Query 010162
Match_columns 516
No_of_seqs 431 out of 2551
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 2.2E-50 7.7E-55 410.8 32.5 284 78-369 3-296 (304)
2 1olt_A Oxygen-independent copr 99.9 6.6E-25 2.2E-29 235.1 20.0 194 77-281 51-252 (457)
3 3t7v_A Methylornithine synthas 99.9 1.2E-22 4.2E-27 209.8 21.8 196 79-289 61-257 (350)
4 3iix_A Biotin synthetase, puta 99.9 3E-22 1E-26 206.0 22.3 196 79-291 53-250 (348)
5 1r30_A Biotin synthase; SAM ra 99.9 9.9E-21 3.4E-25 197.0 22.7 196 79-292 65-268 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 3.9E-15 1.3E-19 152.7 25.1 194 79-290 14-216 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 1E-13 3.5E-18 134.0 20.0 176 83-278 23-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.6 1.2E-13 4.1E-18 141.9 19.1 179 82-278 71-281 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.3 5.8E-12 2E-16 127.3 12.5 175 80-279 52-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.2 4.3E-10 1.5E-14 118.8 20.4 181 78-281 114-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.1 1.4E-09 4.6E-14 114.2 18.6 185 78-278 114-318 (404)
12 4fhd_A Spore photoproduct lyas 97.6 0.00029 1E-08 72.7 10.9 164 82-260 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.2 0.004 1.4E-07 57.2 13.0 132 126-278 5-141 (182)
14 1ydn_A Hydroxymethylglutaryl-C 93.7 0.82 2.8E-05 45.2 13.6 147 106-269 21-175 (295)
15 2cw6_A Hydroxymethylglutaryl-C 93.3 4 0.00014 40.3 17.8 147 106-269 22-176 (298)
16 2ftp_A Hydroxymethylglutaryl-C 90.8 4.2 0.00014 40.2 14.6 147 106-269 25-179 (302)
17 1ydo_A HMG-COA lyase; TIM-barr 89.5 4.7 0.00016 40.2 13.7 147 106-269 23-177 (307)
18 3ewb_X 2-isopropylmalate synth 84.4 13 0.00044 36.7 13.4 146 106-269 22-170 (293)
19 1yez_A MM1357; MAR30, autostru 84.1 3.8 0.00013 31.2 7.4 55 311-369 13-67 (68)
20 1nvm_A HOA, 4-hydroxy-2-oxoval 83.4 12 0.00041 37.6 13.0 138 106-269 25-169 (345)
21 1yvc_A MRR5; structure, autost 83.0 5 0.00017 30.8 7.7 55 311-369 15-69 (70)
22 3ble_A Citramalate synthase fr 80.7 20 0.00068 36.0 13.4 144 106-269 36-189 (337)
23 1uwv_A 23S rRNA (uracil-5-)-me 76.7 13 0.00045 38.4 10.9 57 313-373 15-71 (433)
24 3eeg_A 2-isopropylmalate synth 75.9 22 0.00075 35.5 11.9 143 106-267 23-169 (325)
25 3ivs_A Homocitrate synthase, m 74.0 36 0.0012 35.4 13.2 142 106-269 56-200 (423)
26 3rmj_A 2-isopropylmalate synth 73.0 29 0.00098 35.4 12.1 146 106-269 29-177 (370)
27 1t2y_A Metallothionein, MT; pr 68.6 3 0.0001 25.9 2.0 14 403-417 2-15 (26)
28 2jjq_A Uncharacterized RNA met 67.8 7.6 0.00026 40.4 6.5 56 310-373 16-71 (425)
29 2nx9_A Oxaloacetate decarboxyl 62.7 1.3E+02 0.0043 31.6 14.7 137 107-269 26-178 (464)
30 3inp_A D-ribulose-phosphate 3- 62.3 1.1E+02 0.0037 29.2 13.1 134 106-281 35-173 (246)
31 2ztj_A Homocitrate synthase; ( 61.5 1.1E+02 0.0038 31.0 13.8 138 106-269 20-164 (382)
32 1rqb_A Transcarboxylase 5S sub 60.8 1.4E+02 0.0048 31.9 14.8 141 107-269 43-195 (539)
33 2yci_X 5-methyltetrahydrofolat 59.2 80 0.0028 30.6 11.7 141 106-262 29-193 (271)
34 3ovp_A Ribulose-phosphate 3-ep 52.6 71 0.0024 30.0 9.8 134 106-281 12-151 (228)
35 1aj0_A DHPS, dihydropteroate s 51.4 1.8E+02 0.0062 28.3 13.2 140 106-261 33-207 (282)
36 3noy_A 4-hydroxy-3-methylbut-2 50.8 86 0.0029 31.8 10.4 136 107-261 42-202 (366)
37 1x7f_A Outer surface protein; 43.8 88 0.003 32.0 9.4 40 192-239 55-94 (385)
38 1tx2_A DHPS, dihydropteroate s 42.8 1.6E+02 0.0055 28.9 10.9 138 107-261 59-226 (297)
39 3fst_A 5,10-methylenetetrahydr 41.4 2.7E+02 0.0091 27.3 15.3 126 106-254 92-223 (304)
40 2yxb_A Coenzyme B12-dependent 39.8 21 0.00072 31.8 3.6 51 1-52 86-142 (161)
41 2bdq_A Copper homeostasis prot 37.6 1.4E+02 0.005 28.1 9.2 145 109-282 74-220 (224)
42 1lgh_A LH II, B800/850, light 36.7 21 0.00073 26.4 2.5 30 480-509 7-36 (56)
43 3apt_A Methylenetetrahydrofola 35.7 2.2E+02 0.0075 27.9 10.7 108 106-233 81-200 (310)
44 1eye_A DHPS 1, dihydropteroate 30.4 3.8E+02 0.013 25.9 12.9 138 106-261 24-199 (280)
45 3lmz_A Putative sugar isomeras 30.2 3.2E+02 0.011 25.0 11.0 66 192-269 44-109 (257)
46 2f6u_A GGGPS, (S)-3-O-geranylg 27.3 45 0.0015 31.7 3.8 107 162-283 7-140 (234)
47 3qrx_B Melittin; calcium-bindi 27.2 23 0.00079 21.6 1.1 12 444-455 14-25 (26)
48 1vzw_A Phosphoribosyl isomeras 26.5 1E+02 0.0035 28.6 6.2 131 112-272 33-169 (244)
49 3ctl_A D-allulose-6-phosphate 26.2 4E+02 0.014 24.8 15.1 134 107-280 9-144 (231)
50 2dqw_A Dihydropteroate synthas 25.4 3.4E+02 0.011 26.5 9.9 143 106-262 47-220 (294)
51 1h7n_A 5-aminolaevulinic acid 23.8 1.1E+02 0.0039 30.6 6.0 60 98-158 57-124 (342)
52 2vp8_A Dihydropteroate synthas 23.7 2.7E+02 0.0091 27.6 8.8 143 107-261 61-239 (318)
53 3lpe_B DNA-directed RNA polyme 23.1 17 0.00057 27.2 -0.1 28 82-110 9-36 (59)
54 1f6y_A 5-methyltetrahydrofolat 23.0 4.8E+02 0.016 24.7 10.4 27 106-132 20-46 (262)
55 2ze3_A DFA0005; organic waste 22.1 3.6E+02 0.012 25.9 9.3 82 213-301 58-139 (275)
56 2xvy_A Chelatase, putative; me 22.1 1.6E+02 0.0054 27.8 6.7 58 215-277 24-93 (269)
57 1zlp_A PSR132, petal death pro 21.9 1.6E+02 0.0054 29.3 6.7 56 213-270 82-137 (318)
58 2vef_A Dihydropteroate synthas 21.4 5.8E+02 0.02 25.0 11.0 63 106-173 28-96 (314)
59 1w5q_A Delta-aminolevulinic ac 21.0 1.3E+02 0.0045 30.0 5.8 59 98-158 54-120 (337)
60 2y5s_A DHPS, dihydropteroate s 20.9 4.3E+02 0.015 25.7 9.6 143 106-262 41-217 (294)
61 1ydn_A Hydroxymethylglutaryl-C 20.9 5.5E+02 0.019 24.4 11.3 63 79-158 136-198 (295)
62 3tva_A Xylose isomerase domain 20.0 5.2E+02 0.018 23.8 10.3 67 192-269 35-122 (290)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.2e-50 Score=410.82 Aligned_cols=284 Identities=29% Similarity=0.485 Sum_probs=234.7
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~--~~~l~eLL~~I~~ 155 (516)
+..+||++++||+++|+||.+|..+|+.|++++++|++|++.+.+.|+++|.|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999998643 3569999999864
Q ss_pred hCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 156 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 156 ~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
.+ +..|+++.+++|..+++++ +..+.+.+++++++++|+||+|+++|++|+|+++.+++.++++.+++++||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 32 3468999889999998887 445566777789999999999999999999999999999999999998889999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHHHHHHHHHHHHHHHH--hhhhcCCC
Q 010162 236 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAF--TPYLGMEG 312 (516)
Q Consensus 236 ~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~~eR~~~L~~l~~~~--~~~~~~vG 312 (516)
.+|||+||||||+++|.+|++++++++++.+++|+|+|+||||+++++ ++|++++++|.++|+++++++ .++++++|
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 237 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG 237 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 899999999999999999986 47899999
Q ss_pred cEEEEEEEEEecCCceEEEeccCcEEE-----EECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 313 RVERIWITEIAADGIHLVGHTKGYVQV-----LVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 313 ~~~~vlve~~~~~~~~~~gr~~~~~~v-----~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
++++||||+. .++ .+.||+.+|.++ ++.++. .+|++++|+|+++..++|.|+++
T Consensus 238 ~~~~vl~e~~-~~~-~~~g~~~~~~~~~dg~~~~~~~~-~~g~~~~v~i~~~~~~~l~g~~~ 296 (304)
T 2qgq_A 238 KKLKFLVEGK-EGK-FLVGRTWTEAPEVDGVVFVRGKG-KIGDFLEVVIKEHDEYDMWGSVI 296 (304)
T ss_dssp CEEEEEEEEE-ETT-EEEEEETTCCTTTSCCEEEESCC-CTTCEEEEEEEEEETTEEEEEEC
T ss_pred CEEEEEEEec-CCC-EEEEECCCCcEeccceEEEcCCC-CCCCEEEEEEEEeeCCeEEEEEE
Confidence 9999999986 233 589999999987 776544 68999999999999999999975
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.93 E-value=6.6e-25 Score=235.07 Aligned_cols=194 Identities=16% Similarity=0.235 Sum_probs=157.6
Q ss_pred CceEEEEEeCCCCCCCCcCcccCccCC---CcCCCCHHHHHHHHHHHHhC----CCcEEEEeecCCCCCCCCcCCCHHHH
Q 010162 77 NKFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPIL 149 (516)
Q Consensus 77 ~~~~a~V~isrGC~~~CsFC~ip~~rG---~~rsr~~e~Iv~EI~~L~~~----GvkeI~l~g~n~~~yg~d~~~~l~eL 149 (516)
.....||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|+|.|++.+.... ..+.++
T Consensus 51 ~~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~l 126 (457)
T 1olt_A 51 RPLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRL 126 (457)
T ss_dssp SCEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHH
T ss_pred CceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHH
Confidence 3567899996 6999999999886532 22456789999999987764 46778887754332222 237888
Q ss_pred HHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 010162 150 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 229 (516)
Q Consensus 150 L~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 229 (516)
++.+.+.++......+++ .++|+.++++. +..+.+.+ +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 127 l~~i~~~~~~~~~~eiti-e~~p~~l~~e~--l~~L~~~G--~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~ 201 (457)
T 1olt_A 127 MKLLRENFQFNADAEISI-EVDPREIELDV--LDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI 201 (457)
T ss_dssp HHHHHHHSCEEEEEEEEE-EECSSSCCTHH--HHHHHHTT--CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcEEEE-EEccCcCCHHH--HHHHHHcC--CCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 888876543222345666 47999887766 34445555 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc
Q 010162 230 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 230 ~pGi~-i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
|+. +++|+|+|+||||.+++.+|++++.+++++++++|.|+|.|||++++
T Consensus 202 --G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~ 252 (457)
T 1olt_A 202 --GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQ 252 (457)
T ss_dssp --TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGG
T ss_pred --CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHh
Confidence 997 99999999999999999999999999999999999999999999875
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.90 E-value=1.2e-22 Score=209.80 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=157.8
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcC-CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~r-sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
+.+.|.+|+||+++|.||.++...+..+ .+++++|+++++.+.+.|+++|.|+|++.+.|..+ ...+.++++.+.+..
T Consensus 61 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~ 139 (350)
T 3t7v_A 61 LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEEL 139 (350)
T ss_dssp EEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhc
Confidence 3567899999999999999876553222 36999999999999999999999998764443211 123678888886543
Q ss_pred CCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 010162 158 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 237 (516)
Q Consensus 158 ~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~t 237 (516)
+ ..+.+ ++..++++. +..+.+++ +.++.+|+||+++++++.|+++++.+++.++++.++++ |+.+.+
T Consensus 140 ~----i~i~~---s~g~~~~e~--l~~L~~aG--~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 206 (350)
T 3t7v_A 140 G----LPIMI---SPGLMDNAT--LLKAREKG--ANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVED 206 (350)
T ss_dssp C----SCEEE---ECSSCCHHH--HHHHHHTT--EEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEE
T ss_pred C----ceEEE---eCCCCCHHH--HHHHHHcC--CCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEcc
Confidence 2 12332 344455544 33444554 78999999999999999999999999999999999999 999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHH
Q 010162 238 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 289 (516)
Q Consensus 238 d~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~ 289 (516)
++|+|+ |||.+++.++++++.+++++.+.+++|.|.||||+++.+..+.+.
T Consensus 207 ~~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e 257 (350)
T 3t7v_A 207 GILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLS 257 (350)
T ss_dssp EEEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCC
T ss_pred ceEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHH
Confidence 999999 999999999999999999999999999999999999887554433
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.89 E-value=3e-22 Score=206.01 Aligned_cols=196 Identities=20% Similarity=0.281 Sum_probs=157.6
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCc-C-CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHL-G-SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 156 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~-r-sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~ 156 (516)
+.+.|.+++||+++|.||..+...+.. + ..++++|+++++.+.+.|+++|.|+|++.+.+..+ .+.++++.+.+.
T Consensus 53 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~---~~~~li~~i~~~ 129 (348)
T 3iix_A 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPD---VISDIVKEIKKM 129 (348)
T ss_dssp EEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTH---HHHHHHHHHHTT
T ss_pred EEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHH---HHHHHHHHHHhc
Confidence 346789999999999999987765532 2 36899999999999999999999998763433322 367788777542
Q ss_pred CCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 010162 157 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 236 (516)
Q Consensus 157 i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~ 236 (516)
. ..+.+ ++..++++. +..+.+++ +.++.+++||.++++++.++++.+.+++.+.++.++++ |+.+.
T Consensus 130 -~----~~i~~---s~g~l~~e~--l~~L~~ag--~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 195 (348)
T 3iix_A 130 -G----VAVTL---SLGEWPREY--YEKWKEAG--ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETG 195 (348)
T ss_dssp -S----CEEEE---ECCCCCHHH--HHHHHHHT--CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEE
T ss_pred -C----ceEEE---ecCCCCHHH--HHHHHHhC--CCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeec
Confidence 1 23332 233344444 23333334 77899999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHH
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 291 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~ 291 (516)
+++|+|+||||.+++.++++++.+++++.+.+++|.|.||||+++.+..+.++..
T Consensus 196 ~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~ 250 (348)
T 3iix_A 196 AGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTL 250 (348)
T ss_dssp ECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHH
T ss_pred cceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999988777655433
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.87 E-value=9.9e-21 Score=197.04 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=153.0
Q ss_pred eEEEEEe-CCCCCCCCcCcccCccC--C--CcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 010162 79 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 152 (516)
Q Consensus 79 ~~a~V~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~-~~~l~eLL~~ 152 (516)
....|.+ ++||+++|.||..+... + +.+.+++++|+++++.+.+.|+++|.|+|... ++... ...+.++++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~ 142 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQG 142 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHH
Confidence 3456776 99999999999988643 2 24567999999999999999999999987421 11111 1236777777
Q ss_pred HHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 010162 153 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 232 (516)
Q Consensus 153 I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pG 232 (516)
+.+ .. ..+. +++..++++. +..+.+.+ ++++++++|| ++++++.|+|+++.+++++.++.++++ |
T Consensus 143 ik~-~g----~~i~---~t~G~l~~e~--l~~L~~aG--vd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--G 207 (369)
T 1r30_A 143 VKA-MG----LEAC---MTLGTLSESQ--AQRLANAG--LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--G 207 (369)
T ss_dssp HHH-TT----SEEE---EECSSCCHHH--HHHHHHHC--CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--H
T ss_pred HHH-cC----CeEE---EecCCCCHHH--HHHHHHCC--CCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 754 22 1222 2344444443 33333444 8899999999 999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEEeeecCCCccccCCCCCHHHHHH
Q 010162 233 MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARMKKVPSAVVKK 292 (516)
Q Consensus 233 i~i~td~IvGfPGETeedf~etl~fi~el~--~d~v~if~~sp~pGTpa~~~~~v~~~~~~e 292 (516)
+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+.++.++..+
T Consensus 208 i~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~ 268 (369)
T 1r30_A 208 IKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIR 268 (369)
T ss_dssp CEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHH
T ss_pred CeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHH
Confidence 99999999999 999999999999999997 889999999999999999887777655433
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.69 E-value=3.9e-15 Score=152.75 Aligned_cols=194 Identities=13% Similarity=0.234 Sum_probs=151.3
Q ss_pred eEEEEEeCCCCCCCCcCcccCcc-------CCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 010162 79 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 151 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~-------rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~ 151 (516)
.+..|.++++||.+|.||..+.. .+.....+.+++.+.++.+.+.|++.|.|+|++...+ ..+.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 35678999999999999987652 1233567899999999999989999999998655433 23778888
Q ss_pred HHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCC-CHHHHHHHHHHHHHhC
Q 010162 152 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 230 (516)
Q Consensus 152 ~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~-t~e~~~~~I~~lr~~~ 230 (516)
.+.+ .. ....+.+. ++...+++.+..| .+.+ +.+|.++++|.++++++.++++. +.+++.+.++.++++
T Consensus 89 ~~~~-~~--~~~~i~i~-TNG~ll~~~~~~L---~~~g--~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQ-ID--GIEDIGLT-TNGLLLKKHGQKL---YDAG--LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTT-CT--TCCEEEEE-ECSTTHHHHHHHH---HHHT--CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHh-CC--CCCeEEEE-eCccchHHHHHHH---HHCC--CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 7753 22 12255553 5666665543333 3333 67999999999999999998887 999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCC-CCCHHHH
Q 010162 231 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 290 (516)
Q Consensus 231 pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~-~v~~~~~ 290 (516)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|.|.++|+.+... .++.++.
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~~~~~~~~~e~ 216 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEM 216 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHH
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccchhhcCCCHHHH
Confidence 8888888877 7999999999999999999987 788889999999876654 5776543
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.58 E-value=1e-13 Score=133.95 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=127.7
Q ss_pred EEeCCCCCCCCcCcccCccC--CCcCCCCHHHHHHHHHHHHhC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 010162 83 LPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 157 (516)
Q Consensus 83 V~isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~EI~~L~~~---GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i 157 (516)
+.++.||+.+|.||..+... +..+.+++++++++++.+.+. ++..|.|+|++...+ .+ .+.++++.+.+ .
T Consensus 23 ~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~-~~---~l~~l~~~~~~-~ 97 (245)
T 3c8f_A 23 ITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-AE---FVRDWFRACKK-E 97 (245)
T ss_dssp EEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-HH---HHHHHHHHHHT-T
T ss_pred EEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC-HH---HHHHHHHHHHH-c
Confidence 34567999999999987543 234567899999999987764 478999999654432 11 14677776653 2
Q ss_pred CCCCCceEEEeecCCcc--hHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Q 010162 158 PPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 235 (516)
Q Consensus 158 ~~~~~~~iri~~~~P~~--i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i 235 (516)
+ ..+.+.+ +... ..+.+.++. +. +..+.++++|+++++++++++. +.+++.+.++.++++ |+.+
T Consensus 98 ~----~~i~i~T-ng~~~~~~~~~~~l~---~~---~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~--g~~v 163 (245)
T 3c8f_A 98 G----IHTCLDT-NGFVRRYDPVIDELL---EV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANK--NVKV 163 (245)
T ss_dssp T----CCEEEEE-CCCCCCCCHHHHHHH---HT---CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHH--TCCE
T ss_pred C----CcEEEEe-CCCcCcCHHHHHHHH---Hh---CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhc--CCEE
Confidence 1 2344442 3322 234443333 22 4689999999999999999654 459999999999999 8777
Q ss_pred EEEEEEcCCC--CCHHHHHHHHHHHHhcCC-CeEEEEEeeecCCCc
Q 010162 236 ATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGTP 278 (516)
Q Consensus 236 ~td~IvGfPG--ETeedf~etl~fi~el~~-d~v~if~~sp~pGTp 278 (516)
...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.++++
T Consensus 164 ~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 164 WIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 666655 565 678999999999999996 889999999987763
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.55 E-value=1.2e-13 Score=141.93 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=128.7
Q ss_pred EEEeC---CCCCCCCcCcccCccC-----CCcCCCCHHHHHHHHHHHHhC------C--------------CcEEEEe-e
Q 010162 82 ILPIN---VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-S 132 (516)
Q Consensus 82 ~V~is---rGC~~~CsFC~ip~~r-----G~~rsr~~e~Iv~EI~~L~~~------G--------------vkeI~l~-g 132 (516)
+|.++ +||+.+|.||..+... +..+..++++|++++..+.+. | ++.|.|+ |
T Consensus 71 ~l~i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sgg 150 (342)
T 2yx0_A 71 CLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS 150 (342)
T ss_dssp EEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSS
T ss_pred eEEEEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCC
Confidence 35555 8999999999987542 134667899999998776431 2 4678886 5
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCC
Q 010162 133 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 212 (516)
Q Consensus 133 ~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR 212 (516)
++...+. .+.++++.+.+ .+ ..+.+. ++... .+.+. .+.+.+.....+.+++++.++++++.+++
T Consensus 151 GEPll~~-----~l~~ll~~~~~-~g----~~i~l~-TNG~~-~e~l~---~L~~~g~~~~~l~isld~~~~e~~~~i~~ 215 (342)
T 2yx0_A 151 GEPMLYP-----YMGDLVEEFHK-RG----FTTFIV-TNGTI-PERLE---EMIKEDKLPTQLYVSITAPDIETYNSVNI 215 (342)
T ss_dssp SCGGGST-----THHHHHHHHHH-TT----CEEEEE-ECSCC-HHHHH---HHHHTTCCCSEEEEEECCSSHHHHHHHHC
T ss_pred Ccccchh-----hHHHHHHHHHH-CC----CcEEEE-cCCCc-HHHHH---HHHhcCCCCCEEEEEccCCCHHHHHHHhC
Confidence 5444331 47888888764 22 244554 34433 33333 33333323679999999999999999987
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 213 ---EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 213 ---~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
+++.+++.+.++.+++. |+.+...+++ +||++.+++.++++++++++++++++.+|.|.|+++
T Consensus 216 ~~~~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~ 281 (342)
T 2yx0_A 216 PMIPDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR 281 (342)
T ss_dssp BSSSCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC------
T ss_pred CCcccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc
Confidence 56899999999999998 8888888888 799999899999999999999999999999877654
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=5.8e-12 Score=127.34 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=108.2
Q ss_pred EEEEEeC-CCCCCCCcCcccCccC--C-------CcCCCCHHHHHHHHHHHHh------CC---------------CcEE
Q 010162 80 VEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKEV 128 (516)
Q Consensus 80 ~a~V~is-rGC~~~CsFC~ip~~r--G-------~~rsr~~e~Iv~EI~~L~~------~G---------------vkeI 128 (516)
...+.++ .||+.+|.||..+... | ..+..++++|++++..+.+ .| .+.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 3467788 7999999999976422 1 2366789999988866532 12 4568
Q ss_pred EEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHH
Q 010162 129 WLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 207 (516)
Q Consensus 129 ~l~-g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vL 207 (516)
.|+ |++...+ ..+.++++.+.+. + ..+.+. ++... .+. +..+ + ...+.+++++.+++++
T Consensus 132 ~~s~gGEPll~-----~~l~~li~~~~~~-g----~~~~l~-TNG~~-~~~---l~~L---~--~~~v~isld~~~~~~~ 191 (311)
T 2z2u_A 132 AISLSGEPTLY-----PYLDELIKIFHKN-G----FTTFVV-SNGIL-TDV---IEKI---E--PTQLYISLDAYDLDSY 191 (311)
T ss_dssp EECSSSCGGGS-----TTHHHHHHHHHHT-T----CEEEEE-ECSCC-HHH---HHHC---C--CSEEEEECCCSSTTTC
T ss_pred EEeCCcCccch-----hhHHHHHHHHHHC-C----CcEEEE-CCCCC-HHH---HHhC---C--CCEEEEEeecCCHHHH
Confidence 887 4443332 2478888887642 2 244443 33322 222 2222 2 4689999999999999
Q ss_pred HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcc
Q 010162 208 SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 279 (516)
Q Consensus 208 k~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa 279 (516)
++++++ ++.+++.+.++.+++. | .+...++ ..||.+. ++.++++++.+++++.+++++|.|.++++.
T Consensus 192 ~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 192 RRICGGKKEYWESILNTLDILKEK--K-RTCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 999887 6789999999999987 6 4544443 3577777 899999999999999999999999998873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.22 E-value=4.3e-10 Score=118.85 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=129.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCC-cCCCCHHHHHHHHHHHHh-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 155 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~EI~~L~~-~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~ 155 (516)
..+..+.++.||+.+|.||......+. .+..+.+++.+.++.+.+ .|+++|.|+|++...+..+ .+.++++.+.+
T Consensus 114 p~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d~---~L~~il~~l~~ 190 (416)
T 2a5h_A 114 PDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDE---TLEYIIAKLRE 190 (416)
T ss_dssp SSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHH---HHHHHHHHHHT
T ss_pred CCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCHH---HHHHHHHHHHh
Confidence 346788899999999999987654442 356789999999998888 6999999999766544221 26778887753
Q ss_pred hCCCCCCceEEEee----cCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 010162 156 ELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 231 (516)
Q Consensus 156 ~i~~~~~~~iri~~----~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 231 (516)
++ +...+++++ ..|..+++++.+ .+.+. ..+.+++++.+++ .+ + +++.++++.++++
T Consensus 191 -~~--~v~~i~i~Tng~~~~p~~it~e~l~--~L~~~----~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~~a-- 251 (416)
T 2a5h_A 191 -IP--HVEIVRIGSRTPVVLPQRITPELVN--MLKKY----HPVWLNTHFNHPN---EI----T-EESTRACQLLADA-- 251 (416)
T ss_dssp -ST--TCCEEEEECSHHHHCGGGCCHHHHH--HHGGG----CSEEEEECCCSGG---GC----C-HHHHHHHHHHHHT--
T ss_pred -cC--CccEEEEEecccccccccCCHHHHH--HHHhc----CcEEEEEecCCHH---HH----h-HHHHHHHHHHHHc--
Confidence 33 234677763 244455565533 22222 4688999987773 22 3 8999999999999
Q ss_pred CCEEEEEEEE--cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCcccc
Q 010162 232 GMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 232 Gi~i~td~Iv--GfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~ 281 (516)
|+.+....++ |+ +++.+++.+.++++.+++++...++.+.+.+||+.+.
T Consensus 252 Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 252 GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 8866555444 66 4888999999999999998776666666678987654
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.13 E-value=1.4e-09 Score=114.22 Aligned_cols=185 Identities=16% Similarity=0.313 Sum_probs=124.6
Q ss_pred ceEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHh----------CCCcEEEEeecCCCCCCCCcC--CC
Q 010162 78 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIG--VN 145 (516)
Q Consensus 78 ~~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~----------~GvkeI~l~g~n~~~yg~d~~--~~ 145 (516)
+.+..|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|+|+|. |.... ..
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~Gg-----GEPLln~d~ 187 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM-----GEPLLNLNN 187 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSS-----SCGGGCHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCC-----CCcccCHHH
Confidence 456677788999999999998643 44578899999999987654 24788999952 22211 12
Q ss_pred HHHHHHHHHHhCCC-CCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhc---CCCCCHHHHHH
Q 010162 146 LPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRT 221 (516)
Q Consensus 146 l~eLL~~I~~~i~~-~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~M---nR~~t~e~~~~ 221 (516)
+.++++.+.+..+. -....+.+++. - . .+.+.++.+. . -..+.+.+.+.+++..+.+ +++++.+++++
T Consensus 188 v~~~i~~lk~~~Gl~~s~r~itlsTn-G-~-~p~i~~L~~~---~--d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ 259 (404)
T 3rfa_A 188 VVPAMEIMLDDFGFGLSKRRVTLSTS-G-V-VPALDKLGDM---I--DVALAISLHAPNDEIRDEIVPINKKYNIETFLA 259 (404)
T ss_dssp HHHHHHHHHSTTTTCCCGGGEEEEES-C-C-HHHHHHHHHH---C--CCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHH
T ss_pred HHHHHHHHHhhcCcCcCCCceEEECC-C-c-HHHHHHHHHh---h--cceEEecccCCCHHHHHHhcCCccCCCHHHHHH
Confidence 56666666432110 00125666532 1 1 2444444432 1 3468899999999988765 47899999999
Q ss_pred HHHHH-HHhCC---CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCc
Q 010162 222 VVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 278 (516)
Q Consensus 222 ~I~~l-r~~~p---Gi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTp 278 (516)
+++.+ .+... .+.+.+-+|=|+ +++++++.+.++|++.++ ..+++.+|.|.++++
T Consensus 260 ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~-~~VnLIpynP~~~~~ 318 (404)
T 3rfa_A 260 AVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTP-CKINLIPWNPFPGAP 318 (404)
T ss_dssp HHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSC-EEEEEEECCCCTTCC
T ss_pred HHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCC-CcEEEEeccCCCCCC
Confidence 99554 45411 234445444454 789999999999999986 478999999988764
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.57 E-value=0.00029 Score=72.74 Aligned_cols=164 Identities=13% Similarity=0.203 Sum_probs=103.5
Q ss_pred EEEeCCCCCCCCcCcccCccCCCc----CCCCHHHHHHHHHHHHh-CCCc-EEEEeecCCCCCCCCcCCC-HHHHHHHHH
Q 010162 82 ILPINVGCLGACTYCKTKHARGHL----GSYTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVN-LPILLNAIV 154 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~----rsr~~e~Iv~EI~~L~~-~Gvk-eI~l~g~n~~~yg~d~~~~-l~eLL~~I~ 154 (516)
++...+||+++|.||......|.. .....++++++++...+ .+.+ ..+-+|.++..|..+.... ..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 467789999999999887655431 24579999999876443 3433 4555676666663322222 335555554
Q ss_pred HhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCC
Q 010162 155 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 155 ~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pGi 233 (516)
+ .+ ...+.+.+=.+ .++ . |..+...+ -..+.+.+- ++++.+.+-.+ -+.++-+++++.++++ |+
T Consensus 190 ~-~~---~~~v~i~TKs~-lid-~---L~~l~~~~--~v~V~~Sit--t~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 A-TD---YGRLRFVTKYE-HVD-H---LLDARHNG--KTRFRFSIN--SRYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp H-CS---SEEEEEEESCC-CCG-G---GTTCCCTT--CEEEEEEEC--CHHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred h-CC---CceEEEEeCCc-CHH-H---HHhcCcCC--ceEEEEEEc--CHHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 3 22 12455553222 222 1 22222223 234555553 37777777654 4889999999999999 99
Q ss_pred EEEEEEEEcCCCCCH-HHHHHHHHHHHh
Q 010162 234 QIATDIICGFPGETD-EDFNQTVNLIKE 260 (516)
Q Consensus 234 ~i~td~IvGfPGETe-edf~etl~fi~e 260 (516)
.+...+.==+|+++. +++.+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 988888777898775 688888887655
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.21 E-value=0.004 Score=57.15 Aligned_cols=132 Identities=9% Similarity=0.065 Sum_probs=84.3
Q ss_pred cEEEEeecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCCccEEEecccCCCH
Q 010162 126 KEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 204 (516)
Q Consensus 126 keI~l~g~n~~~yg~d~~~~l-~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd 204 (516)
..|.|+|++.+.+. ++ .++++.+.+ .+ ..+.+. ++-....+.+.++ ... ...+.+.+.+.++
T Consensus 5 ~~v~~tGGEPll~~-----~~~~~l~~~~~~-~g----~~~~l~-TNG~l~~~~~~~l---~~~---~d~v~isld~~~~ 67 (182)
T 3can_A 5 GGVTFCGGEPLLHP-----EFLIDILKRCGQ-QG----IHRAVD-TTLLARKETVDEV---MRN---CELLLIDLKSMDS 67 (182)
T ss_dssp CCEEECSSTGGGSH-----HHHHHHHHHHHH-TT----CCEEEE-CTTCCCHHHHHHH---HHT---CSEEEEECCCSCH
T ss_pred CEEEEEcccccCCH-----HHHHHHHHHHHH-CC----CcEEEE-CCCCCCHHHHHHH---Hhh---CCEEEEECCCCCH
Confidence 34677775444321 24 477776654 22 234443 3332222333333 322 4679999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHHhc-CC-CeEEEEEeeecCCCc
Q 010162 205 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGTP 278 (516)
Q Consensus 205 ~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG--ETeedf~etl~fi~el-~~-d~v~if~~sp~pGTp 278 (516)
+..+.++. .+.+.+.+.++.+++. |+.+...+.+ .|| ++.+++.+.++++.++ ++ ..+++.+|.|....+
T Consensus 68 ~~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 68 TVHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 98877643 3458999999999998 6655444433 244 7899999999999999 88 899999999987654
No 14
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=93.73 E-value=0.82 Score=45.22 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|.+.+.....|-... ....++++.+.+ .+ .+++...-+. .+. +...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~-~~-----~~~v~~l~~n--~~~---i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRR-AD-----GVRYSVLVPN--MKG---YEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCC-CS-----SSEEEEECSS--HHH---HHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHh-CC-----CCEEEEEeCC--HHH---HHHH
Confidence 3578999999999999999999998764322221100 124556555532 11 2233222232 122 3333
Q ss_pred HcCCCCccEEEecccCCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLSA-MNREY--TLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk~-MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~I--vGfPGE---Teedf~etl~f 257 (516)
.+.+ ++.+++-+ ++|+...+. ++++. ..+.+.++++.+++. |+.+...+. +|.|.+ +++.+.+.++.
T Consensus 89 ~~~G--~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AAAH--ADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 4444 67788755 567766553 45543 456667778999999 999987777 454543 56777777777
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+.+.+.+.+.
T Consensus 164 ~~~~G~d~i~l~ 175 (295)
T 1ydn_A 164 LFSLGCHEVSLG 175 (295)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHhcCCCEEEec
Confidence 779999988877
No 15
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=93.26 E-value=4 Score=40.32 Aligned_cols=147 Identities=10% Similarity=0.127 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-+.+.....+ ........++++.+. ..+. . ++..+-+. .+. +...
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~-~p~~~d~~~~~~~~~-~~~~---~--~~~~l~~~--~~~---i~~a 89 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKW-VPQMGDHTEVLKGIQ-KFPG---I--NYPVLTPN--LKG---FEAA 89 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEECCCTTT-CGGGTTHHHHHHHSC-CCTT---C--BCCEECCS--HHH---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcCccc-ccccCCHHHHHHHHh-hCCC---C--EEEEEcCC--HHh---HHHH
Confidence 457899999999999999999998765221110 011122344444432 1211 1 12112231 122 3333
Q ss_pred HcCCCCccEEEecccCCCHHH-HHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~v-Lk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~Iv--GfPGE---Teedf~etl~f 257 (516)
.+.+ ++.+++.+ +.|+.- .+.+++.. ..+.+.+.++.+++. |+.+..+++. |.|.+ +.+.+.+.++.
T Consensus 90 ~~ag--~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (298)
T 2cw6_A 90 VAAG--AKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVTKK 164 (298)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHH
Confidence 4444 77888865 666654 45677654 567888889999999 9999999884 44533 57888888999
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+++.+.+.+.
T Consensus 165 ~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 165 FYSMGCYEISLG 176 (298)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHcCCCEEEec
Confidence 999999988776
No 16
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=90.82 E-value=4.2 Score=40.24 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|.......... ........++++.+.+ .....+... + + . .+. +...
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~-~~~~~d~~~~~~~~~~----~~~~~~~~l-~-~-~-~~~---i~~a 92 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKW-VPQMAGSAEVFAGIRQ----RPGVTYAAL-A-P-N-LKG---FEAA 92 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTT-CGGGTTHHHHHHHSCC----CTTSEEEEE-C-C-S-HHH---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcCccc-cccccCHHHHHHHhhh----cCCCEEEEE-e-C-C-HHH---HHHH
Confidence 457899999999999999999998765211100 0011123444444421 111233222 2 3 1 122 3333
Q ss_pred HcCCCCccEEEecccCCCHH-HHHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CCC---CHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PGE---TDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~-vLk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGf--PGE---Teedf~etl~f 257 (516)
.+.+ ++.+++-. +.|+. ..+.+|+.. ..+.+.+.++.+++. |+.+..++..-| |.+ +++.+.+.++.
T Consensus 93 ~~aG--~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 167 (302)
T 2ftp_A 93 LESG--VKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVARE 167 (302)
T ss_dssp HHTT--CCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHHHH
T ss_pred HhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHH
Confidence 4444 77888765 44554 445677654 567788888999999 999888886543 432 45667777777
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+.+.+.+.+.
T Consensus 168 ~~~~G~d~i~l~ 179 (302)
T 2ftp_A 168 LQQMGCYEVSLG 179 (302)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHcCCCEEEEe
Confidence 779999987766
No 17
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=89.54 E-value=4.7 Score=40.18 Aligned_cols=147 Identities=11% Similarity=0.062 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-+........ .....+..++++.+. .. ...++..+-|. .+. +...
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~-~p~~~d~~~~~~~~~----~~--~~~~~~~l~~~--~~~---i~~a 90 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSFVHPKW-IPALRDAIDVAKGID----RE--KGVTYAALVPN--QRG---LENA 90 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTT-CGGGTTHHHHHHHSC----CC--TTCEEEEECCS--HHH---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCccc-ccccCCHHHHHHHhh----hc--CCCeEEEEeCC--HHh---HHHH
Confidence 457899999999999999999998875211100 000012344444332 11 12233323342 122 2222
Q ss_pred HcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CC---CCHHHHHHHHHH
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQTVNL 257 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGf--PG---ETeedf~etl~f 257 (516)
.+.+ .+.+++.+ |.|+.-. +.+++.. ..+.+.+.++.+++. |..+..+++.-| |. -+.+.+.+.++.
T Consensus 91 ~~~g--~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (307)
T 1ydo_A 91 LEGG--INEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRLSEA 165 (307)
T ss_dssp HHHT--CSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHHHH
T ss_pred HhCC--cCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 3333 67788776 6676543 4566543 346678889999999 999988887755 43 256788888888
Q ss_pred HHhcCCCeEEEE
Q 010162 258 IKEYKFPQVHIS 269 (516)
Q Consensus 258 i~el~~d~v~if 269 (516)
+.+.+.+.+.+-
T Consensus 166 ~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 166 LFEFGISELSLG 177 (307)
T ss_dssp HHHHTCSCEEEE
T ss_pred HHhcCCCEEEEc
Confidence 899999877665
No 18
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=84.38 E-value=13 Score=36.68 Aligned_cols=146 Identities=9% Similarity=-0.000 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
...+.++.++-++.|.+.|++.|-.... ....+ -.+.++.+.+..+. . ++..+-+.. .+.+....+.
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~~----d~e~v~~i~~~~~~---~--~i~~l~~~~-~~di~~a~~~ 88 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSPG----DFECVKAIAKAIKH---C--SVTGLARCV-EGDIDRAEEA 88 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCHH----HHHHHHHHHHHCCS---S--EEEEEEESS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCcc----HHHHHHHHHHhcCC---C--EEEEEecCC-HHHHHHHHHH
Confidence 4678999999999999999999987642 22111 23446666655432 2 222111111 1222222221
Q ss_pred HcCCCCccEEEecccCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
.. +...+.+++-+ |.||--. +.+|+.. ..+.+.+.++.+++. |..+..+...+. --+++.+.+.++.+.+.+
T Consensus 89 ~~-~ag~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~G 163 (293)
T 3ewb_X 89 LK-DAVSPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDAG 163 (293)
T ss_dssp HT-TCSSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT
T ss_pred Hh-hcCCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHcC
Confidence 11 23367888766 6666543 3455432 345567777778887 777765554332 245677788889999999
Q ss_pred CCeEEEE
Q 010162 263 FPQVHIS 269 (516)
Q Consensus 263 ~d~v~if 269 (516)
.+.+.+-
T Consensus 164 ~~~i~l~ 170 (293)
T 3ewb_X 164 ATVINIP 170 (293)
T ss_dssp CCEEEEE
T ss_pred CCEEEec
Confidence 8876543
No 19
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=84.07 E-value=3.8 Score=31.24 Aligned_cols=55 Identities=29% Similarity=0.517 Sum_probs=40.6
Q ss_pred CCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 311 vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
.|..+++.|+....+| .-+|+..++ .++++ ...+|+.|.++|+........|+++
T Consensus 13 ~~~~~~~~I~~l~~~G-~Gva~~~g~-~vfV~--~alPGE~V~v~i~k~kk~~~~a~~~ 67 (68)
T 1yez_A 13 EGEVYDVTIQDIARQG-DGIARIEGF-VIFVP--GTKVGDEVRIKVERVLPKFAFASVV 67 (68)
T ss_dssp TTEEEEEECCEEETTT-EEEEEETTE-EEEEE--SCCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCEEEEEEEEcCCCc-cEEEEECCE-EEECc--CCCCCCEEEEEEEEecCCEEEEEEc
Confidence 4777778888766555 357777653 46664 3579999999999998888888765
No 20
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=83.38 E-value=12 Score=37.65 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEe-----ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeec-CCcc-hHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPF-ILEH 178 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~-----g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~-~P~~-i~~~ 178 (516)
...+.++.++-++.|.+.|++.|-+. +.-.+.+|.. ...-.+.++++.+..+ ...+..+ .|.. ..+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~-~~~~~e~l~~i~~~~~-----~~~i~~l~~p~~~~~~~ 98 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFG-RHTDLEYIEAVAGEIS-----HAQIATLLLPGIGSVHD 98 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCC-SSCHHHHHHHHHTTCS-----SSEEEEEECBTTBCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCC-CCCHHHHHHHHHhhCC-----CCEEEEEecCCcccHHH
Confidence 45689999999999999999999884 1111222322 1235677777765433 1223222 4422 1223
Q ss_pred HHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 010162 179 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 258 (516)
Q Consensus 179 l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi 258 (516)
+. ...+.+ ++.+++.+ +.++ .+...+.++.+++. |+.+..++.-. |.-+++.+.+.++.+
T Consensus 99 i~---~a~~aG--vd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~ 158 (345)
T 1nvm_A 99 LK---NAYQAG--ARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLM 158 (345)
T ss_dssp HH---HHHHHT--CCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHH
T ss_pred HH---HHHhCC--cCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHH
Confidence 32 223333 56677764 3332 25678889999999 99888887654 567788999999999
Q ss_pred HhcCCCeEEEE
Q 010162 259 KEYKFPQVHIS 269 (516)
Q Consensus 259 ~el~~d~v~if 269 (516)
.+.+.+.+.+-
T Consensus 159 ~~~Ga~~i~l~ 169 (345)
T 1nvm_A 159 ESYGATCIYMA 169 (345)
T ss_dssp HHHTCSEEEEE
T ss_pred HHCCCCEEEEC
Confidence 99998866553
No 21
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=82.95 E-value=5 Score=30.84 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=40.3
Q ss_pred CCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEE
Q 010162 311 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 369 (516)
Q Consensus 311 vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i 369 (516)
.|..+++.|+....+| .-+|+..++ .++++ ...+|+.|.++|+........|+++
T Consensus 15 ~~~~~~v~I~~l~~~G-~Gva~~~g~-~vfV~--~alPGE~V~v~i~k~kk~~~~a~~~ 69 (70)
T 1yvc_A 15 AGKEYEVTIEDMGKGG-DGIARIDGF-VVFVP--NAEKGSVINVKVTAVKEKFAFAERV 69 (70)
T ss_dssp TTCEEEEECCEECTTS-CEEEEETTE-EEEET--TCCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCEEEEEEEEcCCCc-cEEEEECCE-EEEcc--CCCCCCEEEEEEEEeeCCeEEEEEe
Confidence 4777788888765444 347777653 46664 4679999999999988888777754
No 22
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=80.72 E-value=20 Score=35.99 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHH-HHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh---CCCCCCceEEEeecCCcchHHHHHH
Q 010162 106 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 181 (516)
Q Consensus 106 rsr~~e~Iv~EI~-~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~---i~~~~~~~iri~~~~P~~i~~~l~e 181 (516)
...+.++.++-++ .|.+.|++.|-+... ..+.+ -.+.++++.+. +. .....++..+-+.. +.
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~---~~~~~----~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~--~~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASA---RVSKG----ELETVQKIMEWAATEQ--LTERIEILGFVDGN--KT--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEET---TSCTT----HHHHHHHHHHHHHHTT--CGGGEEEEEESSTT--HH---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCC---CCChh----HHHHHHHHHhhhhhhc--cCCCCeEEEEccch--hh---
Confidence 4578999999999 999999999987653 11111 13445555431 11 11233444333322 12
Q ss_pred HHHHHcCCCCccEEEecccCCCH-HHHHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC---CCHHHHHHHH
Q 010162 182 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTV 255 (516)
Q Consensus 182 L~~l~~~~~~~~~i~iGlQSgsd-~vLk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPG---ETeedf~etl 255 (516)
+....+.+ ...+++-+ +.|+ ...+.+|+.. ..+.+.+.++.+++. |+.+..++.. +|. -+.+.+.+.+
T Consensus 102 i~~a~~~g--~~~v~i~~-~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~ 175 (337)
T 3ble_A 102 VDWIKDSG--AKVLNLLT-KGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHT--CCEEEEEE-ECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHH
T ss_pred HHHHHHCC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHH
Confidence 22223333 56777755 3455 4455666643 456777888888998 9988877764 222 3456677777
Q ss_pred HHHHhcCCCeEEEE
Q 010162 256 NLIKEYKFPQVHIS 269 (516)
Q Consensus 256 ~fi~el~~d~v~if 269 (516)
+.+.+.+.+.+.+-
T Consensus 176 ~~~~~~Ga~~i~l~ 189 (337)
T 3ble_A 176 EHLSKEHIERIFLP 189 (337)
T ss_dssp HHHHTSCCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 78888898876654
No 23
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=76.71 E-value=13 Score=38.45 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=42.7
Q ss_pred cEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeecc
Q 010162 313 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 373 (516)
Q Consensus 313 ~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~ 373 (516)
..+++.|+....+| .-+||..+. .|+|+ ...+|+.|.|+|++.......|++++...
T Consensus 15 ~~~~~~i~~l~~~G-~Gv~~~~g~-~vfV~--~alpGe~v~~~i~~~~~~~~~~~~~~i~~ 71 (433)
T 1uwv_A 15 QIITVSVNDLDSFG-QGVARHNGK-TLFIP--GLLPQENAEVTVTEDKKQYARAKVVRRLS 71 (433)
T ss_dssp CCEEEEEEEECTTS-EEEEEETTE-EEEEE--TCCTTCEEEEEEEEECSSEEEEEEEEECC
T ss_pred CEEEEEEEEecCCC-ceEEEeCCE-EEEcC--CCCCCCEEEEEEEeecCCceeEEeccccC
Confidence 44678888776555 357887654 46664 46799999999999988888999887654
No 24
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=75.91 E-value=22 Score=35.54 Aligned_cols=143 Identities=10% Similarity=-0.069 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHH-HHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE-IAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~e-L~~ 184 (516)
...+.++.++-++.|.+.|++.|-... +....+ -.+.++++.+.++. . ++..+-+.. .+.+.. +..
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~~----d~e~v~~i~~~~~~---~--~i~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSPG----DFNSVVEITKAVTR---P--TICALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCHH----HHHHHHHHHHHCCS---S--EEEEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHh----HHHHHHHHHHhCCC---C--EEEEeecCC-HHHHHHHHHh
Confidence 456889999999999999999998753 222221 13445666655432 2 333221111 112221 222
Q ss_pred HHcCCCCccEEEecccCCCHHH-HHhcCC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAV-LSAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~v-Lk~MnR--~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el 261 (516)
+... +.+.+++-+ |.||-- .+.+|+ ....+.+.+.++.+++. |..+..+...+. --+++.+.+.++.+.+.
T Consensus 90 l~~a--g~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~-~~~~~~~~~~~~~~~~~ 163 (325)
T 3eeg_A 90 LRFA--KRSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAG-RADQAFLARMVEAVIEA 163 (325)
T ss_dssp HTTC--SSEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGG-GSCHHHHHHHHHHHHHH
T ss_pred hccc--CCCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEccccc-cchHHHHHHHHHHHHhc
Confidence 2222 366777654 446544 344554 34678888999999998 887654443332 23456666777777888
Q ss_pred CCCeEE
Q 010162 262 KFPQVH 267 (516)
Q Consensus 262 ~~d~v~ 267 (516)
+.+.+.
T Consensus 164 G~~~i~ 169 (325)
T 3eeg_A 164 GADVVN 169 (325)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 887554
No 25
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=73.98 E-value=36 Score=35.40 Aligned_cols=142 Identities=12% Similarity=0.106 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
.+.+.++-++-++.|.+.|+++|-... +.... ...+.++.+.+ .... ..+ +....+.. +. +...
T Consensus 56 ~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~asp----~d~~~~~~i~~-~~~~--~~v-~~~~r~~~--~d---i~~A 119 (423)
T 3ivs_A 56 AFFDTEKKIQIAKALDNFGVDYIELTS---PVASE----QSRQDCEAICK-LGLK--CKI-LTHIRCHM--DD---ARVA 119 (423)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSCH----HHHHHHHHHHT-SCCS--SEE-EEEEESCH--HH---HHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEee---cccCH----HHHHHHHHHHh-cCCC--CEE-EEeeccCh--hh---HHHH
Confidence 468999999999999999999998743 22221 23455666653 2211 111 12223321 12 2222
Q ss_pred HcCCCCccEEEecccCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~vLk-~MnR~--~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
...+ .+.+++-+ |.|+-..+ .+++. ...+.+.+.++.+++. |+.+..+..-++ .-+++.+.+.++.+.+.+
T Consensus 120 ~~aG--~~~V~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~G 193 (423)
T 3ivs_A 120 VETG--VDGVDVVI-GTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKIG 193 (423)
T ss_dssp HHTT--CSEEEEEE-EC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHHC
T ss_pred HHcC--CCEEEEEe-eccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHhC
Confidence 3333 66777765 34443332 23332 2467778899999999 998888877776 456788888999999999
Q ss_pred CCeEEEE
Q 010162 263 FPQVHIS 269 (516)
Q Consensus 263 ~d~v~if 269 (516)
.+.+.+-
T Consensus 194 a~~i~l~ 200 (423)
T 3ivs_A 194 VNRVGIA 200 (423)
T ss_dssp CSEEEEE
T ss_pred CCccccC
Confidence 8876543
No 26
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=72.96 E-value=29 Score=35.40 Aligned_cols=146 Identities=14% Similarity=0.023 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
.+.+.++-++-++.|.+.|++.|-... +....+ -.+.++++.+.++. ....-+.-.++.++... +.++
T Consensus 29 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~~----d~e~v~~i~~~~~~--~~i~~l~r~~~~di~~a---~~al 96 (370)
T 3rmj_A 29 AAMTKEEKIRVARQLEKLGVDIIEAGF---AAASPG----DFEAVNAIAKTITK--STVCSLSRAIERDIRQA---GEAV 96 (370)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEEEE---GGGCHH----HHHHHHHHHTTCSS--SEEEEEEESSHHHHHHH---HHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH----HHHHHHHHHHhCCC--CeEEEEecCCHHHHHHH---HHHH
Confidence 467999999999999999999998654 222111 23456666544331 11111211232222211 2222
Q ss_pred HcCCCCccEEEecccCCCHHH-HHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 186 LRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgsd~v-Lk~MnR~~--t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
. +...+.+++-+ |.||-- .+.+++.. ..+.+.+.++.++++ |..+..+...+. --+.+.+.+.++.+.+.+
T Consensus 97 ~--~ag~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~G 170 (370)
T 3rmj_A 97 A--PAPKKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEAG 170 (370)
T ss_dssp T--TSSSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHHT
T ss_pred h--hCCCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHcC
Confidence 2 23367788766 556544 44565532 334455566777777 665443333222 234566777778888889
Q ss_pred CCeEEEE
Q 010162 263 FPQVHIS 269 (516)
Q Consensus 263 ~d~v~if 269 (516)
.+.+.+-
T Consensus 171 a~~i~l~ 177 (370)
T 3rmj_A 171 ATTINIP 177 (370)
T ss_dssp CCEEEEE
T ss_pred CCEEEec
Confidence 8876543
No 27
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=68.56 E-value=3 Score=25.88 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.2
Q ss_pred cccccCCCCCCcccC
Q 010162 403 SSACSNEPDPSACGL 417 (516)
Q Consensus 403 ~~~~~~~~~~~~~~~ 417 (516)
.|.||. .++|.|+.
T Consensus 2 ~CgCs~-tgtC~Cg~ 15 (26)
T 1t2y_A 2 DCGCSG-ASSCNCGS 15 (26)
T ss_dssp CCSCSS-TTTCCCSS
T ss_pred CcccCC-CccccCCC
Confidence 577777 77888773
No 28
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=67.75 E-value=7.6 Score=40.40 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCCcEEEEEEEEEecCCceEEEeccCcEEEEECCCCCCCCCeEEEEEEEeecceEEEEEEeecc
Q 010162 310 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 373 (516)
Q Consensus 310 ~vG~~~~vlve~~~~~~~~~~gr~~~~~~v~~~~~~~~~G~~~~v~I~~~~~~~l~g~~i~~~~ 373 (516)
..|+.+++.|+....+| .-+|| .|+|+ ...+|+.|.|+|++.......|++++...
T Consensus 16 ~~~~~~~~~I~~l~~~G-~Gv~~-----~vfV~--~alPGe~v~~~i~~~k~~~~~a~~~~v~~ 71 (425)
T 2jjq_A 16 PRGSHMRGVIRKLNDDG-FGVLK-----GILVP--FSAPGDEIIVERVERVKKRRVASQWKLVR 71 (425)
T ss_dssp -----CEEECCEECTTS-CEEET-----TEEET--TCCTTCEEEEEEEEESSSSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEeccCC-eEEEE-----EEEeC--CCCCCCEEEEEEEEecCCceEEEEcccCC
Confidence 34666778888776555 34666 46664 46799999999999988888898887654
No 29
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=62.69 E-value=1.3e+02 Score=31.65 Aligned_cols=137 Identities=8% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCC-----CCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee---------cCC
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---------TNP 172 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~-----~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~---------~~P 172 (516)
..+.++.++-++.|.+.|+..|-..+.-.+ ..+. .-.+.++.+.+.++. ..+.... ..|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~----d~~e~l~~i~~~~~~---~~l~~l~R~~N~~G~~~~~ 98 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGE----DPWQRLRLLKQAMPN---TPLQMLLRGQNLLGYRHYA 98 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCC----CHHHHHHHHHHHCSS---SCEEEEECGGGTTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCC----CHHHHHHHHHHhCCC---CeEEEEeccccccCccccc
Confidence 457788888888898899999998764221 1122 245667777665542 2222111 113
Q ss_pred cchHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHH
Q 010162 173 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDED 250 (516)
Q Consensus 173 ~~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~--IvGfPGETeed 250 (516)
+++.+.. +.....++ ...+++-. +.|+- +.+.+.++.+++. |..+..++ ..|.+ -+.+.
T Consensus 99 ddv~~~~--v~~a~~~G--vd~i~if~-~~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~ 159 (464)
T 2nx9_A 99 DDVVDTF--VERAVKNG--MDVFRVFD-AMNDV-----------RNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQT 159 (464)
T ss_dssp HHHHHHH--HHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHHH
T ss_pred chhhHHH--HHHHHhCC--cCEEEEEE-ecCHH-----------HHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHHH
Confidence 3333333 33333444 56666543 33332 5678899999999 98887666 44544 57899
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 010162 251 FNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 251 f~etl~fi~el~~d~v~if 269 (516)
+.+.++.+.+.+.+.+.+-
T Consensus 160 ~~~~a~~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 160 WVDVAQQLAELGVDSIALK 178 (464)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEc
Confidence 9999999999998877654
No 30
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=62.34 E-value=1.1e+02 Score=29.21 Aligned_cols=134 Identities=12% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~Gvk--eI~l~g~n~---~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~ 180 (516)
-+.+..++.+|++.+.+.|++ .+-+.++.| .++| .++++.+.+..+. ....+.+...+|...-+.+
T Consensus 35 lsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~~i~~~- 105 (246)
T 3inp_A 35 LSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDALIESF- 105 (246)
T ss_dssp GGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHHHHHHH-
T ss_pred hcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHHHHHHH-
Confidence 456778889999999988876 556667654 2333 3566777654421 1245666666774432222
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 260 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~e 260 (516)
.+.+ +.++++..|+.+ +..+.++.+|++ |+.+...+--+-| .+.+++.++
T Consensus 106 -----~~aG--Ad~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gvalnp~Tp---~e~l~~~l~---- 155 (246)
T 3inp_A 106 -----AKAG--ATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLALNPATG---IDCLKYVES---- 155 (246)
T ss_dssp -----HHHT--CSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEEECTTCC---SGGGTTTGG----
T ss_pred -----HHcC--CCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEEecCCCC---HHHHHHHHh----
Confidence 2233 678999988753 246788888998 9887776543333 333332222
Q ss_pred cCCCeEEEEEeeecCCCcccc
Q 010162 261 YKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 261 l~~d~v~if~~sp~pGTpa~~ 281 (516)
.+|.+- ..+..||.--.+
T Consensus 156 -~vD~Vl--vMsV~PGfgGQ~ 173 (246)
T 3inp_A 156 -NIDRVL--IMSVNPGFGGQK 173 (246)
T ss_dssp -GCSEEE--EECSCTTC--CC
T ss_pred -cCCEEE--EeeecCCCCCcc
Confidence 256554 446778874433
No 31
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=61.47 E-value=1.1e+02 Score=30.99 Aligned_cols=138 Identities=7% Similarity=0.076 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEee-cCCcchHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAE 184 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~-~~P~~i~~~l~eL~~ 184 (516)
.+.+.++.++-++.|.+.|++.|-... +.... ...+.++.+.+. .. . ..+.. .+. . .+.+ ..
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~~----~~~~~~~~i~~~-~~-~---~~v~~~~r~-~-~~di---~~ 82 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVASP----QSRKDAEVLASL-GL-K---AKVVTHIQC-R-LDAA---KV 82 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSCH----HHHHHHHHHHTS-CC-S---SEEEEEEES-C-HHHH---HH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCCH----HHHHHHHHHHhc-CC-C---cEEEEEccc-C-hhhH---HH
Confidence 467899999999999999999998753 22211 234566666532 21 1 12221 111 1 1222 22
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCH----HHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHH
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL----SDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLI 258 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~----e~~~~~I~~lr~~~pG--i~i~td~IvGfPGETeedf~etl~fi 258 (516)
..+.+ .+.+++-+ +.|+-..+.+ +.+. +.+.+.++.+++. | +.+..++.-++ .-+.+.+.+.++.+
T Consensus 83 a~~~g--~~~v~i~~-~~s~~~~~~~--~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 83 AVETG--VQGIDLLF-GTSKYLRAPH--GRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHTT--CSEEEEEE-CC----------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHH
T ss_pred HHHcC--CCEEEEEe-ccCHHHHHHh--CCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHH
Confidence 23333 66777765 5666555533 3444 5578888999999 7 88888887654 56778888889999
Q ss_pred HhcCCCeEEEE
Q 010162 259 KEYKFPQVHIS 269 (516)
Q Consensus 259 ~el~~d~v~if 269 (516)
.+. .+.+.+-
T Consensus 155 ~~~-a~~i~l~ 164 (382)
T 2ztj_A 155 APY-VDRVGLA 164 (382)
T ss_dssp GGG-CSEEEEE
T ss_pred HHh-cCEEEec
Confidence 888 8866654
No 32
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=60.85 E-value=1.4e+02 Score=31.92 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCceEEEe--------ec-CCcchH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIG--------MT-NPPFIL 176 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg-~d~~~~l~eLL~~I~~~i~~~~~~~iri~--------~~-~P~~i~ 176 (516)
..+.++.++-++.|.+.|++.|-..+.-.+... +-....-.+.++.+.+.++. ..+... +. .|+++.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~---~~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPN---SRLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTT---SCEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCC---CEEEEEeccccccCcccCccccc
Confidence 467888888899999999999998764221000 00011245667777665542 222221 11 133333
Q ss_pred HHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 010162 177 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 254 (516)
Q Consensus 177 ~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~--IvGfPGETeedf~et 254 (516)
+.. +.....++ ...+++-. +.|+- +.+.+.++.+++. |..+...+ ..|. .-+.+.+.+.
T Consensus 120 ~~~--ve~a~~aG--vd~vrIf~-s~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~-~~~~e~~~~~ 180 (539)
T 1rqb_A 120 DRF--VDKSAENG--MDVFRVFD-AMNDP-----------RNMAHAMAAVKKA--GKHAQGTICYTISP-VHTVEGYVKL 180 (539)
T ss_dssp HHH--HHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCST-TCCHHHHHHH
T ss_pred HHH--HHHHHhCC--CCEEEEEE-ehhHH-----------HHHHHHHHHHHHC--CCeEEEEEEeeeCC-CCCHHHHHHH
Confidence 333 33334444 56666543 33332 5678899999999 88776555 4454 4578899999
Q ss_pred HHHHHhcCCCeEEEE
Q 010162 255 VNLIKEYKFPQVHIS 269 (516)
Q Consensus 255 l~fi~el~~d~v~if 269 (516)
++.+.+.+.+.+.+-
T Consensus 181 a~~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 181 AGQLLDMGADSIALK 195 (539)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEeC
Confidence 999999998866554
No 33
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=59.21 E-value=80 Score=30.57 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 185 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l 185 (516)
+..+.+.+++.++.+.+.|..-|-+.++. -..+....+..+++.+.+... ..+.+.+.+|..+..-+ +.
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s---~~~eE~~rv~~vi~~l~~~~~----~pisIDT~~~~v~~aal----~a 97 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGP---TADDPVRVMEWLVKTIQEVVD----LPCCLDSTNPDAIEAGL----KV 97 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCS---CSSCHHHHHHHHHHHHHHHCC----CCEEEECSCHHHHHHHH----HH
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCc---CchhHHHHHHHHHHHHHHhCC----CeEEEeCCCHHHHHHHH----Hh
Confidence 34567999999999999999888776643 112222346667777765432 34666666553322111 11
Q ss_pred HcCCCCccEEEecccCCC--HHHHHh----------cC---C--CCC----HHHHHHHHHHHHHhCCCCE---EEEEEEE
Q 010162 186 LRHPCVYSFLHVPVQSGS--DAVLSA----------MN---R--EYT----LSDFRTVVDTLIELVPGMQ---IATDIIC 241 (516)
Q Consensus 186 ~~~~~~~~~i~iGlQSgs--d~vLk~----------Mn---R--~~t----~e~~~~~I~~lr~~~pGi~---i~td~Iv 241 (516)
.....+.+. +..+. + ++++.. |. + +.+ .+.+.+.++.+.++ |+. +-.|=.+
T Consensus 98 ~~Ga~iINd--vs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg~ 172 (271)
T 2yci_X 98 HRGHAMINS--TSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPLI 172 (271)
T ss_dssp CCSCCEEEE--ECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCC
T ss_pred CCCCCEEEE--CCCCc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecCC
Confidence 111112222 32222 2 344432 11 2 224 45567777888888 885 8999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 010162 242 GFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 242 GfPGETeedf~etl~fi~el~ 262 (516)
||.|-+.+.-.++++.++.++
T Consensus 173 gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 173 LPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCTTTSTHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 998888876666666666654
No 34
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=52.58 E-value=71 Score=30.02 Aligned_cols=134 Identities=12% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhC-CCCCCceEEEeecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~Gvk--eI~l~g~n~---~~yg~d~~~~l~eLL~~I~~~i-~~~~~~~iri~~~~P~~i~~~l 179 (516)
-+.+..++-++++.+.+.|.+ ++-+.++.| .++| .++++++.+.. + .....+.+...+|...-+.+
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~-~~~~dvhLmv~~p~~~i~~~ 83 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQ-DPFFDMHMMVSKPEQWVKPM 83 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCS-SSCEEEEEECSCGGGGHHHH
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCC-CCcEEEEEEeCCHHHHHHHH
Confidence 355677888999999888887 455566554 2233 44566665542 2 11245566666675543333
Q ss_pred HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 010162 180 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 259 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~ 259 (516)
. +.+ +.++++..|+.+ +..+.++.+++. |+.+...+- |+...+.+++.+
T Consensus 84 ---~---~aG--ad~itvH~Ea~~--------------~~~~~i~~i~~~--G~k~gval~---p~t~~e~l~~~l---- 132 (228)
T 3ovp_A 84 ---A---VAG--ANQYTFHLEATE--------------NPGALIKDIREN--GMKVGLAIK---PGTSVEYLAPWA---- 132 (228)
T ss_dssp ---H---HHT--CSEEEEEGGGCS--------------CHHHHHHHHHHT--TCEEEEEEC---TTSCGGGTGGGG----
T ss_pred ---H---HcC--CCEEEEccCCch--------------hHHHHHHHHHHc--CCCEEEEEc---CCCCHHHHHHHh----
Confidence 2 223 678888888753 246678888998 887766543 443333332222
Q ss_pred hcCCCeEEEEEeeecCCCcccc
Q 010162 260 EYKFPQVHISQFYPRPGTPAAR 281 (516)
Q Consensus 260 el~~d~v~if~~sp~pGTpa~~ 281 (516)
. .+|.+. ..+..||.--..
T Consensus 133 ~-~~D~Vl--~msv~pGf~Gq~ 151 (228)
T 3ovp_A 133 N-QIDMAL--VMTVEPGFGGQK 151 (228)
T ss_dssp G-GCSEEE--EESSCTTTCSCC
T ss_pred c-cCCeEE--EeeecCCCCCcc
Confidence 1 256554 455577874433
No 35
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=51.45 E-value=1.8e+02 Score=28.27 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~------~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l 179 (516)
+..+++.+++.++.+.+.|..-|-+.+..+. -|... ...+..+++.+.+... ..+.+.+.+|..+..-+
T Consensus 33 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-Pga~~v~~~eE~~rv~pvi~~l~~~~~----~piSIDT~~~~va~aAl 107 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINAGATIIDVGGESTR-PGAAEVSVEEELQRVIPVVEAIAQRFE----VWISVDTSKPEVIRESA 107 (282)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHHHHCC----CEEEEECCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhhcC----CeEEEeCCCHHHHHHHH
Confidence 4457899999999999999998888775331 12111 1224556666654332 35666655543322111
Q ss_pred ------------------HHHHHHHcCCCCccEEEecccCCCHHHHHhcCCC--CC------HHHHHHHHHHHHHhCCCC
Q 010162 180 ------------------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YT------LSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 180 ------------------~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~--~t------~e~~~~~I~~lr~~~pGi 233 (516)
.++.+ +.+ ++.+-+..+ |.+ +.|... |. .+.+.+.++.+.++ |+
T Consensus 108 ~aGa~iINdvsg~~d~~~~~~~a--~~~--~~vVlmh~~-G~p---~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~--Gi 177 (282)
T 1aj0_A 108 KVGAHIINDIRSLSEPGALEAAA--ETG--LPVCLMHMQ-GNP---KTMQEAPKYDDVFAEVNRYFIEQIARCEQA--GI 177 (282)
T ss_dssp HTTCCEEEETTTTCSTTHHHHHH--HHT--CCEEEECCS-SCT---TCCSCCCCCSCHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HcCCCEEEECCCCCCHHHHHHHH--HhC--CeEEEEccC-CCC---ccccccCccchHHHHHHHHHHHHHHHHHHc--CC
Confidence 11111 111 233333322 111 112211 11 56778888899988 88
Q ss_pred E---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 234 Q---IATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 234 ~---i~td~IvGfPGETeedf~etl~fi~el 261 (516)
. +-.|--+|| +.|.++-.++++.+.++
T Consensus 178 ~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 178 AKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp CGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred ChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 5 899988898 88887666666655554
No 36
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=50.81 E-value=86 Score=31.83 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CCceEEEe
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRIG 168 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~------------------~~~~iri~ 168 (516)
..+.+..++++++|.+.|..-|.++-++.. .++.+..|.+..+.+ +...+|+
T Consensus 42 T~D~~atv~Qi~~l~~aG~diVRvavp~~~---------~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRI- 111 (366)
T 3noy_A 42 THDVEATLNQIKRLYEAGCEIVRVAVPHKE---------DVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRI- 111 (366)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEECCSHH---------HHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEE-
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCChH---------HHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEE-
Confidence 478999999999999999988877653211 122333333222110 1123443
Q ss_pred ecCCcch--HHHHHHHHHHHcCCCCccEEEecccCC--CHHHHHhcCCCC---CHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 010162 169 MTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSG--SDAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIIC 241 (516)
Q Consensus 169 ~~~P~~i--~~~l~eL~~l~~~~~~~~~i~iGlQSg--sd~vLk~MnR~~---t~e~~~~~I~~lr~~~pGi~i~td~Iv 241 (516)
||.++ .+.+.++.+..+.... -+-||+-+| ++++|+++..+. -++..++.++.+.+. |+ .++++
T Consensus 112 --NPGNig~~~~~~~vv~~ak~~~~--piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~--gf---~~ivi 182 (366)
T 3noy_A 112 --NPGNIGKEEIVREIVEEAKRRGV--AVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKW--GF---TNYKV 182 (366)
T ss_dssp --CHHHHSCHHHHHHHHHHHHHHTC--EEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TC---CCEEE
T ss_pred --CCcccCchhHHHHHHHHHHHcCC--CEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhC--CC---CeEEE
Confidence 56555 3334444443333222 355665554 678888886443 245556667777777 76 56777
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 010162 242 GFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 242 GfPGETeedf~etl~fi~el 261 (516)
-+..-+..+..+..+.+.+.
T Consensus 183 S~K~S~v~~~i~ayr~la~~ 202 (366)
T 3noy_A 183 SIKGSDVLQNVRANLIFAER 202 (366)
T ss_dssp EEECSSHHHHHHHHHHHHHH
T ss_pred eeecCChHHHHHHHHHHHhc
Confidence 77766666666666655543
No 37
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=43.81 E-value=88 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=20.7
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 239 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~ 239 (516)
+++|...+++..+. +....+.+.++++.+++. |+.+.+|+
T Consensus 55 f~~IFTSL~~~e~~------~~~~~~~~~~l~~~a~~~--g~~vi~DV 94 (385)
T 1x7f_A 55 FSRIFTCLLSVNRP------KEEIVAEFKEIINHAKDN--NMEVILDV 94 (385)
T ss_dssp EEEEEEEECCC--------------HHHHHHHHHHHHT--TCEEEEEE
T ss_pred CCEEEccCCccCCC------hHHHHHHHHHHHHHHHHC--CCEEEEEC
Confidence 66666666655432 112335566666667766 66666655
No 38
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=42.79 E-value=1.6e+02 Score=28.90 Aligned_cols=138 Identities=13% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC------CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 180 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~------~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~ 180 (516)
..+++.+++.++.+.+.|..-|-+.+..+.. |.... ..+..+++.+.+... ..+.+.+.+|..+..-+
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP-ga~~v~~~eE~~RvvpvI~~l~~~~~----vpiSIDT~~~~V~~aAl- 132 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRP-GFAKVSVEEEIKRVVPMIQAVSKEVK----LPISIDTYKAEVAKQAI- 132 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC-----CCCCCHHHHHHHHHHHHHHHHHHSC----SCEEEECSCHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcCC----ceEEEeCCCHHHHHHHH-
Confidence 3468999999999999999988887653322 21111 123444466654332 35666665553322211
Q ss_pred HHHHHHcCCCCccEE-EecccCCCHHHHHhc----------C-CCC-C--------HHHHHHHHHHHHHhCCCCE---EE
Q 010162 181 EIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM----------N-REY-T--------LSDFRTVVDTLIELVPGMQ---IA 236 (516)
Q Consensus 181 eL~~l~~~~~~~~~i-~iGlQSgsd~vLk~M----------n-R~~-t--------~e~~~~~I~~lr~~~pGi~---i~ 236 (516)
+.+ ...| ++.-...+++++..+ . ++. . .+.+.+.++.+.++ |+. +-
T Consensus 133 ------~aG--a~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~Ii 202 (297)
T 1tx2_A 133 ------EAG--AHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENII 202 (297)
T ss_dssp ------HHT--CCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEE
T ss_pred ------HcC--CCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEE
Confidence 112 1122 222222345554321 1 221 0 35567778888888 885 88
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 237 TDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 237 td~IvGfPGETeedf~etl~fi~el 261 (516)
.|--+|| +.|.++-.++++.+.++
T Consensus 203 lDPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 203 LDPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp EECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred EeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 8888888 77777555555555544
No 39
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=41.44 E-value=2.7e+02 Score=27.35 Aligned_cols=126 Identities=11% Similarity=0.104 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEe-e--cCCc--chHHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-M--TNPP--FILEHLK 180 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~-~--~~P~--~i~~~l~ 180 (516)
+.++.+++.+.+..+.+.|+++|..+.+|....+......-.+|++.|.+. . .+.+... | .+|. ....++.
T Consensus 92 ~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~---~f~IgvA~yPE~Hp~a~~~~~d~~ 167 (304)
T 3fst_A 92 IDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-A---DFDISVAAYPEVHPEAKSAQADLL 167 (304)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-C---CCEEEEEECTTCCTTCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-C---CCeEEEEeCCCcCCCCCCHHHHHH
Confidence 457899999999999999999999887676654422224467787777543 2 2344333 2 2332 2222333
Q ss_pred HHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHH
Q 010162 181 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 254 (516)
Q Consensus 181 eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGf-PGETeedf~et 254 (516)
.|.+-.++| ..++- . .=-|+.+.+.+.++.+++. |+. .-+|.|+ |=-+...+...
T Consensus 168 ~Lk~KvdAG--Adf~i-----------T--Q~ffD~~~~~~f~~~~r~~--Gi~--vPIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 168 NLKRKVDAG--ANRAI-----------T--QFFFDVESYLRFRDRCVSA--GID--VEIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHHHT--CCEEE-----------E--CCCSCHHHHHHHHHHHHHT--TCC--SCEECEECCCSCHHHHHHH
T ss_pred HHHHHHHcC--CCEEE-----------e--CccCCHHHHHHHHHHHHhc--CCC--CcEEEEecccCCHHHHHHH
Confidence 333322333 33321 0 1136889999999999998 763 3466664 44556655444
No 40
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=39.78 E-value=21 Score=31.75 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=31.4
Q ss_pred CHHHHHHHhcCC---CcEEEEccccCcch-hhhhCCcce-EEcCCC-hhHHHHHHHHH
Q 010162 1 MDTLIAKCKSAK---KPLVVAGCVPQGSR-DLKELEGVS-IVGVQQ-IDRVVEVVEET 52 (516)
Q Consensus 1 m~~iIr~~k~~~---~~VVV~GC~a~~~~-~~~~~p~vD-vvG~~~-~~~i~~ll~~~ 52 (516)
|.++++.+++.+ .+|+|||-.++... .+++ .++| +++.+. .....+.+.+.
T Consensus 86 ~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~-~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 86 MKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRS-LGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHH-TTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHH-CCCcEEECCCCCHHHHHHHHHHH
Confidence 356778887754 57999996554332 2334 4788 787654 24555666554
No 41
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=37.64 E-value=1.4e+02 Score=28.09 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcch--HHHHHHHHHHH
Q 010162 109 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 186 (516)
Q Consensus 109 ~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i--~~~l~eL~~l~ 186 (516)
..+.+.++|+.+.+.|+..|+|.-- +.-|. .+ .+.++++.+.... ..+.|...- +.+ .+....+..+.
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~L--t~dg~---iD-~~~~~~Li~~a~~---~~vTFHRAF-D~~~~~d~~~ale~L~ 143 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGIL--TSNNH---ID-TEAIEQLLPATQG---LPLVFHMAF-DVIPKSDQKKSIDQLV 143 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCB--CTTSS---BC-HHHHHHHHHHHTT---CCEEECGGG-GGSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE--CCCCC---cC-HHHHHHHHHHhCC---CeEEEECch-hccCCcCHHHHHHHHH
Confidence 4678889999999999999998542 21121 11 2334444332221 233443211 112 12222233344
Q ss_pred cCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE
Q 010162 187 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 266 (516)
Q Consensus 187 ~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v 266 (516)
..+ +.+|- =||.+. ..+..+-.+.++.+.+...+ ...+|.|- |=|.+.+.+ ++++.++..+
T Consensus 144 ~lG--v~rIL---TSG~~~-------~~~a~~g~~~L~~Lv~~a~~---ri~Im~Gg-GV~~~Ni~~---l~~~tGv~e~ 204 (224)
T 2bdq_A 144 ALG--FTRIL---LHGSSN-------GEPIIENIKHIKALVEYANN---RIEIMVGG-GVTAENYQY---ICQETGVKQA 204 (224)
T ss_dssp HTT--CCEEE---ECSCSS-------CCCGGGGHHHHHHHHHHHTT---SSEEEECS-SCCTTTHHH---HHHHHTCCEE
T ss_pred HcC--CCEEE---CCCCCC-------CCcHHHHHHHHHHHHHhhCC---CeEEEeCC-CCCHHHHHH---HHHhhCCCEE
Confidence 443 55653 222221 01123333344444332223 34678774 767766654 3556789999
Q ss_pred EEEEeeecCCCccccC
Q 010162 267 HISQFYPRPGTPAARM 282 (516)
Q Consensus 267 ~if~~sp~pGTpa~~~ 282 (516)
|.....-.||.|+...
T Consensus 205 H~s~i~~~~~~~~~~~ 220 (224)
T 2bdq_A 205 HGTRITQMAGDPLEHH 220 (224)
T ss_dssp EETTCC----------
T ss_pred ccccccCCCCCcchhc
Confidence 9988888899988643
No 42
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=36.71 E-value=21 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.6
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHh
Q 010162 480 MGEWGVVDRALLGGMLVSFLIILALLIHVG 509 (516)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
-+-|-.||--.+-=++..+++++|++||+.
T Consensus 7 ~KIWlvvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 7 YKIWLVINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp GGHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCceeHHHHHHHHHHHHHHHHHH
Confidence 367888887666666777888999999975
No 43
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=35.66 E-value=2.2e+02 Score=27.95 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC-CC--C--c-CCCHHHHHHHHHHhCCCCCCceEEEeecCCc------
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--D--I-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP------ 173 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y-g~--d--~-~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~------ 173 (516)
+.++.+++.+.+..+.+.|+++|..+.+|.... |. + . .....+|++.+.+..+ + .+.+... .+|+
T Consensus 81 ~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g-~-~f~igvA-~yPE~Hp~~~ 157 (310)
T 3apt_A 81 AGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYG-D-RVSVGGA-AYPEGHPESE 157 (310)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHG-G-GSEEEEE-ECTTCCTTSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-C-CeEEEEE-eCCCcCCCCC
Confidence 457899999999999999999998777676543 30 1 0 1246677777654312 1 1333332 4442
Q ss_pred chHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 010162 174 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 174 ~i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi 233 (516)
....++..|.+-.++| ..++- -| --|+.+.+.+.++.+++. |+
T Consensus 158 ~~~~d~~~Lk~Kv~aG--Adf~i--TQ-----------~ffD~~~~~~f~~~~r~~--Gi 200 (310)
T 3apt_A 158 SLEADLRHFKAKVEAG--LDFAI--TQ-----------LFFNNAHYFGFLERARRA--GI 200 (310)
T ss_dssp CHHHHHHHHHHHHHHH--CSEEE--EC-----------CCSCHHHHHHHHHHHHHT--TC
T ss_pred CHHHHHHHHHHHHHcC--CCEEE--ec-----------ccCCHHHHHHHHHHHHHc--CC
Confidence 2222333232222222 22221 01 136778888888888887 64
No 44
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=30.44 E-value=3.8e+02 Score=25.89 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC---cCC---CHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d---~~~---~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l 179 (516)
+..+++.+++.++.+.+.|..-|-+.+..+. -|.. ... .+..+++.+.+. ...+.+.+.+|..+..-+
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-pga~~v~~~eE~~Rv~pvi~~l~~~-----~~piSIDT~~~~va~aAl 97 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSR-PGATRVDPAVETSRVIPVVKELAAQ-----GITVSIDTMRADVARAAL 97 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHT-----TCCEEEECSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCC-CCCCCCCHHHHHHHHHHHHHHhhcC-----CCEEEEeCCCHHHHHHHH
Confidence 3467999999999999999998888774322 1211 112 244455555431 134666655543221111
Q ss_pred HHHHHHHcCCCCccEE-EecccCCCHHHHHh-------------------cCCC---C-C-----HHHHHHHHHHHHHhC
Q 010162 180 KEIAEVLRHPCVYSFL-HVPVQSGSDAVLSA-------------------MNRE---Y-T-----LSDFRTVVDTLIELV 230 (516)
Q Consensus 180 ~eL~~l~~~~~~~~~i-~iGlQSgsd~vLk~-------------------MnR~---~-t-----~e~~~~~I~~lr~~~ 230 (516)
+.+ ...| ++.-...+++++.. |.+. | + .+.+.+.++.+.++
T Consensus 98 -------~aG--a~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 167 (280)
T 1eye_A 98 -------QNG--AQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA- 167 (280)
T ss_dssp -------HTT--CCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT-
T ss_pred -------HcC--CCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc-
Confidence 111 1111 11111123333321 1111 1 1 45667788888888
Q ss_pred CCCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 231 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 231 pGi~---i~td~IvGfPGETeedf~etl~fi~el 261 (516)
|+. +-.|=-+|| +.|.++-.++++-+.++
T Consensus 168 -Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 168 -GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred -CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 885 888888887 56766555555555544
No 45
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=30.16 E-value=3.2e+02 Score=24.96 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=48.0
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if 269 (516)
+..|.+...+ +.-..+.++..++.+.++++ |+.+.+--.. + .++.+.+++.++++.+++...+.++
T Consensus 44 ~~~vEl~~~~--------~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~-~-~~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 44 IHYLCIKDFH--------LPLNSTDEQIRAFHDKCAAH--KVTGYAVGPI-Y-MKSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp CCEEEECTTT--------SCTTCCHHHHHHHHHHHHHT--TCEEEEEEEE-E-ECSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEeccc--------CCCCCCHHHHHHHHHHHHHc--CCeEEEEecc-c-cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 7888887652 11234677788888888888 8876542222 1 2789999999999999999988864
No 46
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=27.27 E-value=45 Score=31.75 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=68.5
Q ss_pred CceEEEeecCCcc-hHHHHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHh-CC--------
Q 010162 162 STMLRIGMTNPPF-ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL-VP-------- 231 (516)
Q Consensus 162 ~~~iri~~~~P~~-i~~~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~-~p-------- 231 (516)
..|..+.-.+|+. .+.+. +.++.+++ ...|.+|+ | .+.+.+++.+.++.+|+. .|
T Consensus 7 ~~~~~it~gDP~~~~t~~~--~~~l~~~G--aD~IelG~-S----------~g~t~~~~~~~v~~ir~~~~Pivl~~y~~ 71 (234)
T 2f6u_A 7 RKWRHITKLDPDRTNTDEI--IKAVADSG--TDAVMISG-T----------QNVTYEKARTLIEKVSQYGLPIVVEPSDP 71 (234)
T ss_dssp GGCCEEEEECTTSCCCHHH--HHHHHTTT--CSEEEECC-C----------TTCCHHHHHHHHHHHTTSCCCEEECCSSC
T ss_pred CcceEEEeeCCCccccHHH--HHHHHHcC--CCEEEECC-C----------CCCCHHHHHHHHHHhcCCCCCEEEecCCc
Confidence 4566666667754 33333 34444554 78999999 2 677899999999999873 12
Q ss_pred C-C--EEEEEEEEcCCCCCHHHHH-----HHHHHH----HhcC-----CCeEEEEEeeecCCCccccCC
Q 010162 232 G-M--QIATDIICGFPGETDEDFN-----QTVNLI----KEYK-----FPQVHISQFYPRPGTPAARMK 283 (516)
Q Consensus 232 G-i--~i~td~IvGfPGETeedf~-----etl~fi----~el~-----~d~v~if~~sp~pGTpa~~~~ 283 (516)
+ + .+..-++.-+|.|..++|. +.+..+ ++.+ ++.+..-....-|+|...++.
T Consensus 72 n~i~~gvDg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~ 140 (234)
T 2f6u_A 72 SNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVT 140 (234)
T ss_dssp CCCCCCSSEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHT
T ss_pred chhhcCCCEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEee
Confidence 1 1 2456677788888888887 666333 6666 666654444555777666644
No 47
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=27.18 E-value=23 Score=21.56 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=10.2
Q ss_pred chhhHHHHhhhc
Q 010162 444 QNVIGWLLRKRK 455 (516)
Q Consensus 444 ~~~~~~~~~~~~ 455 (516)
+.+|.|+-|||+
T Consensus 14 P~liSWiK~kr~ 25 (26)
T 3qrx_B 14 PALISWIKRKRQ 25 (26)
T ss_pred hHHHHHHHHHhc
Confidence 578999999985
No 48
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=26.54 E-value=1e+02 Score=28.57 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHHHHcCCCC
Q 010162 112 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 191 (516)
Q Consensus 112 ~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~l~~~~~~ 191 (516)
+.++.++.+.+.|+..+.+.+-|-...+. ..+ ++++++.+.... ..+.-+.++. .+.. ..++..+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~i---pv~v~ggI~~---~~~~---~~~l~~G-- 97 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMDI---KVELSGGIRD---DDTL---AAALATG-- 97 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCSS---EEEEESSCCS---HHHH---HHHHHTT--
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcCC---cEEEECCcCC---HHHH---HHHHHcC--
Confidence 44555577778999999988644322222 236 888888775432 2222222221 1222 2223344
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE------EcCCCCCHHHHHHHHHHHHhcCCCe
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQ 265 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I------vGfPGETeedf~etl~fi~el~~d~ 265 (516)
+..+++|.++..+ .+.+.++++.+.. .+.+..|.- -|....+. +..+.++.+.+.+++.
T Consensus 98 ad~V~lg~~~l~~-----------p~~~~~~~~~~g~---~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 98 CTRVNLGTAALET-----------PEWVAKVIAEHGD---KIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCAR 162 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHGG---GEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCC
T ss_pred CCEEEECchHhhC-----------HHHHHHHHHHcCC---cEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCE
Confidence 7789988755321 2333444443321 234455543 12211222 4445566677788898
Q ss_pred EEEEEee
Q 010162 266 VHISQFY 272 (516)
Q Consensus 266 v~if~~s 272 (516)
+.+....
T Consensus 163 i~~~~~~ 169 (244)
T 1vzw_A 163 YVVTDIA 169 (244)
T ss_dssp EEEEEC-
T ss_pred EEEeccC
Confidence 8776544
No 49
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=26.21 E-value=4e+02 Score=24.78 Aligned_cols=134 Identities=10% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHHHHHH
Q 010162 107 SYTVESLVGRVRTVIADGVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 184 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~Gvke--I~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~eL~~ 184 (516)
+.+.-++-++++.+ +.|+.. +-+.+++|-.. ... -...++.+.+... ......+...+|...-+.+
T Consensus 9 a~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn-~t~---G~~~v~~lr~~~~--~~~dvhLmv~dp~~~i~~~----- 76 (231)
T 3ctl_A 9 CMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPN-LTL---SPFFVSQVKKLAT--KPLDCHLMVTRPQDYIAQL----- 76 (231)
T ss_dssp GSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSC-CCB---CHHHHHHHHTTCC--SCEEEEEESSCGGGTHHHH-----
T ss_pred hCChhhHHHHHHHH-HcCCCEEEEEEEeCccCcc-chh---cHHHHHHHHhccC--CcEEEEEEecCHHHHHHHH-----
Confidence 44566788899998 888774 55666554321 111 2457777765322 2245667667776543333
Q ss_pred HHcCCCCccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 010162 185 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 264 (516)
Q Consensus 185 l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d 264 (516)
.+.+ ..++.+..|+.++ ...+.++.+++. |+.+...+ -|+...+.+++.++ .+|
T Consensus 77 -~~aG--Ad~itvh~Ea~~~-------------~~~~~i~~i~~~--G~k~gv~l---np~tp~~~~~~~l~-----~~D 130 (231)
T 3ctl_A 77 -ARAG--ADFITLHPETING-------------QAFRLIDEIRRH--DMKVGLIL---NPETPVEAMKYYIH-----KAD 130 (231)
T ss_dssp -HHHT--CSEEEECGGGCTT-------------THHHHHHHHHHT--TCEEEEEE---CTTCCGGGGTTTGG-----GCS
T ss_pred -HHcC--CCEEEECcccCCc-------------cHHHHHHHHHHc--CCeEEEEE---ECCCcHHHHHHHHh-----cCC
Confidence 1223 6788888777311 245688899999 98887766 46544444333222 467
Q ss_pred eEEEEEeeecCCCccc
Q 010162 265 QVHISQFYPRPGTPAA 280 (516)
Q Consensus 265 ~v~if~~sp~pGTpa~ 280 (516)
.+-+ ++..||+--.
T Consensus 131 ~Vlv--msV~pGfggQ 144 (231)
T 3ctl_A 131 KITV--MTVDPGFAGQ 144 (231)
T ss_dssp EEEE--ESSCTTCSSC
T ss_pred EEEE--eeeccCcCCc
Confidence 6655 5666776533
No 50
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=25.44 E-value=3.4e+02 Score=26.55 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC---cCC---CHHHHHHHHHHhCCCCCCceEEEeecCCcchHH--
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-- 177 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d---~~~---~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~-- 177 (516)
+..+.+.+++.++.+.+.|..-|-+.++.+.. |.. ... .+..+++.+.+. ...+.+.+.+|..+..
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~~-----~vpiSIDT~~~~Va~aAl 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLSL-----GVPVSVDTRKPEVAEEAL 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHTT-----CSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhC-----CCeEEEECCCHHHHHHHH
Confidence 34578999999999999999988877753322 211 112 244455555421 2456666655433222
Q ss_pred ----------------HHHHHHHHHcCCCCccEEEecccCCCHHHHHhcCCCCC------HHHHHHHHHHHHHhCCCC-E
Q 010162 178 ----------------HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT------LSDFRTVVDTLIELVPGM-Q 234 (516)
Q Consensus 178 ----------------~l~eL~~l~~~~~~~~~i~iGlQSgsd~vLk~MnR~~t------~e~~~~~I~~lr~~~pGi-~ 234 (516)
.+.++. .+.+ +..+-+..+-|.++..... -.|. .+.+.+.++.+.++ |+ .
T Consensus 121 ~aGa~iINdVsg~~d~~m~~v~--a~~~--~~vVlmh~~eG~p~tm~~~-~~y~dv~~ev~~~l~~~i~~a~~~--Gi~~ 193 (294)
T 2dqw_A 121 KLGAHLLNDVTGLRDERMVALA--ARHG--VAAVVMHMPVPDPATMMAH-ARYRDVVAEVKAFLEAQARRALSA--GVPQ 193 (294)
T ss_dssp HHTCSEEECSSCSCCHHHHHHH--HHHT--CEEEEECCSSSCTTTGGGG-CCCSSHHHHHHHHHHHHHHHHHHT--TCSC
T ss_pred HhCCCEEEECCCCCChHHHHHH--HHhC--CCEEEEcCCCCCCcccccc-CccccHHHHHHHHHHHHHHHHHHC--CCCc
Confidence 221111 1112 3344444331222211100 0121 45677788888888 87 4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 010162 235 IATDIICGFPGETDEDFNQTVNLIKEYK 262 (516)
Q Consensus 235 i~td~IvGfPGETeedf~etl~fi~el~ 262 (516)
+-.|=-+|| +.|.++-.++++.+.+++
T Consensus 194 IilDPG~Gf-~kt~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 194 VVLDPGFGF-GKLLEHNLALLRRLDEIV 220 (294)
T ss_dssp EEEECCTTS-SCCHHHHHHHHHTHHHHH
T ss_pred EEEcCCCCc-ccCHHHHHHHHHHHHHHh
Confidence 666666687 788877667777666553
No 51
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=23.81 E-value=1.1e+02 Score=30.56 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=40.6
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCC-C----CCC---cCCCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA-Y----GRD---IGVNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~-y----g~d---~~~~l~eLL~~I~~~i~ 158 (516)
++...|-+| .+++.+++|++.+.+.|++.|.|.|.-... . |.. ...-+.+.++.|.+.++
T Consensus 57 I~SMPGv~r-~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~p 124 (342)
T 1h7n_A 57 IDSLPNINR-IGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFP 124 (342)
T ss_dssp CTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred CCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCC
Confidence 455556554 589999999999999999999998851110 1 111 01125677888877776
No 52
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=23.72 E-value=2.7e+02 Score=27.62 Aligned_cols=143 Identities=11% Similarity=0.181 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHHH-
Q 010162 107 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK- 180 (516)
Q Consensus 107 sr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~-----~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l~- 180 (516)
..+.+.+++.++.+++.|..-|-+.++.+. -|.... ..+..+++.+.+.++ ...+.+.+.+|..+..-+.
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTr-PG~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl~a 136 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAG-PGERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAACAA 136 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHHHh
Confidence 456899999999999999998887664322 231110 123444666655432 2456777665543322221
Q ss_pred --------------HHHHH-HcCCCCccEEEecccCCCHHHHHhcCCC--CC----------HHHHHHHHHHHHHhCCCC
Q 010162 181 --------------EIAEV-LRHPCVYSFLHVPVQSGSDAVLSAMNRE--YT----------LSDFRTVVDTLIELVPGM 233 (516)
Q Consensus 181 --------------eL~~l-~~~~~~~~~i~iGlQSgsd~vLk~MnR~--~t----------~e~~~~~I~~lr~~~pGi 233 (516)
++..+ .+.+ +..+-+..+...++ .|.+. |. .+.+.+.++.+.++ |+
T Consensus 137 Ga~iINDVsg~~d~~m~~vaa~~g--~~vVlmh~~G~~p~---tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~a--GI 209 (318)
T 2vp8_A 137 GADLINDTWGGVDPAMPEVAAEFG--AGLVCAHTGGALPR---TRPFRVSYGTTTRGVVDAVISQVTAAAERAVAA--GV 209 (318)
T ss_dssp TCCEEEETTSSSSTTHHHHHHHHT--CEEEEECC----------------CCSCHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEECCCCCchHHHHHHHHhC--CCEEEECCCCCCcc---ccccccccccccccHHHHHHHHHHHHHHHHHHc--CC
Confidence 01111 1112 33333333211011 12111 10 14556678888888 88
Q ss_pred E---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 010162 234 Q---IATDIICGFPGETDEDFNQTVNLIKEY 261 (516)
Q Consensus 234 ~---i~td~IvGfPGETeedf~etl~fi~el 261 (516)
. +-.|=-+|| +.|.++-.++++.+.++
T Consensus 210 ~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 210 AREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp CGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred ChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 4 888888898 55665555555555544
No 53
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.09 E-value=17 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.079 Sum_probs=19.6
Q ss_pred EEEeCCCCCCCCcCcccCccCCCcCCCCH
Q 010162 82 ILPINVGCLGACTYCKTKHARGHLGSYTV 110 (516)
Q Consensus 82 ~V~isrGC~~~CsFC~ip~~rG~~rsr~~ 110 (516)
+|+..+|||+ |.+|..+.+.|-.--.+|
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~i~dP 36 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLIVINP 36 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEEESCT
T ss_pred cccCCCCCCC-CCCCccCCEeeEEEEeCC
Confidence 4667789998 999987777776433333
No 54
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=23.03 E-value=4.8e+02 Score=24.74 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEee
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSS 132 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g 132 (516)
+..+++.+++.++.+.+.|..-|-+.+
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~ 46 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNV 46 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBC
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 456799999999999999998777655
No 55
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=22.14 E-value=3.6e+02 Score=25.94 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCCccccCCCCCHHHHHH
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 292 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~~sp~pGTpa~~~~~v~~~~~~e 292 (516)
..|.+++...++.+.+..+ +.+..|+=.|| |.+.++..+++..+.+.+..-+++=--...+|. .-+|.++..+
T Consensus 58 ~vt~~em~~~~~~I~~~~~-~pviaD~d~Gy-g~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k-----~l~~~~e~~~ 130 (275)
T 2ze3_A 58 TLTRDEMGREVEAIVRAVA-IPVNADIEAGY-GHAPEDVRRTVEHFAALGVAGVNLEDATGLTPT-----ELYDLDSQLR 130 (275)
T ss_dssp SSCHHHHHHHHHHHHHHCS-SCEEEECTTCS-SSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSS-----CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcC-CCEEeecCCCC-CCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCC-----ccCCHHHHHH
Confidence 3588999999999998755 68999999997 788999999999988999998887543221221 2467777777
Q ss_pred HHHHHHHHH
Q 010162 293 RSRELTSVF 301 (516)
Q Consensus 293 R~~~L~~l~ 301 (516)
|.+.+.+..
T Consensus 131 ~I~aa~~a~ 139 (275)
T 2ze3_A 131 RIEAARAAI 139 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 776666543
No 56
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=22.11 E-value=1.6e+02 Score=27.84 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEE------------cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 010162 215 TLSDFRTVVDTLIELVPGMQIATDIIC------------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 277 (516)
Q Consensus 215 t~e~~~~~I~~lr~~~pGi~i~td~Iv------------GfPGETeedf~etl~fi~el~~d~v~if~~sp~pGT 277 (516)
..+.+....+.+++.+|+..+..-|.- +-| .+.+.++-+.+-+.+++-+.++.+.+|+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 24 ARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 456788888889999898888877774 444 4556777788889999999999987775
No 57
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=21.88 E-value=1.6e+02 Score=29.31 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 010162 213 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 270 (516)
Q Consensus 213 ~~t~e~~~~~I~~lr~~~pGi~i~td~IvGfPGETeedf~etl~fi~el~~d~v~if~ 270 (516)
..+.+++...++.+.+..|++.+..|+=.|| | +.++..+++..+.+.+..-+++=-
T Consensus 82 ~vt~~em~~~~~~I~r~~~~~PviaD~d~Gy-g-~~~~v~~tv~~l~~aGaagv~iED 137 (318)
T 1zlp_A 82 LLTTTEVVEATRRITAAAPNLCVVVDGDTGG-G-GPLNVQRFIRELISAGAKGVFLED 137 (318)
T ss_dssp CSCHHHHHHHHHHHHHHSSSSEEEEECTTCS-S-SHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHhhccCCCEEEeCCCCC-C-CHHHHHHHHHHHHHcCCcEEEECC
Confidence 3589999999999999988899999999998 6 889999999998899998888754
No 58
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=21.38 E-value=5.8e+02 Score=24.96 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC------cCCCHHHHHHHHHHhCCCCCCceEEEeecCCc
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD------IGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 173 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d------~~~~l~eLL~~I~~~i~~~~~~~iri~~~~P~ 173 (516)
+..+++.+++.++.+++.|..-|-+.++.+. -|.. ....+..+++.|.+... ..+.+.+.+|.
T Consensus 28 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTr-PGa~~v~~~eE~~Rv~pvI~~l~~~~~----vpiSIDT~~~~ 96 (314)
T 2vef_A 28 QFFALEQALQQARKLIAEGASMLDIGGESTR-PGSSYVEIEEEIQRVVPVIKAIRKESD----VLISIDTWKSQ 96 (314)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHCC----CEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHHhhCC----ceEEEeCCCHH
Confidence 3457899999999999999998887775332 2221 11234556666654432 45666665543
No 59
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=21.01 E-value=1.3e+02 Score=30.04 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=40.6
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCC-----CCC---cCCCHHHHHHHHHHhCC
Q 010162 98 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD---IGVNLPILLNAIVAELP 158 (516)
Q Consensus 98 ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~y-----g~d---~~~~l~eLL~~I~~~i~ 158 (516)
++...|-+| .+++.+++|++.+.+.|++.|.|.|. +... |.. ...-+.+.++.|.+.++
T Consensus 54 I~SMPGv~r-~sid~l~~~~~~~~~lGi~~v~LFgv-~~~~~KD~~gs~A~~~~g~v~rair~iK~~~p 120 (337)
T 1w5q_A 54 IPSMPGVER-LSIDQLLIEAEEWVALGIPALALFPV-TPVEKKSLDAAEAYNPEGIAQRATRALRERFP 120 (337)
T ss_dssp CTTSTTCEE-EEHHHHHHHHHHHHHTTCCEEEEEEC-CCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred cCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEecC-CCcccCCcccCccCCCCChHHHHHHHHHHHCC
Confidence 455555554 48999999999999999999999985 1211 111 01125677888887776
No 60
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=20.95 E-value=4.3e+02 Score=25.73 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcC------CCHHHHHHHHHHhCCCCCCceEEEeecCCcchHHHH
Q 010162 106 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 179 (516)
Q Consensus 106 rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~------~~l~eLL~~I~~~i~~~~~~~iri~~~~P~~i~~~l 179 (516)
+..+++.+++.++.+.+.|..-|-+.++.+. -|.... ..+..+++.+.+. ...+.+.+.+|..+..-+
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTr-Pga~~v~~~eE~~Rv~pvi~~l~~~-----~vpiSIDT~~~~Va~aAl 114 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTR-PGAPPVPLDEELARVIPLVEALRPL-----NVPLSIDTYKPAVMRAAL 114 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHGGG-----CSCEEEECCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHhhC-----CCeEEEECCCHHHHHHHH
Confidence 3457899999999999999998887775332 222111 1233444444321 245677766654332222
Q ss_pred H---------------HHHHHHcCCCCccEEEecccCCCHHHHHhcC-C--CCC------HHHHHHHHHHHHHhCCCCE-
Q 010162 180 K---------------EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-R--EYT------LSDFRTVVDTLIELVPGMQ- 234 (516)
Q Consensus 180 ~---------------eL~~l~~~~~~~~~i~iGlQSgsd~vLk~Mn-R--~~t------~e~~~~~I~~lr~~~pGi~- 234 (516)
. ++..+.. ...++.+-+..+. .++ .|. . .|. .+.+.+.++.+.++ |+.
T Consensus 115 ~aGa~iINdVsg~~d~~m~~~~a-~~~~~vVlmh~~G-~p~---tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~~ 187 (294)
T 2y5s_A 115 AAGADLINDIWGFRQPGAIDAVR-DGNSGLCAMHMLG-EPQ---TMQVGEPDYGDVVTDVRDFLAARAQALRDA--GVAA 187 (294)
T ss_dssp HHTCSEEEETTTTCSTTHHHHHS-SSSCEEEEECCCE-ETT---TTEECCCCCSSHHHHHHHHHHHHHHHHHHT--TCCG
T ss_pred HcCCCEEEECCCCCchHHHHHHH-HhCCCEEEECCCC-CCc---cccccCCccccHHHHHHHHHHHHHHHHHHc--CCCh
Confidence 1 0111111 1123344433321 111 110 0 121 45677788888888 885
Q ss_pred --EEEEEEEcCCCCCH-HHHHHHHHHHHhcC
Q 010162 235 --IATDIICGFPGETD-EDFNQTVNLIKEYK 262 (516)
Q Consensus 235 --i~td~IvGfPGETe-edf~etl~fi~el~ 262 (516)
+-.|=-+|| +.|. ++-.++++-+.+++
T Consensus 188 ~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 188 ERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp GGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred hhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 889988888 6666 55555666665554
No 61
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=20.87 E-value=5.5e+02 Score=24.43 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCCCCCcCcccCccCCCcCCCCHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 010162 79 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 158 (516)
Q Consensus 79 ~~a~V~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~EI~~L~~~GvkeI~l~g~n~~~yg~d~~~~l~eLL~~I~~~i~ 158 (516)
..++|...-||+.. -..+++.+++-++.+.+.|+..|.+.+ +. |.-.+....++++.+.+.++
T Consensus 136 V~~~l~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~G~d~i~l~D--t~--G~~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 136 IRGYVSCVVECPYD-------------GPVTPQAVASVTEQLFSLGCHEVSLGD--TI--GRGTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp EEEEEECSSEETTT-------------EECCHHHHHHHHHHHHHHTCSEEEEEE--TT--SCCCHHHHHHHHHHHHTTSC
T ss_pred EEEEEEEEecCCcC-------------CCCCHHHHHHHHHHHHhcCCCEEEecC--CC--CCcCHHHHHHHHHHHHHhCC
Confidence 34556665666652 124789999999999999999999986 22 22222346778888876553
No 62
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=20.01 E-value=5.2e+02 Score=23.83 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=45.8
Q ss_pred ccEEEecccCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE----------------EcCCC-C----CHHH
Q 010162 192 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII----------------CGFPG-E----TDED 250 (516)
Q Consensus 192 ~~~i~iGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pGi~i~td~I----------------vGfPG-E----Teed 250 (516)
+..|.+...... ..+.++..++.+.+++. |+.+.+... +|++. + ..+.
T Consensus 35 ~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~ 103 (290)
T 3tva_A 35 VPTVQVHAPHPH---------TRTREHAQAFRAKCDAA--GIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAE 103 (290)
T ss_dssp CSEEEEECCCGG---------GCSHHHHHHHHHHHHHT--TCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHH
T ss_pred CCEEEecCCCCC---------cCCHHHHHHHHHHHHHc--CCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHH
Confidence 788888864321 24567788888888898 988765421 12211 1 2367
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 010162 251 FNQTVNLIKEYKFPQVHIS 269 (516)
Q Consensus 251 f~etl~fi~el~~d~v~if 269 (516)
+++.++++.+++...+.++
T Consensus 104 ~~~~i~~a~~lG~~~v~~~ 122 (290)
T 3tva_A 104 MKEISDFASWVGCPAIGLH 122 (290)
T ss_dssp HHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 8889999999999988775
Done!