GEPLln~d~v 192 (368)
T PRK14456 119 ERMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGM-----GEPLLNTDNV 192 (368)
T ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCc-----CccccCHHHH
Confidence 3566789999999999999997644 556778899999998543 2357899999982 33321 125
Q ss_pred HHHHHHHHHh-CCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCc-cEEEecccCCCHHHHHhc---C-CCCCHHHH
Q 010162 147 PILLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAM---N-REYTLSDF 219 (516)
Q Consensus 147 ~eLL~~I~~~-i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~-~~i~iGlQSgsd~vLk~M---n-R~~t~e~~ 219 (516)
.++++.+.+. ... -+...+.+++. .+.+.+.+|. +.+ . ..+.+.+.|.+++..+.+ + |+|+.+++
T Consensus 193 ~~~i~~l~~~~~~~~is~r~ItisT~---Gl~~~i~~L~---~~g--l~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l 264 (368)
T PRK14456 193 FEAVLTLSTRKYRFSISQRKITISTV---GITPEIDRLA---TSG--LKTKLAVSLHSADQEKRERLMPQAARDYPLDEL 264 (368)
T ss_pred HHHHHHHhccccccCcCcCeeEEECC---CChHHHHHHH---HcC--CCceEEEEecCCCHHHHHHhccccCCCCCHHHH
Confidence 6666655432 110 01234555432 2444444343 333 4 379999999999999876 3 58999999
Q ss_pred HHHHHH-HHHhCCCCE--EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 220 RTVVDT-LIELVPGMQ--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 220 ~~~I~~-lr~~~pGi~--i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
.++++. +++. |.. +..-+|=|+ .++++++.+.++|++.+. -++++-+|.|.++.+..
T Consensus 265 ~~~i~~~~~~~--g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~~ 324 (368)
T PRK14456 265 REALIGYASKT--GEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKFE 324 (368)
T ss_pred HHHHHHHHHhc--CCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCCC
Confidence 999985 4444 544 445555554 699999999999999885 57899999999887643
No 103
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.17 E-value=1.7e-09 Score=106.59 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=141.2
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
+.-.|+-.+.=|.++|.||.+...+ ....++++-.+-++...+.|.+.+++++.|-..........|++.+++|.+..
T Consensus 69 ~tATFmImG~~CTR~C~FC~V~~g~--P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~ 146 (306)
T COG0320 69 GTATFMILGDICTRRCRFCDVKTGR--PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELN 146 (306)
T ss_pred CceEEeeccchhccCCCccccCCCC--CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhC
Confidence 3334667788899999999996554 44445555444445555679999999975433322211246899999997654
Q ss_pred CCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 010162 158 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237 (516)
Q Consensus 158 ~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~t 237 (516)
+ .+.+..+-|++.-. ...+..+++++ -.-+.-.+|+. +++...++++.+.+.-+++++.+++..|.+...+
T Consensus 147 P-----~t~iEvL~PDF~G~-~~al~~v~~~~--pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKS 217 (306)
T COG0320 147 P-----QTTIEVLTPDFRGN-DDALEIVADAG--PDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPTKS 217 (306)
T ss_pred C-----CceEEEeCccccCC-HHHHHHHHhcC--cchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCccccc
Confidence 3 34566667765421 11122333332 22334455653 4556677888999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHH
Q 010162 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~ 304 (516)
.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.. | | -+.-+|-.-+.-+-++++.+...++
T Consensus 218 giMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S--~~HlpV~ryv~PeeF~~~~~~a~~~ 279 (306)
T COG0320 218 GLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-S--RKHLPVQRYVTPEEFDELEEVAEEM 279 (306)
T ss_pred ceeeec-CCcHHHHHHHHHHHHHcCCCEEEeccccC-C-c--cccCCceeccCHHHHHHHHHHHHHc
Confidence 999999 99999999999999999999999999862 2 1 1111222222223356666666554
No 104
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.17 E-value=2.5e-09 Score=111.14 Aligned_cols=187 Identities=16% Similarity=0.218 Sum_probs=130.1
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
...+++.++.||+.+|.||..+...+.....+.+++.+.++.+.+. |+++|.|+|+|......+ .+.++++.+.+
T Consensus 112 ~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~---~L~~ll~~L~~- 187 (331)
T TIGR00238 112 VNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKDH---ELEWLLKRLEE- 187 (331)
T ss_pred CCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCHH---HHHHHHHHHHh-
Confidence 4467899999999999999976554332333367777777777654 899999999887654321 27788888764
Q ss_pred CCCCCCceEEEeecC----CcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 157 LPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 157 i~~~~~~~iri~~~~----P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
++ ....+|+++.. |..+++++.++. .+.+ +..+.+..-...+++ .++..++++.++++ |
T Consensus 188 i~--~~~~IRi~tr~~~~~P~rit~el~~~L--~~~~--~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a--G 250 (331)
T TIGR00238 188 IP--HLVRLRIGTRLPVVIPQRITDELCELL--ASFE--LQLMLVTHINHCNEI---------TEEFAEAMKKLRTV--N 250 (331)
T ss_pred cC--CccEEEeecCCCccCchhcCHHHHHHH--HhcC--CcEEEEccCCChHhC---------CHHHHHHHHHHHHc--C
Confidence 43 24578887643 455677664433 2323 445555544444331 27789999999999 8
Q ss_pred CEE--EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 233 MQI--ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 233 i~i--~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
+.+ .+-++-|. .++.+++.+..+.+.++++...++|.+.|..|+.-+ .+|.+.
T Consensus 251 i~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f---~~~~~~ 305 (331)
T TIGR00238 251 VTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF---LVPDAE 305 (331)
T ss_pred CEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc---cCCHHH
Confidence 854 45556565 788899999999999999998999999999998333 556544
No 105
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.15 E-value=2.8e-09 Score=102.03 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=142.7
Q ss_pred EeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCc
Q 010162 84 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 163 (516)
Q Consensus 84 ~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~ 163 (516)
-+++-|..+|..|.-.+.++... -+-++++.+...+.+.|+..+.+.|+- .+-|.=-.+.+.+.|+++.+..+- ..
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi~-vt~~~l~k~~~el~kkGy~g~llSGGm-~srg~VPl~kf~d~lK~lke~~~l--~i 91 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMIK-VTTKSLLKRCMELEKKGYEGCLLSGGM-DSRGKVPLWKFKDELKALKERTGL--LI 91 (275)
T ss_pred EeccceEecChHHHHHHHHHhcc-cchHHHHHHHHHHHhcCceeEEEeCCc-CCCCCccHHHHHHHHHHHHHhhCe--EE
Confidence 46888999999999888766442 234899999999999999999998852 222221125678888888765331 12
Q ss_pred eEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh-cCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 010162 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242 (516)
Q Consensus 164 ~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~-MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvG 242 (516)
....++. ++.. +.++..+. +.-+.+-+=+ |++++++ .+-+.++++|.+.++.+++. |+.+..++++|
T Consensus 92 naHvGfv-----dE~~--~eklk~~~--vdvvsLDfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 92 NAHVGFV-----DESD--LEKLKEEL--VDVVSLDFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred EEEeeec-----cHHH--HHHHHHhc--CcEEEEeecC-ChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 3333333 3322 22222222 4556666644 5566665 45577999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHHHHH
Q 010162 243 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 296 (516)
Q Consensus 243 fPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~ 296 (516)
+.+-.-+-=.+.++.+.+..+|.+-+..+.|.|||.+.+.+++|.++..+-.+.
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~ 213 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKY 213 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHH
Confidence 988776666688999999999999999999999999999887776664444433
No 106
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.14 E-value=1.6e-09 Score=113.66 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=132.4
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
..+|..++=|.++|+||++....+.. ...++|+|.++++.+.+.|++|+.|+++....++.+. +.++++.+.+..
T Consensus 60 n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y---~~~~~~~ik~~~ 136 (370)
T COG1060 60 NRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEY---YEELFRTIKEEF 136 (370)
T ss_pred eecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHH---HHHHHHHHHHhC
Confidence 34677899999999999997765332 3568999999999999999999999998766665443 677777777654
Q ss_pred CCCCCceEEEeecCCcchHH-------HHHH-HHHHHcCCCCccE-EEecccCCCHHHHHhcC-CCCCHHHHHHHHHHHH
Q 010162 158 PPDGSTMLRIGMTNPPFILE-------HLKE-IAEVLRHPCVYSF-LHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLI 227 (516)
Q Consensus 158 ~~~~~~~iri~~~~P~~i~~-------~l~e-L~~l~~~~~~~~~-i~iGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr 227 (516)
+. +.+....+..+.. ...| +..+.+++ +.. ..-|-+=.++++.+.+. .+.+.+.++++++.+.
T Consensus 137 p~-----~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aG--ldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah 209 (370)
T COG1060 137 PD-----LHIHALSAGEILFLAREGGLSYEEVLKRLKEAG--LDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH 209 (370)
T ss_pred cc-----hhhcccCHHHhHHHHhccCCCHHHHHHHHHHcC--CCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 42 1221122211100 0111 33333333 333 33444556777766654 4569999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeecCCC-ccccCCC
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGT-PAARMKK 284 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~-----~d~v~if~~sp~pGT-pa~~~~~ 284 (516)
++ ||..++.+++|. +||.+|..+++..+++++ +..+.+-.|.|.+++ ++..+++
T Consensus 210 ~l--GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~ 269 (370)
T COG1060 210 RL--GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPE 269 (370)
T ss_pred Hc--CCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCC
Confidence 99 999999999998 999999999999999883 334444456677776 4444443
No 107
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.14 E-value=5.9e-08 Score=97.67 Aligned_cols=265 Identities=15% Similarity=0.214 Sum_probs=167.0
Q ss_pred EEeCCCCCCCCcCcccCc---cCCCc--CCCCHHHHHHHHHHHHhC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 83 LPINVGCLGACTYCKTKH---ARGHL--GSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 83 V~isrGC~~~CsFC~ip~---~rG~~--rsr~~e~Iv~EI~~L~~~--GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
|.=+.||+.+|-||++.- .|-+. -.-.+|.+++.++..++. +.-|..+=||.-+.. ...+.++++++.+
T Consensus 111 VRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~ 186 (414)
T COG2100 111 VRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKE 186 (414)
T ss_pred ecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhc
Confidence 344889999999999842 22111 122589999999888774 334666666522211 1347888888864
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc-C-CCCCHHHHHHHHHHHHHhCCCC
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-N-REYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M-n-R~~t~e~~~~~I~~lr~~~pGi 233 (516)
++. ...+.+- ++-..+++++ +.++.+++ ..++.+++.|.|++.-|.| + +-|+++.+++..+.+.+. +|
T Consensus 187 -~~~--v~vVSmQ-Tng~~L~~~l--v~eLeeAG--LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a--~i 256 (414)
T COG2100 187 -HKG--VEVVSMQ-TNGVLLSKKL--VDELEEAG--LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA--GI 256 (414)
T ss_pred -CCC--ceEEEEe-eCceeccHHH--HHHHHHhC--CceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--CC
Confidence 432 2333332 4555566666 33444554 8999999999999998865 4 468999999999999998 87
Q ss_pred EE-EEEEEEcCCCCCHHHHHHHHHHHHhcCC----CeEEEEEeeecCC-CccccCCCCCHHHHHHHHHHHHHHHHHHh--
Q 010162 234 QI-ATDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYPRPG-TPAARMKKVPSAVVKKRSRELTSVFEAFT-- 305 (516)
Q Consensus 234 ~i-~td~IvGfPGETeedf~etl~fi~el~~----d~v~if~~sp~pG-Tpa~~~~~v~~~~~~eR~~~L~~l~~~~~-- 305 (516)
.+ -+=++ +||-+++++...++|+.+++. ..+.+..|.|+.- -....+...| .++.++.|.++-++..
T Consensus 257 dvlIaPv~--lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~---fkeFYrwLrelEketg~k 331 (414)
T COG2100 257 DVLIAPVW--LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWP---FKEFYRWLRELEKETGVK 331 (414)
T ss_pred CEEEeeee--cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCc---HHHHHHHHHHHHHHhCCC
Confidence 43 33333 588999999999999999953 2455666766542 2112222334 4556666666665421
Q ss_pred -----------------hhhcCCCcEEEEEE--EEEecCCceEEEeccCcEEEEECCC--CCCCCCeEEEEEEEeecceE
Q 010162 306 -----------------PYLGMEGRVERIWI--TEIAADGIHLVGHTKGYVQVLVPST--GNMLGTSALVKITSVGRWSV 364 (516)
Q Consensus 306 -----------------~~~~~vG~~~~vlv--e~~~~~~~~~~gr~~~~~~v~~~~~--~~~~G~~~~v~I~~~~~~~l 364 (516)
...-..|.+..+.| ++..++ .+.|...+-..-++... ...+|+.|+|+|+.....-.
T Consensus 332 pLilkP~~fG~~pRp~lp~PF~rGevv~aevV~~Gr~kG--EmlavArdRvIav~~~~~~~~~vG~~vkvrIvr~khnI~ 409 (414)
T COG2100 332 PLILKPGEFGMHPRPRLPKPFKRGEVVKAEVVLPGRLKG--EMLAVARDRVIAVINSNEGALLVGDRVKVRIVRTKHNIY 409 (414)
T ss_pred ccccChhhcCCCcCCCCCCccccCcEEEEEEEecceecc--eEEEEecccEEEEecCchhhhccCceEEEEEEEccCceE
Confidence 01224677765443 333222 25565553332222222 35789999999999888777
Q ss_pred EEEE
Q 010162 365 FGEV 368 (516)
Q Consensus 365 ~g~~ 368 (516)
+|.+
T Consensus 410 Ia~p 413 (414)
T COG2100 410 IAVP 413 (414)
T ss_pred Eeee
Confidence 7764
No 108
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.13 E-value=8.5e-09 Score=102.45 Aligned_cols=178 Identities=14% Similarity=0.137 Sum_probs=115.9
Q ss_pred EEEEeCCCCCCCCcCcccCccC--CCcCCCCHHHHHHHHHHHHh---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 81 EILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 81 a~V~isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.++....|||.+|.||..+... ...+..++++|+++++.... .....|.|+|++.+.+ .+ .+.++++.+.+
T Consensus 22 ~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-~~---~~~~l~~~~k~ 97 (246)
T PRK11145 22 RFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-AE---FVRDWFRACKK 97 (246)
T ss_pred EEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-HH---HHHHHHHHHHH
Confidence 4566789999999999976432 12345789999999987643 2335688888655432 11 13466666643
Q ss_pred hCCCCCCceEEEeecCCcc--hHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 156 ELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~--i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
.+ ..+.+. ++-.. ..+.+.++. . .+..+.+++.+.+++..+.+.. .+.+..++.++.+++. |+
T Consensus 98 -~g----~~i~l~-TNG~~~~~~~~~~~ll---~---~~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~--g~ 162 (246)
T PRK11145 98 -EG----IHTCLD-TNGFVRRYDPVIDELL---D---VTDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKR--NQ 162 (246)
T ss_pred -cC----CCEEEE-CCCCCCcchHHHHHHH---H---hCCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhC--CC
Confidence 21 123332 22111 223333322 2 1467899999999998887754 3557788888899988 66
Q ss_pred EE--EEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeecCCCc
Q 010162 234 QI--ATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 278 (516)
Q Consensus 234 ~i--~td~IvGfPGETeedf~etl~fi~el~-~d~v~if~~sp~pGTp 278 (516)
.+ .+-+|-|+ .++++++++.++|+++++ +..+++.+|.|.++.+
T Consensus 163 ~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 163 KTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred cEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 54 44444443 456679999999999985 5788888998877653
No 109
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.12 E-value=8.1e-09 Score=98.47 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=112.0
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCC--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
...+++.+++|||.+|.||..+.... .....++++++++++... ..++.|.|+|++...+. ++.++++.+.+
T Consensus 15 g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~~-----~l~~li~~~~~ 88 (191)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQA-----GLPDFLRKVRE 88 (191)
T ss_pred CCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECCcccCcH-----hHHHHHHHHHH
Confidence 44467788999999999999874322 234678999999998752 34688999987655432 26788887754
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHH-HHHHHHHHHHHhCCCC-
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM- 233 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e-~~~~~I~~lr~~~pGi- 233 (516)
.+ ..+.+. ++.. ..+. +.++...+ ...++.+++++.++...+.++++.+.+ ++.+.++.+++. |+
T Consensus 89 -~g----~~v~i~-TNg~-~~~~---l~~l~~~g-~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~ 155 (191)
T TIGR02495 89 -LG----FEVKLD-TNGS-NPRV---LEELLEEG-LVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIP 155 (191)
T ss_pred -CC----CeEEEE-eCCC-CHHH---HHHHHhcC-CCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCC
Confidence 22 244443 2222 1222 33344433 247899999997666677777665554 899999999998 66
Q ss_pred -EEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 234 -QIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 234 -~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
.+++.++-|+.. ++++.+.++++.+.+
T Consensus 156 ~~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 156 FELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 455555556543 679999999999887
No 110
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.12 E-value=1.2e-08 Score=106.43 Aligned_cols=191 Identities=16% Similarity=0.275 Sum_probs=128.4
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLN 151 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~--~~l~eLL~ 151 (516)
.+...+|.++-||+.+|.||..+.. |..|..++++|++++..+.+. ++..|+|.|. |.... ..+.+.++
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~ 172 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIR 172 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHH
Confidence 4567899999999999999987653 555778999999999887642 5788999982 32221 12344444
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHH-c-CCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHH-
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R-HPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT- 225 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~-~-~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~- 225 (516)
.+.+.++ -+...+.+++.- +.+.+.++.... . -+..-..+.+.+-+.+++..+++ ++.|+.+++.+++..
T Consensus 173 ~l~~~~~-i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y 248 (345)
T PRK14457 173 CLNQDLG-IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHY 248 (345)
T ss_pred HHhcccC-CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 4432221 112366666532 223333333211 0 00011257899999999999876 467888888877755
Q ss_pred HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 226 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 226 lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
+.+.-..+.+..-+|=|+ .+++++++++.+|++.++. ++++-+|.|.++.++
T Consensus 249 ~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~ 300 (345)
T PRK14457 249 VAITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF 300 (345)
T ss_pred HHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC
Confidence 445422356777777776 7999999999999999964 799999999887643
No 111
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=2.5e-08 Score=103.99 Aligned_cols=191 Identities=18% Similarity=0.290 Sum_probs=124.1
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh----CCCcEEEEeecCCCCCCCCcC--CCHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILL 150 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~----~GvkeI~l~g~n~~~yg~d~~--~~l~eLL 150 (516)
.+.+.+|.++.||+.+|.||..+.. |..|..+.++|++++..+.. .++..|+|.|- |.... ..+.+++
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~~-G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGm-----GEPL~N~d~v~~~l 170 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAKD-GLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGM-----GEPLANYENVRKAV 170 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCCC-CCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEcc-----ChhhcCHHHHHHHH
Confidence 3567899999999999999998743 65688899999999987654 35788999882 33221 1234444
Q ss_pred HHHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHH
Q 010162 151 NAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 226 (516)
Q Consensus 151 ~~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~l 226 (516)
+.+.+..+. -....+.+++. .+.+.+.++....-.+. + .+.+.+-+.+++..+++ ++.++.+++.++++..
T Consensus 171 ~~l~~~~gl~~~~r~itvsT~---G~~~~i~~l~~~~~l~~-v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~ 245 (348)
T PRK14467 171 QIMTSPWGLDLSKRRITISTS---GIIHQIKRMAEDPVMPE-V-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQY 245 (348)
T ss_pred HHHcChhccCcCCCcEEEECC---CChhHHHHHHhhccccC-e-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHH
Confidence 444321110 01125666543 12233332221000011 2 46699999999998865 4567888888887765
Q ss_pred H-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeecCCCcc
Q 010162 227 I-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPA 279 (516)
Q Consensus 227 r-~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~-~d~v~if~~sp~pGTpa 279 (516)
. +....+.+..-+|=|+ .++++++++..+|++.++ ..++++-+|.|.|+.++
T Consensus 246 ~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 246 PLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred HHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 5 3312344555555554 688999999999999984 56799999999888754
No 112
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=2.8e-08 Score=103.56 Aligned_cols=189 Identities=17% Similarity=0.319 Sum_probs=133.1
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-----------------CCcEEEEeecCCCCCC
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-----------------GVKEVWLSSEDTGAYG 139 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-----------------GvkeI~l~g~n~~~yg 139 (516)
...+..|.++-||+.+|.||+.... |-.|..++.+|++++..+.+. .++.|+|.|. |
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----G 178 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTL-GLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----G 178 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCC-CcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----C
Confidence 3567899999999999999987544 667999999999999876431 2678888884 4
Q ss_pred CCcCCCHHHHHHHHHHhCCCC----CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CC
Q 010162 140 RDIGVNLPILLNAIVAELPPD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NR 212 (516)
Q Consensus 140 ~d~~~~l~eLL~~I~~~i~~~----~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR 212 (516)
... .++..+++.+....... +...+.+++. .+.+.++++.+ .. .-..+.+.+-+.+|+..+.+ ||
T Consensus 179 EPL-~NydnV~~ai~il~d~~g~~is~R~ITVST~---Givp~I~~la~---~~-~~v~LAiSLHA~~~e~R~~lmPin~ 250 (371)
T PRK14461 179 EPF-ANYDRWWQAVERLHDPQGFNLGARSMTVSTV---GLVKGIRRLAN---ER-LPINLAISLHAPDDALRSELMPVNR 250 (371)
T ss_pred Cch-hhHHHHHHHHHHhcCccccCcCCCceEEEee---cchhHHHHHHh---cc-cCceEEEEeCCCCHHHHHHhcCccc
Confidence 432 34556666654211111 1245666654 33455554443 21 12468899999999998763 79
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeecCCCccc
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~i~-td~IvGfPGETeedf~etl~fi~el~-----~d~v~if~~sp~pGTpa~ 280 (516)
.|..+++.++++..-+. .+-.++ -++++.--.+++++..+..++++.++ .-+|++-+|.|.||+++.
T Consensus 251 ~ypl~eLl~a~~~y~~~-t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 251 RYPIADLMAATRDYIAK-TRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCCHHHHHHHHHHHHHh-hCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 99999999999888654 243332 34455555899999999999999873 368999999999999744
No 113
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=2.4e-08 Score=103.80 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLN 151 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~--~~l~eLL~ 151 (516)
.+....|..+.||+.+|.||..... |-.|..++++|++++..+.+. .++.|+|+|. |.... ..+.++++
T Consensus 95 ~~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~ 168 (336)
T PRK14470 95 THHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAY 168 (336)
T ss_pred CCCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHH
Confidence 3567899999999999999998754 445677899999999876543 5789999983 33321 12444444
Q ss_pred HHHHhCC-CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHHH
Q 010162 152 AIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLI 227 (516)
Q Consensus 152 ~I~~~i~-~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr 227 (516)
.+..... ......+.+++.-. .+.+.++. ..+. -..|.+.+.+.+++..+.+ +++++.++++++++.+.
T Consensus 169 ~l~~~~~~~~~~~~ItVsTnG~---~p~i~~l~---~~~~-~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~ 241 (336)
T PRK14470 169 ALCDPAGARIDGRRISISTAGV---VPMIRRYT---AEGH-KFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHA 241 (336)
T ss_pred HHhCccccccCCCceEEEecCC---hHHHHHHH---hcCC-CceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHH
Confidence 4432100 01124566654322 23333332 2232 2469999999999999887 45689999999999998
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCC
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 276 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pG 276 (516)
+....+.+..-+|-|+ .+++++.++..++++.+. -++++-+|.|.++
T Consensus 242 ~~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~-~~vnlI~~N~~~~ 288 (336)
T PRK14470 242 ALRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIP-VRLNPIAVNDATG 288 (336)
T ss_pred HhCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCC-CeEEEeccCCCCC
Confidence 8733345666667676 688999999999999875 4788889998655
No 114
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.09 E-value=2.5e-08 Score=104.03 Aligned_cols=184 Identities=15% Similarity=0.224 Sum_probs=127.1
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCC--CcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~G--vkeI~l~g-~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.++.|.++.||+.+|.||..+.. |..|..+.++|++++..+...| ++.|+|+| +....+ . ++.+.++.+.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-~----~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-P----ELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-H----HHHHHHHHHhc
Confidence 67889999999999999998854 6678889999999999776655 88999999 443332 1 24555554432
Q ss_pred hCCCC--CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHHHH-h
Q 010162 156 ELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE-L 229 (516)
Q Consensus 156 ~i~~~--~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~-~ 229 (516)
.... +...+.+++.- +.+.+..+.+... ...+.+.+-+.+++..+++ ++.+..+++.++++...+ .
T Consensus 174 -~~~~~~~~r~itVsT~G---~~~~i~~l~~~~~----~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~ 245 (347)
T PRK14453 174 -PNLFGLSQRRITISTIG---IIPGIQRLTQEFP----QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHT 245 (347)
T ss_pred -ccccCCCCCcEEEECCC---CchhHHHHHhhcc----CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhc
Confidence 1111 22345555432 1222333433221 1345668889999887653 567888888777666554 3
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC----CCeEEEEEeeecCCC
Q 010162 230 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGT 277 (516)
Q Consensus 230 ~pGi~i~td~IvGfPGETeedf~etl~fi~el~----~d~v~if~~sp~pGT 277 (516)
...+.+..-+|=|+ .++++++++.++|++.++ +.++++-+|.|.++.
T Consensus 246 ~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 246 GRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC
Confidence 22456777778777 799999999999999884 578999999998874
No 115
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=3.1e-08 Score=103.76 Aligned_cols=186 Identities=17% Similarity=0.308 Sum_probs=122.3
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHH---HHh-C--C---CcEEEEeecCCCCCCCCcC--CCH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT---VIA-D--G---VKEVWLSSEDTGAYGRDIG--VNL 146 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~---L~~-~--G---vkeI~l~g~n~~~yg~d~~--~~l 146 (516)
.....|..+.||+.+|.||..+.. |..|..++++|++++.. ..+ . | ++.|+|+|. |.... ..+
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm-----GEPLln~~~v 174 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM-----GEPLLNLDEV 174 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC-----CcccCCHHHH
Confidence 566789999999999999987643 44578899999999943 332 2 3 678888883 33221 113
Q ss_pred HHHHHHHHHhCCCC-CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC---CCCCHHHHHHH
Q 010162 147 PILLNAIVAELPPD-GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTV 222 (516)
Q Consensus 147 ~eLL~~I~~~i~~~-~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn---R~~t~e~~~~~ 222 (516)
.+.++.+.+..+.. ....+.+++.- +.+.+.+| ...+ ...+.+.+.|.+++..+++. +.++.+++.++
T Consensus 175 ~~~l~~l~~~~Gl~~~~r~itvsT~G---~~~~i~~L---~~~~--l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~a 246 (354)
T PRK14460 175 MRSLRTLNNEKGLNFSPRRITVSTCG---IEKGLREL---GESG--LAFLAVSLHAPNQELRERIMPKAARWPLDDLIAA 246 (354)
T ss_pred HHHHHHHhhhhccCCCCCeEEEECCC---ChHHHHHH---HhCC--CcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHH
Confidence 34444443211100 01245554321 23333333 3333 46899999999999998774 35788888887
Q ss_pred HHHHHH-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 223 VDTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 223 I~~lr~-~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
++.... ....+.+..-+| .-.+++++++++.++|++.++. ++++-+|.|.+|.++
T Consensus 247 l~~~~~~~~~~v~iey~LI-~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y 302 (354)
T PRK14460 247 LKSYPLKTRERVTFEYLLL-GGVNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY 302 (354)
T ss_pred HHHHHHhcCCeEEEEEEEE-CCCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC
Confidence 775443 311234444444 4468999999999999999974 799999999999874
No 116
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.07 E-value=2.8e-08 Score=101.74 Aligned_cols=190 Identities=16% Similarity=0.230 Sum_probs=138.1
Q ss_pred EEEeCCCCCCCCcCcccCc--cCCCc-CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 82 ILPINVGCLGACTYCKTKH--ARGHL-GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~--~rG~~-rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
-|.++.-|+++|.||--.. ...+. ...++|+|..-++.+++.|++.|.|+|+.... ..++.++++.+.+.
T Consensus 14 RiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~-- 86 (322)
T COG2896 14 RISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL-- 86 (322)
T ss_pred EEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc--
Confidence 4678999999999997644 11121 24579999999999999999999999953321 23578888887642
Q ss_pred CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 010162 159 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 237 (516)
Q Consensus 159 ~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~-i~t 237 (516)
+...+.++ +|-..+..... ++..+ ++++|++.+.|.+++.++.+.+.-..+++++-|+.+.++ |+. +..
T Consensus 87 --~~~~islT-TNG~~L~~~a~---~Lk~A--Gl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVKl 156 (322)
T COG2896 87 --GIRDLSLT-TNGVLLARRAA---DLKEA--GLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVKL 156 (322)
T ss_pred --ccceEEEe-cchhhHHHHHH---HHHHc--CCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceEE
Confidence 22345543 34333333332 23334 489999999999999999998777799999999999999 884 666
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHH
Q 010162 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 290 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~ 290 (516)
+..+ ++|-+.+++.+.++|++..++ .+.+--|.|.-....+.+. -++..+.
T Consensus 157 N~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i 208 (322)
T COG2896 157 NTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEI 208 (322)
T ss_pred EEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccchhhhccccHHHH
Confidence 6554 477899999999999999997 6788888887654445444 3554443
No 117
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=3e-08 Score=104.04 Aligned_cols=187 Identities=15% Similarity=0.272 Sum_probs=125.9
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh---C------C--CcEEEEeecCCCCCCCCcC--
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG-- 143 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~---~------G--vkeI~l~g~n~~~yg~d~~-- 143 (516)
...+..|.++.||+.+|.||..+. .|..|..++++|++++..+.+ . | +++|+|.|. |....
T Consensus 119 ~~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-----GEPLlN~ 192 (373)
T PRK14459 119 DRATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-----GEPLANY 192 (373)
T ss_pred CCceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-----CcchhhH
Confidence 356689999999999999999764 355688999999999987653 1 1 678999882 33221
Q ss_pred CCHHHHHHHHHHhCC-CCCC--ceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHH
Q 010162 144 VNLPILLNAIVAELP-PDGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLS 217 (516)
Q Consensus 144 ~~l~eLL~~I~~~i~-~~~~--~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e 217 (516)
..+.++++.+.+..+ +.+. ..+.+++. .+.+.+.++.+ .+ .-..+.+.+-|.+++..+++ ||.|+.+
T Consensus 193 d~V~~~i~~l~~~~~~g~gis~r~ITvST~---Gl~~~i~~la~---~~-l~~~LavSLha~d~e~R~~l~p~n~~~~l~ 265 (373)
T PRK14459 193 KRVVAAVRRITAPAPEGLGISARNVTVSTV---GLVPAIRKLAD---EG-LPVTLAVSLHAPDDELRDELVPVNTRWKVD 265 (373)
T ss_pred HHHHHHHHHHhCcccccCCccCCEEEEECc---CchhHHHHHHH---hc-CCeEEEEEeCCCCHHHHHHhcCcccCCCHH
Confidence 124444544432100 0111 25555543 22333333332 22 11259999999999998764 4789999
Q ss_pred HHHHHHHHHH-HhCCCCEE--EEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEEeeecCCCcc
Q 010162 218 DFRTVVDTLI-ELVPGMQI--ATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 279 (516)
Q Consensus 218 ~~~~~I~~lr-~~~pGi~i--~td~IvGfPGETeedf~etl~fi~el~--~d~v~if~~sp~pGTpa 279 (516)
+++++++... +. |..+ ..-+|=|+ .+++++.++..++++.++ .-++++-+|.|.+|.++
T Consensus 266 ~ll~a~~~~~~~~--grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y 329 (373)
T PRK14459 266 EVLDAARYYADAT--GRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW 329 (373)
T ss_pred HHHHHHHHHHHHh--CCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC
Confidence 9999977665 44 5544 44445454 799999999999999985 46899999999988753
No 118
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=6.8e-08 Score=100.79 Aligned_cols=184 Identities=16% Similarity=0.316 Sum_probs=122.4
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-C-----CcEEEEeecCCCCCCCCcCCCHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSSEDTGAYGRDIGVNLPILLN 151 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-G-----vkeI~l~g~n~~~yg~d~~~~l~eLL~ 151 (516)
....+|.++.||+.+|.||..+.. |..|..++++|++++..+... | +++|+|.|. |... .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~Gm-----GEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGM-----GEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEecc-----Cccc-cCHHHHHH
Confidence 566899999999999999987543 556888999999999876543 2 568889882 3322 12444554
Q ss_pred HHHHhCCCCC----CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHH
Q 010162 152 AIVAELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 224 (516)
Q Consensus 152 ~I~~~i~~~~----~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~ 224 (516)
.+.......+ ...+.+++.- +.+.+.++. ..+- -..+.+.+-+.+++..+++ ++.++.+++.+.++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvST~G---~~~~i~~L~---~~~l-~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLSTVG---IPKGIRRLA---EEDL-GVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHhcccccccccCceEEEECCC---ChHHHHHHH---HhCc-CcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 4432111111 1245554322 233333333 2221 1259999999999998876 47789999999997
Q ss_pred HHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 225 TLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 225 ~lr~~~p-Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
...+... .+.+..-+|=|+ .++++++.+..++++++. .++++-+|.|.++.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 6655422 234445555454 799999999999999985 57888899987763
No 119
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.04 E-value=5.4e-08 Score=100.63 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=123.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
+....++++.+|+.+|.||........ .+..+++++++.++ +.|+..|.|+|++...+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 345678999999999999986433221 13468888877655 36889999998766554 237788887753
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh-cCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~-MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
.+ ..+.+ .++-..+++.+.++ ...+ ...+.+.+.+.. +.-.. .+++.+.+.+.+.|+.++++ |+.
T Consensus 99 -~g----~~v~l-~TNG~ll~~~~~~l---~~~~--~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 -RK----KFVYL-CTNALLLEKKLDKF---EPSP--YLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred -cC----CeEEE-ecCceehHHHHHHH---HhCC--CcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 21 22333 25555555544333 3333 346888888764 44443 35567899999999999999 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|...++
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~ 207 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP 207 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccc
Confidence 7665543 468999999999999999999998888766654443
No 120
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.04 E-value=5.2e-08 Score=102.44 Aligned_cols=186 Identities=16% Similarity=0.339 Sum_probs=127.2
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC----------CCcEEEEeecCCCCCCCCcCCCH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD----------GVKEVWLSSEDTGAYGRDIGVNL 146 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~----------GvkeI~l~g~n~~~yg~d~~~~l 146 (516)
...+..|.++-||+.+|.||..+.. |..|..+.++|++++..+... ++++|+|.|. |... .++
T Consensus 101 ~~~t~CvSsQvGC~~~C~FC~t~~~-g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL-~N~ 173 (372)
T PRK11194 101 DRATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPL-LNL 173 (372)
T ss_pred CCeeEEEecCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----Cccc-cCH
Confidence 3566789999999999999998753 556788999999999765431 2788888883 3332 223
Q ss_pred ---HHHHHHHHHhCC-CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh-c--CCCCCHHHH
Q 010162 147 ---PILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-M--NREYTLSDF 219 (516)
Q Consensus 147 ---~eLL~~I~~~i~-~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~-M--nR~~t~e~~ 219 (516)
.+.++.+.+..+ .-....+.+++.- +.+.+.++.. .. --.+.+.+-+.+++..++ | ++.+..+++
T Consensus 174 d~v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~i~~l~~---~~--d~~LaiSLha~d~e~R~~lmPin~~~~l~~l 245 (372)
T PRK11194 174 NNVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPALDKLGD---MI--DVALAISLHAPNDELRDEIVPINKKYNIETF 245 (372)
T ss_pred HHHHHHHHHHhhhhccCcCCCeEEEECCC---CchHHHHHHh---cc--CeEEEeeccCCCHHHHHHhcCCcccccHHHH
Confidence 344554443211 0112356665432 2334444433 21 125677788889998875 4 467888888
Q ss_pred HHHHHHHHHhC----CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 220 RTVVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 220 ~~~I~~lr~~~----pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
.+++....+.. ..+.+..-+|=|+ .++++++++..+|++.++ .++++-+|.|.+|.++
T Consensus 246 l~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~-~~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 246 LAAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTP-CKINLIPWNPFPGAPY 307 (372)
T ss_pred HHHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEecCCCCCCCCC
Confidence 87766665542 2367888888887 899999999999999987 4899999999998654
No 121
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.03 E-value=4.5e-08 Score=102.24 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=122.3
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh---CCCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 151 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~ 151 (516)
...+..|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|.|. |.+.. ..+.++++
T Consensus 99 ~~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~ 172 (343)
T PRK14469 99 DRITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIK 172 (343)
T ss_pred CCeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHH
Confidence 356688999999999999998754 244577889999999975432 36788999883 33221 11344555
Q ss_pred HHHHhC-CCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCcc-EEEecccCCCHHHHHh---cCCCCCHHHHHHHHHHH
Q 010162 152 AIVAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDTL 226 (516)
Q Consensus 152 ~I~~~i-~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~-~i~iGlQSgsd~vLk~---MnR~~t~e~~~~~I~~l 226 (516)
.+.+.- ...+...+.+++. - +.+.+.+|. +.+ .+ .+.+.+.+.+++..+. ++|+++.+++.+.++.+
T Consensus 173 ~l~~~~~~~~g~~~itisTn-G--~~~~i~~L~---~~~--l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~ 244 (343)
T PRK14469 173 ILNHKKMKNIGIRRITISTV-G--IPEKIIQLA---EEG--LDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIY 244 (343)
T ss_pred HHhchhcccCCCCeEEEECC-C--ChHHHHHHH---hhC--CCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHH
Confidence 443210 0111235555432 1 234444343 332 44 6999999999998775 36889999999998876
Q ss_pred HHh-CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCC
Q 010162 227 IEL-VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 276 (516)
Q Consensus 227 r~~-~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pG 276 (516)
.+. ...+.+..-+|-| ..++++++++..++++.++ .++++-+|.|.++
T Consensus 245 ~~~~~~~v~i~yvlI~g-~NDs~ed~~~La~llk~~~-~~VnLIpynp~~~ 293 (343)
T PRK14469 245 QKKTGNRVTIEYILIKG-FNDEIEDAKKLAELLKGLK-VFVNLIPVNPTVP 293 (343)
T ss_pred HHHhCCeEEEEEEEECC-CCCCHHHHHHHHHHHhccC-cEEEEEecCCCCc
Confidence 654 1233444445545 4788999999999999886 4688889998766
No 122
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.02 E-value=5.9e-08 Score=101.39 Aligned_cols=187 Identities=16% Similarity=0.265 Sum_probs=125.9
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC------CCcEEEEeecCCCCCCCCcC--CCHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 149 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~n~~~yg~d~~--~~l~eL 149 (516)
+....|..+.||+.+|.||..+.. |..|..++++|++++..+... ....|+|.|. |.... ..+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~~-g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAKG-GFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCCC-CCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHH
Confidence 466799999999999999987643 556888999999999865442 1456777753 33221 123445
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHH
Q 010162 150 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 225 (516)
Q Consensus 150 L~~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~ 225 (516)
++.+.+.-+. -+...+.+++. .+.+.+.++. ... .-..+.+.+-+.+++..+++ ++.|..++++++++.
T Consensus 183 l~~l~~~~Gl~~~~r~itVsTs---G~~~~i~~L~---~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~ 255 (356)
T PRK14462 183 IKIFSENDGLAISPRRQTISTS---GLASKIKKLG---EMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRK 255 (356)
T ss_pred HHHhcCccCCCcCCCceEEECC---CChHHHHHHH---hcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 5544321110 01124555543 2224444433 222 11457788999999998864 578888999998874
Q ss_pred HH-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 226 LI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 226 lr-~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
.. +....+.+..-+|=|+ .+++++.+++.+|++.++ .++++-+|.|.++.++
T Consensus 256 y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 44 5422356666777776 899999999999999986 5899999999888754
No 123
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.00 E-value=7.6e-08 Score=100.90 Aligned_cols=187 Identities=16% Similarity=0.279 Sum_probs=123.4
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh------CCCcEEEEeecCCCCCCCCcC--CCHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIG--VNLPI 148 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~------~GvkeI~l~g~n~~~yg~d~~--~~l~e 148 (516)
...+..|..+.||+.+|+||..+.. |..|..++++|++++..+.. .+++.|+|.|. |.... ..+.+
T Consensus 103 ~~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~ 176 (355)
T TIGR00048 103 DRATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVK 176 (355)
T ss_pred CCcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHH
Confidence 3566899999999999999998653 45578899999999876532 25778999883 33221 11334
Q ss_pred HHHHHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCcc-EEEecccCCCHHHHHhc---CCCCCHHHHHHHH
Q 010162 149 LLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSAM---NREYTLSDFRTVV 223 (516)
Q Consensus 149 LL~~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~-~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I 223 (516)
+++.+.+..+. -+...+.+++. .+.+.+.++. ..+ .. .+.+.+-+.+++..+++ +|.++.+++.+.+
T Consensus 177 ~l~~l~~~~g~~i~~~~itisT~---G~~~~i~~l~---~~~--l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l 248 (355)
T TIGR00048 177 AMEIMNDDFGLGISKRRITISTS---GVVPKIDILA---DKM--LQVALAISLHAPNDELRSSLMPINKKYNIETLLAAV 248 (355)
T ss_pred HHHHhhcccccCcCCCeEEEECC---CchHHHHHHH---HhC--CCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 44444321110 01134555432 1223443333 222 22 57899999999998875 6788999999888
Q ss_pred HHH-HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 224 DTL-IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 224 ~~l-r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
+.. ++.-..+.+..-+|=|+ .++++++.+..++++.++ -++++-+|.|.++.++
T Consensus 249 ~~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 249 RRYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTK-CKVNLIPWNPFPEADY 303 (355)
T ss_pred HHHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCC-CceEEEecccCCCCCC
Confidence 755 44411234555555555 688899999999999987 4788999999887654
No 124
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=5.6e-08 Score=100.95 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=126.4
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH--
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA-- 155 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~-- 155 (516)
.+.+|.++-||+.+|.||..... |..|..+.++|++++..+.+. .+++|+|.|. |.+. .++.++++.+..
T Consensus 96 ~t~CvSsQvGC~~~C~FC~tg~~-g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----GEPl-~N~d~vl~ai~~l~ 168 (344)
T PRK14464 96 DGLCVSTQVGCAVGCVFCMTGRS-GLLRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----GEPA-HNLDNVLEAIDLLG 168 (344)
T ss_pred CcEEEEccCCcCCCCCcCcCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----Cccc-CCHHHHHHHHHHhh
Confidence 46899999999999999987543 556788999999999987764 6899999983 3322 234555554321
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHHHHhCCC
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~~~pG 232 (516)
....-+...+.++++-. .+...++.. . .+-..+.+.+.+.+++..+.+ ++.|+.+++.++++...+.. |
T Consensus 169 ~~~~i~~r~itiST~G~---~~~i~rL~~---~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-g 240 (344)
T PRK14464 169 TEGGIGHKNLVFSTVGD---PRVFERLPQ---Q-RVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-G 240 (344)
T ss_pred chhcCCCceEEEecccC---chHHHHHHH---h-cCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-C
Confidence 11111234555554321 222222332 1 112345678889999998765 46889999999988887653 5
Q ss_pred CEEE-EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 233 MQIA-TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 233 i~i~-td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
..+. -++++.--++++++..+..++++.+. -++++-+|.|.+|+++.
T Consensus 241 rri~~EyvLl~GVNDs~e~a~~L~~~l~~~~-~~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 241 YPIQYQWTLLEGVNDSDEEMDGIVRLLKGKY-AVMNLIPYNSVDGDAYR 288 (344)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhccc-cccceecCCccCCCCcc
Confidence 4333 34455444899999999999998775 46899999999998544
No 125
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.93 E-value=2e-07 Score=97.23 Aligned_cols=187 Identities=14% Similarity=0.251 Sum_probs=120.9
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLN 151 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~--~~l~eLL~ 151 (516)
.+.+++|.++-||+.+|.||..+. -|..|..++++|++++...... ....+++.|. |.... ..+.++++
T Consensus 99 ~~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~ 172 (342)
T PRK14454 99 HGNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLK 172 (342)
T ss_pred CCCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHH
Confidence 356789999999999999998753 3556789999999999876542 3455565542 33221 12445555
Q ss_pred HHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHH-H
Q 010162 152 AIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT-L 226 (516)
Q Consensus 152 ~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~-l 226 (516)
.+.+..+. -+...+.+++. .+.+.+.++.+ ..- -..+.+.+=+.+++..+.+ ++.+..+++.++++. +
T Consensus 173 ~l~~~~gi~~~~r~itvsTs---G~~p~i~~l~~---~~~-~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~ 245 (342)
T PRK14454 173 IVNSPYGLNIGQRHITLSTC---GIVPKIYELAD---ENL-QITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYI 245 (342)
T ss_pred HHhcccccCcCCCceEEECc---CChhHHHHHHh---hcc-cceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 55421110 01124566542 12223333332 211 1247899999999998764 366788888777765 4
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
.+.-..+.+..-+|=|+ .++++++++..++++.+. .++++-+|.|.++..
T Consensus 246 ~~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 246 NKTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred HHhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 44412345566666666 799999999999999874 589999999987763
No 126
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.93 E-value=3.3e-07 Score=95.34 Aligned_cols=190 Identities=13% Similarity=0.209 Sum_probs=127.8
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
..+..|.++-||+.+|+||.... .|-.|..+..+|++++-.+.+ ..+.+|+|.| +|.+. .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH
Confidence 45689999999999999999865 455688899999999977654 3578899988 34442 23444444432
Q ss_pred HhCCCC-----CCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHHHHHHH
Q 010162 155 AELPPD-----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 226 (516)
Q Consensus 155 ~~i~~~-----~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~~I~~l 226 (516)
.+... +...+++++. .+.+.+.++.. ... -..+.+.+-+.+++....+ ++.|..+++.+++..+
T Consensus 177 -~l~~~~~~~~~~r~itvST~---G~~~~i~~l~~--~~~--~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 177 -ILHDPDAFNLGAKRITISTS---GVVNGIRRFIE--NKE--PYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred -HHhChhhhcCCCCeEEEeCC---CchHHHHHHHh--hcc--CceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 12111 1235665532 22344444432 111 1378899999999998865 7889999999999976
Q ss_pred HHhCCCCE--EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 227 IELVPGMQ--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 227 r~~~pGi~--i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
.+.. +-. +..-+|=|+ .+++|+.++..++++.++ .++++-+|.|. + ..++..+++.
T Consensus 249 ~~~~-~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~~-~---~~~~~ps~e~ 306 (342)
T PRK14465 249 TREL-KRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNTE-F---FGWRRPTDDE 306 (342)
T ss_pred HHHc-CCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCCC-C---CCCCCCCHHH
Confidence 6432 333 334444454 688999999999999987 67899999982 3 3444454443
No 127
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.92 E-value=1.4e-07 Score=95.27 Aligned_cols=190 Identities=17% Similarity=0.254 Sum_probs=130.2
Q ss_pred EEeCCCCCC----CCcCcccCccCCCcCCCCHHHHHHHHHHHHhC---CCcE--E-EEeecCCCCCCCCcC-CCHHHHHH
Q 010162 83 LPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKE--V-WLSSEDTGAYGRDIG-VNLPILLN 151 (516)
Q Consensus 83 V~isrGC~~----~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~---Gvke--I-~l~g~n~~~yg~d~~-~~l~eLL~ 151 (516)
|--++||.+ +|.+|.++.-. .....+.|++++++.....+ ...+ | +|+++.|..- .+.+ .....+++
T Consensus 51 ILrT~GC~w~~~~gC~MCgY~~d~-~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~-~EVP~e~R~~Il~ 128 (358)
T COG1244 51 ILRTRGCRWYREGGCYMCGYPADS-AGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDP-EEVPREARRYILE 128 (358)
T ss_pred EEecCCcceeccCCcceecccccc-CCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCCh-hhCCHHHHHHHHH
Confidence 344699983 59999987652 24567899999999988764 1223 2 3455433321 1111 11234455
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHH-HHHHHHHcCCCCccEEEecccCCCHHHH-HhcCCCCCHHHHHHHHHHHHHh
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l-~eL~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~t~e~~~~~I~~lr~~ 229 (516)
.|.+ . +....+-+ ..+|+.++++. .++.+++... -..+.||+||.||++. ..||||.|.++|.++++.+|++
T Consensus 129 ~is~-~--~~v~~vvv-ESRpE~I~eE~l~e~~~il~gk--~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~ 202 (358)
T COG1244 129 RISE-N--DNVKEVVV-ESRPEFIREERLEEITEILEGK--IVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNY 202 (358)
T ss_pred HHhh-c--cceeEEEe-ecCchhcCHHHHHHHHHhhCCc--eEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHc
Confidence 5542 1 12244444 37888886654 4455554332 4589999999999998 5799999999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHH----HHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 230 VPGMQIATDIICGFPGETDE----DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 230 ~pGi~i~td~IvGfPGETee----df~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
|+.+.+++++-.|.=|+. |...+++ ..+-..+.+.+.+-+...||-...++
T Consensus 203 --g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw 257 (358)
T COG1244 203 --GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLW 257 (358)
T ss_pred --CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHHH
Confidence 999999999999987763 4444444 33335689999999999999776654
No 128
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.91 E-value=1.6e-07 Score=97.23 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=119.5
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCcC-CCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~r-sr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
.+.+.++.||+.+|.||...... ..+ ..+.+++.+-+..+.+ .|+++|+|+|+|-..... ..+.++++.+.. +
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~-i 171 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFP-YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQ-I 171 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHh-C
Confidence 35677999999999999865432 122 2233443333444544 489999999987665422 137788877753 4
Q ss_pred CCCCCceEEEee----cCCcchHHHHHHHHHHHcCCCCccEE-EecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 158 PPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 158 ~~~~~~~iri~~----~~P~~i~~~l~eL~~l~~~~~~~~~i-~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+ ....+|+.+ ..|..+++++.++. ...+ ...+ .+.+.+.. ++ .+++.++++.++++ |
T Consensus 172 ~--~~~~iri~tr~~~~~p~rit~el~~~L--~~~~--~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~--G 233 (321)
T TIGR03821 172 P--HLKRLRIHTRLPVVIPDRITSGLCDLL--ANSR--LQTVLVVHINHAN-EI---------DAEVADALAKLRNA--G 233 (321)
T ss_pred C--CCcEEEEecCcceeeHHHhhHHHHHHH--HhcC--CcEEEEeeCCChH-hC---------cHHHHHHHHHHHHc--C
Confidence 3 235677774 45555666653322 2332 2233 34565542 32 15688899999999 9
Q ss_pred CEEEEEE--EEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHH
Q 010162 233 MQIATDI--ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291 (516)
Q Consensus 233 i~i~td~--IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~ 291 (516)
+.+.... +=|+ .++.+++.+..+.+.++++...++|.+.|-.|+.-+ .++.+...
T Consensus 234 i~v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f---~v~~~~~~ 290 (321)
T TIGR03821 234 ITLLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF---DVDDERAR 290 (321)
T ss_pred CEEEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc---cCCHHHHH
Confidence 8664433 3343 588999999999999999999999999998887632 45654433
No 129
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.83 E-value=5.6e-07 Score=92.81 Aligned_cols=189 Identities=17% Similarity=0.303 Sum_probs=129.3
Q ss_pred CCceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-C------CcEEEEeecCCCCCCCCcCCCHHH
Q 010162 76 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPI 148 (516)
Q Consensus 76 ~~~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-G------vkeI~l~g~n~~~yg~d~~~~l~e 148 (516)
..+....|.++-||+-+|+||..... |..|-.+..+|++++..+.+. | +..|+|.|- |.+. .++..
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~-G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl-~N~dn 170 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQG-GLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPL-LNLDN 170 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccc-cceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----Cchh-hhHHH
Confidence 45667889999999999999998643 667889999999999987742 2 556888873 3332 23444
Q ss_pred HHHHHHHhCC--CCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh---cCCCCCHHHHHHHH
Q 010162 149 LLNAIVAELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVV 223 (516)
Q Consensus 149 LL~~I~~~i~--~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~---MnR~~t~e~~~~~I 223 (516)
++..+.-... +.+... |..++.+..+.+.+.+++. .. +-..+.+.+.+.+++..+. +||.|+.++..+++
T Consensus 171 V~~a~~i~~~~~G~~ls~-R~iTvSTsGi~~~I~~l~~--~~--~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~ 245 (349)
T COG0820 171 VVKALEIINDDEGLGLSK-RRITVSTSGIVPRIRKLAD--EQ--LGVALAISLHAPNDELRDQLMPINKKYPIEELLEAI 245 (349)
T ss_pred HHHHHHhhcCcccccccc-eEEEEecCCCchhHHHHHh--hc--CCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHH
Confidence 5444432111 111111 2223334456666666653 11 2346899999999998764 48999999999888
Q ss_pred HHHHHhCCCCEEE-EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 224 DTLIELVPGMQIA-TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 224 ~~lr~~~pGi~i~-td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
+...+.-. -.|+ -+.++.--.+..++..+.+++++.++- ++++-+|.|.||+.
T Consensus 246 r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~ 299 (349)
T COG0820 246 RYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD 299 (349)
T ss_pred HhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC
Confidence 88876533 3333 344444446778888888888888864 89999999999998
No 130
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.79 E-value=8.9e-07 Score=94.09 Aligned_cols=182 Identities=17% Similarity=0.251 Sum_probs=128.9
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.-.+.+.++.+|+.+|.||.-....|. ....+.+++.+.++.+.+. ++++|.|+|+|-.....+ .+..+++.+.+
T Consensus 107 p~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~---~L~~iL~~L~~ 183 (417)
T TIGR03820 107 PDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDD---YLDWILTELRA 183 (417)
T ss_pred CCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChH---HHHHHHHHHhh
Confidence 346788999999999999986543333 3456788888888888875 999999999887765432 25566677753
Q ss_pred hCCCCCCceEEEeec----CCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 156 ELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 156 ~i~~~~~~~iri~~~----~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
++ ....+|+++- .|..+++++.++. .+.+ ..++.+.+.| ++- ..++..+++++++++
T Consensus 184 -Ip--hV~~IRI~TR~pvv~P~RIT~ell~~L--k~~~--~~~v~~h~nh--p~E--------it~~a~~Al~~L~~a-- 244 (417)
T TIGR03820 184 -IP--HVEVIRIGTRVPVVLPQRITDELVAIL--KKHH--PVWLNTHFNH--PRE--------ITASSKKALAKLADA-- 244 (417)
T ss_pred -cC--CCceEEEeeccccccccccCHHHHHHH--HhcC--CeEEEEeCCC--hHh--------ChHHHHHHHHHHHHc--
Confidence 43 3456888753 2666676664322 2322 2344444444 331 258899999999999
Q ss_pred CCEE--EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC
Q 010162 232 GMQI--ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 232 Gi~i--~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
|+.+ .+-++=| -+++.+.+.+..+-+.++++.--++|..-+-+||.-|+.
T Consensus 245 GI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv 296 (417)
T TIGR03820 245 GIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRT 296 (417)
T ss_pred CCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccC
Confidence 9865 3555666 589999999999999999988778888888888866533
No 131
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.78 E-value=7.5e-07 Score=90.26 Aligned_cols=176 Identities=18% Similarity=0.271 Sum_probs=123.4
Q ss_pred CCCCCCcCcccCccC----CCcCCCCHHHHHHHHHHHHhC------CCcEEEEeecCCCCCCCC-cCCCHHHHHHHHHHh
Q 010162 88 GCLGACTYCKTKHAR----GHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAE 156 (516)
Q Consensus 88 GC~~~CsFC~ip~~r----G~~rsr~~e~Iv~EI~~L~~~------GvkeI~l~g~n~~~yg~d-~~~~l~eLL~~I~~~ 156 (516)
=|.++|.||...... ++....+.++|.++++.+... ..+.+.|++. |.. ...+|.++++.+.+
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~- 106 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKK- 106 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHh-
Confidence 499999999873321 233455789999999998876 4566777653 222 12458889988864
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCC---CHHHHHHHHHHHHHh-CCC
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 232 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~---t~e~~~~~I~~lr~~-~pG 232 (516)
.+. . -.+-.+|... .+-+.+|. ..+.+.+.+.+.+.+.++++||++ .++.+.+.++.+++. ...
T Consensus 107 ~g~---~-~tflvTNgsl-pdv~~~L~-------~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 107 RGK---K-TTFLVTNGSL-PDVLEELK-------LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred cCC---c-eEEEEeCCCh-HHHHHHhc-------cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 321 1 1222233222 22232222 257899999999999999999996 678888888888885 334
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
..+.+.++=|+ ..+++++++..+++++..++.+.+..|+ +||..-+.++
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~l~ 223 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYRLP 223 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhccC
Confidence 56788888888 6778889999999999999999999887 4555555443
No 132
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.77 E-value=5.7e-07 Score=93.15 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=114.4
Q ss_pred eCCCCCCCCcCcccCccCC----C--cCCCCHHHHHHHHHHHHh---CC-----------------CcEEEEee-cCCCC
Q 010162 85 INVGCLGACTYCKTKHARG----H--LGSYTVESLVGRVRTVIA---DG-----------------VKEVWLSS-EDTGA 137 (516)
Q Consensus 85 isrGC~~~CsFC~ip~~rG----~--~rsr~~e~Iv~EI~~L~~---~G-----------------vkeI~l~g-~n~~~ 137 (516)
+..||+.+|.||..+.... . .+..++++|++++..... .| .+.+.|++ +..+.
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL 143 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL 143 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc
Confidence 4678999999998775432 1 235579999999977533 12 23455553 12222
Q ss_pred CCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC---C
Q 010162 138 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 214 (516)
Q Consensus 138 yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~---~ 214 (516)
| ..+.++++.+.+ . + ..+.+. ++-. +.+.+.+| ..+ ...+.+.+.+.+++..+++.|+ .
T Consensus 144 ~-----p~l~eli~~~k~-~---G-i~~~L~-TNG~-~~e~l~~L----~~~--~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 144 Y-----PYLPELIEEFHK-R---G-FTTFLV-TNGT-RPDVLEKL----EEE--PTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred h-----hhHHHHHHHHHH-c---C-CCEEEE-CCCC-CHHHHHHH----Hhc--CCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 2 247788877754 2 2 233333 3332 23333333 122 5789999999999999999875 5
Q ss_pred CHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 215 TLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi--~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
+.+.+.+.++.+++. +. .+.+.++ ||.+..+..+.++++++++++.+.+.+|.+.....
T Consensus 206 ~~~~vl~~L~~l~~~--~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 206 AWERILETLELLPSK--KTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR 266 (322)
T ss_pred cHHHHHHHHHHHHhC--CCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc
Confidence 889999999999998 55 4555554 55566666689999999999999999999876553
No 133
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.77 E-value=1.3e-07 Score=93.33 Aligned_cols=180 Identities=20% Similarity=0.314 Sum_probs=121.0
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
++-.++-|.++|.||++...|.+ .-...|++..+.| ..=|+..|+|++.|-.........++++.++.|...-+
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAI---asWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p- 189 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAI---ASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAP- 189 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHH---HHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCc-
Confidence 33458889999999999888743 3344456555444 34599999999754333211112358888888865432
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 010162 160 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~ 239 (516)
.+-+..+.|++- ..++-+..++.++ ..-+.-.+|+...-.---=.|..+..+-+.+++.+++..|++...+.+
T Consensus 190 ----~ilvE~L~pDF~-Gd~~~Ve~va~SG--LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsi 262 (360)
T KOG2672|consen 190 ----EILVECLTPDFR-GDLKAVEKVAKSG--LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSI 262 (360)
T ss_pred ----ccchhhcCcccc-CchHHHHHHHhcC--ccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhh
Confidence 344555666543 3333344444444 344444444432111111135568889999999999999998888999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 010162 240 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273 (516)
Q Consensus 240 IvGfPGETeedf~etl~fi~el~~d~v~if~~sp 273 (516)
|.|+ |||+|++.+|++.+++...|-+.+.+|.+
T Consensus 263 Mlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 263 MLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred hhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 9998 99999999999999999999888888774
No 134
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.75 E-value=2.9e-07 Score=92.91 Aligned_cols=196 Identities=17% Similarity=0.312 Sum_probs=131.5
Q ss_pred CCceEEEEEeC--CCCCCCCcCcccCccC--C---------CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc
Q 010162 76 RNKFVEILPIN--VGCLGACTYCKTKHAR--G---------HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 142 (516)
Q Consensus 76 ~~~~~a~V~is--rGC~~~CsFC~ip~~r--G---------~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~ 142 (516)
++...+|+.+. .||-..|+||...... + .+....++++++-+..-.. .++.+.+.-.+.+.+..|
T Consensus 26 ~~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i~~p~~~~d- 103 (339)
T COG2516 26 TRPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQIAYPRALND- 103 (339)
T ss_pred cccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceeeccccccch-
Confidence 34566788887 9999999999754311 1 1112234555544433111 245555443233333222
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC----CCCHH
Q 010162 143 GVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLS 217 (516)
Q Consensus 143 ~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR----~~t~e 217 (516)
+..+++++.-... ..+.++ .+.+....+++.+ ..+.+ ..++.++++..+.++++.+.| +|+.+
T Consensus 104 ---~~~i~~~~~~~~~----~~itiseci~~~~~~~~l~e---~~klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~e 171 (339)
T COG2516 104 ---LKLILERLHIRLG----DPITISECITAVSLKEELEE---YRKLG--ADYLGVAEDAANEELFEKVRKTSGSPHSWE 171 (339)
T ss_pred ---hhhhhhhhhhccC----CceehhhhhhcccchHHHHH---HHhcc--hhhhhHHHHhcCHHHHHHHHhccCCCCcHH
Confidence 4555555542222 123333 1223222344433 33333 678999999999999998743 47899
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCH
Q 010162 218 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 287 (516)
Q Consensus 218 ~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~ 287 (516)
.+.+.++++.++++.-.+.+++|+|+ |||++++.+++..+...+ -.+++|.|.|..||.+.+...+|-
T Consensus 172 ~~~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g-~~v~Lfaf~P~~gt~me~r~~~pv 239 (339)
T COG2516 172 RYWEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRG-GIVSLFAFTPLKGTQMENRKPPPV 239 (339)
T ss_pred HHHHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcC-ceEEEEEecccccccccCCCCCcH
Confidence 99999999999998779999999995 999999999999999988 579999999999999998876663
No 135
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=98.58 E-value=3.7e-07 Score=71.25 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=46.2
Q ss_pred hcCCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 308 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 308 ~~~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
++++|++++|+||+.+.++ .++||+.+|..|+|++....+|++++|+|+++..++++|+++
T Consensus 1 ~~~~G~~~~VlVe~~~~~g-~~~gr~~~~~~V~v~~~~~~iG~~v~v~I~~~~~~~l~G~~v 61 (61)
T PF01938_consen 1 QSYVGKTLEVLVEELGDEG-QGIGRTDNGKVVFVPGGLPLIGEFVKVRITKAKKNYLFGELV 61 (61)
T ss_dssp ---TTEEEEEEEEEE-TTS-EEEEEET-TEEEEETT--T--TEEEEEEEEEE-SSEEEEEEE
T ss_pred CccCCcEEEEEEEEecCCC-EEEEEeCCCeEEEECCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 3689999999999987444 689999999999998654347999999999999999999986
No 136
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.50 E-value=4.4e-07 Score=88.50 Aligned_cols=187 Identities=19% Similarity=0.302 Sum_probs=120.1
Q ss_pred CCCCCCCCcCcccCccC--CC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 010162 86 NVGCLGACTYCKTKHAR--GH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 161 (516)
Q Consensus 86 srGC~~~CsFC~ip~~r--G~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~ 161 (516)
+-||...|.||.-...+ |- .+...+|+|+++.+...+.|-.++.+...=-...|+ ...|..+++.|.+ +..-+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GR--k~~fk~IlE~ike-vr~Mg 167 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGR--KSAFKRILEMIKE-VRDMG 167 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccc--hhHHHHHHHHHHH-HHcCC
Confidence 57999999999865433 42 366789999999999999998888765421111122 2346666665543 32211
Q ss_pred -CceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 162 -STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 162 -~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
...+.+++++... -++|. +++ .....-.+.+ |.+....+--..+.++-++.|+.+|++ ||.+.+.=|
T Consensus 168 mEvCvTLGMv~~qQ----AkeLK---dAG--LTAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGI 235 (380)
T KOG2900|consen 168 MEVCVTLGMVDQQQ----AKELK---DAG--LTAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGI 235 (380)
T ss_pred ceeeeeeccccHHH----HHHHH---hcc--ceecccCccc-hhhhhcccceecchHHHHHHHHHHHHh--cceeccccc
Confidence 2345566554321 12222 222 2233333333 222222222233668899999999999 999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhc--CCCeEEEEEeeecCCCccccCC--CCCHH
Q 010162 241 CGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK--KVPSA 288 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el--~~d~v~if~~sp~pGTpa~~~~--~v~~~ 288 (516)
+|+ ||.++|..-.+-.+..+ .+..+-+..+.+.+|||+.+-. +++-+
T Consensus 236 lGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~ 286 (380)
T KOG2900|consen 236 LGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQID 286 (380)
T ss_pred ccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHH
Confidence 999 99999977666666655 4567889999999999998743 45433
No 137
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.44 E-value=6.5e-06 Score=82.33 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=124.1
Q ss_pred CCCCCCCCcCcccCccCCCc-CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCce
Q 010162 86 NVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 164 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~ 164 (516)
+.-|-+.|.||+........ ...++++|++-.-.+++..+-|=.|.+..+.-.+...-..+.+.++.+. +.......
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LR--le~~f~GY 138 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILR--LEHKFRGY 138 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccCcchHHHHHHHHHHHHh--hccccCcE
Confidence 56699999999986554444 4668999998887777765544334432232221111112333333332 21111223
Q ss_pred EEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-------------C
Q 010162 165 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-------------P 231 (516)
Q Consensus 165 iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~-------------p 231 (516)
|++- +-|..-.+.+.++ +-.+.++++.+|-..++-|+.+--..+.-++.+.+.++|..+ |
T Consensus 139 IHlK-~IPgas~~li~ea------glyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp 211 (404)
T COG4277 139 IHLK-IIPGASPDLIKEA------GLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTP 211 (404)
T ss_pred EEEE-ecCCCCHHHHHHH------hhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCc
Confidence 4443 2233322333222 224789999999999999999876666678888887777621 3
Q ss_pred CCE---EEEEEEEcCCCCCHHHHHHHHHHH-HhcCCCeEEEEEeeecCCCccccCCCCC
Q 010162 232 GMQ---IATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGTPAARMKKVP 286 (516)
Q Consensus 232 Gi~---i~td~IvGfPGETeedf~etl~fi-~el~~d~v~if~~sp~pGTpa~~~~~v~ 286 (516)
.+. -+|.+|||-.|||++++...-+.+ ....+.++.++.|+|.|+||......+|
T Consensus 212 ~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pp 270 (404)
T COG4277 212 EFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPP 270 (404)
T ss_pred cccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccCCc
Confidence 332 478999999999999998877776 5668999999999999999987643444
No 138
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.40 E-value=3.6e-05 Score=82.02 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=109.3
Q ss_pred CCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC---CCcEEEEeec-CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE
Q 010162 91 GACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 166 (516)
Q Consensus 91 ~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~-n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~ir 166 (516)
..|.||......-.-+..++++|+++++..... ....+.|+|+ +...| ..+.++++.+.+ .+ ..+.
T Consensus 37 ~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~-~g----i~ta 106 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSD-LG----LPIH 106 (404)
T ss_pred CCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHh-CC----CCEE
Confidence 377788544322223567899999999986652 3466888876 33333 237888888764 22 2344
Q ss_pred EeecCCc-chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 010162 167 IGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 245 (516)
Q Consensus 167 i~~~~P~-~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG 245 (516)
+.+++.. ..+++. +..+...+ +..+.+.+.|.|+++.++|-..-..+.+++.++.+.+. ..+.+..-+| ||
T Consensus 107 I~~TnG~~l~~~e~--~~~L~~~g--ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlI---PG 178 (404)
T TIGR03278 107 LGYTSGKGFDDPEI--AEFLIDNG--VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVII---PG 178 (404)
T ss_pred EeCCCCcccCCHHH--HHHHHHcC--CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEe---CC
Confidence 4434432 223322 23333333 67899999999999999865444558899999999885 2334444444 56
Q ss_pred CCH-HHHHHHHHHHHhcCCCeEEEEEeeec
Q 010162 246 ETD-EDFNQTVNLIKEYKFPQVHISQFYPR 274 (516)
Q Consensus 246 ETe-edf~etl~fi~el~~d~v~if~~sp~ 274 (516)
-++ +++.++++++.++++..+++.+|.+.
T Consensus 179 iND~eel~~ti~~L~~lg~~~V~L~~y~~~ 208 (404)
T TIGR03278 179 VNDGDVLWKTCADLESWGAKALILMRFANT 208 (404)
T ss_pred ccCcHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 565 55579999999999999999998864
No 139
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.39 E-value=0.00014 Score=75.02 Aligned_cols=180 Identities=11% Similarity=0.171 Sum_probs=125.7
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCC-CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~G-vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
.....+.++.-|+.+|.||............+.++..+.+..+.+.| ..-+.|+|++.... .++.++++...+.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~~ 92 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARKK 92 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhhc
Confidence 45567789999999999998766543224556777777777888888 77788887655543 2367777766532
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHH-HHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~v-Lk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
. .....+. ++...++++. +..+...+ +.++.+.+++.+++. ....++....+...+.++.+++. |+.+
T Consensus 93 -~---~~~~~~~-TnG~~~~~~~--~~~l~~~g--~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~~ 161 (347)
T COG0535 93 -G---GIRVSLS-TNGTLLTEEV--LEKLKEAG--LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GILV 161 (347)
T ss_pred -C---CeEEEEe-CCCccCCHHH--HHHHHhcC--CcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCee
Confidence 1 1222222 3332233333 22333333 789999999999998 45555677889999999999988 8763
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 275 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p 275 (516)
...+. .+..+.+++.+..+++.+++++...++.+.|..
T Consensus 162 ~~~~~--v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 162 VINTT--VTKINYDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred eEEEE--EecCcHHHHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 33333 457899999999999999999888888888754
No 140
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.38 E-value=4.9e-05 Score=81.45 Aligned_cols=181 Identities=11% Similarity=0.103 Sum_probs=115.7
Q ss_pred ceEEEEE-eCCCCCCCCcCcccCccCC-----CcCCCCHHHHHHHHHHHHhC-CCcE--EEEeecCCCCCCCCcCCCHHH
Q 010162 78 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 148 (516)
Q Consensus 78 ~~~a~V~-isrGC~~~CsFC~ip~~rG-----~~rsr~~e~Iv~EI~~L~~~-Gvke--I~l~g~n~~~yg~d~~~~l~e 148 (516)
++...++ ++..|+.+|.||....... .....+.+.+.+-|+.+.+. +... |.|.|+..+..+... +.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~---~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSF---YKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHH---HHH
Confidence 3555677 4579999999999743211 11346777777777777654 5444 555676555443211 233
Q ss_pred HHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC----CCCHHHHHHHH
Q 010162 149 LLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVV 223 (516)
Q Consensus 149 LL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR----~~t~e~~~~~I 223 (516)
+++-+.+.... ..+++. .+|...+++++.+. +.+.+ + .|.+.+.+. +++-...++ ..+.+.+.+.+
T Consensus 89 ~~~~~~~~~~~---~~i~~~i~TNG~ll~~e~~~~--l~~~~--~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i 159 (412)
T PRK13745 89 ALELQKKYARG---RQIDNCIQTNGTLLTDEWCEF--FRENN--F-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI 159 (412)
T ss_pred HHHHHHHHcCC---CceEEEEeecCEeCCHHHHHH--HHHcC--e-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH
Confidence 33322221211 233443 25666777766432 23333 3 789999875 555554442 24889999999
Q ss_pred HHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec
Q 010162 224 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274 (516)
Q Consensus 224 ~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~ 274 (516)
+.++++ |+.+.+...+. .++.+...+.++++.+++++.+++.++.|.
T Consensus 160 ~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 160 NLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 999998 88776655554 567788899999999999999999888874
No 141
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.35 E-value=0.0001 Score=77.63 Aligned_cols=175 Identities=14% Similarity=0.207 Sum_probs=107.0
Q ss_pred EEEE-eCCCCCCCCcCcccCccCC-C----cCCCCHHHHHHHHHHHHhC--CCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 010162 81 EILP-INVGCLGACTYCKTKHARG-H----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNA 152 (516)
Q Consensus 81 a~V~-isrGC~~~CsFC~ip~~rG-~----~rsr~~e~Iv~EI~~L~~~--GvkeI~l~g~n~~~yg~d~~~~l~eLL~~ 152 (516)
.++. ++.+||.+|.||..+.... . ....+.+.+.+-++.+.+. +...|.|+|+..+....+. +.++++.
T Consensus 6 ~~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~---~~~~~~~ 82 (370)
T PRK13758 6 LLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEF---FEELMEL 82 (370)
T ss_pred EEEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChHH---HHHHHHH
Confidence 3444 4589999999998764221 1 1134555555555555443 4557888886555432111 3455554
Q ss_pred HHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC----CCCHHHHHHHHHHHH
Q 010162 153 IVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLI 227 (516)
Q Consensus 153 I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR----~~t~e~~~~~I~~lr 227 (516)
+.+ .+.. ...+.++ .++-..++++..+. +.+.+ . .+.+.+.+. +++-..+++ +.+.+.+.+.++.++
T Consensus 83 ~~~-~~~~-~~~~~~~i~TNG~ll~~~~~~~--l~~~~--~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~ 154 (370)
T PRK13758 83 QRK-HNYK-NLKIYNSLQTNGTLIDESWAKF--LSENK--F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFK 154 (370)
T ss_pred HHH-hccC-CCeEEEEEEecCEecCHHHHHH--HHHcC--c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHH
Confidence 432 2211 1122222 25555566655332 22332 3 788999886 566555553 458899999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 228 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 228 ~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
+. ++.+...+.+. ..+.+++.+.++++.+++++.+.+.+
T Consensus 155 ~~--~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 155 KY--KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred Hh--CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 98 77766666665 35778899999999999998876654
No 142
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.26 E-value=7e-05 Score=76.74 Aligned_cols=186 Identities=19% Similarity=0.194 Sum_probs=120.3
Q ss_pred EEEeCCCCCCCCcCcccCccCCCc-CC----CCHHHHHHHHHHHHh-CCCc-EEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 010162 82 ILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVNLPILLNAIV 154 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~-rs----r~~e~Iv~EI~~L~~-~Gvk-eI~l~g~n~~~yg~d~~~~l~eLL~~I~ 154 (516)
.+..-+||.+.|.||......+.. .+ ...+++++.++.-.. .+.+ ..+.+|.++-.|..... -..+.+.+.
T Consensus 32 ~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~--~~~ltR~il 109 (297)
T COG1533 32 TLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEK--EYRLTRKIL 109 (297)
T ss_pred ecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchH--HHHHHHHHH
Confidence 567789999999999987665543 22 223447777766544 3333 34555666767765321 122333333
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCC
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pGi 233 (516)
+.+. .....+.|.+=.+ .+..+++-|..+.... ...+.+.+-+.++++.+.+--+ -+.++-.++++.+.++ |+
T Consensus 110 ei~~-~~~~~v~I~TKS~-lv~RDld~l~~~~~~~--~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--Gi 183 (297)
T COG1533 110 EILL-KYGFPVSIVTKSA-LVLRDLDLLLELAERG--KVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--GI 183 (297)
T ss_pred HHHH-HcCCcEEEEECCc-chhhhHHHHHhhhhcc--ceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--CC
Confidence 2211 1124455553222 2333444344444333 3468888888888888888644 4889999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecC
Q 010162 234 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 275 (516)
Q Consensus 234 ~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~p 275 (516)
.+...+-==+|+.|++++++.++-+.+.+...+..+.+.-..
T Consensus 184 ~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 184 PVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred eEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccH
Confidence 887777666899999999999999999998877665544333
No 143
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.25 E-value=7.4e-05 Score=76.26 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHh---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~---~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~ 183 (516)
..+.++++++++.... .+...|.|+|++.+.+. + .+.++++.+.+ .+ ..+.+. ++-....+.+.++.
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~-~---~l~~l~~~~k~-~g----~~~~i~-TnG~~~~~~~~~ll 174 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQP-E---FALALLQACHE-RG----IHTAVE-TSGFTPWETIEKVL 174 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchH-H---HHHHHHHHHHH-cC----CcEeee-CCCCCCHHHHHHHH
Confidence 3468888888876432 24457888885544321 1 13466666643 21 123332 22212223333332
Q ss_pred HHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 184 ~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi--~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
.. +..+.+.+.+.+++..+++.. .+.+.+++.++.+.+. ++ .+++-+|-|+ .++.+++.+.++++.++
T Consensus 175 ---~~---~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~~ 244 (295)
T TIGR02494 175 ---PY---VDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAA--GKNVVIRIPVIPGF-NDSEENIEAIAAFLRKL 244 (295)
T ss_pred ---hh---CCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhC--CCcEEEEeceeCCc-CCCHHHHHHHHHHHHHh
Confidence 21 456788999999988877643 4678899999999998 65 4455556555 47889999999999999
Q ss_pred C--CCeEEEEEeeecCCCcc
Q 010162 262 K--FPQVHISQFYPRPGTPA 279 (516)
Q Consensus 262 ~--~d~v~if~~sp~pGTpa 279 (516)
+ +..+++.+|.|.+..+.
T Consensus 245 ~~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 245 EPGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred ccCCceEEecCCCchhHHHH
Confidence 8 68999999999877664
No 144
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.11 E-value=5.4e-05 Score=77.07 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC---------------CCCceEEEe
Q 010162 108 YTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP---------------DGSTMLRIG 168 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~Gv----keI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~---------------~~~~~iri~ 168 (516)
-|.++--..+++|...|- -|+++.|+.|.+...+....| ++.+...+.+ .....+-+.
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~F---I~nLHdALSGhts~~v~EAv~yse~s~tKCiGiT 226 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYF---IRNLHDALSGHTSANVEEAVKYSERSLTKCIGIT 226 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHH---HHHHHHHhcCCCccCHHHHHHhhhhccceeeeEE
Confidence 356667777788877653 356777877777644321111 1111111110 001122222
Q ss_pred -ecCCcch-HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 010162 169 -MTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 246 (516)
Q Consensus 169 -~~~P~~i-~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGE 246 (516)
.++|+.- ..++ .+|+..+ |.++.||+||.-+++.+.-||+||+..+-+.+...+++ |+.+.+++|-.+|+-
T Consensus 227 IETRPDyC~~~Hl---~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNV 299 (554)
T KOG2535|consen 227 IETRPDYCLKRHL---SDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNV 299 (554)
T ss_pred eecCcccchhhhH---HHHHhcC--CceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCC
Confidence 2566654 3444 3455555 89999999999999999999999999999999999999 999999999999986
Q ss_pred CH-HHHHHHHHHHHhc--CCCeEEEEEeeecCCCccccCC------CCCHHHHHHHHHHHHHH
Q 010162 247 TD-EDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSV 300 (516)
Q Consensus 247 Te-edf~etl~fi~el--~~d~v~if~~sp~pGTpa~~~~------~v~~~~~~eR~~~L~~l 300 (516)
.. .|+++..++++.- +.|.+.+++--...||-+|+++ .-|+...-+-..++..+
T Consensus 300 g~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILal 362 (554)
T KOG2535|consen 300 GMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILAL 362 (554)
T ss_pred chhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhh
Confidence 54 5788888888755 5688999999999999998876 24555444444444333
No 145
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.10 E-value=0.00023 Score=73.56 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=131.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCc-CCCCHHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.-.+.+..+.+|+-.|.||--..+.|.. ..++.+++-.-+.++.+. -+++|.|+|+|-..... ..+..++++|.
T Consensus 110 ~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L~- 185 (369)
T COG1509 110 PDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRLR- 185 (369)
T ss_pred CCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHHh-
Confidence 4467889999999999999876665543 335888888888888876 78999999988776543 24788888886
Q ss_pred hCCCCCCceEEEee----cCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 156 ELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 156 ~i~~~~~~~iri~~----~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.++ -...+||++ ..|..+++++.++.+ ....-.++..-+.|.. ..| .+..+++++++++
T Consensus 186 ~Ip--Hv~iiRi~TR~pvv~P~RIt~~L~~~l~---~~~~~v~~~tH~NHp~---------Eit-~e~~~A~~~L~~a-- 248 (369)
T COG1509 186 AIP--HVKIIRIGTRLPVVLPQRITDELCEILG---KSRKPVWLVTHFNHPN---------EIT-PEAREACAKLRDA-- 248 (369)
T ss_pred cCC--ceeEEEeecccceechhhccHHHHHHHh---ccCceEEEEcccCChh---------hcC-HHHHHHHHHHHHc--
Confidence 354 357889986 567777777755442 2111223333333322 123 5689999999999
Q ss_pred CCEE-EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC
Q 010162 232 GMQI-ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 232 Gi~i-~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
|+.+ +-.++.-.-+++.+.+.+..+-+.+.++.--++|..-+-+|+.-+..
T Consensus 249 Gv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~ 300 (369)
T COG1509 249 GVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRV 300 (369)
T ss_pred CceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceec
Confidence 9864 44555544589999999999999999987777888888888876643
No 146
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.07 E-value=0.00041 Score=68.95 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=91.2
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccC-----CCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 152 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~r-----G~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~ 152 (516)
....||.+ .|||.+|.||..++.. +..+..+.++++++++.+...|++.|.|+|++...+ ..+.++++.
T Consensus 22 ~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~ 95 (238)
T TIGR03365 22 QKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDL 95 (238)
T ss_pred CeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHH
Confidence 33456766 6999999999987632 122347899999999988767889999999765544 137888888
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+ .+ ..+.+. ++-....+. +.. +.++.+.+-..+.. .....+...+.++.+++ +
T Consensus 96 l~~-~g----~~v~le-TNGtl~~~~---l~~-------~d~v~vs~K~~~sg------~~~~~~~~~~~ik~l~~---~ 150 (238)
T TIGR03365 96 GKA-KG----YRFALE-TQGSVWQDW---FRD-------LDDLTLSPKPPSSG------METDWQALDDCIERLDD---G 150 (238)
T ss_pred HHH-CC----CCEEEE-CCCCCcHHH---Hhh-------CCEEEEeCCCCCCC------CCCcHHHHHHHHHHhhh---c
Confidence 864 22 234443 443332321 111 34666666544431 12245666777777776 3
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
.....-|+++ ++.|++...++....
T Consensus 151 ~~~~vK~Vv~----~~~d~~~a~~~~~~~ 175 (238)
T TIGR03365 151 PQTSLKVVVF----DDADYAYAKEVHARY 175 (238)
T ss_pred CceEEEEEEC----CcccHHHHHHHHHhc
Confidence 5667777777 233355555555444
No 147
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00043 Score=69.76 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=100.5
Q ss_pred EEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHH-HH--HhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 80 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TV--IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 80 ~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~-~L--~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
..++-..-|||++|.||..+.....-+..+.+++..|+- .. ...+..-|.++|++.+.. . .-+.++++...+.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q-~---e~~~~~~~~ake~ 111 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQ-A---EFALDLLRAAKER 111 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhh-H---HHHHHHHHHHHHC
Confidence 456677899999999999887653212233333332222 11 122667788888544332 1 1245555555432
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--E
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--Q 234 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi--~ 234 (516)
+ -....-.-++..+.. +.++.+ .+..+.+-+=..+++..+..- +.+.+.+++.++.+.+. |+ .
T Consensus 112 -G-l~~~l~TnG~~~~~~----~~~l~~------~~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~ve 176 (260)
T COG1180 112 -G-LHVALDTNGFLPPEA----LEELLP------LLDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVHVE 176 (260)
T ss_pred -C-CcEEEEcCCCCCHHH----HHHHHh------hcCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCeEE
Confidence 1 101111222233322 222332 156788888889998655543 33448999999999997 66 4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEee
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFY 272 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~-~d~v~if~~s 272 (516)
+++-+|=|+ .++++++++.++|+.++. ...+++.+|.
T Consensus 177 ~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fh 214 (260)
T COG1180 177 IRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFH 214 (260)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEeccc
Confidence 556666554 578999999999999853 2344444443
No 148
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.93 E-value=0.00086 Score=71.04 Aligned_cols=197 Identities=12% Similarity=0.132 Sum_probs=122.9
Q ss_pred CCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhC-CCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE
Q 010162 89 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 165 (516)
Q Consensus 89 C~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~-Gvke--I~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~i 165 (516)
|+.+|.||..+...-..+..+.+-+.+-|+.+.+. +.+. |.+.|+.....|.+ +.+.+..+.++... ..++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~----f~~~~~~l~~k~~~--~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLD----FYRKAVALQQKYAN--GKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHH----HHHHHHHHHHHHhc--CCee
Confidence 99999999887654333346666666666666664 4455 55556555544443 34444443333322 2445
Q ss_pred EEee-cCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcC----CCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 166 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN----REYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 166 ri~~-~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn----R~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
..+. +|-..+++++.++.+ +.+ + .|.|.+.. ..++-.+.+ =.-|.+.+.+.++.|++. ++.+.+...
T Consensus 92 ~~siqTNg~LL~~e~~e~l~--~~~--~-~IgISiDG-p~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v 163 (378)
T COG0641 92 SNALQTNGTLLNDEWAEFLA--EHD--F-LIGISIDG-PEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV 163 (378)
T ss_pred EEEEEEcccccCHHHHHHHH--hcC--c-eEEEeccC-chHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE
Confidence 5443 566677777754432 332 4 67776643 244433322 233799999999999998 877776666
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHH
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 301 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~ 301 (516)
..-++.+...+.++|+.+.+...+.+.+..+..++...... +++.++-.+....+.+.+
T Consensus 164 --v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~ 223 (378)
T COG0641 164 --VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEW 223 (378)
T ss_pred --EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHH
Confidence 56799999999999999999778887666655555321122 677666555555555544
No 149
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.91 E-value=0.00046 Score=72.53 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=127.8
Q ss_pred CCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCc-----EEEEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE
Q 010162 92 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK-----EVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 165 (516)
Q Consensus 92 ~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~Gvk-----eI~l~-g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~i 165 (516)
.|.||.....--.....++..|.+|... +.|+. .+... +.+++.| .++.++.++.....+ +.++
T Consensus 43 ~C~~cy~~v~~~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~~---d~~~ 112 (414)
T COG1625 43 GCDDCYLSVNELDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYYK---DDDI 112 (414)
T ss_pred cccceeeEEecccCCCCCHhHhhccccc--ccccccccccceeecCCCCcccC-----cchhhhhhHHHhhcC---Cccc
Confidence 4999987543111134577778777753 12222 12222 2233333 235666666654332 3578
Q ss_pred EEeecCCcch--HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 010162 166 RIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243 (516)
Q Consensus 166 ri~~~~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf 243 (516)
|++|+.-..+ ++....+ ...+ +.-+.+.++|.++++.++|-|....++.++.++++.++ .+.+.+++++ .
T Consensus 113 rL~~tsG~~~~lt~~~~~i---~~~g--vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl-~ 184 (414)
T COG1625 113 RLSFTSGSGFTLTNRAERI---IDAG--VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVL-C 184 (414)
T ss_pred eeeeeeccceeccchHHHH---HHcC--CCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEE-c
Confidence 8887655433 2233222 3333 78899999999999999988999999999999999999 8899999987 5
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC--CCCHHHHHHHHHHHHHHHHHH
Q 010162 244 PGET-DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSRELTSVFEAF 304 (516)
Q Consensus 244 PGET-eedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~--~v~~~~~~eR~~~L~~l~~~~ 304 (516)
||=+ -+++.+|++.+.+.+.+.+.++.+.|.-.|.....- ++.+++ .++++++++++
T Consensus 185 PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~----l~~~k~i~re~ 244 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHE----LEEFKEIVREF 244 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHH----HHHHHHHHHHH
Confidence 9988 899999999999999998888887777666544421 344333 44555555554
No 150
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.47 E-value=0.0034 Score=63.14 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=102.8
Q ss_pred CCCCCCCcCcccCcc--CCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCce
Q 010162 87 VGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 164 (516)
Q Consensus 87 rGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~ 164 (516)
-||+++|-||.-.-+ .|.-+...++++.+-+..+.+.|.+.|.|+|+|.+.+- ..+.+.|+.+...+| .
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~l----p~Ile~l~~~~~~iP-----v 196 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHL----PFILEALRYASENIP-----V 196 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCch----HHHHHHHHHHhcCCC-----E
Confidence 699999999986433 23335667999999999999999999999997554321 113344443333332 2
Q ss_pred EEEeecCCcchHHHHHHHHHHHcCCCCccEEEec-ccCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 010162 165 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP-VQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICG 242 (516)
Q Consensus 165 iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iG-lQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pGi~i~td~IvG 242 (516)
++-+.+ ..+.+..++.. + +--|.+| +-=|+|+--.+..+ +.=++-..+.+..+.+...|+-++--++
T Consensus 197 vwNSnm---Y~s~E~l~lL~----g--vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVl-- 265 (335)
T COG1313 197 VWNSNM---YMSEETLKLLD----G--VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVL-- 265 (335)
T ss_pred EEecCC---ccCHHHHHHhh----c--cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEec--
Confidence 222211 22333333322 1 1122222 34467877666654 3334566777777777755566665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCccccCC
Q 010162 243 FPGETDEDFNQTVNLIKEYKFPQVHISQF-YPRPGTPAARMK 283 (516)
Q Consensus 243 fPGETeedf~etl~fi~el~~d~v~if~~-sp~pGTpa~~~~ 283 (516)
||.-+.=-...++|+.++-.+.+.+... .-+|--.+++++
T Consensus 266 -PghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eyp 306 (335)
T COG1313 266 -PGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYP 306 (335)
T ss_pred -CCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhch
Confidence 6654443567789999887655555432 223444566665
No 151
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.23 E-value=0.012 Score=62.87 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=83.3
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH-HHHHHHHHHHHhcC---CCeEE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEYK---FPQVH 267 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETe-edf~etl~fi~el~---~d~v~ 267 (516)
..-+.+.+.+.+++..++|=+.-..+++++.++++.++ ||.+++.+++ .||=+. +++++|++.+.+++ ...+.
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~Ti~dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERTLRDLAQFHDGDWPTVL 215 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHHHHHHHhhcccCCCcee
Confidence 45699999999999999886666889999999999999 9999998876 599887 79999999999992 23333
Q ss_pred EEEeeecCCCcc----ccCCCCCHHHHHHHHHHHHHHHHHH
Q 010162 268 ISQFYPRPGTPA----ARMKKVPSAVVKKRSRELTSVFEAF 304 (516)
Q Consensus 268 if~~sp~pGTpa----~~~~~v~~~~~~eR~~~L~~l~~~~ 304 (516)
--.-.|.-=|.. +.+...+++...+-.+.+..+|+++
T Consensus 216 S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~~ 256 (433)
T TIGR03279 216 SVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQF 256 (433)
T ss_pred EEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 333344444443 3334677777777777777777654
No 152
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.19 E-value=0.023 Score=55.65 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHHh---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 182 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~---~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL 182 (516)
+..++|+|+++++.-.. .+-.-|.|+|++...+. + -+.++++.+.+ .+ ....+.+ +-..-.+.+.++
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~-~---fl~~l~~~~k~-~g----i~~~leT-nG~~~~~~~~~l 86 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQA-E---FATRFLQRLRL-WG----VSCAIET-AGDAPASKLLPL 86 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCH-H---HHHHHHHHHHH-cC----CCEEEEC-CCCCCHHHHHHH
Confidence 34789999999886432 23356888886554431 1 13566666543 22 2233321 110001233333
Q ss_pred HHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 183 ~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
.. .+..+.+-+=+.|++..++.- +.+.+.+++.++.+.+....+.+++-+|-|+ .++++++++..+|+.+++
T Consensus 87 ~~------~~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 87 AK------LCDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLG 158 (213)
T ss_pred HH------hcCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcC
Confidence 22 256788888888888877664 3567899999999999833457788888776 578999999999999998
Q ss_pred CCeEEEEEeeecCC
Q 010162 263 FPQVHISQFYPRPG 276 (516)
Q Consensus 263 ~d~v~if~~sp~pG 276 (516)
++.+++-+|.|.--
T Consensus 159 ~~~~~llpyh~~g~ 172 (213)
T PRK10076 159 IKQIHLLPFHQYGE 172 (213)
T ss_pred CceEEEecCCccch
Confidence 88899999988643
No 153
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=96.92 E-value=0.00081 Score=57.71 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=26.7
Q ss_pred HHHHHHhc---CCCcEEEEccccCcchh-h-hhCCcce-EEc
Q 010162 3 TLIAKCKS---AKKPLVVAGCVPQGSRD-L-KELEGVS-IVG 38 (516)
Q Consensus 3 ~iIr~~k~---~~~~VVV~GC~a~~~~~-~-~~~p~vD-vvG 38 (516)
..|+++++ ++++|+|+||+||.+++ + +..|+|| |+|
T Consensus 57 ~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 57 NRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred HHHHHHHHhcCCCCEEEEEeCccccChHHHHhhCCCeEEEeC
Confidence 34555655 45889999999999753 4 5678899 777
No 154
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=96.78 E-value=0.022 Score=58.26 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=99.4
Q ss_pred EEEeCCCCCCCCcCcccCccC-CCc----C---CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 010162 82 ILPINVGCLGACTYCKTKHAR-GHL----G---SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~r-G~~----r---sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I 153 (516)
-|-++-=||.+|-||-+...+ |+- . -.+.++|+.|++..-+.| +-++|+|...- .....+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGdPl~~----ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGDPLLE----IERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCChHHH----HHHHHHHHHHH
Confidence 345667799999999876543 331 1 235688888887765555 34566432210 12245666767
Q ss_pred HHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCcc--EEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 154 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS--FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 154 ~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~--~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
.++++. .+.+++ |++....+++. |.++..++ +. ++|.+ ..+. ...+.+.+.+..+++.
T Consensus 104 K~efG~--~fHiHL-YT~g~~~~~e~--l~~L~eAG--LDEIRfHp~--~~~~---------~~~e~~i~~l~~A~~~-- 163 (353)
T COG2108 104 KDEFGE--DFHIHL-YTTGILATEEA--LKALAEAG--LDEIRFHPP--RPGS---------KSSEKYIENLKIAKKY-- 163 (353)
T ss_pred HHhhcc--ceeEEE-eeccccCCHHH--HHHHHhCC--CCeEEecCC--Cccc---------cccHHHHHHHHHHHHh--
Confidence 666543 245554 56555556555 34444444 44 44544 1111 1346788999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEe
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 271 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~ 271 (516)
|+.+..-+ -..||+ ++.+.+.+.++.+.+++.+++.-+
T Consensus 164 g~dvG~Ei-Paipg~-e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 164 GMDVGVEI-PAIPGE-EEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred Cccceeec-CCCcch-HHHHHHHHHHHHhcccceeeeeee
Confidence 77766654 356776 456778889999999888887653
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.41 E-value=0.008 Score=55.41 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=47.2
Q ss_pred EEEeCCCCCCCCcCcccCccCCC--cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 82 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
.+-.-.|||.+|.||..|..... ....+.++++++|+.+. ..+..|.|+|++ ..+ ..+.++++.+.+
T Consensus 18 ~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 18 LAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 34445799999999998866322 24578999999998865 346789999987 211 136777777654
No 156
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.011 Score=57.68 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=49.9
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCC-----CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 152 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG-----~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~ 152 (516)
....||.+ -|||.+|.||..+++.. .....+.++|+++++.+.. +.+.|.|+|++.... ..+.+|++.
T Consensus 22 r~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~-~~~~V~lTGGEP~~~-----~~l~~Ll~~ 94 (212)
T COG0602 22 RPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY-KARGVSLTGGEPLLQ-----PNLLELLEL 94 (212)
T ss_pred ceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC-CcceEEEeCCcCCCc-----ccHHHHHHH
Confidence 34456644 49999999999886643 3467789999999987532 345899999765221 236778877
Q ss_pred HHH
Q 010162 153 IVA 155 (516)
Q Consensus 153 I~~ 155 (516)
+.+
T Consensus 95 l~~ 97 (212)
T COG0602 95 LKR 97 (212)
T ss_pred HHh
Confidence 753
No 157
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.11 E-value=0.021 Score=49.78 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=29.4
Q ss_pred eCCCCCCCCcCcccCccC--CCcCCCCHHHHHHHHHHHHhCCC--cEEEEeecCCC
Q 010162 85 INVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTG 136 (516)
Q Consensus 85 isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~EI~~L~~~Gv--keI~l~g~n~~ 136 (516)
++.+|+.+|.||...... ......+.+.+.+.++.+.+.+. ..|.|+|++.+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPl 59 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPL 59 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGG
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCc
Confidence 468999999999975432 22356678899998888877766 56999986544
No 158
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.10 E-value=0.44 Score=47.38 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
..++.++.++-++.|.+.|+..|-+.+.....+- .......++++.+.+..+ ..++..+.+.. .+. +..+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~-----~~~~~~l~~~~-~~~---i~~a 83 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP-----NVKLQALVRNR-EKG---IERA 83 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC-----CcEEEEEccCc-hhh---HHHH
Confidence 4568999999999999999999998875433111 112346777888765432 22332222211 122 3333
Q ss_pred HcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CCCHHHHHHHHHHHHhc
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKEY 261 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfP-GETeedf~etl~fi~el 261 (516)
.+.+ ...+++.+ ++++.-. ...+|+. ..+...+.++.+++. |+.+..+++.-+. ..+.+.+.+.++.+.++
T Consensus 84 ~~~g--~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 84 LEAG--VDEVRIFD-SASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred HhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 3443 67888888 4555333 3345543 678899999999999 9999999876663 48999999999999999
Q ss_pred CCCeEEEE
Q 010162 262 KFPQVHIS 269 (516)
Q Consensus 262 ~~d~v~if 269 (516)
+++.+.+.
T Consensus 159 g~~~i~l~ 166 (265)
T cd03174 159 GADEISLK 166 (265)
T ss_pred CCCEEEec
Confidence 98887754
No 159
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=95.94 E-value=0.0064 Score=54.45 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=37.4
Q ss_pred eCCCCCCCCcCcccCccCCCc--CCCCHHHHHHHH-HHHHhCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHh
Q 010162 85 INVGCLGACTYCKTKHARGHL--GSYTVESLVGRV-RTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 85 isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~EI-~~L~~~GvkeI~l~g~n~~~y-g~d~~~~l~eLL~~I~~~ 156 (516)
.+.||+.+|.||..+...... ...+ .+.++++ +.+.+.+...|.|+|++...+ .. ..+.++++.+.+.
T Consensus 11 ~t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEK 82 (139)
T ss_dssp EEC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHT
T ss_pred EcCcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHh
Confidence 378899999999876554322 1223 4455554 444457999999999665441 12 2367777777654
No 160
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=94.73 E-value=0.084 Score=48.87 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCCCCCcCcccCccCCC--cCCCC---HHHHHHHHHHHHhCC-CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 87 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 87 rGC~~~CsFC~ip~~rG~--~rsr~---~e~Iv~EI~~L~~~G-vkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
.|||.+|.||..|..... -...+ +++|++++. +.+ +..|.|+|++...... ...+.++++.+.+.
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~---~~~~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLN---DNPLIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHH---hcCCcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 799999999998865421 24566 555665554 333 5679999976654310 01366777776543
No 161
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.65 E-value=1.7 Score=45.65 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC--CcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~--d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~ 183 (516)
...+.++-++-++.|.+.|++.|-.... .... ....+..+.++.+.. ... .++..+-| ...++.
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~~-----~~~~~l~~-----n~~die 128 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LEG-----ARFPVLTP-----NLKGFE 128 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-ccC-----CceeEEcC-----CHHHHH
Confidence 5788999999999999999999986532 1111 011234556666643 221 12222222 112233
Q ss_pred HHHcCCCCccEEEecccCCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCH---HHHHHHH
Q 010162 184 EVLRHPCVYSFLHVPVQSGSDAVLSA-MNREY--TLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETD---EDFNQTV 255 (516)
Q Consensus 184 ~l~~~~~~~~~i~iGlQSgsd~vLk~-MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~--IvGfPGETe---edf~etl 255 (516)
...+.+ +..+++.+ |.||..+++ +|+.. ..+.+.++++.+++. |+.+..++ .+|.|.++. +.+.+.+
T Consensus 129 ~A~~~g--~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~~ 203 (347)
T PLN02746 129 AAIAAG--AKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYVA 203 (347)
T ss_pred HHHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHHH
Confidence 333343 77899998 888877664 45432 445566788999998 88887666 678887744 5566666
Q ss_pred HHHHhcCCCeEEEE
Q 010162 256 NLIKEYKFPQVHIS 269 (516)
Q Consensus 256 ~fi~el~~d~v~if 269 (516)
+.+.+.+.+.+.+-
T Consensus 204 ~~~~~~Gad~I~l~ 217 (347)
T PLN02746 204 KELYDMGCYEISLG 217 (347)
T ss_pred HHHHHcCCCEEEec
Confidence 66777788776543
No 162
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=94.28 E-value=2.7 Score=39.80 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCCCCCCcCcccCccCCC----cCCCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 010162 86 NVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 160 (516)
Q Consensus 86 srGC~~~CsFC~ip~~rG~----~rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~ 160 (516)
.-||+..|.||-....+-+ ....+|++|++.+.++.+ .|..-+.+.|... ..+++ .+.++++-+ ..
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~l~~E---HvlevIeLl----~~- 118 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-ILGRE---HVLEVIELL----VN- 118 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-cccHH---HHHHHHHhc----cC-
Confidence 5799999999976322111 124578999988877765 5999898888532 23332 233333322 21
Q ss_pred CCceEEEeecCCcch--HHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 161 GSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--EYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 161 ~~~~iri~~~~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR--~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
...-+. ++-..+ +..+ ...+.+... ..+.+.+--.+++...++-- +--..--+++++.+.+. |+.+.
T Consensus 119 --~tFvlE-TNG~~~g~drsl--v~el~nr~n--v~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~--g~rf~ 189 (228)
T COG5014 119 --NTFVLE-TNGLMFGFDRSL--VDELVNRLN--VLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGK--GHRFW 189 (228)
T ss_pred --ceEEEE-eCCeEEecCHHH--HHHHhcCCc--eEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhc--Cceee
Confidence 122222 222222 3444 223334443 35677788889988877631 11134446777777777 88888
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el 261 (516)
.-++.+|- +++...+...-+-++
T Consensus 190 pA~~~~f~--~Ed~~k~Lak~Lgeh 212 (228)
T COG5014 190 PAVVYDFF--REDGLKELAKRLGEH 212 (228)
T ss_pred ehhhhccc--hhhhHHHHHHHhccC
Confidence 88898884 333333444445444
No 163
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=94.08 E-value=0.24 Score=45.86 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCCCCCCcCcccCccCCCc--CCCC---HHHHHHHHHHHHhCCC--cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 87 VGCLGACTYCKTKHARGHL--GSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 87 rGC~~~CsFC~ip~~rG~~--rsr~---~e~Iv~EI~~L~~~Gv--keI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.|||.+|.||..+...... ...+ .++|+++++ ..+. ..|.|+|++.... .. ...+.++++++.+..+
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~~ 97 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAECP 97 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHCC
Confidence 8999999999887653111 1233 344444433 2333 5688888765431 11 1235566676655443
No 164
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.51 E-value=3 Score=42.70 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-+..-....+.... .+-.+.++.+.+ .+ ..++..+.+. +.++...
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~-~~-----~~~~~~l~~~-----~~~ie~A 88 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQR-RP-----GVTYAALTPN-----LKGLEAA 88 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhc-cC-----CCeEEEEecC-----HHHHHHH
Confidence 4678999999999999999999987521111111110 123456666643 22 1222222231 1223333
Q ss_pred HcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~Iv--GfPGE---Teedf~etl~f 257 (516)
.+.+ ...+++.+ |.|+..+ +.+++.. ..+.+.++++.+++. |+.+...+.. |-|.+ +++.+.+.++.
T Consensus 89 ~~~g--~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
T PRK05692 89 LAAG--ADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAER 163 (287)
T ss_pred HHcC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 3333 67788776 5666544 3455542 445688899999999 8888776664 55776 67788888888
Q ss_pred HHhcCCCeEEE
Q 010162 258 IKEYKFPQVHI 268 (516)
Q Consensus 258 i~el~~d~v~i 268 (516)
+.+.+.+.+.+
T Consensus 164 ~~~~G~d~i~l 174 (287)
T PRK05692 164 LFALGCYEISL 174 (287)
T ss_pred HHHcCCcEEEe
Confidence 88889887654
No 165
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=92.82 E-value=0.17 Score=44.90 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=39.2
Q ss_pred HHHHHHhc--CCCcEEEEccccCcchh-hhhCCcce-E-EcCCChhHHHHHHHHHhcCC
Q 010162 3 TLIAKCKS--AKKPLVVAGCVPQGSRD-LKELEGVS-I-VGVQQIDRVVEVVEETLKGH 56 (516)
Q Consensus 3 ~iIr~~k~--~~~~VVV~GC~a~~~~~-~~~~p~vD-v-vG~~~~~~i~~ll~~~~~g~ 56 (516)
++++.+|+ ++.+||+||.+++..++ ....+.+| | .|+++ ..++++++....|+
T Consensus 57 ~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g~ 114 (127)
T cd02068 57 ELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEGE 114 (127)
T ss_pred HHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcCC
Confidence 45666666 45789999999998755 34567899 4 67665 69999998876553
No 166
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.38 E-value=6.2 Score=40.10 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
.+.+.|+-++-++.|.+.|+++|-+..--.+.+.. ......++++.+.. .. ..++....+. .+. +...
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p-~~~d~~~~~~~l~~-~~-----~~~~~~~~~~--~~d---v~~A 82 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVP-QMADAEEVLAGLPR-RP-----GVRYSALVPN--LRG---AERA 82 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccc-ccCCHHHHHhhccc-CC-----CCEEEEECCC--HHH---HHHH
Confidence 56789999999999999999999876311111000 01123344444422 11 1233322221 122 3333
Q ss_pred HcCCCCccEEEecccCCCHHH-HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~I--vGfPGE---Teedf~etl~f 257 (516)
.+.+ ...+++.+- .||.. .+.+++. ...+...+.++.+++. |+.+...+. +|.|.+ +.+.+.+.++.
T Consensus 83 ~~~g--~~~i~i~~~-~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 83 LAAG--VDEVAVFVS-ASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred HHcC--cCEEEEEEe-cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 3333 677888874 45544 4456665 3557788889999999 887776666 555655 45667777777
Q ss_pred HHhcCCCeEEE
Q 010162 258 IKEYKFPQVHI 268 (516)
Q Consensus 258 i~el~~d~v~i 268 (516)
+.+.+.+.+.+
T Consensus 158 ~~~~Ga~~i~l 168 (274)
T cd07938 158 LLDLGCDEISL 168 (274)
T ss_pred HHHcCCCEEEE
Confidence 77888876654
No 167
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.54 E-value=13 Score=37.53 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-+.. +.... ...+.++.+.. .... ..+ ...+.+. .+. +...
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~----~~~~~~~~l~~-~~~~--~~v-~~~~r~~--~~d---i~~a 80 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS---PAASP----QSRADCEAIAK-LGLK--AKI-LTHIRCH--MDD---ARIA 80 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCCH----HHHHHHHHHHh-CCCC--CcE-EEEecCC--HHH---HHHH
Confidence 577999999999999999999998764 22222 24555555543 2211 122 2223332 122 2222
Q ss_pred HcCCCCccEEEecccCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk~-MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
.+. +++.+++.+ +.||..++. +++. ...+.+.++++.+++. |+.+..++.-.| +-+.+.+.+.++.+.+++
T Consensus 81 ~~~--g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~g 154 (262)
T cd07948 81 VET--GVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKLG 154 (262)
T ss_pred HHc--CcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHcC
Confidence 333 366777776 667766654 4433 2455677778999998 999988887666 345788888899999998
Q ss_pred CCeEEE
Q 010162 263 FPQVHI 268 (516)
Q Consensus 263 ~d~v~i 268 (516)
++.+.+
T Consensus 155 ~~~i~l 160 (262)
T cd07948 155 VNRVGI 160 (262)
T ss_pred CCEEEE
Confidence 886543
No 168
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.94 E-value=9.6 Score=38.17 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-~~P~~i~~~l~eL~~ 184 (516)
...+.++.++-++.|.+.|++.|-+. ++..+. .-.+.++.+.+... ..++.. .++. .+.+ ..
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~----~~~e~~~~l~~~~~-----~~~~~~~~r~~--~~~v---~~ 77 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG---IPAMGE----EEREAIRAIVALGL-----PARLIVWCRAV--KEDI---EA 77 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCH----HHHHHHHHHHhcCC-----CCEEEEeccCC--HHHH---HH
Confidence 46789999999999999999999874 222222 12356777754222 122222 2221 1222 22
Q ss_pred HHcCCCCccEEEecccCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
.... +++.+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++... .-+++.+.+.++.+.+.
T Consensus 78 a~~~--g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 78 ALRC--GVTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHhC--CcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHC
Confidence 2233 367788877 6666544 466643 2445677888999998 887765555443 24577888888888888
Q ss_pred CCCeEEE
Q 010162 262 KFPQVHI 268 (516)
Q Consensus 262 ~~d~v~i 268 (516)
+.+.+.+
T Consensus 152 G~~~i~l 158 (259)
T cd07939 152 GADRLRF 158 (259)
T ss_pred CCCEEEe
Confidence 8886543
No 169
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.67 E-value=0.34 Score=42.14 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=32.2
Q ss_pred HHHHHHHhcC--CCcEEEEccccCcchh--hhhCCcce--EEcCCChhHHHHHH
Q 010162 2 DTLIAKCKSA--KKPLVVAGCVPQGSRD--LKELEGVS--IVGVQQIDRVVEVV 49 (516)
Q Consensus 2 ~~iIr~~k~~--~~~VVV~GC~a~~~~~--~~~~p~vD--vvG~~~~~~i~~ll 49 (516)
..+++.+|+. +.+|++||-+++..++ ++..+++| +.|+++. .+++++
T Consensus 69 ~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE~-~~~~l~ 121 (121)
T PF02310_consen 69 KRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGEE-AFPELL 121 (121)
T ss_dssp HHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTSS-HHHH--
T ss_pred HHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCChHH-hhcccC
Confidence 3566777664 5689999999988654 33337888 5888874 777654
No 170
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=88.07 E-value=37 Score=35.54 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-----n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l 179 (516)
...+.+++++-++.|.+.|+..|-+.-. ..+.||.... .-.+.++++.+..+. .++. .+.|..-+.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~e~i~~~~~~~~~-----~~~~~ll~pg~~~~-- 90 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDLEYIEAAADVVKR-----AKVAVLLLPGIGTV-- 90 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC-ChHHHHHHHHHhCCC-----CEEEEEeccCccCH--
Confidence 3568999999999999999999988621 1222333221 224566666654431 2333 334422111
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~ 259 (516)
.++......+ ...+.+.. +.+ ..+...+.++.+|+. |+.+...++..+ .-|++.+.+.++.+.
T Consensus 91 ~dl~~a~~~g--vd~iri~~-~~~-----------e~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~ 153 (333)
T TIGR03217 91 HDLKAAYDAG--ARTVRVAT-HCT-----------EADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLME 153 (333)
T ss_pred HHHHHHHHCC--CCEEEEEe-ccc-----------hHHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHH
Confidence 2233333333 66777765 222 235678999999999 999988888775 578899999999999
Q ss_pred hcCCCeEEEE
Q 010162 260 EYKFPQVHIS 269 (516)
Q Consensus 260 el~~d~v~if 269 (516)
+.+.+.+.+-
T Consensus 154 ~~Ga~~i~i~ 163 (333)
T TIGR03217 154 SYGADCVYIV 163 (333)
T ss_pred hcCCCEEEEc
Confidence 9998876543
No 171
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=87.72 E-value=5 Score=39.36 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~ 186 (516)
..+.++.++-++.|.+.|+..|-+. +...+.+ -.+.++.+.+..+. .....+.......+...+ ..+.
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~----~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~---~~~~ 77 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASED----DFEQVRRLREALPN--ARLQALCRANEEDIERAV---EAAK 77 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSHH----HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHH---HHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCHH----HHHHhhhhhhhhcc--cccceeeeehHHHHHHHH---HhhH
Confidence 4788999999999999999999876 2222221 23344444433321 112222222222222212 2222
Q ss_pred cCCCCccEEEecccCCCHHH-HHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 010162 187 RHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 263 (516)
Q Consensus 187 ~~~~~~~~i~iGlQSgsd~v-Lk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~ 263 (516)
..+ ...+++.+ +.|+.. ...+++.. ..+.+.++++.+++. |+.+...++-.. .-+++.+.+.++.+.++++
T Consensus 78 ~~g--~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 78 EAG--IDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HTT--SSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT-
T ss_pred hcc--CCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcCC
Confidence 233 66777765 456644 44555432 457778888999998 888866555443 4578899999999999998
Q ss_pred CeEEEE
Q 010162 264 PQVHIS 269 (516)
Q Consensus 264 d~v~if 269 (516)
+.+.+-
T Consensus 152 ~~i~l~ 157 (237)
T PF00682_consen 152 DIIYLA 157 (237)
T ss_dssp SEEEEE
T ss_pred eEEEee
Confidence 887654
No 172
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.08 E-value=23 Score=37.62 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-+. ++..+.+ -.+.++.+.+. . ...++...... ..+.+ ...
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~~----~~e~i~~i~~~-~----~~~~i~~~~r~-~~~di---~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSED----EKEAIKAIAKL-G----LNASILALNRA-VKSDI---DAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcChH----HHHHHHHHHhc-C----CCeEEEEEccc-CHHHH---HHH
Confidence 46789999999999999999999863 3333321 23566666542 1 11233322211 12222 222
Q ss_pred HcCCCCccEEEecccCCCHHH-HHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
...+ ++.+++.+ +.||.. .+.+++. ...+.+.+.++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.+
T Consensus 85 ~~~g--~~~i~i~~-~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 158 (378)
T PRK11858 85 IDCG--VDAVHIFI-ATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAG 158 (378)
T ss_pred HhCC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCC
Confidence 3333 67888887 455544 4456643 2445666788889988 888777665443 356778888888888888
Q ss_pred CCeEEEE
Q 010162 263 FPQVHIS 269 (516)
Q Consensus 263 ~d~v~if 269 (516)
.+.+.+-
T Consensus 159 a~~I~l~ 165 (378)
T PRK11858 159 ADRVRFC 165 (378)
T ss_pred CCEEEEe
Confidence 8876544
No 173
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=85.81 E-value=26 Score=37.03 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~ 184 (516)
...+.++.++-++.|.+.|++.|-+. ++..+.+ -.+.++.+.+..+. .++. ..++. .+. +..
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~~----~~e~i~~i~~~~~~-----~~i~~~~r~~--~~d---i~~ 80 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVG---IPAMGEE----ERAVIRAIVALGLP-----ARLMAWCRAR--DAD---IEA 80 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHcCCC-----cEEEEEcCCC--HHH---HHH
Confidence 46789999999999999999999874 3333221 23567777543221 1222 23232 222 323
Q ss_pred HHcCCCCccEEEecccCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLS-AMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk-~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+.+.+ ...+++.+ +.||.-++ .+++.. ..+.+.++++.+++. |+.+..++.-+ +.-+.+.+.+.++.+.+.
T Consensus 81 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~-~r~~~~~l~~~~~~~~~~ 154 (365)
T TIGR02660 81 AARCG--VDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDA-SRADPDFLVELAEVAAEA 154 (365)
T ss_pred HHcCC--cCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCC-CCCCHHHHHHHHHHHHHc
Confidence 33333 56777777 66776554 455432 345566888889988 88776555543 234567777777888888
Q ss_pred CCCeEE
Q 010162 262 KFPQVH 267 (516)
Q Consensus 262 ~~d~v~ 267 (516)
+.+.+.
T Consensus 155 Ga~~i~ 160 (365)
T TIGR02660 155 GADRFR 160 (365)
T ss_pred CcCEEE
Confidence 887654
No 174
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=85.59 E-value=43 Score=33.83 Aligned_cols=148 Identities=16% Similarity=0.061 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchH-HHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~-~~l~eL~~ 184 (516)
...+.++.++-++.|.+.|++.|-+... ..+. .-.+.++.+.+ .........-+....+..+. +....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP---GSNP----KDTEFFARAKK-LKLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC---cCCH----HHHHHHHHHHH-cCCCCcEEEEEecccccCCCccchHHHHH
Confidence 4678999999999999999999987331 1111 12444555543 21101111111111112111 11112333
Q ss_pred HHcCCCCccEEEecccCCCHH-HHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-C--CCCHHHHHHHHHHH
Q 010162 185 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF-P--GETDEDFNQTVNLI 258 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~-vLk~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGf-P--GETeedf~etl~fi 258 (516)
+...+ ...+++.+ |.|+. ..+.+|+. ...+.+.+.++.+++. |+.+..+.+ .| . .-+++.+.+.++.+
T Consensus 87 a~~~g--~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~-~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 87 LLEAG--TPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAE-HFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHhCC--CCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEE-eccccCCCCHHHHHHHHHHH
Confidence 33333 66777765 44554 34556654 4667788899999999 888877543 33 2 23566667777888
Q ss_pred HhcCCCeEE
Q 010162 259 KEYKFPQVH 267 (516)
Q Consensus 259 ~el~~d~v~ 267 (516)
.+.+.+.+.
T Consensus 161 ~~~g~~~i~ 169 (273)
T cd07941 161 AEAGADWLV 169 (273)
T ss_pred HhCCCCEEE
Confidence 888888654
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=84.81 E-value=55 Score=34.32 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecC-----CCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSED-----TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n-----~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~ 180 (516)
...+.+++++-++.|.+.|+..|-+.-.+ .+.||... ..-.+.++.+.+..+. ..+.. ++.|..-+ ..
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~~---~~~~~-ll~pg~~~--~~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVKQ---AKIAA-LLLPGIGT--VD 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCCC---CEEEE-EeccCccc--HH
Confidence 35689999999999999999999876221 22223321 1235667777554431 22222 23342211 12
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~e 260 (516)
++......+ ...+.+.. +.++ .+...+.++.+|+. |+.+...++.. +.-+++.+.+.++.+.+
T Consensus 93 dl~~a~~~g--vd~iri~~-~~~e-----------~~~~~~~i~~ak~~--G~~v~~~l~~a-~~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYDAG--VRVVRVAT-HCTE-----------ADVSEQHIGLAREL--GMDTVGFLMMS-HMAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHcC--CCEEEEEE-ecch-----------HHHHHHHHHHHHHC--CCeEEEEEEec-cCCCHHHHHHHHHHHHh
Confidence 233333333 66777665 2222 35678999999999 99999888877 46789999999999999
Q ss_pred cCCCeEEE
Q 010162 261 YKFPQVHI 268 (516)
Q Consensus 261 l~~d~v~i 268 (516)
.+++.+.+
T Consensus 156 ~Ga~~i~i 163 (337)
T PRK08195 156 YGAQCVYV 163 (337)
T ss_pred CCCCEEEe
Confidence 99887654
No 176
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.68 E-value=47 Score=33.49 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCC-CCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 183 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~-~yg~d~~-~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~ 183 (516)
...+.++.++-++.|.+.|+..|-+.-.... .+..... ..-.+.++++.+... ....+.. +.++...+... +.
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~~~--l~ 89 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAV-MVDYGNDDIDL--LE 89 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEE-EECCCCCCHHH--HH
Confidence 3678999999999999999999876521111 1111100 001345666654321 0122222 34443322222 22
Q ss_pred HHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 010162 184 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 263 (516)
Q Consensus 184 ~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~ 263 (516)
.... +++..+++.+ .....+...+.++.+++. |+.+...++..+ +-+++.+.+.++.+.+.++
T Consensus 90 ~a~~--~gv~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g~ 152 (266)
T cd07944 90 PASG--SVVDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIKP 152 (266)
T ss_pred HHhc--CCcCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCCC
Confidence 2222 3367777765 223688999999999999 998888888776 5788999999999999998
Q ss_pred CeEEEE
Q 010162 264 PQVHIS 269 (516)
Q Consensus 264 d~v~if 269 (516)
+.+.+-
T Consensus 153 ~~i~l~ 158 (266)
T cd07944 153 DVFYIV 158 (266)
T ss_pred CEEEEe
Confidence 876543
No 177
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=84.47 E-value=6.6 Score=31.80 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=42.4
Q ss_pred CCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEee
Q 010162 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 371 (516)
Q Consensus 310 ~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~ 371 (516)
-.|.+.+|-|++..+.+. =+.|-.+| .|++ ++...|+.++++|+++.....++++++.
T Consensus 14 eeGe~y~V~I~d~g~~GD-GiarveGf-vVFV--p~a~~Gd~V~vkI~~v~~~~afaevve~ 71 (73)
T COG3269 14 EEGETYEVEIEDVGDQGD-GIARVEGF-VVFV--PGAEVGDEVKVKITKVKPNFAFAEVVER 71 (73)
T ss_pred ccCCEEEEEEEEeccCCC-ceEEEEEE-EEEe--CCCCCCCeeeEEEEEeeccceeeEEeec
Confidence 359999999998764432 13444443 3455 4467899999999999999999998864
No 178
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.39 E-value=46 Score=33.93 Aligned_cols=147 Identities=10% Similarity=0.106 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-CceEEEeecCCcchHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEHLKEIA 183 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~-~~~iri~~~~P~~i~~~l~eL~ 183 (516)
...+.++-++-++.|.+ .|+++|-+.. +..+.+ -.+.++++.+.-.... ....++...-|. ... +.
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~~---~~ 81 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DKS---VD 81 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HHH---HH
Confidence 46789999999999754 5999998653 222221 1244555543110000 001233222222 122 33
Q ss_pred HHHcCCCCccEEEecccCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE-cCC-CCCHHHHHHHHHHH
Q 010162 184 EVLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNLI 258 (516)
Q Consensus 184 ~l~~~~~~~~~i~iGlQSgsd~vLk-~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~Iv-GfP-GETeedf~etl~fi 258 (516)
...+. +++.+++.+ |.|+...+ .+|+. ...+++.+.++.+++. |+.+..++.- |-| .-+++.+.+.++.+
T Consensus 82 ~A~~~--g~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 82 WIKSA--GAKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHC--CCCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 33333 367888888 66665554 55653 3556678888888888 8888877774 223 34678888888889
Q ss_pred HhcCCCeEEEE
Q 010162 259 KEYKFPQVHIS 269 (516)
Q Consensus 259 ~el~~d~v~if 269 (516)
.+.+.+.+.+-
T Consensus 157 ~~~G~~~i~l~ 167 (280)
T cd07945 157 SDLPIKRIMLP 167 (280)
T ss_pred HHcCCCEEEec
Confidence 99998876543
No 179
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=83.95 E-value=46 Score=35.18 Aligned_cols=141 Identities=14% Similarity=0.041 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~ 184 (516)
...+.++.++-++.|.+.|++.|-+.. +..+.+ -.+.++.+.+... ..++. ..++. .+.+ ..
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~~----~~e~i~~i~~~~~-----~~~v~~~~r~~--~~di---~~ 79 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF---PIASEG----EFEAIKKISQEGL-----NAEICSLARAL--KKDI---DK 79 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCChH----HHHHHHHHHhcCC-----CcEEEEEcccC--HHHH---HH
Confidence 567899999999999999999998642 222221 2455666654221 11222 22221 2222 23
Q ss_pred HHcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+.+.+ +..+++-+ +.||..+ +.+++.. ..+.+.+.++.+++. |+.+...+.-.. .-+.+.+.+.++.+.+.
T Consensus 80 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDCG--VDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHcC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 33333 56777765 4566544 3556442 467788899999999 988888777654 45688888888889999
Q ss_pred CCCeEEEE
Q 010162 262 KFPQVHIS 269 (516)
Q Consensus 262 ~~d~v~if 269 (516)
+.+.+.+-
T Consensus 154 g~~~i~l~ 161 (363)
T TIGR02090 154 GADRINIA 161 (363)
T ss_pred CCCEEEEe
Confidence 98876654
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.06 E-value=56 Score=33.08 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCC-CceEEE----ee-cCCcchHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDG-STMLRI----GM-TNPPFILEH 178 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~--yg~d~~~~l~eLL~~I~~~i~~~~-~~~iri----~~-~~P~~i~~~ 178 (516)
..+.++.++-+..|.+.|+..|-+..+-.+. ++. ....-.+.++.+.+..+... ..+.|. ++ ..|..+.+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 5678999999999999999999876431100 110 01123556666665433211 112221 11 244444444
Q ss_pred HHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHH
Q 010162 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNL 257 (516)
Q Consensus 179 l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf-PGETeedf~etl~f 257 (516)
. +....+.+ ...+++.. +.|+ .+...+.++.+++. |+.+...+..-+ +.-|++.+.+.++.
T Consensus 96 d--i~~~~~~g--~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 96 F--VEKAAKNG--IDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAKE 157 (275)
T ss_pred H--HHHHHHcC--CCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 3 22223333 56677654 2232 57889999999999 887776665422 56778999999999
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+.+.+.+.+-
T Consensus 158 ~~~~Ga~~i~l~ 169 (275)
T cd07937 158 LEDMGADSICIK 169 (275)
T ss_pred HHHcCCCEEEEc
Confidence 999999887654
No 181
>PRK00915 2-isopropylmalate synthase; Validated
Probab=82.83 E-value=47 Score=36.87 Aligned_cols=145 Identities=10% Similarity=-0.056 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE-EeecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~ir-i~~~~P~~i~~~l~eL~~ 184 (516)
.+.+.++-++-++.|.+.|++.|-+.. +..+.+ -.+.++++.+.... ..+. +...++.+++..+ .+
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s~~----d~~~v~~i~~~~~~---~~i~a~~r~~~~did~a~---~a 87 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIEAGF---PASSPG----DFEAVKRIARTVKN---STVCGLARAVKKDIDAAA---EA 87 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC---CCCChH----HHHHHHHHHhhCCC---CEEEEEccCCHHHHHHHH---HH
Confidence 578999999999999999999998742 222221 13445666543321 2221 1112222222111 11
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
+... ....+++-+=+.+-.+...+++.. ..+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.+
T Consensus 88 ~~~~--~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~G 162 (513)
T PRK00915 88 LKPA--EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDAG 162 (513)
T ss_pred hhcC--CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHcC
Confidence 2223 356788777333334444555432 445566888899998 8776555544432 23566777777778888
Q ss_pred CCeEEE
Q 010162 263 FPQVHI 268 (516)
Q Consensus 263 ~d~v~i 268 (516)
.+.+.+
T Consensus 163 a~~i~l 168 (513)
T PRK00915 163 ATTINI 168 (513)
T ss_pred CCEEEE
Confidence 776543
No 182
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=81.49 E-value=5.2 Score=40.38 Aligned_cols=183 Identities=16% Similarity=0.283 Sum_probs=111.4
Q ss_pred EEeCCCCCCCCcCcccCccCC---CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 010162 83 LPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 159 (516)
Q Consensus 83 V~isrGC~~~CsFC~ip~~rG---~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~ 159 (516)
+..+.-|+.+|-||-....+. +.+..+.++++.-...+..+|+..+.|++++-... .|. .+....+. .++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~di----~~i~~g~~-~l~- 87 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QDI----VPIVAGLS-SLP- 87 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-ccc----cchhhhhh-ccc-
Confidence 345788999999998754431 12455678888877888889999999998755543 332 23333332 122
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh--CCCCEEEE
Q 010162 160 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIAT 237 (516)
Q Consensus 160 ~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~--~pGi~i~t 237 (516)
+...+.+.... ..+...+.++ -++ +...+.+.+.+....-...+-|..+...+...++...+. .| ..+..
T Consensus 88 -gLks~~ITtng-~vl~R~lp~l---hka--glssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn~ 159 (323)
T KOG2876|consen 88 -GLKSIGITTNG-LVLARLLPQL---HKA--GLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVNC 159 (323)
T ss_pred -chhhhceeccc-hhhhhhhhHH---Hhh--cccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-cceee
Confidence 11222332111 1111222222 222 367888888888888777787878888899999988865 23 45666
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH--hcCCCeEEEEEeeecCCCccccCC-CCCH
Q 010162 238 DIICGFPGETDEDFNQTVNLIK--EYKFPQVHISQFYPRPGTPAARMK-KVPS 287 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~--el~~d~v~if~~sp~pGTpa~~~~-~v~~ 287 (516)
-++=|+-+.. ..||+. +.++-.+.+-.|.|.-|-. |+.. -+|.
T Consensus 160 v~~k~~n~~e------v~Dfv~~tr~~p~DVrfIe~mpf~gn~-~~t~~lIpy 205 (323)
T KOG2876|consen 160 VVMKGLNEDE------VFDFVLLTRMRPLDVRFIEFMPFDGNK-WNTKSLIPY 205 (323)
T ss_pred EEEeccCCCc------ccceeeecCCCCcceEEEEecccCCCc-ccccccccH
Confidence 6677774432 334443 3344567778899998874 3333 4664
No 183
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=80.80 E-value=65 Score=32.33 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|+..|-+.. +..+.+ -.+.++.+.+..+. ..+. .++++. ...+...
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~----~~~~~~~l~~~~~~---~~~~-~l~r~~--~~~v~~a--- 78 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG----DFEAVKRIAREVLN---AEIC-GLARAV--KKDIDAA--- 78 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH----HHHHHHHHHHhCCC---CEEE-EEccCC--HhhHHHH---
Confidence 467899999999999999999998753 211111 13556666543331 2222 122222 1222212
Q ss_pred HcCC--CCccEEEecccCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 010162 186 LRHP--CVYSFLHVPVQSGSDAVLS-AMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260 (516)
Q Consensus 186 ~~~~--~~~~~i~iGlQSgsd~vLk-~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~e 260 (516)
.+.+ .....+.+-+ |.||.-++ .+++.. ..+.+.+.++.+++. |+.+....+.+. .-+++.+.+.++.+.+
T Consensus 79 ~~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (268)
T cd07940 79 AEALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIE 154 (268)
T ss_pred HHhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHH
Confidence 2222 1256676665 66776544 466543 457778899999998 887775555443 2467888888888888
Q ss_pred cCCCeEEE
Q 010162 261 YKFPQVHI 268 (516)
Q Consensus 261 l~~d~v~i 268 (516)
++++.+.+
T Consensus 155 ~G~~~i~l 162 (268)
T cd07940 155 AGATTINI 162 (268)
T ss_pred cCCCEEEE
Confidence 88886643
No 184
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=78.88 E-value=83 Score=32.37 Aligned_cols=123 Identities=10% Similarity=0.119 Sum_probs=66.9
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-e--cC
Q 010162 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-M--TN 171 (516)
Q Consensus 95 FC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~--~~ 171 (516)
+..+|... -|.++..++...+..+.+.|+++|..+.+|...-+......-.+|++-+.+ ... ..+.+. | .|
T Consensus 83 ~~~i~Hlt--cr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~-~~~---~~i~va~yPegh 156 (296)
T PRK09432 83 LEAAPHLT--CIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKS-VAD---FDISVAAYPEVH 156 (296)
T ss_pred CCeeeecc--cCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHH-hCC---CccceeeCCCCC
Confidence 44455442 245688999999999999999999988878665332212223456654432 221 222222 1 23
Q ss_pred Cc--chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC--CEEEEEEE
Q 010162 172 PP--FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG--MQIATDII 240 (516)
Q Consensus 172 P~--~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG--i~i~td~I 240 (516)
|. ....++..|.+-.+.+ ..++ ...+ -|+.+.+.+.++.+++. | +.+...+|
T Consensus 157 p~~~~~~~dl~~Lk~K~~aG--A~~~-----------iTQ~--~Fd~~~~~~f~~~~~~~--Gi~vPIi~GI~ 212 (296)
T PRK09432 157 PEAKSAQADLINLKRKVDAG--ANRA-----------ITQF--FFDVESYLRFRDRCVSA--GIDVEIVPGIL 212 (296)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CCee-----------eccc--ccchHHHHHHHHHHHHc--CCCCCEEeecc
Confidence 32 2223333333322233 2111 1111 26778888888888887 5 34555554
No 185
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.94 E-value=1.2e+02 Score=33.31 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHhCCCCCC-ceEEE----ee-cCCcchHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGS-TMLRI----GM-TNPPFILEHL 179 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y-g~d~~~~l~eLL~~I~~~i~~~~~-~~iri----~~-~~P~~i~~~l 179 (516)
..+.++.+.-++.|.+.|+..|-+.|+-.+.. .+-....-.+.++.+.+..+.... .+.|. ++ ..|+++-+.+
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 46789999999999999999998865433210 010112345677777654432100 01121 11 1344444443
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQTVNL 257 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~--IvGfPGETeedf~etl~f 257 (516)
.+ ...+++ +..+++.. +.|| .+.+...++.+++. |..+...+ .++ |-.|.+-+.+.++.
T Consensus 101 v~--~A~~~G--vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~-p~~t~e~~~~~a~~ 161 (467)
T PRK14041 101 VK--KVAEYG--LDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVS-PVHTLEYYLEFARE 161 (467)
T ss_pred HH--HHHHCC--cCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccC-CCCCHHHHHHHHHH
Confidence 22 223333 55666554 4454 24456677777777 66555333 234 66677777777777
Q ss_pred HHhcCCCeEE
Q 010162 258 IKEYKFPQVH 267 (516)
Q Consensus 258 i~el~~d~v~ 267 (516)
+.+.+.+.+.
T Consensus 162 l~~~Gad~I~ 171 (467)
T PRK14041 162 LVDMGVDSIC 171 (467)
T ss_pred HHHcCCCEEE
Confidence 7777766544
No 186
>PRK09389 (R)-citramalate synthase; Provisional
Probab=75.52 E-value=1.1e+02 Score=33.77 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~ 184 (516)
.+.+.++.++-++.|.+.|++.|-... +..+.+ -.+.++.+.+. .. ..++. +.... .+. +..
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~-~~----~~~i~a~~r~~--~~d---i~~ 81 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDE-GL----NAEICSFARAV--KVD---IDA 81 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhc-CC----CcEEEeecccC--HHH---HHH
Confidence 578999999999999999999998743 222221 24556666532 11 11222 22221 222 223
Q ss_pred HHcCCCCccEEEecccCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk-~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
....+ .+.+++.+ +.||..++ .+++. ...+.+.+.++.+++. |+.+..+..-+. .-+++-+.+.++.+.+.
T Consensus 82 a~~~g--~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALECD--VDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHhCC--cCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 33333 66788887 55665444 44442 2456667777888888 888887777653 44567777888888898
Q ss_pred CCCeEEE
Q 010162 262 KFPQVHI 268 (516)
Q Consensus 262 ~~d~v~i 268 (516)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 9887654
No 187
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.74 E-value=1.6e+02 Score=33.49 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCC-ceEE----EeecC-CcchHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGS-TMLR----IGMTN-PPFILEH 178 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~--yg~d~~~~l~eLL~~I~~~i~~~~~-~~ir----i~~~~-P~~i~~~ 178 (516)
..+.++.+.-++.+.+.|+..|-+.|+-++. +.. ....--+.|+.+.+.++.... ..+| ++|.+ |+++-+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~-~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRF-LGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccc-cCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4567888888888888899999887642222 111 112235666777665542100 1122 33333 4444333
Q ss_pred HHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE-cCCCCCHHHHHHHHHH
Q 010162 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNL 257 (516)
Q Consensus 179 l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~Iv-GfPGETeedf~etl~f 257 (516)
..+ ...+++ ...+++.. +.|+ .+.+..+++.++++ |..+...+-+ +-|-.|.+.+.+.++.
T Consensus 102 ~v~--~a~~~G--id~~rifd-~lnd-----------~~~~~~ai~~ak~~--G~~~~~~i~yt~~p~~~~~~~~~~a~~ 163 (593)
T PRK14040 102 FVE--RAVKNG--MDVFRVFD-AMND-----------PRNLETALKAVRKV--GAHAQGTLSYTTSPVHTLQTWVDLAKQ 163 (593)
T ss_pred HHH--HHHhcC--CCEEEEee-eCCc-----------HHHHHHHHHHHHHc--CCeEEEEEEEeeCCccCHHHHHHHHHH
Confidence 322 223333 55566553 3332 23455566666665 5543222211 2355555555555555
Q ss_pred HHhcCCCeE
Q 010162 258 IKEYKFPQV 266 (516)
Q Consensus 258 i~el~~d~v 266 (516)
+.+.+.+.+
T Consensus 164 l~~~Gad~i 172 (593)
T PRK14040 164 LEDMGVDSL 172 (593)
T ss_pred HHHcCCCEE
Confidence 555555433
No 188
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.48 E-value=54 Score=34.37 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC------------------CceEEE
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG------------------STMLRI 167 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~------------------~~~iri 167 (516)
...+.+.-++++++|.+.|..-+.+.-+|.- -++.+..|.+..+.+- ...+|
T Consensus 29 ~T~Dv~atv~QI~~L~~aGceiVRvavp~~~---------~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiR- 98 (346)
T TIGR00612 29 DTIDIDSTVAQIRALEEAGCDIVRVTVPDRE---------SAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVR- 98 (346)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEE-
Confidence 3568999999999999999887777654322 1223333333222211 22344
Q ss_pred eecCCcch--HHHHHHHHHHHcCCCCccEEEecccCCCH--HHHHhcCCCC---CHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 168 GMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSD--AVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 168 ~~~~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQSgsd--~vLk~MnR~~---t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
+||.++ .+.+.++.+..+.... -+-||+-|||= +++++.+.+. -++..++-++.+.+. |+. |++
T Consensus 99 --INPGNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~--~F~---div 169 (346)
T TIGR00612 99 --INPGNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKL--GFR---NVV 169 (346)
T ss_pred --ECCCCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHC--CCC---cEE
Confidence 356655 4455555554544432 47778877764 4455443221 134455566666676 654 777
Q ss_pred EcCCCCCHHHHHHHHHHHHhc
Q 010162 241 CGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el 261 (516)
+-+-.-+.....+..+++.+.
T Consensus 170 iS~KsSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 170 LSMKASDVAETVAAYRLLAER 190 (346)
T ss_pred EEEEcCCHHHHHHHHHHHHhh
Confidence 777666666666666666544
No 189
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.79 E-value=28 Score=35.13 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=77.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 105 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 105 ~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
...++.+.++++++.+.+.|..-|-+-++ .-..+....+..+++.+.+..+ ..+.+.+.+|..+..-+ +
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~---~~~~eE~~r~~~~v~~l~~~~~----~plsIDT~~~~v~eaaL----~ 87 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAG---TAVEEEPETMEWLVETVQEVVD----VPLCIDSPNPAAIEAGL----K 87 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCC---CCchhHHHHHHHHHHHHHHhCC----CCEEEeCCCHHHHHHHH----H
Confidence 45678999999999999999987766553 2122222235666666654322 34566655554322222 1
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcC-------------CC--CC----HHHHHHHHHHHHHhCCCC---EEEEEEEEc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMN-------------RE--YT----LSDFRTVVDTLIELVPGM---QIATDIICG 242 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~Mn-------------R~--~t----~e~~~~~I~~lr~~~pGi---~i~td~IvG 242 (516)
......+.+.++..-+ -.++++..+. ++ .+ .+.+.+.++.+.++ |+ .+-.|=.+|
T Consensus 88 ~~~G~~iINsIs~~~~-~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi~ 164 (261)
T PRK07535 88 VAKGPPLINSVSAEGE-KLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLVL 164 (261)
T ss_pred hCCCCCEEEeCCCCCc-cCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCCC
Confidence 1001112222221110 1233322111 11 12 35556677778888 88 688888888
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 010162 243 FPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 243 fPGETeedf~etl~fi~el 261 (516)
+.|-+.+...++++.++.+
T Consensus 165 ~~~~~~~~~~~~l~~i~~l 183 (261)
T PRK07535 165 PLSAAQDAGPEVLETIRRI 183 (261)
T ss_pred cccCChHHHHHHHHHHHHH
Confidence 7777777666666665544
No 190
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.87 E-value=1.1e+02 Score=30.69 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-HHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-LEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~-----n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i-~~~l 179 (516)
...+.++.++-++.|.+.|+..|-+... ..+.++.. ...-.+.++.+.+..+. ..+... +.+... .+.
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~---~~~~~~-~~~~~~~~~~- 90 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQ---AKLGVL-LLPGIGTVDD- 90 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccC---CEEEEE-ecCCccCHHH-
Confidence 4568999999999999999999887621 11111111 11234666777554432 222222 112111 122
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~ 259 (516)
+...... ++..+.+.+ +.|+ ...+.++++.+++. |+.+..+++-.. .-+++.+.+.++.+.
T Consensus 91 --i~~a~~~--g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~ 151 (263)
T cd07943 91 --LKMAADL--GVDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSH-MASPEELAEQAKLME 151 (263)
T ss_pred --HHHHHHc--CCCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHH
Confidence 3232333 366777654 3333 24678899999999 999888887665 367889999999999
Q ss_pred hcCCCeEE
Q 010162 260 EYKFPQVH 267 (516)
Q Consensus 260 el~~d~v~ 267 (516)
+.+.+.+.
T Consensus 152 ~~G~d~i~ 159 (263)
T cd07943 152 SYGADCVY 159 (263)
T ss_pred HcCCCEEE
Confidence 99988764
No 191
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=72.41 E-value=1.2e+02 Score=33.50 Aligned_cols=145 Identities=8% Similarity=-0.091 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
.+.+.++-++-++.|.+.|++.|-.. ++..+.. -.+.++++.+.... ....-+.-.++.+++..+ ..+
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG---~p~~s~~----d~e~v~~i~~~~~~--~~i~al~r~~~~did~a~---~al 85 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAG---FPVSSPG----DFEAVQRIARTVKN--PRVCGLARCVEKDIDAAA---EAL 85 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEE---CCCCCHH----HHHHHHHHHHhCCC--CEEEEEcCCCHHhHHHHH---Hhc
Confidence 56889999999999999999999753 2222221 13445666543331 111112212333332222 111
Q ss_pred HcCCCCccEEEecccCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 263 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~ 263 (516)
.. ...+.+++-+=+-+-.+.+.+++. ...+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.+.
T Consensus 86 ~~--~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r-~d~~~l~~~~~~~~~~Ga 160 (494)
T TIGR00973 86 KP--AEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGR-TEIPFLARIVEAAINAGA 160 (494)
T ss_pred cc--cCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCC-CCHHHHHHHHHHHHHcCC
Confidence 11 124667776644333444455543 2345566788888888 7654444443332 235666667777777787
Q ss_pred CeEE
Q 010162 264 PQVH 267 (516)
Q Consensus 264 d~v~ 267 (516)
+.+.
T Consensus 161 ~~i~ 164 (494)
T TIGR00973 161 TTIN 164 (494)
T ss_pred CEEE
Confidence 7554
No 192
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=69.04 E-value=34 Score=37.10 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=40.5
Q ss_pred EEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeeccccC
Q 010162 315 ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 376 (516)
Q Consensus 315 ~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~~~~ 376 (516)
+++-|+....+|. -+||..+ ..|+|+ ...+|+.|.|+|++.......|++++......
T Consensus 16 ~~l~i~~l~~~G~-Gv~~~~~-~~vfV~--~~lPGe~v~v~i~~~~~~~~~~~~~~vl~~sp 73 (443)
T PRK13168 16 ITVTIESLDHDGR-GVARHNG-KTVFIE--GALPGERVEVQVTEDKKQYARAKVVRILKPSP 73 (443)
T ss_pred EEEEEEEcCCCCc-eEEEECC-EEEEeC--CCCCCCEEEEEEEEecCcEEEEEEEEEecCCc
Confidence 4566776654453 4677654 566664 46799999999999877788898887655433
No 193
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=68.28 E-value=1e+02 Score=31.01 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=71.2
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC------CcCCCHHHHHHHHHHhCCCCCCceEEEe
Q 010162 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVAELPPDGSTMLRIG 168 (516)
Q Consensus 95 FC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~------d~~~~l~eLL~~I~~~i~~~~~~~iri~ 168 (516)
+-.+++... |.++..++..++..+.+.|+++|.++.+|....+. ....+-.+|++.+...... ...+...
T Consensus 59 ~~~i~Hlt~--r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~--~~~igva 134 (274)
T cd00537 59 IEPIPHLTC--RDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGG--GFSIGVA 134 (274)
T ss_pred CCeeeeccc--CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC--CCccccc
Confidence 444554433 44556999999999999999999999777776542 1123466777777542111 1111111
Q ss_pred ---ecCCcc--hHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 010162 169 ---MTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243 (516)
Q Consensus 169 ---~~~P~~--i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf 243 (516)
..||.. ...++..|.+-.++| +.++- -| =-|+.+.+.+.++.+++. |+ ..-+|.|+
T Consensus 135 ~yPe~hp~~~~~~~~~~~L~~Ki~aG--A~f~i--TQ-----------~~fd~~~~~~~~~~~~~~--gi--~vPIi~GI 195 (274)
T cd00537 135 AYPEGHPEAPSLEEDIKRLKRKVDAG--ADFII--TQ-----------LFFDNDAFLRFVDRCRAA--GI--TVPIIPGI 195 (274)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHHCC--CCEEe--ec-----------ccccHHHHHHHHHHHHHc--CC--CCCEEeec
Confidence 123332 222333333323333 23321 01 125778888888888888 65 34566676
Q ss_pred CCC
Q 010162 244 PGE 246 (516)
Q Consensus 244 PGE 246 (516)
..=
T Consensus 196 ~p~ 198 (274)
T cd00537 196 MPL 198 (274)
T ss_pred ccc
Confidence 543
No 194
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=67.24 E-value=1.3e+02 Score=31.72 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee---------------c
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---------------T 170 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~---------------~ 170 (516)
...+++.-+++|+.|.+.|..-+.++-++.- -++.+.+|.+.++.+-...++|.| +
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e---------~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RI 101 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDME---------AAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRI 101 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCHH---------HHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEE
Confidence 4558999999999999999887777654221 244555555444332222222221 3
Q ss_pred CCcch--HHHHHHHHHHHcCCCCccEEEecccCCC--HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCEEEEEEEEc
Q 010162 171 NPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTLSDF----RTVVDTLIELVPGMQIATDIICG 242 (516)
Q Consensus 171 ~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQSgs--d~vLk~MnR~~t~e~~----~~~I~~lr~~~pGi~i~td~IvG 242 (516)
||.++ .+.+.++.+.++... .-+-||+-+|| .++++++..+ +.|.+ ++-++.+.+. |+. +|++-
T Consensus 102 NPGNig~~~~v~~vVe~Ak~~g--~piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i~iS 173 (361)
T COG0821 102 NPGNIGFKDRVREVVEAAKDKG--IPIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DIKVS 173 (361)
T ss_pred CCcccCcHHHHHHHHHHHHHcC--CCEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cEEEE
Confidence 56555 334555555444332 23666766655 5677777655 44332 3334444455 544 77777
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 010162 243 FPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 243 fPGETeedf~etl~fi~el 261 (516)
.-.-+..+..+..+.+.+.
T Consensus 174 ~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 174 VKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEcCCHHHHHHHHHHHHHh
Confidence 7777777766666666544
No 195
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.16 E-value=2.1e+02 Score=31.89 Aligned_cols=148 Identities=16% Similarity=0.027 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch---HHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI---LEHLKEI 182 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i---~~~l~eL 182 (516)
.+.+.++.++-++.|.+.|++.|-..- +..+.+ -.+.++++.+. .........+......++ .+.- +
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~---p~as~~----d~~~~~~i~~~-~l~~~~i~~~~~~~~~~i~~~~d~~--~ 91 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK----DTEFFKRAKEL-KLKHAKLAAFGSTRRAGVSAEEDPN--L 91 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC---CcCChh----HHHHHHHHHHh-CCCCcEEEEEeeccccCCCcccHHH--H
Confidence 577899999999999999999998632 222221 23445666431 101111222222222222 1111 2
Q ss_pred HHHHcCCCCccEEEecccCCCHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHH
Q 010162 183 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLI 258 (516)
Q Consensus 183 ~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR--~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfP--GETeedf~etl~fi 258 (516)
..+...+ ...+++.+-+.+-.+.+.+|+ ....+.+.+.++.+++. |..+..+.+.-+. -.+.+-+.+.++.+
T Consensus 92 e~~~~~g--~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLDAG--TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHhCC--CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 2333333 677888774433333455654 33567777888889998 8766543331111 23345556677777
Q ss_pred HhcCCCeEE
Q 010162 259 KEYKFPQVH 267 (516)
Q Consensus 259 ~el~~d~v~ 267 (516)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 788888765
No 196
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=66.71 E-value=1.1e+02 Score=32.51 Aligned_cols=137 Identities=23% Similarity=0.323 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CCceEEE
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 167 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~------------------~~~~iri 167 (516)
...+.+.-+++|+.|.+.|..-+.+.-+|.- -++.+..|.+..+.+ +...+|+
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~---------~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDME---------AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHH---------HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 4678999999999999999888877654322 123333333332221 1234454
Q ss_pred eecCCcch---HHHHHHHHHHHcCCCCccEEEecccCCC--HHHHHhcCCCC---CHHHHHHHHHHHHHhCCCCEEEEEE
Q 010162 168 GMTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDI 239 (516)
Q Consensus 168 ~~~~P~~i---~~~l~eL~~l~~~~~~~~~i~iGlQSgs--d~vLk~MnR~~---t~e~~~~~I~~lr~~~pGi~i~td~ 239 (516)
||.++ .+.+.++.+..+.... -+-||+-||| .+++++.+.+. -++..++-++.+.+. |+ .||
T Consensus 108 ---NPGNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~--~f---~~i 177 (360)
T PRK00366 108 ---NPGNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEEL--GF---DDI 177 (360)
T ss_pred ---CCCCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHC--CC---CcE
Confidence 56555 4466666555554433 4777777766 45666654322 124445556666676 65 567
Q ss_pred EEcCCCCCHHHHHHHHHHHHhc
Q 010162 240 ICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 240 IvGfPGETeedf~etl~fi~el 261 (516)
++-+-.-+.....+..+.+.+.
T Consensus 178 viS~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 178 KISVKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred EEEEEcCCHHHHHHHHHHHHhc
Confidence 7777666666666666666544
No 197
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=65.84 E-value=1.7e+02 Score=32.59 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC----CceEEEeecCCcchHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG----STMLRIGMTNPPFILEHLKE 181 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~----~~~iri~~~~P~~i~~~l~e 181 (516)
...+.++-++-++.|.+.|++.|-..- +..+.+ ..+.++++.+...... .....+....+.. .+.++.
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~~----e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~-~~dId~ 172 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSEE----EFEAVKTIAKTVGNEVDEETGYVPVICGIARCK-KRDIEA 172 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH----HHHHHHHHHHhcccccccccccceEEeeecccC-HhhHHH
Confidence 577999999999999999999887632 333321 2444666654321000 0011222111111 112211
Q ss_pred HHHHHcCCCCccEEEecccCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH---HHHHH
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED---FNQTV 255 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeed---f~etl 255 (516)
..+... ....+.+++-+ +.||..+ +.+++. ...+.+.+.++.+++. |.. .+.+|.+..+..| +.+.+
T Consensus 173 a~~a~~-~a~~~~V~i~i-~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~~ 245 (503)
T PLN03228 173 AWEALK-YAKRPRILAFT-STSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKIL 245 (503)
T ss_pred HHHhhc-ccCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHHH
Confidence 111111 11245677665 3455444 455543 3556677788888888 753 3566776655443 35555
Q ss_pred HHHHhcCCCeEEE
Q 010162 256 NLIKEYKFPQVHI 268 (516)
Q Consensus 256 ~fi~el~~d~v~i 268 (516)
+.+.+.+.+.+.+
T Consensus 246 ~~a~~~Gad~I~l 258 (503)
T PLN03228 246 GEAIKAGATSVGI 258 (503)
T ss_pred HHHHhcCCCEEEE
Confidence 5666677776543
No 198
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=65.67 E-value=2.3e+02 Score=31.70 Aligned_cols=151 Identities=12% Similarity=0.047 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-CCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~-~P~~i~~~l~eL~~ 184 (516)
.+.+.++-++-++.|.+.|+++|-.. ++..+.. -.+.++++.+. ..+.....-+... .++...+....+.+
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G---~p~~s~~----d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGG---WPGANPK----DVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCChH----HHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHHH
Confidence 57899999999999999999999863 2222221 24455655431 1111111122212 22211011111233
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEEE---EEEEcCCCCCHHHHHHHHHHHH
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIAT---DIICGFPGETDEDFNQTVNLIK 259 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~--~t~e~~~~~I~~lr~~~pGi~i~t---d~IvGfPGETeedf~etl~fi~ 259 (516)
+...+ .+.+|+-+=+-+-.+.+.+++. ...+.+.+.++.+++. |..+.. +|.-|+. -+++.+.+.++.+.
T Consensus 90 ~~~~~--~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 90 LIKAE--TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLATAQ 164 (526)
T ss_pred HhcCC--CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHHHH
Confidence 33333 5677777644344444456643 3455666778899988 776543 3323442 35677778888888
Q ss_pred hcCCCeEEEE
Q 010162 260 EYKFPQVHIS 269 (516)
Q Consensus 260 el~~d~v~if 269 (516)
+.+.+.+.+-
T Consensus 165 ~aGad~i~i~ 174 (526)
T TIGR00977 165 QAGADWLVLC 174 (526)
T ss_pred hCCCCeEEEe
Confidence 8888877654
No 199
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=65.38 E-value=1.5e+02 Score=29.36 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 191 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~ 191 (516)
+-++-++.+.+.|+++++++|-|.. .|.+ . ..++++++.+... ..+.++-.- .. .+. +..++..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~--~-n~~~i~~i~~~~~----~pv~vgGGi-rs-~ed---v~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRG--S-NRELLAEVVGKLD----VKVELSGGI-RD-DES---LEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCC--c-cHHHHHHHHHHcC----CCEEEcCCC-CC-HHH---HHHHHHCC--
Confidence 4555666777899999999997743 3432 2 3588888877543 223343110 01 122 33334344
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE---EEcCCC--CCHHHHHHHHHHHHhcCCCeE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI---ICGFPG--ETDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~---IvGfPG--ETeedf~etl~fi~el~~d~v 266 (516)
+.++.+|-.... +++-+.++++.+.+. +.+..|+ -+-..| ++..+..+.++.+.+.+++.+
T Consensus 98 a~kvviGs~~l~-----------~p~l~~~i~~~~~~~---i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~i 163 (241)
T PRK14024 98 CARVNIGTAALE-----------NPEWCARVIAEHGDR---VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRY 163 (241)
T ss_pred CCEEEECchHhC-----------CHHHHHHHHHHhhhh---EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEE
Confidence 667777754432 234445555555442 3444444 121123 344455666677778888877
Q ss_pred EEEEee
Q 010162 267 HISQFY 272 (516)
Q Consensus 267 ~if~~s 272 (516)
-++.-+
T Consensus 164 iv~~~~ 169 (241)
T PRK14024 164 VVTDVT 169 (241)
T ss_pred EEEeec
Confidence 666533
No 200
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=65.10 E-value=1.2e+02 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeec
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSE 133 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~ 133 (516)
+..+.+.+++.++.+.+.|..-|-+.+.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~ 46 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGE 46 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4468999999999999999988877654
No 201
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=64.93 E-value=2.5e+02 Score=31.89 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeec
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSE 133 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~ 133 (516)
..+.++.+.-+..|.+.|+..|-+.|+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~gg 48 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGG 48 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 356788888888888889999888764
No 202
>PRK08005 epimerase; Validated
Probab=64.39 E-value=1.5e+02 Score=29.04 Aligned_cols=136 Identities=7% Similarity=0.092 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-++-.+-+|++.+.+.|+..+. +.|++|-.. -..+ .+.++.+.+... ....+.+...+|...-+.+
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN-~tfG---~~~i~~l~~~t~--~~~DvHLMv~~P~~~i~~~----- 77 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSFINN-ITFG---MKTIQAVAQQTR--HPLSFHLMVSSPQRWLPWL----- 77 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-cccC---HHHHHHHHhcCC--CCeEEEeccCCHHHHHHHH-----
Confidence 45677899999999999987765 445444211 0011 455666654322 1256777777776543333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
...+ +.++.+-.|+.. +..+.++.+|+. |+... +-+. |+-..+.++..+. . +|
T Consensus 78 -~~~g--ad~It~H~Ea~~--------------~~~~~l~~Ik~~--G~k~G--lAln-P~Tp~~~i~~~l~---~--vD 130 (210)
T PRK08005 78 -AAIR--PGWIFIHAESVQ--------------NPSEILADIRAI--GAKAG--LALN-PATPLLPYRYLAL---Q--LD 130 (210)
T ss_pred -HHhC--CCEEEEcccCcc--------------CHHHHHHHHHHc--CCcEE--EEEC-CCCCHHHHHHHHH---h--cC
Confidence 2233 678888888642 345688999998 87554 4443 6655566654433 2 35
Q ss_pred eEEEEEeeecCCCccccC
Q 010162 265 QVHISQFYPRPGTPAARM 282 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~~~ 282 (516)
.+- .++..||..-.++
T Consensus 131 ~Vl--vMsV~PGf~GQ~f 146 (210)
T PRK08005 131 ALM--IMTSEPDGRGQQF 146 (210)
T ss_pred EEE--EEEecCCCcccee
Confidence 444 4567788765544
No 203
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.76 E-value=1.6e+02 Score=29.22 Aligned_cols=151 Identities=7% Similarity=0.105 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-+.-.+-+|++.+.+.|+..+. +.|++|-.. -..+ ...++.+.+.+ ...+.+...+|...-+.+
T Consensus 21 ~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN-itfG---p~~i~~i~~~~----~~DvHLMv~~P~~~i~~~----- 87 (228)
T PRK08091 21 ASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF-FTVG---AIAIKQFPTHC----FKDVHLMVRDQFEVAKAC----- 87 (228)
T ss_pred hcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-cccC---HHHHHHhCCCC----CEEEEeccCCHHHHHHHH-----
Confidence 44678899999999999987765 445433211 0011 34555553222 246677767775443333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
.+++ +..+.+-.|+. .+..+.++.+|+. |+.+.+.+.+. |+-..++++..++. +|
T Consensus 88 -~~aG--ad~It~H~Ea~--------------~~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~~-----vD 142 (228)
T PRK08091 88 -VAAG--ADIVTLQVEQT--------------HDLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLDQ-----ID 142 (228)
T ss_pred -HHhC--CCEEEEcccCc--------------ccHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHhh-----cC
Confidence 2333 67888888874 2356788999999 88677777776 77666776555443 45
Q ss_pred eEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHH
Q 010162 265 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 301 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~ 301 (516)
.+-+ ++..||---..+- ....++.++++++.
T Consensus 143 ~VLi--MtV~PGfgGQ~f~----~~~l~KI~~lr~~~ 173 (228)
T PRK08091 143 LIQI--LTLDPRTGTKAPS----DLILDRVIQVENRL 173 (228)
T ss_pred EEEE--EEECCCCCCcccc----HHHHHHHHHHHHHH
Confidence 5544 4566775433331 22334444555543
No 204
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.76 E-value=12 Score=37.62 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-----CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~-----~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~ 180 (516)
+..+++.+++.++.+.+.|..-|-+.++.+....... ...+..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~aaL- 93 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAEAAL- 93 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHHHHH-
Confidence 4568999999999999999988877664332211100 013555566654322 234666665554332222
Q ss_pred HHHHHHcCC-CCccEEEecccCCCHHHHHhcC-----------CC------------CC----HHHHHHHHHHHHHhCCC
Q 010162 181 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMN-----------RE------------YT----LSDFRTVVDTLIELVPG 232 (516)
Q Consensus 181 eL~~l~~~~-~~~~~i~iGlQSgsd~vLk~Mn-----------R~------------~t----~e~~~~~I~~lr~~~pG 232 (516)
+.+ .+.+ ++..+..++++++.+. ++ .. .+.+.+.++.+.++ |
T Consensus 94 ------~~g~~iIN--dis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--G 163 (258)
T cd00423 94 ------KAGADIIN--DVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA--G 163 (258)
T ss_pred ------HhCCCEEE--eCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--C
Confidence 111 0111 1222222233332111 11 11 35566777778887 7
Q ss_pred C---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 233 M---QIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 233 i---~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+ .+-.|-.+||+. +.++...+++.+..+
T Consensus 164 i~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 164 IPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 5 578898999877 555444555555444
No 205
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=63.62 E-value=1.1e+02 Score=31.50 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHH--H-HH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE--H-LK 180 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~--~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~--~-l~ 180 (516)
+-++..+|.+.++.+.+.|+++|.++.+|....+.... ..-.+|++-+..... +.+.+-.. .+|..-.+ . ..
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~~ 163 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVKE 163 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhHH
Confidence 45589999999999999999999999888852111111 245677776653221 11233332 45543311 1 11
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 243 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf 243 (516)
++..+.+. +++|-|.++..+- ++.+.+.+..++++++ |+ ..-++.|+
T Consensus 164 d~~~lkrK----------v~aGAd~~iTQ~~--fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 164 DIKRLKRK----------VDAGADFFITQFF--FDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHHH----------HhcchHHHHHHHc--cCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 12111110 2355666666553 7889999999999998 54 33344443
No 206
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=63.09 E-value=1.4e+02 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 206 VLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 206 vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
.+++++.+++.++..++++.+|+..++
T Consensus 68 ~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 68 HLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 356778889999999999999977444
No 207
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=62.86 E-value=2.7e+02 Score=31.57 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCC
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg-~d~~~~l~eLL~~I~~~i~ 158 (516)
..+.++.+.-++.|.+.|+..|-+.|+-++.-. +-....-.+.++.+.+..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~ 69 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP 69 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC
Confidence 467888898999999999999988754332210 0011223566666655443
No 208
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=62.11 E-value=70 Score=31.00 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-+.-.+.+|++.+.+.|+..+. +.|+++-. ... --.+.++.|.+.. .-...+.+...+|...-+.+.+.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvp---n~~-~g~~~i~~i~~~~--~~~~DvHLMv~~P~~~i~~~~~~-- 79 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIMDGHFVP---NLT-FGPDIIKAIRKIT--DLPLDVHLMVENPERYIEEFAEA-- 79 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS---SB--B-HHHHHHHHTTS--SSEEEEEEESSSGGGHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeecccccCC---ccc-CCHHHHHHHhhcC--CCcEEEEeeeccHHHHHHHHHhc--
Confidence 34566788999999999888755 55644422 111 1256777776532 12356788778887655555322
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
+ ..++.+.+|+.+ +..+.++.+|++ |+....-+- |+...+.++. ++. .+|
T Consensus 80 ----g--~~~i~~H~E~~~--------------~~~~~i~~ik~~--g~k~Gialn---P~T~~~~~~~---~l~--~vD 129 (201)
T PF00834_consen 80 ----G--ADYITFHAEATE--------------DPKETIKYIKEA--GIKAGIALN---PETPVEELEP---YLD--QVD 129 (201)
T ss_dssp ----T---SEEEEEGGGTT--------------THHHHHHHHHHT--TSEEEEEE----TTS-GGGGTT---TGC--CSS
T ss_pred ----C--CCEEEEcccchh--------------CHHHHHHHHHHh--CCCEEEEEE---CCCCchHHHH---Hhh--hcC
Confidence 2 568888888654 345688999999 887765553 5544444432 222 356
Q ss_pred eEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHH
Q 010162 265 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 302 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~ 302 (516)
.+.+ ++..||..-..+ .+...+|.++++++..
T Consensus 130 ~Vlv--MsV~PG~~Gq~f----~~~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 130 MVLV--MSVEPGFGGQKF----IPEVLEKIRELRKLIP 161 (201)
T ss_dssp EEEE--ESS-TTTSSB------HGGHHHHHHHHHHHHH
T ss_pred EEEE--EEecCCCCcccc----cHHHHHHHHHHHHHHH
Confidence 6654 456678654443 2223344555555443
No 209
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=61.97 E-value=1.8e+02 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCC
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDT 135 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~ 135 (516)
+..+++.++++++.+.+.|..=|-+.++-+
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeST 62 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGEST 62 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCC
Confidence 445899999999999999998887766533
No 210
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=60.28 E-value=1.7e+02 Score=29.49 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=71.7
Q ss_pred cCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-C---cCCCHHHHHHHHHHhCCCCCCceEEEee
Q 010162 94 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-D---IGVNLPILLNAIVAELPPDGSTMLRIGM 169 (516)
Q Consensus 94 sFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~-d---~~~~l~eLL~~I~~~i~~~~~~~iri~~ 169 (516)
.+..+++... |.++..++...+..+.+.|++.|..+.+|....+. . ....-.+|++.+.+..+ .+.++.
T Consensus 58 g~~~i~Hlt~--r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~-----~f~ig~ 130 (272)
T TIGR00676 58 GIPTVPHLTC--IGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG-----DFDIGV 130 (272)
T ss_pred CCCeeEEeee--cCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-----CeeEEE
Confidence 3455555432 45688999999999999999999966556664432 1 11245677777754322 234442
Q ss_pred -cCCc----c--hHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 010162 170 -TNPP----F--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 242 (516)
Q Consensus 170 -~~P~----~--i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvG 242 (516)
.+|. . ...++..|.+-.+.+ +.++- .. =-|+.+.+.+.++.+++. |+.+ =++.|
T Consensus 131 a~~Peghp~~~~~~~~~~~L~~K~~aG--A~f~i-----------TQ--~~fd~~~~~~~~~~~~~~--gi~~--PIi~G 191 (272)
T TIGR00676 131 AAYPEKHPEAPNLEEDIENLKRKVDAG--ADYAI-----------TQ--LFFDNDDYYRFVDRCRAA--GIDV--PIIPG 191 (272)
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHcC--CCeEe-----------ec--cccCHHHHHHHHHHHHHc--CCCC--CEecc
Confidence 3333 2 223333343323333 22221 11 126778888899999888 6543 46777
Q ss_pred CCC
Q 010162 243 FPG 245 (516)
Q Consensus 243 fPG 245 (516)
+..
T Consensus 192 i~p 194 (272)
T TIGR00676 192 IMP 194 (272)
T ss_pred cCC
Confidence 643
No 211
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=59.52 E-value=6 Score=34.27 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCcEEEEccccCcchhhhhCCcce--EEcCCChhHHHHHHH
Q 010162 12 KKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVE 50 (516)
Q Consensus 12 ~~~VVV~GC~a~~~~~~~~~p~vD--vvG~~~~~~i~~ll~ 50 (516)
+.+|++||.+++..++. +.+| ++|+++. .++++++
T Consensus 80 ~~~ivvGG~~~t~~~~~---~~~d~~~~Ge~e~-~~~~l~~ 116 (125)
T cd02065 80 DIPVVVGGAHPTADPEE---PKVDAVVIGEGEY-AGPALLE 116 (125)
T ss_pred CCeEEEeCCcCCccccc---cccceeeeCCeEE-Eccccch
Confidence 67899999999987654 6788 4787774 6666653
No 212
>PRK15452 putative protease; Provisional
Probab=58.72 E-value=62 Score=35.33 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=56.4
Q ss_pred HHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC-CHHHHHHHHHHHHh
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIKE 260 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGE-Teedf~etl~fi~e 260 (516)
+.++...+ .+.|.+|.++.+-+. -...++.+++.++++.+++. |..+...+= -+|.+ ..+.+.+.++.+.+
T Consensus 16 l~aAi~~G--ADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~n-~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 16 MRYAFAYG--ADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVVN-IAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHCC--CCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEec-CcCCHHHHHHHHHHHHHHHh
Confidence 33444444 789999999988653 24678899999999999998 765433221 23444 33566777777778
Q ss_pred cCCCeEEEEE
Q 010162 261 YKFPQVHISQ 270 (516)
Q Consensus 261 l~~d~v~if~ 270 (516)
+++|.+-+.-
T Consensus 88 ~gvDgvIV~d 97 (443)
T PRK15452 88 MKPDALIMSD 97 (443)
T ss_pred CCCCEEEEcC
Confidence 8899877664
No 213
>PLN02321 2-isopropylmalate synthase
Probab=57.24 E-value=1.9e+02 Score=33.12 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC--CCce-EEE---eecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM-LRI---GMTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~--~~~~-iri---~~~~P~~i~~~l 179 (516)
.+.+.++-++-++.|.+.|++.|-... +..+.+. .+.++.|.+.+... ...+ ..+ +-.+..+++..+
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~D----~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPDD----LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCccH----HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 578999999999999999999998642 2222221 23355554432110 0001 111 112333332222
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH---HHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD---EDFNQ 253 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETe---edf~e 253 (516)
..+... ....+|+-+ +.||--+ +.+++. ...+.+.+.++.+++. |.. ++.++.+..+. +.+.+
T Consensus 176 ---~al~~a--~~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l~~ 244 (632)
T PLN02321 176 ---EAVKHA--KRPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFLYR 244 (632)
T ss_pred ---HHhcCC--CCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHHHH
Confidence 111111 123566666 5566544 455543 2445566777778887 643 45666665443 44555
Q ss_pred HHHHHHhcCCCeEEE
Q 010162 254 TVNLIKEYKFPQVHI 268 (516)
Q Consensus 254 tl~fi~el~~d~v~i 268 (516)
.++.+.+.+.+.+++
T Consensus 245 ~~~~a~~aGa~~I~L 259 (632)
T PLN02321 245 ILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHcCCCEEEe
Confidence 666666677776543
No 214
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=57.11 E-value=1.5e+02 Score=30.42 Aligned_cols=157 Identities=14% Similarity=0.191 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-CceEEEeecCCcchHHH---H---HHH
Q 010162 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH---L---KEI 182 (516)
Q Consensus 110 ~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~-~~~iri~~~~P~~i~~~---l---~eL 182 (516)
.+.|.+.+..+.+.|..-|+|.|++..+|+. ++.+.+..+... ...+.+. .|++..++. . .-+
T Consensus 97 ~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~~---------~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~ 166 (307)
T TIGR01227 97 QHEIAQTAAALLADHRVPVILGGGHSIAYAT---------FAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPF 166 (307)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCcchhHHHH---------HHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHH
Confidence 4555566666777888888888877776653 333433332111 1223332 222211110 0 012
Q ss_pred HHHHcCC--CCccEEEecccCCC--HHHHHhcCCC----CCHHHHHH-----HHHHHHHhC---CCC--EEEEEEE----
Q 010162 183 AEVLRHP--CVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIELV---PGM--QIATDII---- 240 (516)
Q Consensus 183 ~~l~~~~--~~~~~i~iGlQSgs--d~vLk~MnR~----~t~e~~~~-----~I~~lr~~~---pGi--~i~td~I---- 240 (516)
..++..+ ...+.+++|+++.+ ++-.+.+++. ++.+++.+ +.+.++... ..+ .+..|.+
T Consensus 167 ~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~ 246 (307)
T TIGR01227 167 RQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAH 246 (307)
T ss_pred HHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhh
Confidence 2223221 12468999999984 3434433321 23444433 233333321 123 4445555
Q ss_pred ---EcCC---CCCHHHHHHHHHHHHhc-CCCeEEEEEeeecCC
Q 010162 241 ---CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 276 (516)
Q Consensus 241 ---vGfP---GETeedf~etl~fi~el-~~d~v~if~~sp~pG 276 (516)
+|.| |=|..++.+.++.+.+. ++-.+.+.-|+|...
T Consensus 247 aPgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 247 APGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 5566 56888888888887544 566677777887644
No 215
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=57.02 E-value=2.1e+02 Score=28.40 Aligned_cols=128 Identities=12% Similarity=0.189 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 186 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~ 186 (516)
..+.+.|.+-++....-|...+-+.. | ++|++...... ..-+.++..+|..+.+-.
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIAa--------d-----p~LV~~~~~~s----~lPICVSaVep~~f~~aV------- 78 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIAA--------D-----PELVKLAKSLS----NLPICVSAVEPELFVAAV------- 78 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEecC--------C-----HHHHHHHHHhC----CCCeEeecCCHHHHHHHH-------
Confidence 45677777777765555666554332 1 44555443221 134677778876544333
Q ss_pred cCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE
Q 010162 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 187 ~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v 266 (516)
.+| ...+.|| |-+.+-.-+|.++.++++++.+..|+..|++.+..++=.-+|- ++=.+....+.+.+.|.+
T Consensus 79 ~AG--AdliEIG----NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l---d~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 79 KAG--ADLIEIG----NFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPL---DQQVQLAEDLVKAGADII 149 (242)
T ss_pred HhC--CCEEEec----chHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccH---HHHHHHHHHHHHhCCcEE
Confidence 223 5567665 6677777789999999999999999999999888877555553 334455566778888866
Q ss_pred E
Q 010162 267 H 267 (516)
Q Consensus 267 ~ 267 (516)
.
T Consensus 150 Q 150 (242)
T PF04481_consen 150 Q 150 (242)
T ss_pred E
Confidence 5
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.79 E-value=58 Score=35.41 Aligned_cols=57 Identities=25% Similarity=0.446 Sum_probs=42.0
Q ss_pred cEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeecc
Q 010162 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 373 (516)
Q Consensus 313 ~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~ 373 (516)
.+.++.|+....+| .-+|+..+. .|+|+ ...+|+-|.|++++.....-.|++++...
T Consensus 3 ~~~~~~I~~l~~~G-~Gva~~~~~-~vfVp--~alPge~v~~~~~~~~~~~~~a~~~~i~~ 59 (432)
T COG2265 3 QIIEVTIEDLGHNG-EGVARHDGK-VVFVP--GALPGEEVEVRVTKVKKKYAEAKLVKVLE 59 (432)
T ss_pred ceEEEEEEEcCCCC-eeEEEecCc-eEEeC--CCCCCcEEEEEEEeccccceeeEeeeecc
Confidence 45677887765444 346777654 56664 46799999999999999999998887543
No 217
>PLN02540 methylenetetrahydrofolate reductase
Probab=54.59 E-value=3.6e+02 Score=30.50 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHh
Q 010162 92 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAE 156 (516)
Q Consensus 92 ~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~------~~~l~eLL~~I~~~ 156 (516)
.+.+-.+++.. -+.++.+.|.+.+..+.+.|+++|..+.+|...-+... -....+|++.|.+.
T Consensus 56 ~~Gie~i~HLT--Crd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~ 124 (565)
T PLN02540 56 MICVETMMHLT--CTNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSK 124 (565)
T ss_pred hcCCCeeEEee--ecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHh
Confidence 33344444442 25567889999999999999999987766666443211 12367888887654
No 218
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.73 E-value=25 Score=35.41 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=41.8
Q ss_pred ccEEEecccCCC---------HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHH-HHHHHHHHHHhc
Q 010162 192 YSFLHVPVQSGS---------DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE-DFNQTVNLIKEY 261 (516)
Q Consensus 192 ~~~i~iGlQSgs---------d~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETee-df~etl~fi~el 261 (516)
++.|.||+-.-| ....+.++.|.+.+++.+.++.+|+..+++.+. +.++=+-=.. .+++.++.+++.
T Consensus 40 ad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v---lm~Y~N~i~~~G~e~f~~~~~~a 116 (258)
T PRK13111 40 ADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV---LMTYYNPIFQYGVERFAADAAEA 116 (258)
T ss_pred CCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---EEecccHHhhcCHHHHHHHHHHc
Confidence 566666665522 234566778889999999999999553444321 2222111011 333446666666
Q ss_pred CCCeEEE
Q 010162 262 KFPQVHI 268 (516)
Q Consensus 262 ~~d~v~i 268 (516)
+++.+.+
T Consensus 117 GvdGvii 123 (258)
T PRK13111 117 GVDGLII 123 (258)
T ss_pred CCcEEEE
Confidence 6666555
No 219
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=53.29 E-value=1.9e+02 Score=28.97 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=19.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhCCCCE
Q 010162 207 LSAMNREYTLSDFRTVVDTLIELVPGMQ 234 (516)
Q Consensus 207 Lk~MnR~~t~e~~~~~I~~lr~~~pGi~ 234 (516)
.+++..|.+.+++.+.++.+|+..+++.
T Consensus 62 ~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 62 LRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4456678888888888888886533443
No 220
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=52.89 E-value=1.6e+02 Score=27.15 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=49.3
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--------C------HHHHHHHHHH
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVNL 257 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGE--------T------eedf~etl~f 257 (516)
+..|.+......+.... ..+..++.+.++++ |+.+.+--....... + .+.+.+.+++
T Consensus 9 ~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEK-------DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDL 79 (213)
T ss_dssp HSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCcccccc-------hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHH
Confidence 77788777665555433 56778888888898 997554333333222 2 6788999999
Q ss_pred HHhcCCCeEEEEEe
Q 010162 258 IKEYKFPQVHISQF 271 (516)
Q Consensus 258 i~el~~d~v~if~~ 271 (516)
++.++...+.++..
T Consensus 80 a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 80 AKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHTBSEEEEECT
T ss_pred HHHhCCCceeecCc
Confidence 99999988877753
No 221
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.88 E-value=1.9e+02 Score=31.66 Aligned_cols=123 Identities=11% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHc
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~ 187 (516)
.+++.+++-++.+.+.|+..|.|-|- .+ ... +....++++.+.+.++ ..+.+..=+-..+ .+....+...
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt-~G-~l~--P~~v~~lv~alk~~~~----~pi~~H~Hnt~Gl--A~AN~laAie 220 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDM-AG-ILT--PYVAYELVKRIKEAVT----VPLEVHTHATSGI--AEMTYLKAIE 220 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC-CC-CCC--HHHHHHHHHHHHHhcC----CeEEEEecCCCCc--HHHHHHHHHH
Confidence 58899999999999999999998772 22 222 2347788888876653 2233332111111 1111222334
Q ss_pred CCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 188 ~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+| +..|+..+-. |..+...-....++..++.. |+.. |+ +.+.+.+..++++++
T Consensus 221 aG--ad~vD~sv~g--------lg~gaGN~~tE~lv~~L~~~--g~~t------gi---dl~~L~~~~~~~~~~ 273 (448)
T PRK12331 221 AG--ADIIDTAISP--------FAGGTSQPATESMVAALQDL--GYDT------GL---DLEELSEIAEYFNPI 273 (448)
T ss_pred cC--CCEEEeeccc--------cCCCcCCHhHHHHHHHHHhc--CCCC------CC---CHHHHHHHHHHHHHH
Confidence 44 7788877653 44444445556666666654 4332 22 345555555555544
No 222
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.65 E-value=1e+02 Score=32.50 Aligned_cols=74 Identities=8% Similarity=0.086 Sum_probs=52.7
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
...|.+|.+-.+- +.-...++.+++.++++.++++ |..+...+=.-+-.+..+.+.+.++++.++++|.+-+.-
T Consensus 27 ADaVY~G~~~~~~---R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 27 ADAVYIGEKEFGL---RRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred CCEEEeCCccccc---ccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 7789999874333 2222458999999999999999 774433222112345566789999999999999877653
No 223
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.52 E-value=6.3 Score=35.54 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=14.9
Q ss_pred EeCCCCCCCCcCcccCc
Q 010162 84 PINVGCLGACTYCKTKH 100 (516)
Q Consensus 84 ~isrGC~~~CsFC~ip~ 100 (516)
++.+||-++|+||.+..
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 56899999999999864
No 224
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.78 E-value=4.1e+02 Score=29.08 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCc-eEE----Eee-cCCcchHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGST-MLR----IGM-TNPPFILEHL 179 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg-~d~~~~l~eLL~~I~~~i~~~~~~-~ir----i~~-~~P~~i~~~l 179 (516)
..+.++.+.-++.+.+.|+..|-+.|+..+... +-....-.+.++.+.+.++..... +.| .++ -+|+++.+..
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 467899999999999999999999866433211 001122456677776554421000 111 112 2355544443
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE--EEEEcCCCCCHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT--DIICGFPGETDEDFNQTVNL 257 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~t--d~IvGfPGETeedf~etl~f 257 (516)
+....+++ +..+++.. +.|+- ..+.++++.+++. |..+.. .+..+ |--|.+-+.+.++.
T Consensus 102 --v~~A~~~G--vd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~-p~~~~~~~~~~a~~ 162 (448)
T PRK12331 102 --VQKSVENG--IDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTS-PVHTIDYFVKLAKE 162 (448)
T ss_pred --HHHHHHCC--CCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecC-CCCCHHHHHHHHHH
Confidence 22333443 56666654 33442 2467789999998 876543 33334 77788888888888
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+.+.+.+.+-
T Consensus 163 l~~~Gad~I~i~ 174 (448)
T PRK12331 163 MQEMGADSICIK 174 (448)
T ss_pred HHHcCCCEEEEc
Confidence 999998876543
No 225
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=47.04 E-value=3.3e+02 Score=27.74 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=70.7
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC---c---CCCHHHHHHHHHHhCCCCCCceEEEe
Q 010162 95 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---I---GVNLPILLNAIVAELPPDGSTMLRIG 168 (516)
Q Consensus 95 FC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d---~---~~~l~eLL~~I~~~i~~~~~~~iri~ 168 (516)
+..+++..- |.++.+++.+.+..+.+.|+++|..+.+|....+.. . -....+|++.+.+..+ ..+.++
T Consensus 60 ~~~i~Hltc--r~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~----~~f~ig 133 (281)
T TIGR00677 60 VETCMHLTC--TNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYG----DYFCIG 133 (281)
T ss_pred CCeeEEecc--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCC----CceEEE
Confidence 344444422 444567888888899899999998777677544321 0 1235677777654322 123343
Q ss_pred e-cCCc------chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 010162 169 M-TNPP------FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 241 (516)
Q Consensus 169 ~-~~P~------~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~Iv 241 (516)
. .+|. ....++..|.+-.+.| +.++- ..+ -|+.+.+.+.++.+++. |+.+ =+|.
T Consensus 134 va~~Pe~Hp~~~~~~~d~~~L~~Ki~aG--A~f~i-----------TQ~--~Fd~~~~~~f~~~~~~~--gi~~--PIi~ 194 (281)
T TIGR00677 134 VAGYPEGHPEAESVELDLKYLKEKVDAG--ADFII-----------TQL--FYDVDNFLKFVNDCRAI--GIDC--PIVP 194 (281)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHcC--CCEee-----------ccc--eecHHHHHHHHHHHHHc--CCCC--CEEe
Confidence 2 3442 2222233333322233 33321 111 26778899999999988 6543 3466
Q ss_pred cC-CCCCHH
Q 010162 242 GF-PGETDE 249 (516)
Q Consensus 242 Gf-PGETee 249 (516)
|+ |=.+..
T Consensus 195 GI~pi~s~~ 203 (281)
T TIGR00677 195 GIMPINNYA 203 (281)
T ss_pred eccccCCHH
Confidence 66 334433
No 226
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=46.75 E-value=3.6e+02 Score=30.05 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHc
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~ 187 (516)
.+++.+++-++.+.+.|+..|.|-|- .+ .-.+....++++.+.+.++. ...+.+..=+-..+ .+....+...
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDt-aG---ll~P~~~~~LV~~Lk~~~~~--~ipI~~H~Hnt~Gl--A~An~laAie 223 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDM-AA---LLKPQPAYDIVKGIKEACGE--DTRINLHCHSTTGV--TLVSLMKAIE 223 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC-cc---CCCHHHHHHHHHHHHHhCCC--CCeEEEEeCCCCCc--HHHHHHHHHH
Confidence 38999999999999999999998772 22 22223578888888776531 12344432111111 1111223344
Q ss_pred CCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----
Q 010162 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----- 262 (516)
Q Consensus 188 ~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~----- 262 (516)
+| +..++-.+-..+ .+...-....++..|+.. |+.. |=+.+.+.+..+++++++
T Consensus 224 AG--ad~vDtai~Glg--------~~aGn~atE~vv~~L~~~--g~~t---------giDl~~L~~i~~~~~~vr~~y~~ 282 (499)
T PRK12330 224 AG--VDVVDTAISSMS--------LGPGHNPTESLVEMLEGT--GYTT---------KLDMDRLLKIRDHFKKVRPKYKE 282 (499)
T ss_pred cC--CCEEEeeccccc--------ccccchhHHHHHHHHHhc--CCCC---------CCCHHHHHHHHHHHHHHHHHHhc
Confidence 44 788887776642 222223445555555554 4321 223455555555555442
Q ss_pred C----CeEEEEEeee-cCCCccccCC-CCCHHHHHHHHHHHHHHHHHHhhhhcCCCcE
Q 010162 263 F----PQVHISQFYP-RPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 314 (516)
Q Consensus 263 ~----d~v~if~~sp-~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~~~~~~~vG~~ 314 (516)
+ ..+....|.+ .||--+.++. |+-..-...|+ .++.+++.+-....|..
T Consensus 283 ~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~---~ev~~e~~~Vr~~lG~~ 337 (499)
T PRK12330 283 FESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRM---DEVLEEVPRVRKDAGYP 337 (499)
T ss_pred ccccccCCCCccccCCCCCCchhhHHHHHHHcChhhHH---HHHHHHHHHHHHHcCCC
Confidence 1 1122333444 6776666665 44333333333 34444454455556654
No 227
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=46.13 E-value=4.1e+02 Score=30.17 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHc
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~ 187 (516)
.+++.+++-++.+.+.|+..|.|-|- . |.-.+....++++.+.+.++ ..+.+..=+-..+ .+....+...
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt--~--G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gl--a~An~laAv~ 220 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDM--A--GLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGL--APMTYLKAVE 220 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc--C--CCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCc--HHHHHHHHHH
Confidence 47999999999999999999998773 2 22223357788888876653 2233332111111 1111223334
Q ss_pred CCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 188 ~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
+| +.+++-.+-. |..+.+.-....++..|+.. |.. ++-+.+.+.+.-++++++.
T Consensus 221 aG--ad~vD~ai~g--------~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 221 AG--VDIIDTAISP--------LAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREVR 274 (592)
T ss_pred hC--CCEEEeeccc--------cCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHHH
Confidence 44 7888877764 44444555566666666654 432 3445677777777777664
No 228
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=45.70 E-value=56 Score=32.88 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcEEEEeec
Q 010162 105 LGSYTVESLVGRVRTVIADGVKEVWLSSE 133 (516)
Q Consensus 105 ~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~ 133 (516)
.+..+++++++.++.+.+.|..-|-+.+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~ 45 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGE 45 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34457899999999999999998887543
No 229
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.20 E-value=2.4e+02 Score=27.55 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCC
Q 010162 111 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 111 e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~ 190 (516)
++.++-++.+.+.|+.++++++-+...++.+ ...++++++.+.... ..+--+-+.. .+... .+...+
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~---~~~~~i~~i~~~~~~---pv~~~GGI~s---~~d~~---~~l~~G- 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRE---TMLDVVERVAEEVFI---PLTVGGGIRS---LEDAR---RLLRAG- 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCc---ccHHHHHHHHHhCCC---CEEEeCCCCC---HHHHH---HHHHcC-
Confidence 3555566667778999999998654333222 246778888765431 1221121221 12222 222233
Q ss_pred CccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc-----------CCCCCHHHHHHHHHHHH
Q 010162 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLIK 259 (516)
Q Consensus 191 ~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvG-----------fPGETeedf~etl~fi~ 259 (516)
+..+.+|-... .+.+.+.++++.+.+. .+.+..|+-.+ -+.+|..+..+.+..+.
T Consensus 94 -~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 159 (243)
T cd04731 94 -ADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVE 159 (243)
T ss_pred -CceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHH
Confidence 66777773221 1334444444444322 36677775533 33456666667777788
Q ss_pred hcCCCeEEEEEeeecCCC
Q 010162 260 EYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 260 el~~d~v~if~~sp~pGT 277 (516)
+.+++.+.++.... .||
T Consensus 160 ~~G~d~i~v~~i~~-~g~ 176 (243)
T cd04731 160 ELGAGEILLTSMDR-DGT 176 (243)
T ss_pred HCCCCEEEEeccCC-CCC
Confidence 88999888877553 344
No 230
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=45.04 E-value=1.2e+02 Score=27.40 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 214 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 214 ~t~e~~~~~I~~lr~~~pGi~i~td~IvGf-PGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
.+.+.+.+.++.+++. |+. ..-+|+|- +.-.++++.+..+.+++++++.+ |. |||+..
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~-~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v--f~----pgt~~~ 120 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLK-DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV--FA----PGTPPE 120 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCC-CCeEEEECCCCCChhhhHHHHHHHHHcCCCEE--EC----cCCCHH
Confidence 4667889999999998 763 25567765 33467888888899999998854 33 677643
No 231
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=44.39 E-value=4.9e+02 Score=28.98 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~--yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+.++.+.-++.+.+.|+..|-..|+-++. +.. ...+--+.|+.+.+.++
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rf-l~Edpwerlr~lr~~~~ 75 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRF-LNEDPWERLRTFRKLMP 75 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC
Confidence 467888888888888888888877653332 110 11223455566655444
No 232
>PRK13774 formimidoylglutamase; Provisional
Probab=44.09 E-value=2.1e+02 Score=29.54 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchH------HHHHHHH
Q 010162 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL------EHLKEIA 183 (516)
Q Consensus 110 ~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~------~~l~eL~ 183 (516)
.+.|.+.+..+.+.|..-|+|.|++..+||. ++.+.+..+......+.+. .|.+.-+ ... +.
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g~---------~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~--~~ 173 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYAQ---------YLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTS--FR 173 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHHH---------HHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChH--HH
Confidence 4555666666777788888888877777654 3333332221101223332 1111100 011 22
Q ss_pred HHHcCCCCccEEEecccCCC--HHHHHhcCC----CCCHHHHHH--------HHHHHHHhCCCCE--EEEEEE-------
Q 010162 184 EVLRHPCVYSFLHVPVQSGS--DAVLSAMNR----EYTLSDFRT--------VVDTLIELVPGMQ--IATDII------- 240 (516)
Q Consensus 184 ~l~~~~~~~~~i~iGlQSgs--d~vLk~MnR----~~t~e~~~~--------~I~~lr~~~pGi~--i~td~I------- 240 (516)
.+...+...+++++|+++.. ++.++.+++ -++.+++.+ +++.+.+-...+. +..|.+
T Consensus 174 ~i~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPG 253 (311)
T PRK13774 174 QILEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPG 253 (311)
T ss_pred HHHhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCC
Confidence 22222222568899999874 444444332 224455433 4444433111244 344445
Q ss_pred EcCC---CCCHHHHHHHHHHHHhc-CCCeEEEEEeeecCC
Q 010162 241 CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 276 (516)
Q Consensus 241 vGfP---GETeedf~etl~fi~el-~~d~v~if~~sp~pG 276 (516)
+|-| |=|..++.+.++.+.+. ++-.+.+.-|+|.-.
T Consensus 254 tgtP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 254 VSAPAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 4444 35677777777776443 455566777777643
No 233
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=43.23 E-value=4e+02 Score=27.58 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCcEEEEeecCCCCCCCC----cCCCH----HHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 114 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 114 v~EI~~L~~~GvkeI~l~g~n~~~yg~d----~~~~l----~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
++.++.+++.|++.+.|+--.-+.++.. ....| .++++++.+ ++ ..+-++ |-. ++...++.++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-lG----miiDvS--H~s--~~~~~dv~~~ 186 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-LG----IIIDLS--HLS--ERTFWDVLDI 186 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-cC----CEEEcC--CCC--HHHHHHHHHh
Confidence 6688899999999999985444444321 11122 355555542 22 223332 221 2333344444
Q ss_pred HcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC----CCCHHHHHHHHHHHHhc
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP----GETDEDFNQTVNLIKEY 261 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfP----GETeedf~etl~fi~el 261 (516)
...+-+ +=|.+.+.+..-.|+.+-+ .++.+.+. |=.+...+.-.|- .-|.+++.+-++++.++
T Consensus 187 s~~Pvi-------aSHsn~ral~~h~RNltD~----~i~~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l 253 (309)
T cd01301 187 SNAPVI-------ASHSNARALCDHPRNLTDA----QLKAIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDL 253 (309)
T ss_pred cCCCEE-------EeccChHHhcCCCCCCCHH----HHHHHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 433311 1234455555566777755 44566666 6677777766653 56889999999997765
Q ss_pred -CCCeEEEEE
Q 010162 262 -KFPQVHISQ 270 (516)
Q Consensus 262 -~~d~v~if~ 270 (516)
+.+++.+-.
T Consensus 254 ~G~dhVgiGs 263 (309)
T cd01301 254 IGIDHVGLGS 263 (309)
T ss_pred cCCCeEEECc
Confidence 888887753
No 234
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=41.68 E-value=3.6e+02 Score=26.78 Aligned_cols=98 Identities=8% Similarity=0.095 Sum_probs=61.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh-cCC--CCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNR--EYTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 164 ~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~-MnR--~~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
-+.+.+..|+.+ .++..+... .+..|.|.+=.-.+++.+. ++- ..+.+.+.+.++.+++. ++.+..=+=
T Consensus 71 ivnv~~~~~ee~----~~~a~~v~~--~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR 142 (231)
T TIGR00736 71 SVNVRFVDLEEA----YDVLLTIAE--HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIR 142 (231)
T ss_pred EEEEecCCHHHH----HHHHHHHhc--CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeC
Confidence 444444455333 333333333 3778888887777766542 111 13778888899999876 666665555
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 272 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~s 272 (516)
.|. +.++..+..+.+++.+.+.+++....
T Consensus 143 ~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 143 GNC---IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred CCC---CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 554 34456677778899999999997543
No 235
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=41.34 E-value=3.9e+02 Score=27.02 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCCceEEEeecCCc------
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP------ 173 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~------~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~------ 173 (516)
|.++...+.+++..+.+.|++.|..+.+|....|... .....+|++.+...... ...+.+. .+|.
T Consensus 80 rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~--~~~i~va-~~P~~hp~~~ 156 (287)
T PF02219_consen 80 RDRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGD--DFSIGVA-GYPEGHPEAP 156 (287)
T ss_dssp TTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGG--GSEEEEE-E-TTHHTTCS
T ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCc--ccccccc-cCCCCCcccc
Confidence 3456789999999999999999998877766554311 12356788777643221 1234333 2332
Q ss_pred chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC--EEEEEEE
Q 010162 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDII 240 (516)
Q Consensus 174 ~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi--~i~td~I 240 (516)
.+..++..+.+-..++ +.++- -| =-|+.+.+.+.++.+++. |+ .+...++
T Consensus 157 ~~~~~~~~l~~Ki~aG--A~f~i--TQ-----------~~fd~~~~~~~~~~~~~~--g~~~pIi~GI~ 208 (287)
T PF02219_consen 157 DFEAELKRLKKKIDAG--ADFII--TQ-----------PFFDAEAFERFLDRLREA--GIDVPIIPGIM 208 (287)
T ss_dssp SHHHHHHHHHHHHHTT--ESEEE--EE-----------E-SSHHHHHHHHHHHHHT--THTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHCC--CCEEe--cc-----------ccCCHHHHHHHHHHHHHc--CCCCcEEEEEe
Confidence 2233444444433444 33321 01 126788999999999998 65 6655555
No 236
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=41.14 E-value=91 Score=32.97 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-----CCCCC-----------------Cc
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-----LPPDG-----------------ST 163 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~-----i~~~~-----------------~~ 163 (516)
..++.+..+++|+.|.+.|..-+.+.-+|.- -++.+.+|.+. .+.+- ..
T Consensus 26 ~t~Dv~atv~QI~~L~~aGceivRvavp~~~---------~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~ 96 (359)
T PF04551_consen 26 DTRDVEATVAQIKRLEEAGCEIVRVAVPDME---------AAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVD 96 (359)
T ss_dssp -TT-HHHHHHHHHHHHHCT-SEEEEEE-SHH---------HHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-S
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhC
Confidence 4678999999999999999988887764321 23333333333 11111 12
Q ss_pred eEEEeecCCcch-----------HHHHHHHHHHHcCCCCccEEEecccCCC--HHHHHhcCCCCCH----HHHHHHHHHH
Q 010162 164 MLRIGMTNPPFI-----------LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTL 226 (516)
Q Consensus 164 ~iri~~~~P~~i-----------~~~l~eL~~l~~~~~~~~~i~iGlQSgs--d~vLk~MnR~~t~----e~~~~~I~~l 226 (516)
.+|+ ||.++ .+.+.++.+..+.... -+-||+-||| +++++++ +.+. +..++-++.+
T Consensus 97 kiRI---NPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i--pIRIGvN~GSL~~~~~~ky--~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 97 KIRI---NPGNIVDEFQEELGSIREKVKEVVEAAKERGI--PIRIGVNSGSLEKDILEKY--GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp EEEE----TTTSS----SS-SS-HHHHHHHHHHHHHHT---EEEEEEEGGGS-HHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred eEEE---CCCcccccccccccchHHHHHHHHHHHHHCCC--CEEEecccccCcHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 3443 56655 5556555554443322 4666666554 5666666 2232 3445556666
Q ss_pred HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 010162 227 IELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259 (516)
Q Consensus 227 r~~~pGi~i~td~IvGfPGETeedf~etl~fi~ 259 (516)
.+. |+ .|+++-+-.-+.....+..+.+.
T Consensus 170 e~~--~f---~~iviSlKsSdv~~~i~ayr~la 197 (359)
T PF04551_consen 170 EEL--GF---DDIVISLKSSDVPETIEAYRLLA 197 (359)
T ss_dssp HHC--T----GGEEEEEEBSSHHHHHHHHHHHH
T ss_pred HHC--CC---CcEEEEEEeCChHHHHHHHHHHH
Confidence 666 54 45555554555555444444443
No 237
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=38.46 E-value=2.8e+02 Score=27.25 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchHHHHHHHHHHHcCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-~~P~~i~~~l~eL~~l~~~~~ 190 (516)
+.++-++.+.+.|+++++++|-|-. .|.+ ...++++++.+.... .+.++- ++. .+. +.+++..+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~~----~v~vgGGir~---~ed---v~~~l~~G- 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWPL----GLWVDGGIRS---LEN---AQEWLKRG- 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCCC----CEEEecCcCC---HHH---HHHHHHcC-
Confidence 4555666777889999999997643 2432 246778888765431 233332 111 122 33334444
Q ss_pred CccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHHHhcCCCeEEE
Q 010162 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVHI 268 (516)
Q Consensus 191 ~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfP--GETeedf~etl~fi~el~~d~v~i 268 (516)
+.++-+|-++.+++ -+.++++.+.+. .+.+..|+-=|.- ..+..+..+.++.+.+. ++.+++
T Consensus 101 -a~~viigt~~~~~~------------~~~~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~ 164 (233)
T cd04723 101 -ASRVIVGTETLPSD------------DDEDRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIV 164 (233)
T ss_pred -CCeEEEcceeccch------------HHHHHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEE
Confidence 67888888776532 122223332211 3566677643310 13556677788888888 888877
Q ss_pred EEeeecCCC
Q 010162 269 SQFYPRPGT 277 (516)
Q Consensus 269 f~~sp~pGT 277 (516)
..... .||
T Consensus 165 ~di~~-~G~ 172 (233)
T cd04723 165 LDIDR-VGS 172 (233)
T ss_pred EEcCc-ccc
Confidence 66543 444
No 238
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=38.46 E-value=6.5e+02 Score=28.70 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~-i~td~IvGfPGETeedf~etl~fi~el 261 (516)
.||.+.+.+.++.+.+. |+. +..-=++|+ =|++++.+.+..+++.
T Consensus 150 ~~t~e~~~~~ak~l~~~--Gad~I~IkDtaG~--l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 150 VHTLDNFLELGKKLAEM--GCDSIAIKDMAGL--LTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHHc--CCCEEEeCCcccC--CCHHHHHHHHHHHHhh
Confidence 57888888888888888 652 332224454 4778888888777654
No 239
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=38.12 E-value=4.5e+02 Score=26.76 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCC------CHHHHHHHHHHhCCC
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV------NLPILLNAIVAELPP 159 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~------~l~eLL~~I~~~i~~ 159 (516)
++.+.-++..+..|.+.|++..+... ++.||.+... ...+.+++|.+.++.
T Consensus 55 TKnp~P~l~~L~~l~~~gy~~yfq~T--it~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG~ 111 (266)
T PF08902_consen 55 TKNPAPFLPYLDELDERGYPYYFQFT--ITGYGKDLEPNVPPKDERIETFRELSERIGP 111 (266)
T ss_pred cCCcHHHHhhHHHHHhCCCceEEEEE--eCCCCccccCCCCCHHHHHHHHHHHHHHHCC
Confidence 45666788888888888998765544 6778887532 234555666666653
No 240
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.74 E-value=1.7e+02 Score=26.61 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf-PGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
+++.+.+.+.++.+++. |+.-. -+|+|- |.-.++|+.+-.+.+++++++.+ |. |||++.
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~v--F~----pgt~~~ 122 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRV--FA----PGTPPE 122 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEE--EC----cCCCHH
Confidence 46778889999999998 76322 266765 33456777766777889998754 33 677653
No 241
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=37.62 E-value=3.9e+02 Score=25.88 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcC
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~ 188 (516)
++.+++ +.+.+.|++++++++-+....+.+ . ..++++++.+..+ ..+.++ ..+..+ +.+. .+...
T Consensus 31 dp~~~a---~~~~~~g~~~i~i~dl~~~~~~~~--~-n~~~~~~i~~~~~----~pv~~~-ggi~~~-~d~~---~~~~~ 95 (232)
T TIGR03572 31 DPVNAA---RIYNAKGADELIVLDIDASKRGRE--P-LFELISNLAEECF----MPLTVG-GGIRSL-EDAK---KLLSL 95 (232)
T ss_pred CHHHHH---HHHHHcCCCEEEEEeCCCcccCCC--C-CHHHHHHHHHhCC----CCEEEE-CCCCCH-HHHH---HHHHc
Confidence 455554 445568999999998765433332 2 3567777776543 223333 222222 2222 22333
Q ss_pred CCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEEEcCCC------------CCHHHHHHH
Q 010162 189 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP--GMQIATDIICGFPG------------ETDEDFNQT 254 (516)
Q Consensus 189 ~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p--Gi~i~td~IvGfPG------------ETeedf~et 254 (516)
+ +..+.+|-.... +.+ .++.+.+.++ .+.+..|+--|+++ ++..+..+.
T Consensus 96 G--~~~vilg~~~l~-----------~~~----~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (232)
T TIGR03572 96 G--ADKVSINTAALE-----------NPD----LIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEW 158 (232)
T ss_pred C--CCEEEEChhHhc-----------CHH----HHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHH
Confidence 3 677888832211 123 3333333332 24567776554221 234445667
Q ss_pred HHHHHhcCCCeEEEEEeee
Q 010162 255 VNLIKEYKFPQVHISQFYP 273 (516)
Q Consensus 255 l~fi~el~~d~v~if~~sp 273 (516)
+..+.+.+.+.+.+...+.
T Consensus 159 ~~~~~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 159 AREAEQLGAGEILLNSIDR 177 (232)
T ss_pred HHHHHHcCCCEEEEeCCCc
Confidence 7777888999888887544
No 242
>PHA01735 hypothetical protein
Probab=37.59 E-value=49 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccC----CCCCHHHHHHH
Q 010162 246 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM----KKVPSAVVKKR 293 (516)
Q Consensus 246 ETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~----~~v~~~~~~eR 293 (516)
-|-.|+...++|+++..++. +|.+|+|+..+ |++..+..++|
T Consensus 30 ATtaDL~AA~d~Lk~NdItg------v~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 30 ATTADLRAACDWLKSNDITG------VAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred ccHHHHHHHHHHHHHCCCce------eeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 47789999999999998764 37889998764 45655555443
No 243
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=37.16 E-value=4.7e+02 Score=26.72 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=79.7
Q ss_pred CcccCccCCC---cCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecC
Q 010162 95 YCKTKHARGH---LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 171 (516)
Q Consensus 95 FC~ip~~rG~---~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~ 171 (516)
||.+..--|- -.+.+.++=++-++.|.+.|+++|-+. ++..+.. -.+.++++.+..... ...++...-
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~~~--~~~~~~al~ 74 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDLIP--DDVTIQVLT 74 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccCCC--CCCEEEEEc
Confidence 5555422243 257889999999999999999999864 4554432 246677774321000 112232222
Q ss_pred CcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCC-
Q 010162 172 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQ-IATDIICGFPGE- 246 (516)
Q Consensus 172 P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~-i~td~IvGfPGE- 246 (516)
+.. ...+....+.. .+.-...+++.+ |.||..+ +.+|+.. ..+.+.++++.+++. |+. +.+.|.+-|-+|
T Consensus 75 r~~-~~die~a~~~~-~~~~~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~ED 149 (284)
T cd07942 75 QAR-EDLIERTFEAL-RGAKKAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPES 149 (284)
T ss_pred CCC-hhhHHHHHHHh-CCCCCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCcc
Confidence 221 11121111110 121123576666 4566555 4566543 456677788888887 653 344555555553
Q ss_pred ---C-HHHHHHHHHHHHhc
Q 010162 247 ---T-DEDFNQTVNLIKEY 261 (516)
Q Consensus 247 ---T-eedf~etl~fi~el 261 (516)
+ .+.+.+.++.+.+.
T Consensus 150 asr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 150 FSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 2 34444455555444
No 244
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=37.08 E-value=6.8e+02 Score=28.54 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred EEEecccCCC--HHHHHhcCCCCCH----HHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 194 FLHVPVQSGS--DAVLSAMNREYTL----SDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 194 ~i~iGlQSgs--d~vLk~MnR~~t~----e~~~~~I~~lr~~~pGi-~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
-+-||+-||| ++++.+.+ .+. +..++.++.+.+. |+ .+...+=.-.+-++-..++.....+.+.+.+
T Consensus 156 ~iRIGvN~GSL~~~i~~~yg--~tpe~mVeSAle~~~i~e~~--~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~d 229 (611)
T PRK02048 156 AIRIGVNHGSLSDRIMSRYG--DTPEGMVESCMEFLRICVEE--HFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMH 229 (611)
T ss_pred CEEEecCCcCchHHHHHHhC--CChHHHHHHHHHHHHHHHHC--CCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCC
Confidence 4777777765 56666653 343 4456667777777 65 3444444444555556666666666655544
No 245
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.07 E-value=4e+02 Score=25.88 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCc
Q 010162 113 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 192 (516)
Q Consensus 113 Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~ 192 (516)
.++-++.+.+.|++++.+.+-+...-+. ....++++++.+..+ ..+.++.. ... .+... .++..+ +
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~GG-i~~-~~~~~---~~~~~G--a 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLGGG-IRS-AEDAA---SLLDLG--V 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEcCC-cCC-HHHHH---HHHHcC--C
Confidence 4445555667899999999865433222 234667777776543 22333211 111 12222 223333 6
Q ss_pred cEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EcCCCCCHHHHHHHHHHHHhcCCCeE
Q 010162 193 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 193 ~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I------vGfPGETeedf~etl~fi~el~~d~v 266 (516)
..+++|-....+ .+.+.++.+.+... .+.+..|+. -|.-.++..+..+..+.+.+.+++.+
T Consensus 100 ~~v~iGs~~~~~-----------~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 100 DRVILGTAAVEN-----------PEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred CEEEEChHHhhC-----------hHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 788988544321 22233333332111 233444432 23323333366677777788899988
Q ss_pred EEEEee
Q 010162 267 HISQFY 272 (516)
Q Consensus 267 ~if~~s 272 (516)
.+....
T Consensus 167 ~~~~~~ 172 (241)
T PRK13585 167 LFTNVD 172 (241)
T ss_pred EEEeec
Confidence 876654
No 246
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=36.98 E-value=1.1e+02 Score=25.26 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 216 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 216 ~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
.+.+.+..+.+++..|+..+..-|.-+ +.-++.+.++-+.+.+.+++.+.++.+.+|...
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~ 75 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEV 75 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhh
Confidence 356777788888876665555555554 234677788888888999999999999977643
No 247
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.63 E-value=1.8e+02 Score=27.63 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
+.+...++.+.+++.+||+.+... .|+- ++++-++.++.|.+.++|.+.+.-
T Consensus 57 ~~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 57 KPDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEc
Confidence 556678889999999999988764 5543 456667789999999999887765
No 248
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=36.51 E-value=4e+02 Score=25.69 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~ 190 (516)
+.++-++.+.+.|++++++++-|-...|... ..++++++.+..+ ..+.++ .+.. .+.+ ..+...+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~---~~~~i~~i~~~~~----~pi~~ggGI~~---~ed~---~~~~~~G- 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPV---NLPVIKKIVRETG----VPVQVGGGIRS---LEDV---EKLLDLG- 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCC---cHHHHHHHHHhcC----CCEEEeCCcCC---HHHH---HHHHHcC-
Confidence 3344445566789999999986554334321 3567777765432 223332 1111 1222 2333333
Q ss_pred CccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCCCCHHHHHHHHHHHHhcCCC
Q 010162 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 191 ~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~Iv------GfPGETeedf~etl~fi~el~~d 264 (516)
+..+-+|-.... +.+.+.++++.+... .+.+..|+-- |.-..+..+..+.++.+.+.+++
T Consensus 95 -a~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~ 160 (230)
T TIGR00007 95 -VDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE 160 (230)
T ss_pred -CCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC
Confidence 566766643322 224455555554311 2556666542 22112234556677778888999
Q ss_pred eEEEEEeeecCCC
Q 010162 265 QVHISQFYPRPGT 277 (516)
Q Consensus 265 ~v~if~~sp~pGT 277 (516)
.+.+...+. .||
T Consensus 161 ~ii~~~~~~-~g~ 172 (230)
T TIGR00007 161 GIIYTDISR-DGT 172 (230)
T ss_pred EEEEEeecC-CCC
Confidence 888776553 344
No 249
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=36.50 E-value=4e+02 Score=25.67 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~ 190 (516)
+.++-++.+.+.|++++++++.|-..-|.+ ...++++++.+... ..+.++ -+. . .+.+ ..+...+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~~~----~pv~~~GGI~--~-~ed~---~~~~~~G- 96 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKP---VNLELIEAIVKAVD----IPVQVGGGIR--S-LETV---EALLDAG- 96 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCc---ccHHHHHHHHHHCC----CCEEEcCCcC--C-HHHH---HHHHHcC-
Confidence 334444556668999999999754333322 24667777766532 122222 111 1 1222 2333333
Q ss_pred CccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE------EEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI------ICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 191 ~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~------IvGfPGETeedf~etl~fi~el~~d 264 (516)
+..+.+|-...++ .+.+.++++.+.+ .+.+..|+ +.|.-..+..+..+.++.+.+.+++
T Consensus 97 -a~~vilg~~~l~~-----------~~~l~ei~~~~~~---~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 97 -VSRVIIGTAAVKN-----------PELVKEACKKFPG---KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred -CCEEEECchHHhC-----------HHHHHHHHHHhCC---CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 5667777544332 2334444444422 24555554 1233223445566777888888888
Q ss_pred eEEEEE
Q 010162 265 QVHISQ 270 (516)
Q Consensus 265 ~v~if~ 270 (516)
.+.++.
T Consensus 162 ~ii~~~ 167 (233)
T PRK00748 162 AIIYTD 167 (233)
T ss_pred EEEEee
Confidence 766654
No 250
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=35.56 E-value=4e+02 Score=29.37 Aligned_cols=124 Identities=12% Similarity=0.113 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHc
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~ 187 (516)
.+.+.+++-++.+.+.|+..|.|.|. .+ .-.+....++++++.+... ..+.+..=+-..+ .+....+...
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt-aG---~l~P~~v~~Lv~alk~~~~----~pi~~H~Hnt~Gl--A~An~laAie 229 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM-AG---ILTPKAAKELVSGIKAMTN----LPLIVHTHATSGI--SQMTYLAAVE 229 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC-CC---CcCHHHHHHHHHHHHhccC----CeEEEEeCCCCcc--HHHHHHHHHH
Confidence 37888999999999999999998873 22 2222346788888864321 2333332111111 1111223334
Q ss_pred CCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 188 ~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
+| +..++..+-+ |..+.+.-....++..++.. |+.. |+ +.+.+.+..++++++.
T Consensus 230 AG--ad~vD~ai~g--------~g~gagN~~tE~lv~~L~~~--g~~t------gi---Dl~~L~~~a~~~~~vr 283 (468)
T PRK12581 230 AG--ADRIDTALSP--------FSEGTSQPATESMYLALKEA--GYDI------TL---DETLLEQAANHLRQAR 283 (468)
T ss_pred cC--CCEEEeeccc--------cCCCcCChhHHHHHHHHHhc--CCCC------Cc---CHHHHHHHHHHHHHHH
Confidence 44 7888877754 44444445556666666665 5442 22 2455555555555553
No 251
>PRK10812 putative DNAse; Provisional
Probab=34.92 E-value=1.8e+02 Score=29.20 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch--HHHHHHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 186 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i--~~~l~eL~~l~ 186 (516)
+.++++++++ +.|+..++.+|.+...+ .+. .++.+..+ ..+..++ ++|..+ ...+.+|..+.
T Consensus 21 d~~~vl~~a~---~~gv~~~~~~~~~~~~~--------~~~-~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKAA---ARDVKFCLAVATTLPGY--------RHM-RDLVGERD---NVVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHHH---HcCCCEEEEeCCCHHHH--------HHH-HHHHhhCC---CeEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 5677766654 57999888877533221 222 23333333 1333444 778654 33444455555
Q ss_pred cCCCCccEE-EecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC-
Q 010162 187 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP- 264 (516)
Q Consensus 187 ~~~~~~~~i-~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d- 264 (516)
..+. +..| .+|+.-.-+. -.+....+-+...++.+++. +..+..+.- +...++++.+++.+..
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~r--------~a~~~~l~iL~~~~~~~ 149 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVHTR--------DARADTLAILREEKVTD 149 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEee--------CchHHHHHHHHhhcCCC
Confidence 4432 4455 6777653110 00112335567778888888 777666642 1223666777765332
Q ss_pred -eEEEEEee
Q 010162 265 -QVHISQFY 272 (516)
Q Consensus 265 -~v~if~~s 272 (516)
.+-++.|+
T Consensus 150 ~~~v~H~fs 158 (265)
T PRK10812 150 CGGVLHCFT 158 (265)
T ss_pred CCEEEEeec
Confidence 33455553
No 252
>PRK14057 epimerase; Provisional
Probab=34.87 E-value=4.9e+02 Score=26.27 Aligned_cols=136 Identities=7% Similarity=0.020 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-+.-++-+|++.+.+.|+..+. +.|++|-.. -..+ .+.++.+.+.+ ...+.+...+|...-+.+
T Consensus 28 ~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN-itfG---p~~i~~i~~~~----p~DvHLMV~~P~~~i~~~----- 94 (254)
T PRK14057 28 AGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ-FTVG---PWAVGQLPQTF----IKDVHLMVADQWTAAQAC----- 94 (254)
T ss_pred hcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc-cccC---HHHHHHhccCC----CeeEEeeeCCHHHHHHHH-----
Confidence 45678899999999999987765 445444221 0011 34556653322 246777777776544333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE-------EEEEEEEcCCCCCHHHHHHHHHH
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-------IATDIICGFPGETDEDFNQTVNL 257 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~-------i~td~IvGfPGETeedf~etl~f 257 (516)
.+.+ +.++.+-.|+. ....+.++.+|+. |+. +.+.+-+. |+-..+.++..++.
T Consensus 95 -~~aG--ad~It~H~Ea~--------------~~~~~~l~~Ir~~--G~k~~~~~~~~kaGlAln-P~Tp~e~i~~~l~~ 154 (254)
T PRK14057 95 -VKAG--AHCITLQAEGD--------------IHLHHTLSWLGQQ--TVPVIGGEMPVIRGISLC-PATPLDVIIPILSD 154 (254)
T ss_pred -HHhC--CCEEEEeeccc--------------cCHHHHHHHHHHc--CCCcccccccceeEEEEC-CCCCHHHHHHHHHh
Confidence 2233 66788888853 2356788899998 763 44566655 77666766655542
Q ss_pred HHhcCCCeEEEEEeeecCCCccccC
Q 010162 258 IKEYKFPQVHISQFYPRPGTPAARM 282 (516)
Q Consensus 258 i~el~~d~v~if~~sp~pGTpa~~~ 282 (516)
+|.+- .++..||.--.++
T Consensus 155 -----vD~VL--vMtV~PGfgGQ~F 172 (254)
T PRK14057 155 -----VEVIQ--LLAVNPGYGSKMR 172 (254)
T ss_pred -----CCEEE--EEEECCCCCchhc
Confidence 35554 4566777654433
No 253
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=34.52 E-value=4.6e+02 Score=25.80 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-+.-.+-+|++.+.+.|+..+. +.|++|-.. -..+ .+.++.+.+... +....+.+...+|...-+.+
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN-~tfg---~~~i~~lr~~~~-~~~~dvHLMv~~P~~~i~~~----- 81 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN-LTIG---PMVCQALRKHGI-TAPIDVHLMVEPVDRIVPDF----- 81 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-cccC---HHHHHHHHhhCC-CCCEEEEeccCCHHHHHHHH-----
Confidence 45677899999999999987755 455444311 0111 345666654311 11256677767775443333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
...+ +.++.+-.|+. .+..+.++.+|+. |+... +-+. |+-..+.++..++ . +|
T Consensus 82 -~~~g--ad~I~~H~Ea~--------------~~~~~~l~~Ir~~--g~k~G--laln-P~T~~~~i~~~l~---~--vD 134 (223)
T PRK08745 82 -ADAG--ATTISFHPEAS--------------RHVHRTIQLIKSH--GCQAG--LVLN-PATPVDILDWVLP---E--LD 134 (223)
T ss_pred -HHhC--CCEEEEcccCc--------------ccHHHHHHHHHHC--CCcee--EEeC-CCCCHHHHHHHHh---h--cC
Confidence 2233 67888888863 2356788999998 76544 4443 6655666654444 2 35
Q ss_pred eEEEEEeeecCCCccccC
Q 010162 265 QVHISQFYPRPGTPAARM 282 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~~~ 282 (516)
.+- .++..||..-.++
T Consensus 135 ~Vl--vMtV~PGf~GQ~f 150 (223)
T PRK08745 135 LVL--VMSVNPGFGGQAF 150 (223)
T ss_pred EEE--EEEECCCCCCccc
Confidence 444 5567788765554
No 254
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.29 E-value=4e+02 Score=25.07 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
|..++++.++-++.+.+.|++-+.+.-.+. .-.+.++.+.+..+. ..+-.+.+.. .+.+.++.
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~---~~iGag~v~~---~~~~~~a~-- 73 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPE---ALIGAGTVLT---PEQADAAI-- 73 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCC---CEEEEEeCCC---HHHHHHHH--
Confidence 556799999999999999999888764211 135577777665441 2333333331 22332222
Q ss_pred HcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 265 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~ 265 (516)
..+ ..+++.|- + + .+.++..++. ++ .+|+|.- |.++..+. .+.+.|+
T Consensus 74 -~~G--a~~i~~p~-~-~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A----~~~Gad~ 120 (190)
T cd00452 74 -AAG--AQFIVSPG-L-D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQA----LELGADI 120 (190)
T ss_pred -HcC--CCEEEcCC-C-C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHH----HHCCCCE
Confidence 223 56788662 1 1 2355556665 43 4567764 77666544 3589999
Q ss_pred EEEEEe
Q 010162 266 VHISQF 271 (516)
Q Consensus 266 v~if~~ 271 (516)
+.+|+.
T Consensus 121 i~~~p~ 126 (190)
T cd00452 121 VKLFPA 126 (190)
T ss_pred EEEcCC
Confidence 998653
No 255
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=34.15 E-value=5.1e+02 Score=26.21 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch-------HHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKE 181 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i-------~~~l~e 181 (516)
.++.+.+-++.|.+.|+++|++..-++.. |.+ +.++.+.+.. .... -..+.++ .|-.. .++..+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-G~E----y~~l~~~v~~-~~~~-F~~i~~g--~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-GEE----YEKLRATVEA-YKHD-FKKIVLG--RPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-SHH----HHHHHHHHHH-HCCC-SSEEEEE----SCSS-----SHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-cHh----HHHHHHHHHH-hhcc-CCeEEec--ccccccccccCChHHHHH
Confidence 45566666677788999999998865543 432 4556555533 3221 2355555 33222 233333
Q ss_pred HHHHHcCC-----CCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHH
Q 010162 182 IAEVLRHP-----CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 256 (516)
Q Consensus 182 L~~l~~~~-----~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~ 256 (516)
+.+.+... ..-.-+.+| ||++. .....|..+-..+++. +.-.+...-+=|+|. +++.+.
T Consensus 127 va~aL~~~~~~~~~~~a~vlmG--HGt~h--------~an~~Y~~l~~~l~~~-~~~~v~vgtvEG~P~-----~~~vi~ 190 (262)
T PF06180_consen 127 VAEALAEEFPKKRKDEAVVLMG--HGTPH--------PANAAYSALQAMLKKH-GYPNVFVGTVEGYPS-----LEDVIA 190 (262)
T ss_dssp HHHHHHCCS-TT-TTEEEEEEE-----SC--------HHHHHHHHHHHHHHCC-T-TTEEEEETTSSSB-----HHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEEe--CCCCC--------CccHHHHHHHHHHHhC-CCCeEEEEEeCCCCC-----HHHHHH
Confidence 33333221 112233333 33322 1223334444444444 223455555557774 778888
Q ss_pred HHHhcCCCeEEEEEeeecCCCcccc
Q 010162 257 LIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 257 fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
.+++.++.++.+.||.-..|.-+.+
T Consensus 191 ~L~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 191 RLKKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp HHHHHT-SEEEEEEESSS--HHHHC
T ss_pred HHHhcCCCeEEEEecccccchhhhh
Confidence 9999999999999999999987764
No 256
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.95 E-value=4.4e+02 Score=25.37 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCcchHHHHHHHHHHHcCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~~~P~~i~~~l~eL~~l~~~~~ 190 (516)
+.++-++.+.+.|+.++.+.+-+...-+.. ...++++++.+..+ ..+.++ -++. .+. +.+++..+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~---~~~~~i~~i~~~~~----~pv~~~GgI~~---~e~---~~~~~~~G- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEP---VNLELIEEIVKAVG----IPVQVGGGIRS---LED---IERLLDLG- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCC---CCHHHHHHHHHhcC----CCEEEeCCcCC---HHH---HHHHHHcC-
Confidence 344444555668999999997654321221 23567777766542 123332 1211 122 22333344
Q ss_pred CccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc------CCCCCHHHHHHHHHHHHhcCCC
Q 010162 191 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG------FPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 191 ~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvG------fPGETeedf~etl~fi~el~~d 264 (516)
+..+-+|-....+ .+.+.++.+.+.+. .+.+..|+-.| ....+..+..+.++.+.+.+++
T Consensus 96 -ad~vvigs~~l~d-----------p~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 96 -VSRVIIGTAAVKN-----------PELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred -CCEEEECchHHhC-----------hHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 6677766544322 23333333333221 24455554322 2223445566777778888899
Q ss_pred eEEEEEe
Q 010162 265 QVHISQF 271 (516)
Q Consensus 265 ~v~if~~ 271 (516)
.+.+...
T Consensus 162 ~iii~~~ 168 (234)
T cd04732 162 AIIYTDI 168 (234)
T ss_pred EEEEEee
Confidence 8877654
No 257
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=33.88 E-value=4.8e+02 Score=26.07 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-------cCCcchHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-------TNPPFILEHLKE 181 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-------~~P~~i~~~l~e 181 (516)
+++++++.++.+-+.|+..+++....+..++.. .+-.-++-.+.... .+|+++. -+|..+.+.+.-
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~--~~p~~~~a~~a~~T-----~~i~lg~~v~~~~~~~P~~~A~~~at 93 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHFTDYGSS--PDPFVLLAALAART-----KRIRLGTAVTPLPLRHPVRLAEQIAT 93 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTST--S-HHHHHHHHHHT------SSSEEEEEEEECSSS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCccccc--hhHHHHHHHHhhcc-----CccceeeeeecccccchHHHHHHHHH
Confidence 589999999998889999999988766655532 12233344444332 2344443 233333333332
Q ss_pred HHHHHcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhC
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELV 230 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~ 230 (516)
|.. +..+ ++.+|+=+|+...- ..++.++ ..+.+.+.++.+++..
T Consensus 94 ld~-ls~G----R~~lgig~G~~~~~~~~~G~~~~~~~~~~~E~~~~i~~l~ 140 (307)
T PF00296_consen 94 LDQ-LSGG----RFILGIGRGSSPDEFRAFGIPPDERYARMEEYLEVIRRLW 140 (307)
T ss_dssp HHH-HTTS-----EEEEEESTSHHHHHHHCT-SHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-cCCC----CceeEeeccCChhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 332 3333 67888888888776 5665533 3455566666666653
No 258
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=33.05 E-value=1.3e+02 Score=30.02 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if 269 (516)
..+.+++...++.+++..+...+..|+=.|+ |++.++..++..-+.+.+.+-+++=
T Consensus 54 ~vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 54 PYPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred CcCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEEc
Confidence 3588999999999999877678999999998 5687888888887777988877763
No 259
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=32.87 E-value=1.6e+02 Score=25.81 Aligned_cols=60 Identities=7% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEE-cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 216 LSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 216 ~e~~~~~I~~lr~~~pGi~i~td~Iv-GfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
.+.+.+..+.+++..|+..+.+-|+= +-| ++.+.++.+.+.+..++.+.||...+|--..
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 77 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTK 77 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCcccc
Confidence 46778888888887666677777662 444 6888889999999999999999988887443
No 260
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.55 E-value=5.4e+02 Score=25.99 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=15.2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHh
Q 010162 207 LSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 207 Lk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
.+.+..+.+.+++.+.++.+|+.
T Consensus 67 ~rAL~~g~~~~~~~~~~~~~r~~ 89 (263)
T CHL00200 67 NRALKQGINLNKILSILSEVNGE 89 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHhcC
Confidence 34455667777777777777753
No 261
>PLN02615 arginase
Probab=32.43 E-value=6.1e+02 Score=26.58 Aligned_cols=155 Identities=16% Similarity=0.264 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHH-------HHHH
Q 010162 110 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 181 (516)
Q Consensus 110 ~e~Iv~EI~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~-------~l~e 181 (516)
.+.|-+.++.+.+. +..-|+|.|++..+|+ .++.+.+..+. ....+.+. .|++..++ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~---------~iral~~~~~~-~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISYP---------VVRAVSEKLGG-PVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhHH---------HHHHHHHHhCC-CeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 45555555556664 5456777676666654 24444433311 12234443 23222111 0000
Q ss_pred HHHHHcCCCCccEEEecccCCCHHHHHhcCC-C---CCHHH---HHHHHHHHHHh--CCCCEEEEE--EE-------EcC
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-E---YTLSD---FRTVVDTLIEL--VPGMQIATD--II-------CGF 243 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR-~---~t~e~---~~~~I~~lr~~--~pGi~i~td--~I-------vGf 243 (516)
+..+.+.+...+.+++|+++.+.+-.+.+++ + ++..+ ..+.++.++.. .+.+.++.| .+ +|-
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 2222333323578999999988766655433 2 12222 24455665431 122444444 33 233
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCeEEEEEeeecCC
Q 010162 244 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 276 (516)
Q Consensus 244 P---GETeedf~etl~fi~el~~d~v~if~~sp~pG 276 (516)
| |=|..++.+.++.+.. ++-.+-+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 3 3566777777766643 444555666776543
No 262
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=32.37 E-value=4.5e+02 Score=26.36 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 153 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I 153 (516)
.+.++|+|++.+....+.|-.-+.|-++|...||. +.+-++++
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA-----~~EQm~~L 99 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA-----LAEQMREL 99 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH-----HHHHHHHH
Confidence 46789999999999999998889999999998975 44444444
No 263
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=31.67 E-value=4.9e+02 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeec
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSE 133 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~ 133 (516)
..++.+.-+++++.|.+.|..-+.++-+
T Consensus 40 ~T~D~~atv~Qi~~L~~aGceiVRvtvp 67 (606)
T PRK00694 40 ATTDVDGTVRQICALQEWGCDIVRVTVQ 67 (606)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4668899999999999999888887764
No 264
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=31.53 E-value=3.8e+02 Score=27.54 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred eEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 010162 164 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDII 240 (516)
Q Consensus 164 ~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~-MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~I 240 (516)
-+-+...+|+. +.+..++... ..+..|+|.+=-..+.+.+. ++=. .+.+.+.++++.+++..+ +.++.-+=
T Consensus 57 ~~Ql~g~~~~~----~~~aa~~~~~-~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR 130 (309)
T PF01207_consen 57 IVQLFGNDPED----LAEAAEIVAE-LGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIR 130 (309)
T ss_dssp EEEEE-S-HHH----HHHHHHHHCC-TT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEE
T ss_pred eEEEeeccHHH----HHHHHHhhhc-cCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecc
Confidence 34444444433 3333333433 34788888887888888764 2211 277899999999998754 78999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC
Q 010162 241 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 241 vGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~ 283 (516)
+|+. ++.+++.+.+..+.+.+++.+.++.= |+...+.
T Consensus 131 ~g~~-~~~~~~~~~~~~l~~~G~~~i~vH~R-----t~~q~~~ 167 (309)
T PF01207_consen 131 LGWD-DSPEETIEFARILEDAGVSAITVHGR-----TRKQRYK 167 (309)
T ss_dssp SECT---CHHHHHHHHHHHHTT--EEEEECS------TTCCCT
T ss_pred cccc-cchhHHHHHHHHhhhcccceEEEecC-----chhhcCC
Confidence 9984 67788888999999999988888753 5555554
No 265
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.47 E-value=4.1e+02 Score=24.30 Aligned_cols=136 Identities=14% Similarity=0.153 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC-CCCceEEEeecCCcc-hHHHHHHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF-ILEHLKEIAEVL 186 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~-~~~~~iri~~~~P~~-i~~~l~eL~~l~ 186 (516)
+.+.+.+-++.+.+.|+.-+.+.+ ++++.+.+.... .......++...... ..+.........
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788888999999999999887765 334444333332 111122333222111 222222233333
Q ss_pred cCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 010162 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 265 (516)
Q Consensus 187 ~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~-pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~ 265 (516)
+.+ +..+.+..-.. -.. ..+.+...+.++.+.+.. +++.+..+.+.+.. -+.+.+.+..+.+.+.+++.
T Consensus 76 ~~G--ad~i~v~~~~~-----~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 76 DLG--ADEIDVVINIG-----SLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIAAEAGADF 145 (201)
T ss_pred HcC--CCEEEEeccHH-----HHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCCCE
Confidence 333 45554422110 000 012566677777777654 46777777775543 35677777777777788887
Q ss_pred EEEE
Q 010162 266 VHIS 269 (516)
Q Consensus 266 v~if 269 (516)
+..+
T Consensus 146 iK~~ 149 (201)
T cd00945 146 IKTS 149 (201)
T ss_pred EEeC
Confidence 7644
No 266
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=30.98 E-value=3.6e+02 Score=26.80 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHHH
Q 010162 214 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 293 (516)
Q Consensus 214 ~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~eR 293 (516)
.+.+++.+.++.+.... ++.+..|+=-|| |.+..++.+|++-+.+.+..-+++--- +-|. ..-+-+|.++..+|
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq--~~~~--~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQ--RCGH--GGKQLVSPEEMVAK 125 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESB--STTT--STT-B--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeecc--ccCC--CCCceeCHHHHHHH
Confidence 47899999999999874 789999999999 889999999999999999999988765 3331 11113577776666
Q ss_pred HHHHHHH
Q 010162 294 SRELTSV 300 (516)
Q Consensus 294 ~~~L~~l 300 (516)
.+...+.
T Consensus 126 I~Aa~~a 132 (238)
T PF13714_consen 126 IRAAVDA 132 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655543
No 267
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=30.67 E-value=5.3e+02 Score=28.42 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHc
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 187 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~ 187 (516)
.+++.+++-++.+.+.|+..|.|-|- .+. -.+....++++.+.+.++. .+.+..=+-..+ .+....+...
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt-~G~---l~P~~v~~Lv~~lk~~~~v----pI~~H~Hnt~Gl--A~AN~laAie 219 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDM-AGL---LTPKRAYELVKALKKKFGV----PVEVHSHCTTGL--ASLAYLAAVE 219 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCc-cCC---cCHHHHHHHHHHHHHhcCC----ceEEEecCCCCc--HHHHHHHHHH
Confidence 36899999999999999999998772 222 2223577888888766541 233332111111 1111222234
Q ss_pred CCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 188 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 188 ~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
+| +.+++-.+-. |..+.+.-...+++..++.. |+. +|=+.+.+.+..+++++++
T Consensus 220 aG--ad~vD~sv~~--------~g~gagN~atE~lv~~L~~~--g~~---------tgiDl~~L~~~~~~~~~vr 273 (467)
T PRK14041 220 AG--ADMFDTAISP--------FSMGTSQPPFESMYYAFREN--GKE---------TDFDRKALKFLVEYFTKVR 273 (467)
T ss_pred hC--CCEEEeeccc--------cCCCCCChhHHHHHHHHHhc--CCC---------CCcCHHHHHHHHHHHHHHH
Confidence 44 7788877653 44444445556666666654 432 1234566666666666663
No 268
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.62 E-value=86 Score=28.21 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=22.8
Q ss_pred CHHHHHHHhcCC---CcEEEEccccCcc-hhhhhCCcce-EEcCCC
Q 010162 1 MDTLIAKCKSAK---KPLVVAGCVPQGS-RDLKELEGVS-IVGVQQ 41 (516)
Q Consensus 1 m~~iIr~~k~~~---~~VVV~GC~a~~~-~~~~~~p~vD-vvG~~~ 41 (516)
|..+++++++.+ .+|++||-.+... ++++++ ++| +++.+.
T Consensus 70 ~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~-Gvd~~~~~gt 114 (132)
T TIGR00640 70 VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEM-GVAEIFGPGT 114 (132)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHC-CCCEEECCCC
Confidence 345667776653 3577777555432 334443 677 766654
No 269
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=30.39 E-value=1.8e+02 Score=31.22 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=31.0
Q ss_pred EEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeeccc
Q 010162 330 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ 374 (516)
Q Consensus 330 ~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~~ 374 (516)
+||.. ...++|+ ...+|+.|.|+|++.......|++++....
T Consensus 8 v~~~~-~~~vfV~--~~lpGe~v~~~i~~~~~~~~~~~~~~i~~~ 49 (431)
T TIGR00479 8 VARFN-GKVVFVP--NALPGEKVEVRVTKVKRQYALARVKKIREP 49 (431)
T ss_pred EEEEC-CEEEEeC--CCCCCCEEEEEEEEecCceeEEEeeeecCC
Confidence 46653 3456664 467999999999998877889988876544
No 270
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.37 E-value=5.3e+02 Score=25.23 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-+.-.+-+|++.+.+.|+..+. +.|++|-.. -..+ .+.++.+.+... +....+.+...+|...-+.+
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-~tfg---~~~i~~i~~~~~-~~~~dvHLMv~~p~~~i~~~----- 77 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-LTFG---APICKALRDYGI-TAPIDVHLMVKPVDRIIPDF----- 77 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-cccC---HHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHH-----
Confidence 44667889999999998887755 455444311 0111 455666654311 11256777767775543333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
.+.+ ..++.+-+|+. .+..+.++.+|+. |+... +-+. |+-..+.+... +..+ |
T Consensus 78 -~~~g--ad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~G--laln-P~Tp~~~i~~~---l~~~--D 130 (220)
T PRK08883 78 -AKAG--ASMITFHVEAS--------------EHVDRTLQLIKEH--GCQAG--VVLN-PATPLHHLEYI---MDKV--D 130 (220)
T ss_pred -HHhC--CCEEEEcccCc--------------ccHHHHHHHHHHc--CCcEE--EEeC-CCCCHHHHHHH---HHhC--C
Confidence 2233 67888888863 2356788999998 86543 3333 55555555433 3333 5
Q ss_pred eEEEEEeeecCCCccccC
Q 010162 265 QVHISQFYPRPGTPAARM 282 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~~~ 282 (516)
.+-+ ++..||+--.++
T Consensus 131 ~vlv--MtV~PGfgGq~f 146 (220)
T PRK08883 131 LILL--MSVNPGFGGQSF 146 (220)
T ss_pred eEEE--EEecCCCCCcee
Confidence 5544 577888866544
No 271
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.58 E-value=3.3e+02 Score=28.40 Aligned_cols=94 Identities=9% Similarity=0.026 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcC
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~ 188 (516)
++++.+++++.+.++|++.+.+--+ .+....-.+.++++.+.++. ...+++..-..-...+.+.-+.++...
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg------~~~~~~d~~~v~air~~~g~--~~~l~vDaN~~~~~~~A~~~~~~l~~~ 212 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIG------YPTADEDLAVVRSIRQAVGD--GVGLMVDYNQSLTVPEAIERGQALDQE 212 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcC------CCChHhHHHHHHHHHHhhCC--CCEEEEeCCCCcCHHHHHHHHHHHHcC
Confidence 4788999999999999988766321 11011235677888776643 345666532222222222222233222
Q ss_pred CCCccEEEecccCCCHHHHHhcCC
Q 010162 189 PCVYSFLHVPVQSGSDAVLSAMNR 212 (516)
Q Consensus 189 ~~~~~~i~iGlQSgsd~vLk~MnR 212 (516)
...++.=|+...+.+.++.+++
T Consensus 213 --~i~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 213 --GLTWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred --CCCEEECCCCCcCHHHHHHHHH
Confidence 3678999998877776666554
No 272
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.36 E-value=2.3e+02 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
..+++.+++.++.+.+.|...|.+.|. . |.-.+..+.++++.+.+.++
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~---G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDS-A---GAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccC-C---CCCCHHHHHHHHHHHHHhCC
Confidence 358899999999999999999999873 2 32223347778888876554
No 273
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.90 E-value=1.1e+02 Score=27.69 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHhcC---CCcEEEEccccCc---ch----hhhhCCcce-EEc-CCChhHHHHHHHHH
Q 010162 2 DTLIAKCKSA---KKPLVVAGCVPQG---SR----DLKELEGVS-IVG-VQQIDRVVEVVEET 52 (516)
Q Consensus 2 ~~iIr~~k~~---~~~VVV~GC~a~~---~~----~~~~~p~vD-vvG-~~~~~~i~~ll~~~ 52 (516)
..+++++++. +.+|++||-.+.. .+ .++++ ++| |++ +...+.+.+.|++.
T Consensus 72 ~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~-G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 72 RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM-GFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc-CCCEEECcCCCHHHHHHHHHHH
Confidence 4556666554 4568888865322 11 24454 477 666 44556666666554
No 274
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=28.56 E-value=6.6e+02 Score=25.77 Aligned_cols=105 Identities=14% Similarity=0.310 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-------cCCcchHHHHH
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-------TNPPFILEHLK 180 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-------~~P~~i~~~l~ 180 (516)
.+++++++.++..-+.|+..+++.+ +++.+ + ..-++-.+.... .+|++++ -+|..+-+...
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~--~----~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR--N----VYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc--C----HHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688999998888788999998876 33222 1 233445554332 3566654 13333333333
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCC--CHHHHHHHHHHHHHh
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 229 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~--t~e~~~~~I~~lr~~ 229 (516)
.|.. +..+ ++.+|+=+|++.....++.+. ..+.+.+.++.+++.
T Consensus 77 tLd~-ls~G----R~~lGlg~G~~~~~~~~G~~~~~~~~~~~E~v~iir~l 122 (325)
T TIGR03555 77 TLDE-ISGG----RAVLGIGPGDKATFDAMGIEWVKPLTTIREAIEVIRQL 122 (325)
T ss_pred HHHH-HcCC----CEEEEecCCcHHHHHHcCCCcCchHHHHHHHHHHHHHH
Confidence 2332 2233 677888888877777776543 456667777777765
No 275
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=28.51 E-value=9e+02 Score=27.31 Aligned_cols=141 Identities=10% Similarity=-0.041 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCC---cchHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFILEHLKEI 182 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P---~~i~~~l~eL 182 (516)
.+.+.++=++-++.|.+.|+++|-.. +++.+.. -.+.++++.+..... ...++..+.+ .+++.. +
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~G---fp~~s~~----D~e~v~~i~~~~l~~--~~~~i~al~~~~~~did~a---~ 110 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVG---FPSASQT----DFDFVREIIEQGAIP--DDVTIQVLTQSREELIERT---F 110 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHhcCCC--CCcEEEEEcCCchhhHHHH---H
Confidence 57899999999999999999999854 3433321 144455554331000 0123322222 222222 2
Q ss_pred HHHHcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCC----EEEEEEEEcCCCC----C-HHH
Q 010162 183 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGM----QIATDIICGFPGE----T-DED 250 (516)
Q Consensus 183 ~~l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi----~i~td~IvGfPGE----T-eed 250 (516)
.++...+ ...+|+-+ |.||-.+ +.+++.. ..+.+.++++.++++ +. .+.+.|.+-|-+| + .+-
T Consensus 111 ~a~~~~~--~~~v~i~~-~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--~~~~~~~~~~~~~v~f~~Ed~~r~d~~~ 185 (564)
T TIGR00970 111 EALSGAK--RATVHFYN-ATSILFREVVFRASRAEVQAIATDGTKLVRKC--TKQAAKYPGTQWRFEYSPESFSDTELEF 185 (564)
T ss_pred HHhcCCC--CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccccccceEEEEEecccCCCCCHHH
Confidence 2211221 34677776 3455444 4566542 445566677777877 43 2455555556566 4 355
Q ss_pred HHHHHHHHHhcCC
Q 010162 251 FNQTVNLIKEYKF 263 (516)
Q Consensus 251 f~etl~fi~el~~ 263 (516)
..+.++.+.+.+.
T Consensus 186 l~~~~~~a~~ag~ 198 (564)
T TIGR00970 186 AKEVCEAVKEVWA 198 (564)
T ss_pred HHHHHHHHHHhCC
Confidence 5566666777654
No 276
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.44 E-value=2e+02 Score=26.85 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
+.+...++.+.+++.+||+.+....- | .-++++-++.++.|.+.++|.+-+..
T Consensus 57 ~~~~~~~~~~~l~~~yP~l~ivg~~~-g--~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 57 SEEVLEKAAANLRRRYPGLRIVGYHH-G--YFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC-C--CCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 45667788899999999987654332 2 12778888999999999999887765
No 277
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.39 E-value=7e+02 Score=26.02 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEee--cCCCCCCCCcC--CCH----HHHHHHHHHhCCCCCCceEEEeecCCcchHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSS--EDTGAYGRDIG--VNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEH 178 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g--~n~~~yg~d~~--~~l----~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~ 178 (516)
.-++++-++-++.+++.|++.+-++- +|....|-... ..| .++++++. +++ ..+-++-+....
T Consensus 104 a~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N-~Lg----IiiDlSH~s~kt---- 174 (313)
T COG2355 104 AEPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMN-ELG----IIIDLSHLSDKT---- 174 (313)
T ss_pred cccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHH-hcC----CEEEecccCCcc----
Confidence 34667777888999999999988874 34433332111 112 35566554 343 234443333222
Q ss_pred HHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC----C--CHHHHH
Q 010162 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG----E--TDEDFN 252 (516)
Q Consensus 179 l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG----E--Teedf~ 252 (516)
..+..++.+.+- + .=+.|.+.|..-.|+.+-+ .++.+++. |=.|...++..|-. . |.+|+.
T Consensus 175 ~~Dvl~~s~~Pv----i---aSHSN~~al~~h~RNl~D~----qlkaI~~~--gGvIgv~~~~~fl~~~~~~~atldd~v 241 (313)
T COG2355 175 FWDVLDLSKAPV----V---ASHSNARALVDHPRNLSDE----QLKAIAET--GGVIGVNFIPAFLRPGGAARATLDDLV 241 (313)
T ss_pred HHHHHhccCCce----E---EecCCchhccCCCCCCCHH----HHHHHHhc--CCEEEEEeehhhccCCCCCCCCHHHHH
Confidence 223333333331 1 1256778888888888744 56777887 76788888877755 3 889999
Q ss_pred HHHHHHHhc-CCCeEEEE
Q 010162 253 QTVNLIKEY-KFPQVHIS 269 (516)
Q Consensus 253 etl~fi~el-~~d~v~if 269 (516)
+-++.+.++ +.+++.+-
T Consensus 242 ~hI~h~v~~~G~dhVglG 259 (313)
T COG2355 242 RHIDHFVELVGIDHVGLG 259 (313)
T ss_pred HHHHHHHHhcCcceeEec
Confidence 999997666 88888875
No 278
>PRK01076 L-rhamnose isomerase; Provisional
Probab=28.29 E-value=4.5e+02 Score=28.41 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=66.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC-------CHHHHHHHHHHHHhcC--CCeEEEEEeeecCCCcc
Q 010162 210 MNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 279 (516)
Q Consensus 210 MnR~~t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGE-------Teedf~etl~fi~el~--~d~v~if~~sp~pGTpa 279 (516)
-+++.+.++.++=+..+.+..||- .++.+++....|+ .+++|...++|.++.+ ++ ++-..|+. |-...
T Consensus 66 pG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~GlglD-fNpn~Fsh-~~~k~ 143 (419)
T PRK01076 66 PGKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLD-FNPTCFSH-PLSAD 143 (419)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCCC-ccccC
Confidence 457789999999999999999987 6888998885443 5599999999999985 45 55555542 22221
Q ss_pred -ccCCCCCHHHHHHHHHHHHHHHH--HH-hhhhcCCCcEE--EEEE
Q 010162 280 -ARMKKVPSAVVKKRSRELTSVFE--AF-TPYLGMEGRVE--RIWI 319 (516)
Q Consensus 280 -~~~~~v~~~~~~eR~~~L~~l~~--~~-~~~~~~vG~~~--~vlv 319 (516)
..+...++++ |..-+....+ ++ .+..+..|..- .+|+
T Consensus 144 G~SLs~pD~~i---R~fwI~H~~~c~~I~~~~g~~lGs~~~~niWi 186 (419)
T PRK01076 144 GFTLSHPDPEI---RQFWIEHCKASRRISAYFGEELGTPCVMNIWI 186 (419)
T ss_pred CCcccCCCHHH---HHHHHHHHHHHHHHHHHHHHHhCCccceeEEe
Confidence 1233444444 2223333332 22 24555667654 5666
No 279
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.21 E-value=8.5e+02 Score=27.35 Aligned_cols=162 Identities=9% Similarity=-0.028 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCC-cc----hHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNP-PF----ILEHLK 180 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-~~P-~~----i~~~l~ 180 (516)
.+.+.+-++-++.+.+.|+.++.|+|-+-...+......+.++++++.+.+.. .+.++- ++. ++ ....+.
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~i----p~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFV----PLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCC----CEEEcCCccccccccccccchHH
Confidence 45667778888888899999999999754322222222367888888875432 233331 111 00 112233
Q ss_pred HHHHHHcCCCCccEEEecccCCCH--HHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC---------------
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSD--AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF--------------- 243 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd--~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf--------------- 243 (516)
.+.++++.+ +..+.||-....+ +.+ .-.+..+.+-+.++.+.+-+. -+.+..|.-=|.
T Consensus 339 ~~~~~l~~G--adkV~i~s~Av~~~~~~~-~~~~~~~p~~i~~~~~~fg~q--~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 339 VASEYFRSG--ADKISIGSDAVYAAEEYI-ASGVKTGKTSIEQISRVYGNQ--AVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred HHHHHHHcC--CCEEEEChHHHhChhhhh-ccccccCHHHHHHHHHHcCCc--eEEEEEecCcCcccCcccccccccccc
Confidence 455556665 7888887433221 111 112444444444444433211 145555543221
Q ss_pred -------------------CCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 244 -------------------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 244 -------------------PGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
--.|.-+..+.++.+++++...+- +.-.-+.||.
T Consensus 414 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil-~t~id~DGt~ 466 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEIL-LNCIDCDGQG 466 (538)
T ss_pred ccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEE-Eeeccccccc
Confidence 112345666777777777776553 3445677773
No 280
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=28.01 E-value=1.9e+02 Score=31.32 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=55.0
Q ss_pred ccCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhC--CC--CEEEEEEEEcCCCC--C-HHHHHHHHHHHH---hcCCCeEE
Q 010162 199 VQSGSDAVLSAMN-REYTLSDFRTVVDTLIELV--PG--MQIATDIICGFPGE--T-DEDFNQTVNLIK---EYKFPQVH 267 (516)
Q Consensus 199 lQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~--pG--i~i~td~IvGfPGE--T-eedf~etl~fi~---el~~d~v~ 267 (516)
+|+.++.|=..=+ -|.+..+|.+.+..+.+.. |. +.+..|=.==.|.+ . ++.+...-+.+. +.+|+.+|
T Consensus 46 iEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIH 125 (424)
T PF08013_consen 46 IEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIH 125 (424)
T ss_dssp EEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEE
T ss_pred EEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEe
Confidence 4555555432210 1348899999999998862 22 23444443112222 2 244444444444 44999999
Q ss_pred EEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHH
Q 010162 268 ISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304 (516)
Q Consensus 268 if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~ 304 (516)
+-+-..--|-| ..+++++..+|..+|.+..++.
T Consensus 126 LD~Sm~ca~d~----~~L~d~~vA~Raa~L~~~aE~~ 158 (424)
T PF08013_consen 126 LDCSMDCAGDP----KPLPDETVAERAARLCEVAEEA 158 (424)
T ss_dssp E---C--CTS-----SC--HHHHHHHHHHHHHHHHCC
T ss_pred ecCCCCCCCCC----CCCChHHHHHHHHHHHHHHHHH
Confidence 98755544444 3789999999999999999864
No 281
>PRK01254 hypothetical protein; Provisional
Probab=27.94 E-value=80 Score=36.28 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHhc--CCCcEEEEccccCcc------------h-hhhhCCcce--EEcCCChhHHHHHHHHHhcCCc
Q 010162 4 LIAKCKS--AKKPLVVAGCVPQGS------------R-DLKELEGVS--IVGVQQIDRVVEVVEETLKGHE 57 (516)
Q Consensus 4 iIr~~k~--~~~~VVV~GC~a~~~------------~-~~~~~p~vD--vvG~~~~~~i~~ll~~~~~g~~ 57 (516)
+.+.+|+ ++.+||+||..|+.. . .+..-..+| |.|.+|. .++++.+.+..|..
T Consensus 139 y~~~~r~~f~~~pvilGGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE~-~i~e~a~~l~~g~~ 208 (707)
T PRK01254 139 YTQRCKEAYKDVPVILGGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAER-PLVEVAHRLAMGEP 208 (707)
T ss_pred HHHHHHHHCCCCCEEeccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccHH-HHHHHHHHHHcCCC
Confidence 3445555 688999999999953 1 111223578 5788874 89999988776664
No 282
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=27.81 E-value=3.7e+02 Score=29.01 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=50.6
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC-------CHHHHHHHHHHHHhcC--CCeEEEEEee
Q 010162 208 SAMNREYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGE-------TDEDFNQTVNLIKEYK--FPQVHISQFY 272 (516)
Q Consensus 208 k~MnR~~t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGE-------Teedf~etl~fi~el~--~d~v~if~~s 272 (516)
..-+|+-+.++.++=+..+.+..||- .++.+++.+..++ .+++|...++|.++.+ ++ ++-..|+
T Consensus 60 n~PG~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~glglD-fNpn~Fs 133 (414)
T TIGR01748 60 NYPGKARTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLD-FNPTCFS 133 (414)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCC
Confidence 34467789999999999999999987 7899999975442 5699999999999985 45 5555554
No 283
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=27.79 E-value=1.8e+02 Score=31.21 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeec
Q 010162 214 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 274 (516)
Q Consensus 214 ~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~ 274 (516)
+..+.+++.+..+++.+|+..+-+.++- +.+.+++.+.++.+++.+.|.+.+....|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~---~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIME---EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccC---CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4678888888888877777677666652 268999999999999999999998887775
No 284
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=27.77 E-value=1.2e+02 Score=29.87 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCcc
Q 010162 114 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 193 (516)
Q Consensus 114 v~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~ 193 (516)
++-++.+.+.|+++++++|-|-...|.. ...++++++.+..+ ..+.++-.-. . .+. +..++..+ +.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa~~g~~---~n~~~i~~i~~~~~----~~i~vgGGIr-s-~ed---~~~ll~~G--a~ 97 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAAKEGRG---SNLELIKEIAKETG----IPIQVGGGIR-S-IED---AERLLDAG--AD 97 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHHCCTHH---HHHHHHHHHHHHSS----SEEEEESSE--S-HHH---HHHHHHTT---S
T ss_pred HHHHHHHHHcCCCEEEEEEccCcccCch---hHHHHHHHHHhcCC----ccEEEeCccC-c-HHH---HHHHHHhC--CC
Confidence 3344556678999999999654333332 24677888877644 3445542110 1 122 33334444 67
Q ss_pred EEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc----CCC---CCHHHHHHHHHHHHhcCCCeE
Q 010162 194 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG----FPG---ETDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 194 ~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvG----fPG---ETeedf~etl~fi~el~~d~v 266 (516)
++.+|-.+..+ .+-+.++.+..-.. .+.+..|+.-| ..| .|.-+..+.++.+.+.++..+
T Consensus 98 ~Vvigt~~~~~-----------~~~l~~~~~~~g~~--~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 98 RVVIGTEALED-----------PELLEELAERYGSQ--RIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp EEEESHHHHHC-----------CHHHHHHHHHHGGG--GEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred EEEeChHHhhc-----------hhHHHHHHHHcCcc--cEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 88888654321 12233333333332 36778887776 222 234678888999999998877
Q ss_pred EEEEeeecCCCc
Q 010162 267 HISQFYPRPGTP 278 (516)
Q Consensus 267 ~if~~sp~pGTp 278 (516)
++.-..+.||-
T Consensus 165 -i~tdi~~dGt~ 175 (229)
T PF00977_consen 165 -ILTDIDRDGTM 175 (229)
T ss_dssp -EEEETTTTTTS
T ss_pred -EEeeccccCCc
Confidence 44555677874
No 285
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=27.67 E-value=3.7e+02 Score=25.88 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=35.4
Q ss_pred EEEecccCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH----HHHHHHHHHhc
Q 010162 194 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 261 (516)
Q Consensus 194 ~i~iGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeed----f~etl~fi~el 261 (516)
.+++-+.+|.+ |+| |.+.+++.+.++.+.+. |++.+..-+..+-..++.+. ++..++++.++
T Consensus 118 ~v~lkvdtG~~-----~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 118 DVLVQVNIGGE-----ESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred cEEEEEecCCC-----CCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 47777777721 466 67778888888877664 66654433333333344444 44444444444
No 286
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=27.45 E-value=4.8e+02 Score=25.78 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcC
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 188 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~ 188 (516)
++++..++++.+.+.|++.+.+=-. .+. ..-.+.++++.+.++. ...+++.. |...-.+...++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg------~~~-~~d~~~v~~vr~~~g~--~~~l~vDa-n~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVG------RDP-ARDVAVVAALREAVGD--DAELRVDA-NRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecC------CCH-HHHHHHHHHHHHhcCC--CCEEEEeC-CCCcCHHHHHHHHHHHHh
Confidence 5788999999999999998876321 110 1235677777766653 24666663 221112333333333322
Q ss_pred CCCccEEEecccCCCH
Q 010162 189 PCVYSFLHVPVQSGSD 204 (516)
Q Consensus 189 ~~~~~~i~iGlQSgsd 204 (516)
....++.-|+...+.
T Consensus 155 -~~i~~iEeP~~~~d~ 169 (265)
T cd03315 155 -LGLDYVEQPLPADDL 169 (265)
T ss_pred -cCCCEEECCCCcccH
Confidence 126788887755433
No 287
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=27.42 E-value=34 Score=36.89 Aligned_cols=17 Identities=35% Similarity=0.923 Sum_probs=14.7
Q ss_pred CCCCCCCCcCcccCccC
Q 010162 86 NVGCLGACTYCKTKHAR 102 (516)
Q Consensus 86 srGC~~~CsFC~ip~~r 102 (516)
+-||+.+|.||..|..+
T Consensus 6 ~~gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCCCcCCCCCCCCCC
Confidence 57999999999998763
No 288
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.27 E-value=2.6e+02 Score=25.17 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC-CCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 214 YTLSDFRTVVDTLIELVPGMQIATDIICGFPG-ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 214 ~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG-ETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
++...+.+.++.+++. +.. ..-+++|-.- -.+.+..+..+.+++++++.+ |. |||++.
T Consensus 66 ~~~~~~~~~~~~L~~~--~~~-~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v--f~----~~~~~~ 124 (137)
T PRK02261 66 HGEIDCRGLREKCIEA--GLG-DILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV--FP----PGTDPE 124 (137)
T ss_pred cCHHHHHHHHHHHHhc--CCC-CCeEEEECCCCCCccChHHHHHHHHHcCCCEE--EC----cCCCHH
Confidence 4667888999999998 332 2346666533 345667778888999998754 33 567543
No 289
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=27.26 E-value=3e+02 Score=26.60 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=35.6
Q ss_pred CcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEE
Q 010162 312 GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 368 (516)
Q Consensus 312 G~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~ 368 (516)
|...++-|+..+.+|. -+++..+ ..++++ ...+|+.|.++|+........|.+
T Consensus 148 ~e~~~v~Ie~l~~~G~-GVak~~g-~~vfV~--galpGE~V~vri~k~kk~~~~a~~ 200 (201)
T PRK12336 148 GKTYEVEITGTGRKGD-GVAKKGK-YTIFVP--GAKKGEVVKVKIKKISGNLAFAER 200 (201)
T ss_pred CCEEEEEEEEccCCCc-eEEEECC-EEEEeC--CCCCCCEEEEEEEEecCCceeEEe
Confidence 5566777877654442 3566544 456664 456899999999998766555643
No 290
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=26.78 E-value=79 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=11.7
Q ss_pred EeeecCCCccccCCCCCHHHHHHHH
Q 010162 270 QFYPRPGTPAARMKKVPSAVVKKRS 294 (516)
Q Consensus 270 ~~sp~pGTpa~~~~~v~~~~~~eR~ 294 (516)
.|.|.+|||+...+.+++++..+-.
T Consensus 4 ~l~P~~Gtpl~~~~~l~~~e~lr~i 28 (93)
T PF06968_consen 4 FLRPIPGTPLEDPPPLSDEEFLRII 28 (93)
T ss_dssp E----TTSTTTTS----HHHHHHHH
T ss_pred eEEeCCCCCCCCCCCCCHHHHHHHH
Confidence 3899999999877788876644333
No 291
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.62 E-value=2.1e+02 Score=23.71 Aligned_cols=61 Identities=8% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccc
Q 010162 216 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 280 (516)
Q Consensus 216 ~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~ 280 (516)
.+.+.+..+.+++..|+..+..-|+=+ +.-++.+.++.+.+.+.+++.+.+|.-.+|.-..
T Consensus 15 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 75 (101)
T cd03416 15 AEALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVK 75 (101)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccc
Confidence 356778888888887666676666633 3456777788888889999999999999997543
No 292
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=26.22 E-value=3.7e+02 Score=29.04 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 202 GSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 202 gsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
.||+-++.+++ +...+.+.+++++++++ +- .|..|++..+|.+ +.-++..+-+.+.
T Consensus 67 IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~--qp~aIgLDi~r~~P~~--~~~~~La~~~~~~ 124 (400)
T COG4252 67 IDEQDLESLGQWPWPRAALARLLDKLAAA--QPRAIGLDIYRDLPSS--PGDRALAAVLQRA 124 (400)
T ss_pred ecHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCcEEEEEEeecCCCC--cccHHHHHHhccC
Confidence 48888999998 78999999999999999 54 7999999999986 3444444555544
No 293
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=26.03 E-value=9.2e+02 Score=26.60 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=62.4
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCH---HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTL---SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 268 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~---e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~i 268 (516)
+..+...+...+...|+.+.|+... |.+++.++.+++.-.--.++..+.=|+ +-+|..+-.+++..-.++.+.+
T Consensus 403 vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fieV 479 (601)
T KOG1160|consen 403 VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIEV 479 (601)
T ss_pred hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccc---cccccHHHHHHHhccCCceEEE
Confidence 4456677778899999999999753 445555555655412224555555444 5567777778888888887776
Q ss_pred EEeeecCCCccccC--CCCCH-HHHHHHHHHHHHH
Q 010162 269 SQFYPRPGTPAARM--KKVPS-AVVKKRSRELTSV 300 (516)
Q Consensus 269 f~~sp~pGTpa~~~--~~v~~-~~~~eR~~~L~~l 300 (516)
---+---.+.+.++ ..+|- ++..+...+|.++
T Consensus 480 kGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l 514 (601)
T KOG1160|consen 480 KGVTYCGESELSNLTMTNVPWHEEVVEFVFELVDL 514 (601)
T ss_pred eceeEecccccCcccccCccHHHHHHHHHHHHHHh
Confidence 54333333334433 34442 3334444555333
No 294
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=25.69 E-value=7.2e+02 Score=25.30 Aligned_cols=109 Identities=9% Similarity=0.006 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-------cCCcchHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-------TNPPFILEHLKE 181 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-------~~P~~i~~~l~e 181 (516)
..+++++.++..-+.|+..+++.+..+..|+.- ..-.-++-.+.... .+|++++ -+|..+.+...-
T Consensus 20 ~~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~~--~~p~~~la~lA~~T-----~rI~lgt~v~~~~~~~P~~~Ae~~at 92 (315)
T cd01096 20 VLDRMVDTGVLVDKLNFDTALVLEHHFSENGIV--GAPLTAAAFLLGLT-----ERLNVGSLNQVITTHHPVRIAEEALL 92 (315)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccCCCCCC--CCHHHHHHHHHHhc-----CEeEeeeeeeccCccCHHHHHHHHHH
Confidence 356667777666667999999877556555421 12334444454332 4566663 234444444332
Q ss_pred HHHHHcCCCCccEEEecccCCCHH-HHHhcCCCC--CHHHHHHHHHHHHHh
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIEL 229 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~-vLk~MnR~~--t~e~~~~~I~~lr~~ 229 (516)
|. .+..+ ++.+|+=+|... ....++.+. ..+.+.+.++.+++.
T Consensus 93 LD-~lS~G----R~~lGvg~G~~~~e~~~~G~~~~~~~~~~~E~l~~l~~l 138 (315)
T cd01096 93 LD-QMSKG----RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIINDA 138 (315)
T ss_pred HH-HHcCC----CeEEEeeCCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 32 23333 577888777643 466677654 334466666666665
No 295
>PRK03739 2-isopropylmalate synthase; Validated
Probab=25.62 E-value=9.9e+02 Score=26.87 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~-i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
.+.+.++=++-++.|.+.|+++|-.. ++..+.. -.+.++.|.+. +..+ ... +..+.+.. ...+....+
T Consensus 47 v~~s~~~Ki~ia~~L~~~GV~~IE~G---fP~~s~~----e~e~v~~i~~~~~~~~-~~~--i~~l~r~~-~~di~~a~~ 115 (552)
T PRK03739 47 EPMSPERKLRMFDLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEGLIPD-DVT--IQVLTQAR-EHLIERTFE 115 (552)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE---CCCcChH----HHHHHHHHHHhcCCCC-CCE--EEEEeccc-hhHHHHHHH
Confidence 57889999999999999999999864 4444332 24667777543 2001 122 22222211 111221111
Q ss_pred HHcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCC----CH-HHHHHHH
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGM-QIATDIICGFPGE----TD-EDFNQTV 255 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGE----Te-edf~etl 255 (516)
... +.....+|+-+ +.||..+ +.+++.. ..+.+.++++.+++. +. ...+.+-+-|-+| ++ +-+.+.+
T Consensus 116 a~~-~~~~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--~~~~~~~~~~v~f~~EDasR~d~~~l~~~~ 191 (552)
T PRK03739 116 ALE-GAKRAIVHLYN-STSPLQRRVVFGKDRDGIKAIAVDGARLVKEL--AAKYPETEWRFEYSPESFTGTELDFALEVC 191 (552)
T ss_pred Hhc-CCCCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceeEEEEecccCCCCCHHHHHHHH
Confidence 111 21234677766 4455544 4566532 445567777788877 53 2233344555556 33 3344444
Q ss_pred HHHHh
Q 010162 256 NLIKE 260 (516)
Q Consensus 256 ~fi~e 260 (516)
+.+.+
T Consensus 192 ~~a~~ 196 (552)
T PRK03739 192 DAVID 196 (552)
T ss_pred HHHHH
Confidence 44443
No 296
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=25.60 E-value=8.8e+02 Score=26.23 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH-HHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK-EIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~-eL~~ 184 (516)
.+.++++-++-++.|.+.|++.|-......+. .-.+.++.+....+ . ....... ......+ .+.+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~~---~---~~~~~~~-~~~~~~~~~~ea 84 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKAG---L---FICALIA-ALARAIKRDIEA 84 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhcC---c---ccchhhh-hhHHhHHhhHHH
Confidence 57899999999999999999999765432221 12445555542211 1 1111111 1111222 3445
Q ss_pred HHcCCCCccEEEecccCCCHHHHH-hcC--CCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLS-AMN--REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk-~Mn--R~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+...+ ...+|+=+-+ ||--++ .++ +....+.+.+.++.+++. |+.+..+..-.+ .-+++.+.+.++.+.+.
T Consensus 85 ~~~a~--~~~i~if~~t-Sd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 85 LLEAG--VDRIHIFIAT-SDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIEA 158 (409)
T ss_pred HHhCC--CCEEEEEEcC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHHc
Confidence 45554 4566665533 444333 344 334567778888999999 888887777666 55677777888888877
Q ss_pred CCCeEEE
Q 010162 262 KFPQVHI 268 (516)
Q Consensus 262 ~~d~v~i 268 (516)
+.+.+++
T Consensus 159 ga~~i~l 165 (409)
T COG0119 159 GADRINL 165 (409)
T ss_pred CCcEEEE
Confidence 7776654
No 297
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=25.57 E-value=67 Score=26.98 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEeeecCCCccccC-CCCCHHHH
Q 010162 268 ISQFYPRPGTPAARM-KKVPSAVV 290 (516)
Q Consensus 268 if~~sp~pGTpa~~~-~~v~~~~~ 290 (516)
+..|.|.||||+++. +.++.++.
T Consensus 2 in~l~P~~gTp~~~~~~~~~~~~~ 25 (94)
T smart00876 2 INRLRPIEGTPLEDPPPPVSPEEF 25 (94)
T ss_pred CCccccCCCCCcccCCCCCCHHHH
Confidence 346889999999887 56776653
No 298
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.95 E-value=4.7e+02 Score=28.42 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=67.6
Q ss_pred ecccCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC------C--C-HHHHHHHHHHHH---hcCC
Q 010162 197 VPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDIICGFPG------E--T-DEDFNQTVNLIK---EYKF 263 (516)
Q Consensus 197 iGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG------E--T-eedf~etl~fi~---el~~ 263 (516)
+-+|+.++.|=..=+ -|.|..+|.+.|..+.+.. |+... -+|+|-.. + . ++.+....+.+. +.+|
T Consensus 44 vLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~-gf~~~-~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF 121 (426)
T PRK15458 44 LLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSL-NFPQE-ALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGF 121 (426)
T ss_pred EEEEeccccccccCCcCCCCHHHHHHHHHHHHHHc-CCChh-hEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 335666666543311 2458999999999988752 33222 45665432 2 1 345555555554 4499
Q ss_pred CeEEEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHH
Q 010162 264 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 304 (516)
Q Consensus 264 d~v~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~ 304 (516)
+.+|+-+-..-.|.| ..+++++..+|..+|.+..++.
T Consensus 122 ~kIHLD~Sm~cagdp----~pL~d~~vA~Raa~L~~~aE~~ 158 (426)
T PRK15458 122 KKIHLDCSMSCADDP----IPLTDEIVAERAARLAKIAEET 158 (426)
T ss_pred ceEEecCCCCCCCCC----CCCChHHHHHHHHHHHHHHHHH
Confidence 999998877766665 3688999999999999988764
No 299
>PRK10425 DNase TatD; Provisional
Probab=24.64 E-value=5e+02 Score=25.99 Aligned_cols=134 Identities=15% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchH----HHHHHHH
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL----EHLKEIA 183 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~----~~l~eL~ 183 (516)
.+.++++++. .+.|+..+..++.+... ..+ ..++.+..+ ..+..++ +||.... +.+..+.
T Consensus 15 ~d~~~vl~~a---~~~gv~~~i~~~~~~~~--------~~~-~~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~~~l~ 78 (258)
T PRK10425 15 KDRDDVVARA---FAAGVNGMLITGTNLRE--------SQQ-AQKLARQYP---SCWSTAG-VHPHDSSQWQAATEEAII 78 (258)
T ss_pred ccHHHHHHHH---HHCCCCEEEEeCCCHHH--------HHH-HHHHHHhCC---CEEEEEE-eCcCccccCCHHHHHHHH
Confidence 3566666654 45688888877743222 222 233444333 1344455 7775542 3344444
Q ss_pred HHHcCCCCccEE-EecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 184 EVLRHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 184 ~l~~~~~~~~~i-~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
.+...+. +..| .+|+.=.-+. -.+..-.+-+...++.+++. +..+..+.- +.++++++.+++..
T Consensus 79 ~~~~~~~-~vaIGEiGLDy~~~~----~~~~~Q~~vF~~ql~lA~~~--~~Pv~iH~r--------~a~~~~l~iL~~~~ 143 (258)
T PRK10425 79 ELAAQPE-VVAIGECGLDFNRNF----STPEEQERAFVAQLAIAAEL--NMPVFMHCR--------DAHERFMALLEPWL 143 (258)
T ss_pred HhccCCC-EEEEeeeeeccccCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEEe--------CchHHHHHHHHHhc
Confidence 4444432 3344 4666533110 00111224567777888887 766655543 23355556666531
Q ss_pred --CCeEEEEEee
Q 010162 263 --FPQVHISQFY 272 (516)
Q Consensus 263 --~d~v~if~~s 272 (516)
.....++.|+
T Consensus 144 ~~~~~~i~H~fs 155 (258)
T PRK10425 144 DKLPGAVLHCFT 155 (258)
T ss_pred cCCCCeEEEecC
Confidence 1234455544
No 300
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.33 E-value=2.3e+02 Score=25.06 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEcC-------CCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 217 SDFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 217 e~~~~~I~~lr~~~pGi~i~td~IvGf-------PGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
+.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.+.+++-+.++...||-
T Consensus 17 ~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~ 84 (127)
T cd03412 17 KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGE 84 (127)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcH
Confidence 455666666667777766666555200 0122345566777777777777777777777774
No 301
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.27 E-value=7.5e+02 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=16.9
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~~d~v~if 269 (516)
+..=+|..+|-|..+++ .+.+++.+++.+.+-
T Consensus 116 vdGlIipDLP~ee~~~~---~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 116 VDGLIIPDLPPEESEEL---REAAKKHGLDLIPLV 147 (259)
T ss_dssp EEEEEETTSBGGGHHHH---HHHHHHTT-EEEEEE
T ss_pred CCEEEEcCCChHHHHHH---HHHHHHcCCeEEEEE
Confidence 45556666666544444 344666666655443
No 302
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.00 E-value=5.3e+02 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhC-CCCEEEEEEEEcC---CCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 010162 218 DFRTVVDTLIELV-PGMQIATDIICGF---PGETDEDFNQTVNLIKEYKFPQVHISQFY 272 (516)
Q Consensus 218 ~~~~~I~~lr~~~-pGi~i~td~IvGf---PGETeedf~etl~fi~el~~d~v~if~~s 272 (516)
-..+.++.+|+.+ +++.+...+=.+. .|.|.++..+.++.+.+.+++.++++.-.
T Consensus 193 ~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3567888888876 3555555544321 34688999999999999999999987644
No 303
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=23.99 E-value=2.5e+02 Score=29.32 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=39.4
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC----CCC---cCCCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GRD---IGVNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y----g~d---~~~~l~eLL~~I~~~i~ 158 (516)
++...|.+| .+++.+++|++.+.+.|++.+.|.|...... |.. ...-+...++.+.+.++
T Consensus 42 I~smPg~~r-~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 42 IPSMPGVFR-LSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred cCCCCCcee-eCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 444555444 5899999999999999999999998511111 111 01125667777776654
No 304
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.82 E-value=7.3e+02 Score=24.68 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 191 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~ 191 (516)
+.++-++.+.+.|+++++++|-+-...+.. .-.++++++.+... ..+.++- ....+ +. +.++...+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~---~n~~~i~~i~~~~~----~pv~~gG-Gi~s~-~d---~~~l~~~G-- 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE---PNYELIENLASECF----MPLCYGG-GIKTL-EQ---AKKIFSLG-- 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc---ccHHHHHHHHHhCC----CCEEECC-CCCCH-HH---HHHHHHCC--
Confidence 444455667789999999998654432222 24677888876432 1233331 22222 22 22333333
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC-----------CCHHHHHHHHHHHHh
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG-----------ETDEDFNQTVNLIKE 260 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG-----------ETeedf~etl~fi~e 260 (516)
+..+.+|-.... +.+-+.++++.+.+. .+.+..|+--|..| .+..+..+.++.+.+
T Consensus 97 ~~~vvigs~~~~-----------~~~~~~~~~~~~~~~--~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~ 163 (258)
T PRK01033 97 VEKVSINTAALE-----------DPDLITEAAERFGSQ--SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA 163 (258)
T ss_pred CCEEEEChHHhc-----------CHHHHHHHHHHhCCC--cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH
Confidence 677888822111 123333333333211 35677776555211 344456677788888
Q ss_pred cCCCeEEEEEeeecCCC
Q 010162 261 YKFPQVHISQFYPRPGT 277 (516)
Q Consensus 261 l~~d~v~if~~sp~pGT 277 (516)
.+++.+-+... .+.||
T Consensus 164 ~g~~~ii~~~i-~~~G~ 179 (258)
T PRK01033 164 LGAGEILLNSI-DRDGT 179 (258)
T ss_pred cCCCEEEEEcc-CCCCC
Confidence 88887766543 33444
No 305
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=23.11 E-value=38 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 010162 232 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 273 (516)
Q Consensus 232 Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp 273 (516)
|+....|+|+|+++...++.++..++++...-..+.++.|.-
T Consensus 60 GL~p~~DyIig~~~~~l~~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 60 GLEPFFDYIIGIDGGLLDDEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp T--TTTEEEEEETTCE--STCHHHHHHHHTTTS-EEEEEEET
T ss_pred CccccccEEEEccceecCCHHHHHHHHHHcCCCcEEEEEEEC
Confidence 777788999999998777777777888877666777777753
No 306
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=23.00 E-value=1.3e+02 Score=31.38 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=37.0
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-------CCCHHHHHHHHHHhCC
Q 010162 99 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELP 158 (516)
Q Consensus 99 p~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~-------~~~l~eLL~~I~~~i~ 158 (516)
+...|-+| .+++.+++|++.+.+.|++.|.|.|.-........ ..-+.+.++.|.+.++
T Consensus 46 ~smPg~~r-~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 46 SSMPGVYR-YSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp TTSTTEEE-EEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred cCCCCeee-eCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 34445444 48999999999999999999999885112221111 1125677888877765
No 307
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=22.70 E-value=7.4e+02 Score=24.38 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHhcCCCeE
Q 010162 247 TDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 247 Teedf~etl~fi~el~~d~v 266 (516)
..|++.+.++.+++++++.+
T Consensus 114 ~~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 114 PPEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred CHHHHHHHHHHHHHcCCcEE
Confidence 34555566666666665543
No 308
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=22.69 E-value=1e+03 Score=26.11 Aligned_cols=142 Identities=9% Similarity=0.106 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch--HHHHHH
Q 010162 107 SYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKE 181 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i--~~~l~e 181 (516)
.-+.|+|-.-++.|... +...|.|+|+.-+. ..+|.++++...+ .+ ...+.+. ++--.+ +.++
T Consensus 90 Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e-~g---~~hVqin-TnGirlA~~~~~-- 157 (475)
T COG1964 90 EPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIARE-EG---YDHVQLN-TNGIRLAFDPEY-- 157 (475)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhh-cC---ccEEEEc-cCceeeccCHHH--
Confidence 45688888888887765 56789898854332 1347777776543 22 2334333 222111 1122
Q ss_pred HHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEEEcCCCCCHHHHHHHHHHH
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG---MQIATDIICGFPGETDEDFNQTVNLI 258 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG---i~i~td~IvGfPGETeedf~etl~fi 258 (516)
..++..++ .+.+.+.+.-.+++...++ .-++..+++.+++. | +.+...++= |-++.+...-++|.
T Consensus 158 ~~~l~~ag--~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~svVLVptl~r---gvNd~~lG~iirfa 225 (475)
T COG1964 158 VKKLREAG--VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPSVVLVPTLIR---GVNDHELGAIIRFA 225 (475)
T ss_pred HHHHHhcC--CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCcEEEEeehhc---ccChHHHHHHHHHH
Confidence 22333333 7889999999898886666 34555699999998 5 345556664 45778888889997
Q ss_pred HhcC--CCeEEEEEee
Q 010162 259 KEYK--FPQVHISQFY 272 (516)
Q Consensus 259 ~el~--~d~v~if~~s 272 (516)
.+.- ...+++.++|
T Consensus 226 ~~n~dvVrgVnfQPVs 241 (475)
T COG1964 226 LNNIDVVRGVNFQPVS 241 (475)
T ss_pred HhccccccccceEEEE
Confidence 7552 2345555544
No 309
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=22.49 E-value=2.9e+02 Score=28.70 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=39.1
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-------~~l~eLL~~I~~~i~ 158 (516)
++...|-+| .+++.+++|++.+.+.|++.|.|.|. .......+ .-+.+.++.|.+.++
T Consensus 39 I~sMPG~~r-~s~d~l~~~~~~~~~~Gi~~v~LFgv--~~~Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 39 ISSMPGVYR-LSVDSLVEEAEELADLGIRAVILFGI--PEHKDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred cCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCcccccCCCChHHHHHHHHHHhCC
Confidence 344555444 58999999999999999999999985 22211111 125667777776664
No 310
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.43 E-value=1e+03 Score=25.86 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHHhC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHH-HHHHHcCCCCccEE
Q 010162 118 RTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE-IAEVLRHPCVYSFL 195 (516)
Q Consensus 118 ~~L~~~-GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~e-L~~l~~~~~~~~~i 195 (516)
+.+.+. +++.|.+.. .....-..+. -.++++.+.+ .. ..++.+.+-+|.++++...+ +..+.++| +
T Consensus 179 ~~L~~IphV~~IRI~T-R~pvv~P~RI--T~ell~~Lk~-~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aG-----I 246 (417)
T TIGR03820 179 TELRAIPHVEVIRIGT-RVPVVLPQRI--TDELVAILKK-HH---PVWLNTHFNHPREITASSKKALAKLADAG-----I 246 (417)
T ss_pred HHHhhcCCCceEEEee-cccccccccc--CHHHHHHHHh-cC---CeEEEEeCCChHhChHHHHHHHHHHHHcC-----C
Confidence 444443 666676644 3333321111 1456665543 22 35777778888888776654 33344443 5
Q ss_pred EecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 196 HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 196 ~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
.++.||. +|+-+| -+.+.+.++.+.+.+. |+...
T Consensus 247 ~l~nQsV---LLkGVN--D~~~~l~~L~~~L~~~--gV~PY 280 (417)
T TIGR03820 247 PLGNQSV---LLAGVN--DCPRIMKKLVHKLVAN--RVRPY 280 (417)
T ss_pred EEEeece---EECCcC--CCHHHHHHHHHHHHHC--CCeec
Confidence 5666663 222222 3667778888888887 76443
No 311
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.39 E-value=2.6e+02 Score=30.15 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCC---CCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGA---YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~---yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
+.++|.+.-+.+.+.|.+--++-+.+... +|........+-.++..+.+...++..+...++---+-+..- +..-
T Consensus 41 ~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMPv~dW~RT~--l~~~ 118 (394)
T TIGR00695 41 EKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMPVLDWTRTD--LFYP 118 (394)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEecccccccccc--Cccc
Q ss_pred HcCCCCccEEEe-cccCCCHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCC---------------
Q 010162 186 LRHPCVYSFLHV-PVQSGSDAVLSAMN--REYTLSDFRTVVDTLIELVPGM--QIATDIICGFPG--------------- 245 (516)
Q Consensus 186 ~~~~~~~~~i~i-GlQSgsd~vLk~Mn--R~~t~e~~~~~I~~lr~~~pGi--~i~td~IvGfPG--------------- 245 (516)
...+....++.. -++..+..+|++-+ ..|+.+...++.+.++...+.. .+..++|.|+||
T Consensus 119 ~~~Ga~al~fd~~~~~~~d~~~l~r~~~~~~~~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpGw~~~~~~~~~~~~~~ 198 (394)
T TIGR00695 119 LPDGSKALRFDKIKFAAFELHILKRPDAEKTYNQEELIRAVEEASDMSEQDIAQLTRNIIAGLPGAEEGYTLDRFKELLA 198 (394)
T ss_pred CCCCceeEeeehhhhhccChHhhhcccccccCCHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCCCCccccHHHHHHHHH
Q ss_pred -----CCHHHHHHHHHHHHhc
Q 010162 246 -----ETDEDFNQTVNLIKEY 261 (516)
Q Consensus 246 -----ETeedf~etl~fi~el 261 (516)
..++-+++...|++++
T Consensus 199 ~y~~i~~e~lwenl~yFL~~V 219 (394)
T TIGR00695 199 AYKDIDEEKLRDNLAFFLQEI 219 (394)
T ss_pred HhcCCCHHHHHHHHHHHHHHH
No 312
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.30 E-value=2.8e+02 Score=23.64 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
..+.+.+..+.+++..++..+.+-|+- .++-++.+.++.+.+.+.+.+.+.+|.-.+|-
T Consensus 15 ~~~~~~~l~~~l~~~~~~~~v~~afle----~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~ 73 (117)
T cd03414 15 ANADVAKIARLLEEGTGFARVETAFAA----ATRPSLPEALERLRALGARRVVVLPYLLFTGV 73 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEec----CCCCCHHHHHHHHHHcCCCEEEEEechhcCCc
Confidence 346778888888877665666666663 23346888888888889999999999988885
No 313
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=22.22 E-value=3e+02 Score=28.71 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=39.6
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC-----CCC---cCCCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD---IGVNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y-----g~d---~~~~l~eLL~~I~~~i~ 158 (516)
++...|-+| .+++.+++|++.+.+.|++.|.|.|...... |.. ...-+.+.++.|.+.++
T Consensus 39 I~smPG~~r-~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p 106 (320)
T cd04824 39 IDSLPGINR-YGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP 106 (320)
T ss_pred cCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCC
Confidence 344545444 5899999999999999999999998521111 111 01125677788876665
No 314
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.19 E-value=46 Score=21.25 Aligned_cols=12 Identities=33% Similarity=0.864 Sum_probs=10.2
Q ss_pred chhhHHHHhhhc
Q 010162 444 QNVIGWLLRKRK 455 (516)
Q Consensus 444 ~~~~~~~~~~~~ 455 (516)
++||.|+-+||+
T Consensus 14 P~lISWIK~kr~ 25 (26)
T PF01372_consen 14 PTLISWIKNKRQ 25 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 679999999885
No 315
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.14 E-value=7.5e+02 Score=24.18 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~--l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-++-.+-+|++.+.+.|+..+. +.|++|-. +... =.+.+++|.+..+. ....+.+...+|. ..+ ..
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvp---n~~~-G~~~v~~lr~~~~~-~~lDvHLm~~~p~---~~i---~~ 83 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWLHVDVMDGHFVP---NLSF-GPPVVKSLRKHLPN-TFLDCHLMVSNPE---KWV---DD 83 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCccCC---CcCc-CHHHHHHHHhcCCC-CCEEEEECCCCHH---HHH---HH
Confidence 44677899999999999977755 44544421 1111 14566777543321 1123444323332 222 22
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
+.+.+ ..++.+-.|+... ...++++.+++. |..+...+. |.-+.+++... +..-.+|
T Consensus 84 ~~~~G--ad~itvH~ea~~~-------------~~~~~l~~ik~~--G~~~gval~---p~t~~e~l~~~---l~~~~vD 140 (228)
T PTZ00170 84 FAKAG--ASQFTFHIEATED-------------DPKAVARKIREA--GMKVGVAIK---PKTPVEVLFPL---IDTDLVD 140 (228)
T ss_pred HHHcC--CCEEEEeccCCch-------------HHHHHHHHHHHC--CCeEEEEEC---CCCCHHHHHHH---Hccchhh
Confidence 23333 6677777776431 256688888888 877765554 55555665433 2112234
Q ss_pred eEEEEEeeecCCCcc
Q 010162 265 QVHISQFYPRPGTPA 279 (516)
Q Consensus 265 ~v~if~~sp~pGTpa 279 (516)
.+- .++..||..-
T Consensus 141 ~Vl--~m~v~pG~~g 153 (228)
T PTZ00170 141 MVL--VMTVEPGFGG 153 (228)
T ss_pred hHH--hhhcccCCCC
Confidence 333 2556677643
No 316
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=21.84 E-value=8.7e+02 Score=24.85 Aligned_cols=106 Identities=17% Similarity=0.319 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-------cCCcchHHHHH
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-------TNPPFILEHLK 180 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-------~~P~~i~~~l~ 180 (516)
.+++++++.++..-+.|+..+++.+ +.+.+ + -.-++-.+.... .+|++++ -+|..+.+...
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~~--~----~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~a 78 (325)
T PRK02271 11 HPVKKIAYLAKLAEDNGFDYAWITD-HYNNR--D----VYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIA 78 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCCC--C----HHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHH
Confidence 3689999999888888999998766 33221 1 233444454332 3566664 13333333332
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCC--CHHHHHHHHHHHHHhC
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 230 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~--t~e~~~~~I~~lr~~~ 230 (516)
.|.. +..+ ++.+|+=+|++..++.++.++ ..+.+.+.++.+++..
T Consensus 79 tLd~-ls~G----R~~lG~G~G~~~~~~~~G~~~~~~~~~~~E~l~ilr~l~ 125 (325)
T PRK02271 79 TLDE-ISGG----RAVLGIGPGDKATLDALGIEWEKPLRTVKEAIEVIRKLW 125 (325)
T ss_pred HHHH-HcCC----CEEEEecCCCHHHHHHcCCCcccHHHHHHHHHHHHHHHh
Confidence 2322 3333 578888889888788887654 3566777777777653
No 317
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.63 E-value=8.8e+02 Score=24.85 Aligned_cols=130 Identities=14% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+-.+.+.+++|++.....|.+.++|-. ++|..... ..+..+.+.|.+.+... ...+.+
T Consensus 82 ~ekS~~~l~~e~~r~~~lG~~~lv~Hp---G~~~~~~~e~~l~~i~~~Ln~~~~~~-~v~i~~----------------- 140 (280)
T COG0648 82 VEKSIERLIDEIDRCEQLGAKLLVFHP---GSYLGQGKEEGLNRIAEALNELLEEE-GVIILL----------------- 140 (280)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECC---ccccCCCHHHHHHHHHHHHHHHhhcc-CCeEEE-----------------
Confidence 566889999999999999999998843 55654321 11222222222211100 011111
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE----EEcCCCCCHHHHHHHHHHHHh
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI----ICGFPGETDEDFNQTVNLIKE 260 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~----IvGfPGETeedf~etl~fi~e 260 (516)
..++.| -++++.+.+++.++++.+.+. ..+.+..|+ =.|+.--|+++|.+.++.+.+
T Consensus 141 ----------e~~age--------gs~~g~~F~~L~eii~~~~~~-~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~ 201 (280)
T COG0648 141 ----------ENTAGE--------GSGKGTQFGELAEIIDLIEEK-ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDK 201 (280)
T ss_pred ----------EEeccc--------cCccccchhhHHHHHHhhccc-CceEEEEEchhhhhccCCcCcHHHHHHHHHHHHH
Confidence 112222 245677888899999988887 226666665 344544566899999988765
Q ss_pred c-CCCeEEEEEeeecC
Q 010162 261 Y-KFPQVHISQFYPRP 275 (516)
Q Consensus 261 l-~~d~v~if~~sp~p 275 (516)
. +++++....++--.
T Consensus 202 ~~G~~~~~~~Hlndsk 217 (280)
T COG0648 202 VLGLEYLKHIHLNDSK 217 (280)
T ss_pred HhChhhheeEeecCcc
Confidence 4 76655555544433
No 318
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.48 E-value=6e+02 Score=25.59 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+++.+.+-++.+.+.|+..|.|.|. . |.-.+..+.++++.+.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT-~---G~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKDM-A---GLLTPYAAYELVKALKKEVG 192 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC-C---CCCCHHHHHHHHHHHHHhCC
Confidence 47888888889999999999998872 2 22223347778888876543
No 319
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=21.43 E-value=1e+03 Score=26.45 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCC
Q 010162 111 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 190 (516)
Q Consensus 111 e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~ 190 (516)
+.|++.++.+.+.|..-|-+.++-+ .-+. ..+...++.+.+.. ...+.+.+.+|..+...+ +.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st-~p~~---~~v~~~V~~l~~~~----~~pISIDT~~~~v~eaAL-------~aG- 228 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF-DDDP---DVVKEKVKTALDAL----DSPVIADTPTLDELYEAL-------KAG- 228 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC-CCcH---HHHHHHHHHHHhhC----CCcEEEeCCCHHHHHHHH-------HcC-
Confidence 8899999999999998777655322 1111 12566666665432 134666666654332221 122
Q ss_pred CccEEEecccCCC-HHHHH---h-------cC--CCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHHH
Q 010162 191 VYSFLHVPVQSGS-DAVLS---A-------MN--REYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVN 256 (516)
Q Consensus 191 ~~~~i~iGlQSgs-d~vLk---~-------Mn--R~~t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGETeedf~etl~ 256 (516)
...|. .+..++ ++++. . |. .....+.+.+.++.++++ |+ .+-.|=++|+++. .+.++++
T Consensus 229 -AdiIN-sVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL~ 301 (499)
T TIGR00284 229 -ASGVI-MPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESII 301 (499)
T ss_pred -CCEEE-ECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHHH
Confidence 11121 221111 22221 1 11 122347788999999999 99 7889999997532 3666666
Q ss_pred HHHh
Q 010162 257 LIKE 260 (516)
Q Consensus 257 fi~e 260 (516)
.++.
T Consensus 302 ~l~~ 305 (499)
T TIGR00284 302 RFRR 305 (499)
T ss_pred HHHH
Confidence 6653
No 320
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=21.36 E-value=3.1e+02 Score=28.68 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=38.6
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCC
Q 010162 99 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 158 (516)
Q Consensus 99 p~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-------~~l~eLL~~I~~~i~ 158 (516)
+...|.+| .+++.++++++.+.+.|++.|.|.|. .......+ .-+.+.++.|.+.++
T Consensus 48 ~smPg~~r-~s~d~l~~~v~~~~~~Gi~av~LFgv--~~~Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 48 PSMPGVYR-LSIDLLVKEAEEAVELGIPAVALFGV--PELKDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred CCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEeCc--CCCCCcccccccCCCCHHHHHHHHHHHhCC
Confidence 34445444 58999999999999999999999985 22211111 125667777776654
No 321
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=21.31 E-value=1.2e+02 Score=21.55 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=18.8
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHh
Q 010162 483 WGVVDRALLGGMLVSFLIILALLIHVG 509 (516)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
|-++|--..+=.+..+++.+|+++|+.
T Consensus 5 w~v~~p~~~~~~~~~~~~viAl~~H~l 31 (40)
T PF00556_consen 5 WEVHDPRVGLPALFGAFAVIALLAHFL 31 (40)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeCchhhHHHHHHHHHHHHHHHHHH
Confidence 556666655555667778888888865
No 322
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.30 E-value=2.8e+02 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
+.+...++.+.+++.+||+.+... --|+ -..++-.+.++.|.+.++|.+-+.-
T Consensus 55 ~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 55 KPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEEC
Confidence 556777888899999999887653 2222 2234444589999999999887765
No 323
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=21.26 E-value=6.2e+02 Score=25.53 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=48.4
Q ss_pred EEEecccCCCHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCC-HHHHHHHHHHHHhcCCCeEEEE
Q 010162 194 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGET-DEDFNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 194 ~i~iGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pGi-~i~td~IvGfPGET-eedf~etl~fi~el~~d~v~if 269 (516)
-+.+.+ |++.++.+++ +++.+.+-++++.+.+. |. .|..|+++-.|+.+ +++-+...+.+++.+ +.+.+.
T Consensus 43 iviV~I---D~~Sl~~~g~~Pw~R~~~A~ll~~L~~~--ga~~I~~Di~f~~~~~~~~~~D~~la~al~~~~-~~vvl~ 115 (310)
T PF05226_consen 43 IVIVDI---DDESLAELGRWPWPRSVYARLLDRLAAA--GAKAIGFDILFDEPDPSNPEGDQALAEALRRAG-NRVVLA 115 (310)
T ss_pred EEEEEE---CHHHHHHhCCCCCCHHHHHHHHHHHHhC--CCCEEEEEeeecCCCCCCchHHHHHHHHHHhCC-CeEEEE
Confidence 344544 7777777776 67889999999999999 65 78999999988533 234444555566665 334433
No 324
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=20.91 E-value=8.9e+02 Score=24.63 Aligned_cols=85 Identities=13% Similarity=0.282 Sum_probs=51.1
Q ss_pred cEEEecccCCCHHHHHhcCC-C---CCHHHHH-----HHHHHHHHhCC----CCEEEEEE--E-------EcCC---CCC
Q 010162 193 SFLHVPVQSGSDAVLSAMNR-E---YTLSDFR-----TVVDTLIELVP----GMQIATDI--I-------CGFP---GET 247 (516)
Q Consensus 193 ~~i~iGlQSgsd~vLk~MnR-~---~t~e~~~-----~~I~~lr~~~p----Gi~i~td~--I-------vGfP---GET 247 (516)
+.+++|+++.++.-.+.+++ + ++.+++. +.++.+.+.+. .+.++.|+ + +|-| |=|
T Consensus 167 ~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPgv~tp~pgGl~ 246 (300)
T TIGR01229 167 NLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPATGTPVVGGLT 246 (300)
T ss_pred cEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCCCCCCCCCCCC
Confidence 68999999988766555543 2 2555543 22444444321 24444443 2 2333 467
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEEeeecCCC
Q 010162 248 DEDFNQTVNLIKEY-KFPQVHISQFYPRPGT 277 (516)
Q Consensus 248 eedf~etl~fi~el-~~d~v~if~~sp~pGT 277 (516)
..++...++.+.+. ++-.+.+.-|+|.-.+
T Consensus 247 ~~e~~~~l~~i~~~~~v~g~DivE~~P~~D~ 277 (300)
T TIGR01229 247 FREGLLIMEMLYETGLLTALDVVEVNPTLDI 277 (300)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEECccccc
Confidence 88888888887644 5666777788877654
No 325
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.81 E-value=1.6e+02 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHhcCC---CcEEEEccccC---cc----hhhhhCCcce-EEcCCChhHHHHHHH
Q 010162 2 DTLIAKCKSAK---KPLVVAGCVPQ---GS----RDLKELEGVS-IVGVQQIDRVVEVVE 50 (516)
Q Consensus 2 ~~iIr~~k~~~---~~VVV~GC~a~---~~----~~~~~~p~vD-vvG~~~~~~i~~ll~ 50 (516)
..+++.+++.+ .+|++||-.+- .. +.++++ ++| ++|++. .+.+++.
T Consensus 68 ~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~-Gv~~vf~pgt--~~~~i~~ 124 (128)
T cd02072 68 KGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEM-GFDRVFAPGT--PPEEAIA 124 (128)
T ss_pred HHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHc-CCCEEECcCC--CHHHHHH
Confidence 44555565543 35777775421 11 113343 666 777654 3444443
No 326
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.71 E-value=7.3e+02 Score=25.57 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE------eeecCCCccccCCCCCHH
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ------FYPRPGTPAARMKKVPSA 288 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~------~sp~pGTpa~~~~~v~~~ 288 (516)
|.+++...++.|.+. -++.+..|+=-|| |+ .....+|+..+.+.+..-+|+=- ...++|.++. +.+
T Consensus 62 t~~e~~~~vrrI~~a-~~lPv~vD~dtGf-G~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~-----~~~ 133 (289)
T COG2513 62 TLDEVLADARRITDA-VDLPVLVDIDTGF-GE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELV-----SID 133 (289)
T ss_pred cHHHHHHHHHHHHhh-cCCceEEeccCCC-Cc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcC-----CHH
Confidence 688999999988886 4678999999999 77 99999999999999988777643 2334666655 444
Q ss_pred HHHHHHHH
Q 010162 289 VVKKRSRE 296 (516)
Q Consensus 289 ~~~eR~~~ 296 (516)
+.-+|.+.
T Consensus 134 e~v~rIkA 141 (289)
T COG2513 134 EMVDRIKA 141 (289)
T ss_pred HHHHHHHH
Confidence 44444443
No 327
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=20.59 E-value=8.5e+02 Score=25.01 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeec
Q 010162 206 VLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPR 274 (516)
Q Consensus 206 vLk~MnR-~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~-~d~v~if~~sp~ 274 (516)
++.+|.- ....+.+.+.++.+++..++..+-..+ . |.+.+++.+..+.+++.+ .|.+.+....|.
T Consensus 65 ~~N~~Gl~n~g~~~~~~~i~~~~~~~~~~pvI~Si-~---G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn 131 (310)
T PRK02506 65 SINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSV-V---GLSPEETHTILKKIQASDFNGLVELNLSCPN 131 (310)
T ss_pred hhccCCCCCcCHHHHHHHHHHHHhhcCCCCEEEEE-E---eCcHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 4444433 346788888888777764444444443 3 568899999999998887 788888888774
No 328
>PRK04326 methionine synthase; Provisional
Probab=20.48 E-value=9.3e+02 Score=24.65 Aligned_cols=161 Identities=13% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCC
Q 010162 110 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 189 (516)
Q Consensus 110 ~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~ 189 (516)
.+.+.++++.+.+.|++.|.+-+..+. +.......+.+.++++.+.+. ....+++.+.+. .+.+. .+.+.+
T Consensus 160 ~~~~~~~i~~l~~~G~~~iqidEP~l~-~~~~~~~~~~~~l~~~~~~~~--~~v~lH~C~G~~---~~~~~---~l~~~~ 230 (330)
T PRK04326 160 AKVINEEIKNLVEAGAKYIQIDEPALA-THPEDVEIAVEALNRIVKGIN--AKLGLHVCYGDY---SRIAP---YILEFP 230 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCchhh-cCHHHHHHHHHHHHHHHhCCC--CEEEEEEeCCCc---HHHHH---HHHhCC
Confidence 356677778888889975544333222 211110112344444443332 112333332332 22222 223333
Q ss_pred CCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CCCCHHHHHHHHHHHHh-cCCCeE
Q 010162 190 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF--PGETDEDFNQTVNLIKE-YKFPQV 266 (516)
Q Consensus 190 ~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf--PGETeedf~etl~fi~e-l~~d~v 266 (516)
+..+++-.-+... +.++.+++..++-.+...+|=+- --||.|++.+.++-+.+ ++.+.+
T Consensus 231 --vd~i~~d~~~~~~----------------~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~ 292 (330)
T PRK04326 231 --VDQFDLEFANGNY----------------KLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKL 292 (330)
T ss_pred --CCEEEEEeCCCCc----------------hhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhE
Confidence 5666665532221 12333444423434555555432 23678888877777666 333322
Q ss_pred EEEEeeecCCCccccCCCCCHHHHHHHHHHHHHHHHHHh
Q 010162 267 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 305 (516)
Q Consensus 267 ~if~~sp~pGTpa~~~~~v~~~~~~eR~~~L~~l~~~~~ 305 (516)
..-|+.-+ ..+|.++..+-.+.+.+..+.++
T Consensus 293 -----~lsp~Cgl---~~~~~~~a~~kl~~l~~~a~~~~ 323 (330)
T PRK04326 293 -----YINPDCGL---KLLPREIAYQKLVNMVKATREVR 323 (330)
T ss_pred -----EECCCCCC---CcCCHHHHHHHHHHHHHHHHHHH
Confidence 22233333 34566666666776666665544
No 329
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.41 E-value=1.2e+03 Score=25.81 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCCce-EE----Eeec-CCcchHHHH
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGSTM-LR----IGMT-NPPFILEHL 179 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~--yg~d~~~~l~eLL~~I~~~i~~~~~~~-ir----i~~~-~P~~i~~~l 179 (516)
...++++.-+..+.+.|+..|-+.|+-++. |+. ....--+.|+.+.+.++...... +| ++|. +|+++.+.+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 467888888888888899888887764333 221 11223455666666555321111 11 1222 355555554
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE-EEcCCCCCHHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI-ICGFPGETDEDFNQTVNLI 258 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~-IvGfPGETeedf~etl~fi 258 (516)
.+ ...+++ +..+-+.- .+| ..+.....++.+++. |..+...+ ..+-|-.|.+-+.+.++.+
T Consensus 111 v~--~a~~~G--idi~Rifd---------~ln---d~~n~~~ai~~ak~~--G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 111 IS--LSAQNG--IDVFRIFD---------ALN---DPRNIQQALRAVKKT--GKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred HH--HHHHCC--CCEEEEcc---------cCC---CHHHHHHHHHHHHHc--CCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 22 223333 33333221 222 556777788888887 66533222 2235666777777777777
Q ss_pred HhcCCCeEEE
Q 010162 259 KEYKFPQVHI 268 (516)
Q Consensus 259 ~el~~d~v~i 268 (516)
.+.+.+.+.+
T Consensus 173 ~~~Gad~I~I 182 (468)
T PRK12581 173 VEMGADSICI 182 (468)
T ss_pred HHcCCCEEEE
Confidence 7777776544
No 330
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.09 E-value=5e+02 Score=25.85 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 108 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 108 r~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
.+++.+++-++.+.+.|+..|.|.|. ++ .-.+..+.++++.+.+.++
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT-~G---~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDS-AG---AMLPDDVRERVRALREALD 184 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCC-CC---CcCHHHHHHHHHHHHHhCC
Confidence 47899999999999999999988762 32 2223357788888876654
No 331
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.07 E-value=5.5e+02 Score=21.87 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc
Q 010162 216 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 216 ~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
.+.+..+.+.+++..| ..+.+.++=| .-++.+.++.+.+.+..++.+.||.-.+|.-+.+
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE~-----~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~ 74 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVEG-----YPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHN 74 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEcC-----CCCHHHHHHHHHHcCCCEEEEEehhheecccchh
Confidence 4667777777777633 4455555534 4457888888888899999999999999986654
No 332
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.03 E-value=3.4e+02 Score=28.31 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=39.2
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-------~~l~eLL~~I~~~i~ 158 (516)
++...|-+| .+++.++++++.+.+.|++.|.|.|. .......+ .-+.+.++.+.+.++
T Consensus 49 I~smPg~~r-~sid~l~~~~~~~~~~Gi~~v~lFgv--~~~Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 49 ISTLPGISR-LPESALADEIERLYALGIRYVMPFGI--SHHKDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred cCCCCCcce-ECHHHHHHHHHHHHHcCCCEEEEeCC--CCCCCCCcccccCCCChHHHHHHHHHHHCC
Confidence 344545444 58999999999999999999999885 22211111 125667777776665
Done!