Query 010166
Match_columns 516
No_of_seqs 288 out of 1018
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 21:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 5.4E-47 1.2E-51 383.3 11.1 197 35-231 10-209 (304)
2 smart00415 HSF heat shock fact 100.0 6.5E-34 1.4E-38 248.5 6.5 94 36-129 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 4.3E-34 9.4E-39 247.8 5.3 93 39-131 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 8.3E-32 1.8E-36 271.0 7.5 99 35-133 8-116 (282)
5 PF00178 Ets: Ets-domain; Int 94.5 0.018 4E-07 49.5 1.5 59 40-99 4-65 (85)
6 PF03310 Cauli_DNA-bind: Cauli 94.4 0.17 3.7E-06 46.3 7.7 56 173-231 2-57 (121)
7 smart00413 ETS erythroblast tr 91.6 0.21 4.5E-06 43.4 3.6 57 42-98 6-64 (87)
8 KOG3806 Predicted transcriptio 86.8 1.5 3.2E-05 42.8 5.9 65 34-98 65-131 (177)
9 PF12325 TMF_TATA_bd: TATA ele 85.9 3.7 8E-05 37.6 7.7 58 157-214 31-91 (120)
10 PF06005 DUF904: Protein of un 85.8 3.5 7.6E-05 34.6 6.9 40 161-200 23-69 (72)
11 PF11932 DUF3450: Protein of u 85.3 7.4 0.00016 39.1 10.4 67 160-229 53-119 (251)
12 COG3074 Uncharacterized protei 84.7 6.3 0.00014 33.3 7.7 39 161-199 23-61 (79)
13 TIGR02449 conserved hypothetic 84.6 3.7 8.1E-05 34.0 6.4 24 181-204 39-62 (65)
14 TIGR02894 DNA_bind_RsfA transc 84.4 6.6 0.00014 37.8 8.9 54 165-218 99-152 (161)
15 TIGR03752 conj_TIGR03752 integ 82.2 9 0.00019 42.5 10.0 57 160-216 70-127 (472)
16 PF10168 Nup88: Nuclear pore c 81.4 5.6 0.00012 46.3 8.6 61 159-219 561-621 (717)
17 PF02183 HALZ: Homeobox associ 78.2 9.1 0.0002 29.4 6.1 41 161-201 3-43 (45)
18 PRK15422 septal ring assembly 78.0 16 0.00035 31.4 8.1 47 161-207 23-69 (79)
19 KOG4460 Nuclear pore complex, 77.9 9.3 0.0002 43.2 8.5 63 159-221 584-646 (741)
20 PF04340 DUF484: Protein of un 76.8 7.3 0.00016 38.4 6.8 75 111-221 17-91 (225)
21 PF10473 CENP-F_leu_zip: Leuci 76.4 20 0.00043 33.8 9.1 60 160-219 56-115 (140)
22 TIGR02449 conserved hypothetic 72.3 45 0.00098 27.7 9.1 55 161-215 5-59 (65)
23 PF11932 DUF3450: Protein of u 71.4 42 0.0009 33.7 10.7 68 161-231 47-114 (251)
24 PF06005 DUF904: Protein of un 71.1 55 0.0012 27.5 9.6 53 161-213 9-61 (72)
25 KOG4005 Transcription factor X 66.2 28 0.00061 35.7 8.1 53 160-212 94-151 (292)
26 PF08581 Tup_N: Tup N-terminal 65.2 53 0.0011 28.1 8.4 36 162-197 3-38 (79)
27 PF04111 APG6: Autophagy prote 63.4 37 0.0008 35.7 8.8 47 160-206 47-93 (314)
28 PF07407 Seadorna_VP6: Seadorn 60.8 32 0.0007 36.8 7.7 50 158-212 34-83 (420)
29 PF10779 XhlA: Haemolysin XhlA 59.4 99 0.0021 25.4 9.2 56 161-216 4-59 (71)
30 PRK10963 hypothetical protein; 58.0 39 0.00085 33.6 7.5 73 111-219 14-86 (223)
31 PRK15422 septal ring assembly 57.5 34 0.00074 29.5 5.9 34 162-195 10-43 (79)
32 PF04156 IncA: IncA protein; 56.6 81 0.0018 29.9 9.2 59 160-218 92-150 (191)
33 TIGR02894 DNA_bind_RsfA transc 56.4 46 0.001 32.2 7.3 42 160-201 108-149 (161)
34 PF01519 DUF16: Protein of unk 56.2 44 0.00094 30.1 6.6 47 164-210 54-100 (102)
35 PF02183 HALZ: Homeobox associ 55.4 31 0.00068 26.4 4.9 33 161-193 10-42 (45)
36 PF12329 TMF_DNA_bd: TATA elem 55.1 92 0.002 26.1 8.1 47 163-209 19-65 (74)
37 PF04201 TPD52: Tumour protein 54.2 38 0.00083 32.8 6.4 40 161-200 27-66 (162)
38 PRK10803 tol-pal system protei 54.1 89 0.0019 31.9 9.5 39 176-214 60-98 (263)
39 KOG4196 bZIP transcription fac 54.0 41 0.0009 31.5 6.3 42 166-214 77-118 (135)
40 PF01519 DUF16: Protein of unk 52.4 1.1E+02 0.0023 27.7 8.4 43 162-204 59-101 (102)
41 KOG4360 Uncharacterized coiled 51.5 47 0.001 37.5 7.4 54 161-214 224-277 (596)
42 PRK06800 fliH flagellar assemb 51.0 1.2E+02 0.0026 30.4 9.2 36 161-196 36-71 (228)
43 KOG0977 Nuclear envelope prote 50.4 96 0.0021 35.4 9.7 59 160-218 166-232 (546)
44 PF04880 NUDE_C: NUDE protein, 50.4 9.3 0.0002 37.0 1.7 36 161-201 19-54 (166)
45 COG4942 Membrane-bound metallo 50.1 88 0.0019 34.5 9.1 47 160-206 63-109 (420)
46 PF11414 Suppressor_APC: Adeno 49.5 66 0.0014 27.9 6.5 44 159-202 3-46 (84)
47 PRK14127 cell division protein 49.5 75 0.0016 28.8 7.2 40 165-204 32-71 (109)
48 PF00170 bZIP_1: bZIP transcri 49.3 54 0.0012 26.1 5.7 27 161-187 31-57 (64)
49 PRK10803 tol-pal system protei 49.2 58 0.0013 33.3 7.3 36 167-202 58-93 (263)
50 PRK00295 hypothetical protein; 47.9 96 0.0021 25.6 7.0 11 190-200 39-49 (68)
51 COG1579 Zn-ribbon protein, pos 47.3 66 0.0014 32.9 7.2 48 159-206 92-139 (239)
52 COG3074 Uncharacterized protei 46.7 1.4E+02 0.003 25.5 7.7 44 161-204 9-52 (79)
53 PF07407 Seadorna_VP6: Seadorn 46.5 88 0.0019 33.7 8.1 49 155-203 38-88 (420)
54 smart00338 BRLZ basic region l 45.5 57 0.0012 26.0 5.3 28 161-188 31-58 (65)
55 PF14282 FlxA: FlxA-like prote 44.3 1.2E+02 0.0026 27.0 7.6 24 161-184 17-40 (106)
56 TIGR00219 mreC rod shape-deter 44.3 65 0.0014 33.4 6.8 22 164-185 67-88 (283)
57 PRK00846 hypothetical protein; 44.2 1E+02 0.0022 26.4 6.8 12 207-218 39-50 (77)
58 TIGR02132 phaR_Bmeg polyhydrox 44.1 1.4E+02 0.003 29.6 8.5 57 160-216 83-139 (189)
59 PF04102 SlyX: SlyX; InterPro 44.1 80 0.0017 25.9 6.0 33 170-202 18-50 (69)
60 PF07106 TBPIP: Tat binding pr 43.6 95 0.0021 29.3 7.3 21 163-183 79-99 (169)
61 PRK00888 ftsB cell division pr 43.6 75 0.0016 28.3 6.2 34 164-197 28-61 (105)
62 PRK10884 SH3 domain-containing 43.4 71 0.0015 31.8 6.7 26 98-123 65-92 (206)
63 PRK11637 AmiB activator; Provi 42.8 1.4E+02 0.0031 32.2 9.5 40 164-203 83-122 (428)
64 KOG2751 Beclin-like protein [S 42.7 2.4E+02 0.0053 31.4 11.0 72 160-231 180-255 (447)
65 PRK11637 AmiB activator; Provi 42.0 1.4E+02 0.003 32.4 9.2 42 163-204 75-116 (428)
66 KOG4196 bZIP transcription fac 41.6 1.7E+02 0.0038 27.5 8.3 30 177-206 47-76 (135)
67 PF04420 CHD5: CHD5-like prote 41.5 1.2E+02 0.0026 28.8 7.6 57 162-218 39-107 (161)
68 PRK04406 hypothetical protein; 41.4 1.1E+02 0.0024 25.8 6.6 12 207-218 37-48 (75)
69 PF11853 DUF3373: Protein of u 41.3 24 0.00052 39.5 3.3 37 161-205 23-59 (489)
70 PF00038 Filament: Intermediat 41.3 1.9E+02 0.004 29.6 9.6 52 161-212 214-265 (312)
71 PF12325 TMF_TATA_bd: TATA ele 41.1 2.4E+02 0.0052 25.9 9.2 46 161-206 21-66 (120)
72 PRK09039 hypothetical protein; 40.8 1.5E+02 0.0032 31.6 9.0 44 161-204 121-164 (343)
73 COG1579 Zn-ribbon protein, pos 40.8 1.1E+02 0.0023 31.5 7.5 47 161-207 36-82 (239)
74 KOG4010 Coiled-coil protein TP 40.7 80 0.0017 31.5 6.4 39 162-200 43-81 (208)
75 PF09726 Macoilin: Transmembra 40.1 1.1E+02 0.0023 36.0 8.4 26 160-185 422-447 (697)
76 PF08317 Spc7: Spc7 kinetochor 40.1 1.7E+02 0.0036 30.8 9.2 17 168-184 182-198 (325)
77 KOG3863 bZIP transcription fac 39.7 57 0.0012 37.5 5.9 71 112-203 478-551 (604)
78 PF11559 ADIP: Afadin- and alp 39.6 2.4E+02 0.0052 26.0 9.2 46 161-206 57-102 (151)
79 PRK13729 conjugal transfer pil 39.5 94 0.002 34.9 7.4 40 165-204 78-117 (475)
80 PF07200 Mod_r: Modifier of ru 39.0 2.9E+02 0.0062 25.3 9.6 47 164-210 42-88 (150)
81 PF12709 Kinetocho_Slk19: Cent 38.9 1.1E+02 0.0023 26.9 6.2 33 161-193 47-79 (87)
82 smart00787 Spc7 Spc7 kinetocho 38.8 1.9E+02 0.0042 30.5 9.4 22 167-188 176-197 (312)
83 PRK13182 racA polar chromosome 38.7 1.7E+02 0.0038 28.4 8.4 21 112-132 35-55 (175)
84 PF03904 DUF334: Domain of unk 38.4 1.9E+02 0.0041 29.6 8.7 41 162-202 42-82 (230)
85 PF04849 HAP1_N: HAP1 N-termin 38.3 2.3E+02 0.005 30.2 9.7 72 161-232 165-258 (306)
86 PF10224 DUF2205: Predicted co 38.3 2.6E+02 0.0057 24.1 9.2 42 163-211 8-50 (80)
87 COG3883 Uncharacterized protei 38.2 1.9E+02 0.0042 30.1 9.0 62 160-221 49-113 (265)
88 PF06156 DUF972: Protein of un 38.0 1.3E+02 0.0029 27.0 6.9 16 188-203 40-55 (107)
89 PF14817 HAUS5: HAUS augmin-li 37.3 2.7E+02 0.0059 32.4 10.9 48 160-207 83-130 (632)
90 PF07200 Mod_r: Modifier of ru 37.1 1.9E+02 0.0041 26.6 8.1 48 165-212 36-83 (150)
91 PRK09039 hypothetical protein; 37.0 1.9E+02 0.0041 30.8 9.1 58 161-218 128-185 (343)
92 PF04728 LPP: Lipoprotein leuc 36.1 2.4E+02 0.0051 22.9 7.4 42 165-206 5-46 (56)
93 PF12718 Tropomyosin_1: Tropom 36.0 3.6E+02 0.0079 25.2 9.8 44 161-204 19-62 (143)
94 PRK02119 hypothetical protein; 35.9 1.6E+02 0.0034 24.7 6.7 12 207-218 35-46 (73)
95 PF11559 ADIP: Afadin- and alp 35.7 3.1E+02 0.0067 25.3 9.3 10 94-103 10-19 (151)
96 PF04156 IncA: IncA protein; 34.9 3E+02 0.0065 26.1 9.4 44 161-204 107-150 (191)
97 COG5481 Uncharacterized conser 34.9 2.3E+02 0.0051 23.4 7.1 24 175-198 9-32 (67)
98 PRK15396 murein lipoprotein; P 34.8 2.8E+02 0.0061 23.8 8.0 48 164-211 26-73 (78)
99 PF10226 DUF2216: Uncharacteri 34.7 2E+02 0.0044 28.7 8.1 19 164-182 56-74 (195)
100 PF08826 DMPK_coil: DMPK coile 34.2 1.8E+02 0.004 23.8 6.5 36 171-206 12-47 (61)
101 COG1382 GimC Prefoldin, chaper 34.1 1.6E+02 0.0035 27.2 6.9 41 162-202 69-109 (119)
102 PF07888 CALCOCO1: Calcium bin 34.0 4E+02 0.0086 30.6 11.3 22 164-185 144-165 (546)
103 PF10805 DUF2730: Protein of u 33.9 2.3E+02 0.005 25.2 7.8 42 169-210 48-91 (106)
104 COG3159 Uncharacterized protei 33.7 78 0.0017 32.0 5.2 76 108-219 12-87 (218)
105 KOG2856 Adaptor protein PACSIN 33.6 7E+02 0.015 27.6 15.7 45 162-206 176-221 (472)
106 PF13942 Lipoprotein_20: YfhG 33.6 1.9E+02 0.0041 28.5 7.6 25 177-201 130-154 (179)
107 PF07888 CALCOCO1: Calcium bin 33.1 1.8E+02 0.004 33.2 8.5 8 74-81 77-84 (546)
108 KOG2196 Nuclear porin [Nuclear 32.4 3.4E+02 0.0073 28.2 9.5 43 160-202 117-159 (254)
109 PF08781 DP: Transcription fac 32.3 2E+02 0.0043 27.4 7.4 17 164-180 2-18 (142)
110 PF05377 FlaC_arch: Flagella a 32.0 1.7E+02 0.0037 23.7 5.9 11 203-213 33-43 (55)
111 PRK14160 heat shock protein Gr 31.8 3.5E+02 0.0075 27.3 9.4 42 161-202 59-100 (211)
112 PRK14143 heat shock protein Gr 31.6 3.3E+02 0.0072 27.9 9.4 42 161-202 65-106 (238)
113 PF07716 bZIP_2: Basic region 31.6 86 0.0019 24.3 4.2 22 161-182 30-51 (54)
114 PF05377 FlaC_arch: Flagella a 30.7 2E+02 0.0043 23.3 6.1 36 161-196 5-40 (55)
115 PF14817 HAUS5: HAUS augmin-li 30.7 3.1E+02 0.0068 31.9 10.1 50 171-220 80-129 (632)
116 PF07106 TBPIP: Tat binding pr 30.5 2.4E+02 0.0052 26.5 7.8 33 164-196 73-105 (169)
117 PRK13169 DNA replication intia 30.5 2.1E+02 0.0045 26.1 6.9 12 190-201 42-53 (110)
118 PF04102 SlyX: SlyX; InterPro 30.3 2.9E+02 0.0062 22.7 7.2 12 207-218 30-41 (69)
119 PRK13923 putative spore coat p 30.0 3.8E+02 0.0083 26.2 9.1 38 177-214 111-148 (170)
120 PF05130 FlgN: FlgN protein; 29.8 3.2E+02 0.007 23.7 8.1 26 163-188 37-62 (143)
121 PF04977 DivIC: Septum formati 29.8 1.5E+02 0.0033 23.7 5.6 9 220-228 53-61 (80)
122 PRK14127 cell division protein 29.7 1.5E+02 0.0032 26.9 5.9 28 164-191 38-65 (109)
123 PF02403 Seryl_tRNA_N: Seryl-t 29.7 3.1E+02 0.0068 23.7 7.8 49 160-208 40-91 (108)
124 COG5613 Uncharacterized conser 29.6 3.4E+02 0.0074 29.7 9.3 51 169-219 329-379 (400)
125 PF13874 Nup54: Nucleoporin co 29.5 3.2E+02 0.007 25.3 8.3 37 164-200 45-81 (141)
126 PF03961 DUF342: Protein of un 29.3 2.7E+02 0.0058 30.5 8.9 25 161-185 332-356 (451)
127 TIGR03752 conj_TIGR03752 integ 29.0 3.3E+02 0.0072 30.7 9.5 41 161-201 64-104 (472)
128 PF10211 Ax_dynein_light: Axon 28.9 2.6E+02 0.0057 27.3 7.9 24 161-184 125-148 (189)
129 PF08614 ATG16: Autophagy prot 28.9 4.6E+02 0.0099 25.4 9.6 17 165-181 118-134 (194)
130 PHA02562 46 endonuclease subun 28.7 3E+02 0.0064 30.4 9.3 14 211-224 405-418 (562)
131 PRK13923 putative spore coat p 28.7 2.2E+02 0.0048 27.9 7.2 42 161-202 109-150 (170)
132 PRK13922 rod shape-determining 28.3 1.6E+02 0.0035 29.8 6.6 21 165-185 71-91 (276)
133 TIGR00414 serS seryl-tRNA synt 28.1 2.7E+02 0.0059 30.4 8.7 57 158-214 39-99 (418)
134 PF00170 bZIP_1: bZIP transcri 28.0 3E+02 0.0066 21.8 6.9 19 165-183 28-46 (64)
135 PF10018 Med4: Vitamin-D-recep 28.0 3.1E+02 0.0067 26.6 8.2 52 173-228 12-63 (188)
136 PF02994 Transposase_22: L1 tr 27.7 1.2E+02 0.0026 32.7 5.8 53 161-213 110-166 (370)
137 PRK10722 hypothetical protein; 27.7 2.1E+02 0.0045 29.6 7.1 28 176-203 175-202 (247)
138 PF06160 EzrA: Septation ring 27.6 2.7E+02 0.006 31.5 8.9 26 159-184 309-334 (560)
139 PF11285 DUF3086: Protein of u 27.6 3.4E+02 0.0074 28.5 8.6 59 163-231 4-70 (283)
140 PF10146 zf-C4H2: Zinc finger- 27.3 3.8E+02 0.0082 27.3 8.9 56 163-218 32-87 (230)
141 PF12958 DUF3847: Protein of u 27.3 4.2E+02 0.0092 23.2 9.1 23 181-203 12-34 (86)
142 PF09726 Macoilin: Transmembra 27.1 2.6E+02 0.0057 32.9 8.7 58 161-218 416-480 (697)
143 PF04849 HAP1_N: HAP1 N-termin 26.9 4.6E+02 0.0099 28.0 9.7 61 168-228 232-292 (306)
144 KOG3850 Predicted membrane pro 26.8 5.9E+02 0.013 28.2 10.6 14 38-51 130-143 (455)
145 PRK14148 heat shock protein Gr 26.7 4.7E+02 0.01 26.0 9.3 43 160-202 37-79 (195)
146 PF13851 GAS: Growth-arrest sp 26.5 6.3E+02 0.014 24.9 10.6 14 217-230 137-150 (201)
147 PF10018 Med4: Vitamin-D-recep 26.4 5.9E+02 0.013 24.6 9.9 50 161-211 14-63 (188)
148 PF12269 zf-CpG_bind_C: CpG bi 26.4 1.4E+02 0.0031 30.6 5.7 32 188-219 33-64 (236)
149 PF04728 LPP: Lipoprotein leuc 26.3 3.6E+02 0.0077 21.9 8.6 44 161-204 8-51 (56)
150 PF13747 DUF4164: Domain of un 26.1 4.1E+02 0.0088 23.1 7.8 52 161-212 37-88 (89)
151 smart00338 BRLZ basic region l 26.0 2.7E+02 0.0059 22.1 6.3 34 164-197 27-60 (65)
152 PRK03947 prefoldin subunit alp 25.9 3E+02 0.0066 25.0 7.4 47 160-206 91-137 (140)
153 PF04888 SseC: Secretion syste 25.6 4.9E+02 0.011 26.7 9.7 65 162-226 236-300 (306)
154 PF09727 CortBP2: Cortactin-bi 25.5 3.6E+02 0.0079 26.9 8.2 49 168-216 139-187 (192)
155 PF12718 Tropomyosin_1: Tropom 25.4 5.6E+02 0.012 23.9 10.0 35 161-195 33-67 (143)
156 COG1730 GIM5 Predicted prefold 25.4 2.2E+02 0.0048 27.0 6.5 42 161-202 92-133 (145)
157 PF13094 CENP-Q: CENP-Q, a CEN 25.3 4E+02 0.0086 24.9 8.2 40 179-218 43-82 (160)
158 KOG0977 Nuclear envelope prote 25.2 3.2E+02 0.0069 31.4 8.7 43 160-202 152-194 (546)
159 PF06156 DUF972: Protein of un 25.2 1.9E+02 0.0042 26.0 5.8 20 163-182 8-27 (107)
160 PRK04778 septation ring format 25.1 3.4E+02 0.0073 30.8 9.0 46 157-202 311-366 (569)
161 PF07676 PD40: WD40-like Beta 25.0 49 0.0011 23.2 1.6 23 47-69 4-26 (39)
162 COG1345 FliD Flagellar capping 25.0 3E+02 0.0065 31.0 8.4 53 159-214 425-477 (483)
163 PF04012 PspA_IM30: PspA/IM30 24.8 5E+02 0.011 25.3 9.1 36 174-209 102-137 (221)
164 PF05325 DUF730: Protein of un 24.8 2.7E+02 0.0059 25.1 6.5 53 160-212 68-120 (122)
165 PF06216 RTBV_P46: Rice tungro 24.3 2E+02 0.0043 30.1 6.3 42 161-202 69-110 (389)
166 KOG4057 Uncharacterized conser 24.2 5.1E+02 0.011 25.2 8.5 61 161-221 17-78 (180)
167 PF08317 Spc7: Spc7 kinetochor 24.2 4.6E+02 0.0099 27.6 9.2 49 163-211 209-257 (325)
168 KOG0930 Guanine nucleotide exc 24.1 2.2E+02 0.0048 30.3 6.7 35 163-197 17-51 (395)
169 PF14645 Chibby: Chibby family 23.9 3.4E+02 0.0073 24.8 7.2 27 163-189 71-97 (116)
170 PF08651 DASH_Duo1: DASH compl 23.8 4.5E+02 0.0097 22.4 7.4 56 175-230 3-64 (78)
171 PF08227 DASH_Hsk3: DASH compl 23.7 3.5E+02 0.0077 21.0 6.2 40 171-218 3-42 (45)
172 PF05837 CENP-H: Centromere pr 23.7 5.2E+02 0.011 22.9 8.3 29 162-190 23-51 (106)
173 KOG1853 LIS1-interacting prote 23.6 6E+02 0.013 26.8 9.5 35 161-195 57-91 (333)
174 PF12308 Noelin-1: Neurogenesi 23.5 2.6E+02 0.0057 25.2 6.1 51 161-211 45-95 (101)
175 cd00632 Prefoldin_beta Prefold 23.5 3.6E+02 0.0077 23.5 7.1 43 161-203 61-103 (105)
176 PF05064 Nsp1_C: Nsp1-like C-t 23.3 40 0.00086 30.4 1.1 20 172-191 59-78 (116)
177 PLN03223 Polycystin cation cha 23.3 2.4E+02 0.0053 35.8 7.7 54 165-218 1573-1626(1634)
178 cd07619 BAR_Rich2 The Bin/Amph 23.1 5.9E+02 0.013 26.3 9.5 25 208-232 187-211 (248)
179 PF02388 FemAB: FemAB family; 23.0 3.3E+02 0.0071 29.5 8.1 56 160-215 239-297 (406)
180 PF11382 DUF3186: Protein of u 22.9 2E+02 0.0043 30.2 6.2 28 161-188 37-64 (308)
181 PF10779 XhlA: Haemolysin XhlA 22.6 4.3E+02 0.0094 21.6 8.1 55 174-228 3-57 (71)
182 PRK14158 heat shock protein Gr 22.5 6.6E+02 0.014 25.0 9.4 42 161-202 38-79 (194)
183 KOG1760 Molecular chaperone Pr 22.4 3.6E+02 0.0077 25.4 6.9 42 161-202 79-120 (131)
184 COG4026 Uncharacterized protei 22.3 4.9E+02 0.011 26.9 8.5 57 161-217 140-196 (290)
185 PRK05431 seryl-tRNA synthetase 22.0 3.5E+02 0.0076 29.6 8.2 56 159-214 38-96 (425)
186 COG3206 GumC Uncharacterized p 21.9 3.5E+02 0.0076 29.5 8.1 60 173-232 338-397 (458)
187 PF09787 Golgin_A5: Golgin sub 21.8 3.2E+02 0.007 30.6 8.0 39 164-202 275-313 (511)
188 PF04111 APG6: Autophagy prote 21.7 4.6E+02 0.01 27.6 8.7 20 163-182 64-83 (314)
189 PRK03947 prefoldin subunit alp 21.6 2.7E+02 0.0059 25.3 6.2 41 160-200 98-138 (140)
190 KOG3915 Transcription regulato 21.5 3.2E+02 0.007 30.9 7.6 18 163-180 499-516 (641)
191 PF10376 Mei5: Double-strand r 21.4 5.4E+02 0.012 26.1 8.7 60 160-219 135-195 (221)
192 PF15070 GOLGA2L5: Putative go 21.3 8E+02 0.017 28.6 11.1 48 160-207 84-138 (617)
193 PF05524 PEP-utilisers_N: PEP- 21.3 2.3E+02 0.0051 25.0 5.6 55 178-232 36-91 (123)
194 PRK06798 fliD flagellar cappin 21.1 3.7E+02 0.008 29.7 8.1 26 181-206 383-408 (440)
195 PRK09841 cryptic autophosphory 21.1 5E+02 0.011 30.3 9.6 14 461-474 641-657 (726)
196 COG2433 Uncharacterized conser 21.0 3.4E+02 0.0073 31.7 7.8 43 160-202 426-468 (652)
197 PF10805 DUF2730: Protein of u 21.0 4.8E+02 0.01 23.1 7.4 14 190-203 78-91 (106)
198 PF04012 PspA_IM30: PspA/IM30 21.0 4.3E+02 0.0093 25.8 7.8 43 161-203 96-138 (221)
199 PF10458 Val_tRNA-synt_C: Valy 21.0 4.5E+02 0.0097 21.2 8.3 22 162-183 3-24 (66)
200 PRK06342 transcription elongat 20.9 2.6E+02 0.0057 26.8 6.1 19 165-183 36-54 (160)
201 PRK05892 nucleoside diphosphat 20.9 3.1E+02 0.0068 26.1 6.6 20 160-179 15-34 (158)
202 COG1730 GIM5 Predicted prefold 20.9 5.3E+02 0.011 24.6 8.0 43 160-202 98-140 (145)
203 COG2433 Uncharacterized conser 20.8 5.4E+02 0.012 30.1 9.3 19 33-51 296-314 (652)
204 PTZ00454 26S protease regulato 20.7 2.7E+02 0.0058 30.3 6.8 35 160-194 19-53 (398)
205 PF08172 CASP_C: CASP C termin 20.7 2.1E+02 0.0045 29.3 5.7 36 161-196 98-133 (248)
206 PF08946 Osmo_CC: Osmosensory 20.6 1.8E+02 0.0039 22.8 3.9 31 182-212 10-40 (46)
207 PF12329 TMF_DNA_bd: TATA elem 20.6 5.1E+02 0.011 21.7 9.2 54 165-218 7-60 (74)
208 COG1422 Predicted membrane pro 20.6 3.6E+02 0.0078 27.1 7.1 23 162-184 71-93 (201)
209 PRK13729 conjugal transfer pil 20.6 4.9E+02 0.011 29.5 8.8 43 170-212 76-118 (475)
210 PF10393 Matrilin_ccoil: Trime 20.5 3.4E+02 0.0074 21.2 5.5 18 190-207 29-46 (47)
211 PF13874 Nup54: Nucleoporin co 20.4 4.7E+02 0.01 24.2 7.6 18 196-213 70-87 (141)
212 PF05266 DUF724: Protein of un 20.4 5.1E+02 0.011 25.5 8.1 8 95-102 81-88 (190)
213 PRK14163 heat shock protein Gr 20.2 6.2E+02 0.014 25.6 8.8 41 162-202 39-79 (214)
214 PRK07737 fliD flagellar cappin 20.2 3.7E+02 0.008 30.2 8.0 26 182-207 446-471 (501)
215 TIGR01843 type_I_hlyD type I s 20.1 5.2E+02 0.011 27.0 8.8 38 167-204 141-178 (423)
216 TIGR02977 phageshock_pspA phag 20.1 7.1E+02 0.015 24.6 9.2 41 172-212 101-141 (219)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=5.4e-47 Score=383.26 Aligned_cols=197 Identities=52% Similarity=0.862 Sum_probs=176.2
Q ss_pred CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC--CCcceEec
Q 010166 35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD--PDRWEFAN 112 (516)
Q Consensus 35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~--~d~weF~h 112 (516)
..+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+ +++|||+|
T Consensus 10 ~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n 89 (304)
T KOG0627|consen 10 SGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSN 89 (304)
T ss_pred CCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCcccCcccccccceeccCCCCCCCC-CccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 113 EGFLRGQKHLLRSISRRKPAHGHGHQ-QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDS 191 (516)
Q Consensus 113 ~~F~RG~~~LL~~IkRrk~~~~~~~~-q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~ 191 (516)
++|+||+++||++|+|||+.++.... ..............+++..+..++.++.+|+++++.|++|+++||++++.+++
T Consensus 90 ~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~ 169 (304)
T KOG0627|consen 90 PCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRA 169 (304)
T ss_pred hhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999998766421 01111111112234556677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 192 QLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 192 qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
+++.+.+++..++.+|++|+.|++++++.|.|+.++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 170 TIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 9999999999999999999999999999999999998754
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=6.5e-34 Score=248.51 Aligned_cols=94 Identities=69% Similarity=1.308 Sum_probs=90.6
Q ss_pred CCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeCC----------
Q 010166 36 APPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDP---------- 105 (516)
Q Consensus 36 ~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~~---------- 105 (516)
.+|.|+.|||+||+|+++++||+|+++|++|+|+|+.+|.+.|||+||||+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CcceEecCCcccCcccccccceec
Q 010166 106 -DRWEFANEGFLRGQKHLLRSISRR 129 (516)
Q Consensus 106 -d~weF~h~~F~RG~~~LL~~IkRr 129 (516)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 689999999999999999999986
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=4.3e-34 Score=247.82 Aligned_cols=93 Identities=56% Similarity=1.053 Sum_probs=81.6
Q ss_pred chHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeCCC---------cce
Q 010166 39 PFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPD---------RWE 109 (516)
Q Consensus 39 ~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~~d---------~we 109 (516)
.||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+..+ .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 49999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred EecCCcccCcccccccceeccC
Q 010166 110 FANEGFLRGQKHLLRSISRRKP 131 (516)
Q Consensus 110 F~h~~F~RG~~~LL~~IkRrk~ 131 (516)
|+|++|+||++++|..|+||++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=8.3e-32 Score=271.03 Aligned_cols=99 Identities=44% Similarity=0.905 Sum_probs=92.2
Q ss_pred CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC-C--------
Q 010166 35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD-P-------- 105 (516)
Q Consensus 35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~-~-------- 105 (516)
..++.|+.|||.||++|++.++|+|+++|+||||+|+.+|.+.|||+||||+||+|||||||+||||||. .
T Consensus 8 ~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n 87 (282)
T COG5169 8 SQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYN 87 (282)
T ss_pred CchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccc
Confidence 4467899999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred -CcceEecCCcccCcccccccceeccCCC
Q 010166 106 -DRWEFANEGFLRGQKHLLRSISRRKPAH 133 (516)
Q Consensus 106 -d~weF~h~~F~RG~~~LL~~IkRrk~~~ 133 (516)
+.|||.|++|++|..++|++|+|+|...
T Consensus 88 ~~~wef~~~nF~~g~~~~L~~i~r~ka~~ 116 (282)
T COG5169 88 ENVWEFGNKNFQLGMIELLKKIKRKKAPS 116 (282)
T ss_pred hhheeecCchhccCcHHHHHHhhhhhcCc
Confidence 2499999999999999999999976543
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=94.50 E-value=0.018 Score=49.45 Aligned_cols=59 Identities=22% Similarity=0.436 Sum_probs=46.5
Q ss_pred hHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc--cccCCCChhhhhhhcccCC
Q 010166 40 FLSKTYDMVDDLATDSIVSWSP-TSNSFVVWNPPEFARDLLP--KYFKHNNFSSFVRQLNTYG 99 (516)
Q Consensus 40 Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~k~VLP--kyFkh~nfsSFvRQLN~YG 99 (516)
+..=|.++|.|+++.++|+|.. .+.-|.|.|++++++ +.- +--..-+|.++-|-|..|.
T Consensus 4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~-lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR-LWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH-HHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH-HHHHHcCCccccHHHHHHHHHHHh
Confidence 3445788999999999999999 999999999999987 333 2233457899999988863
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=94.44 E-value=0.17 Score=46.29 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
+..+.||..+++.++.+...|..|.++++..++.+++|.++-||++++ |...+.+-
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkC 57 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhc
Confidence 456789999999999999999999999999999999999999999996 77666554
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=91.56 E-value=0.21 Score=43.39 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccC
Q 010166 42 SKTYDMVDDLATDSIVSWSP-TSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 42 ~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~Y 98 (516)
.=|.++|.||++.++|+|.. ++.-|.+.|+++.++.-=. |-=..-||..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 34788999999999999998 6889999999988773221 212234788888888776
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=86.81 E-value=1.5 Score=42.76 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCCchHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhhhhhhcccC
Q 010166 34 TNAPPPFLSKTYDMVDDLATDSIVSWSP-TSNSFVVWNPPEFARDLLPK-YFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 34 ~~~~p~Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~k~VLPk-yFkh~nfsSFvRQLN~Y 98 (516)
.++.-....=|-++|+|++..++|+|.. +|--|++.|+++-++.-=-+ -=.+=||.-.-|-|..|
T Consensus 65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3445556677788999999999999999 68899999999999833221 11133555555555544
No 9
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.88 E-value=3.7 Score=37.60 Aligned_cols=58 Identities=28% Similarity=0.508 Sum_probs=40.8
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 157 GKFGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 157 g~~~LeeEve~LKrDk~~L~qELvrLRQqQ---q~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
....+..++.+|.+.+..|.+||++|-... .....++..|...+..++.|++.++.+|
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566777777788888888888877765 3444566667777777777777777665
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.76 E-value=3.5 Score=34.55 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=18.5
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRD-------KNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 161 LeeEve~LKrD-------k~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
|..++++||.+ +..|..|..+|++++......|..|..||
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455444 44444444444444444444444444443
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.35 E-value=7.4 Score=39.06 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQ 229 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~ 229 (516)
.|..+++.|+++.+.|.....++..+....+.++..|.+++..++...+.+.-+|.+.+. -|.+||.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~ 119 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 345555555666665655556666666666666666666666667777777777777666 4566664
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.65 E-value=6.3 Score=33.27 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQR 199 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~R 199 (516)
|.-||++||..++.|.+|+..++++...++..-..+.+.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888887776665555544444443
No 13
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.59 E-value=3.7 Score=33.96 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 181 RLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 181 rLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.|+++......++..|+.||..||
T Consensus 39 ~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 39 QLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Confidence 333344444444555555555544
No 14
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.36 E-value=6.6 Score=37.84 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
...++.++..|..|+..|+++...++.++..|.+++..+++-.+.|+..+-++=
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888899999999999999999999999999999888776553
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.20 E-value=9 Score=42.53 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL-QGMEQRHQQMMAFLAK 216 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL-q~mEqrQqqmmsFLak 216 (516)
.++.++..|.++|+.|..|..+||++++.++.+++.-.+.- +.+++.++++-.-+++
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999988866553 2444455555554433
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.39 E-value=5.6 Score=46.29 Aligned_cols=61 Identities=16% Similarity=0.367 Sum_probs=53.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
..++..+..|+.+++....||..++++.+.++..-..|.+|+...+++|+.++.=+.++++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999999999999999999999998887777766
No 17
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.20 E-value=9.1 Score=29.36 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
||.+.+.||++...|..+-.+|+++.+.+..++..+..+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666777777777777777777777666667776666554
No 18
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.02 E-value=16 Score=31.37 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQ 207 (516)
|.-||++||.++..|.+|+..++.....+..+.+.|.+....-..|-
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888887777777655555555555555544444433333
No 19
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=9.3 Score=43.19 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSP 221 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P 221 (516)
+.+..-+..|++.+..-.|+|..++|+...++..-..|.+|......||.-+|..+.++++.+
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 345566778888888899999999999999999999999999999999999999999998865
No 20
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=76.78 E-value=7.3 Score=38.41 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=34.5
Q ss_pred ecCCcccCcccccccceeccCCCCCCCCCccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 111 ANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASD 190 (516)
Q Consensus 111 ~h~~F~RG~~~LL~~IkRrk~~~~~~~~q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e 190 (516)
.||.|...+++||..|+=. |.. + ..+ ......+.+||++.+.++
T Consensus 17 ~~PdFf~~~~~ll~~l~~p---h~~---------~------~av------------------SL~erQ~~~LR~~~~~L~ 60 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLP---HPS---------G------GAV------------------SLVERQLERLRERNRQLE 60 (225)
T ss_dssp ------------------------------------------HH------------------HHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCC---CCC---------C------Ccc------------------cHHHHHHHHHHHHHHHHH
Confidence 7999999999999999632 111 0 011 122233446777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010166 191 SQLQTMVQRLQGMEQRHQQMMAFLAKAVQSP 221 (516)
Q Consensus 191 ~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P 221 (516)
.++..|.+.-+.-|+.++++..+..++++-.
T Consensus 61 ~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 61 EQLEELIENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888877743
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.40 E-value=20 Score=33.80 Aligned_cols=60 Identities=30% Similarity=0.404 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
.|+.+++.+....+.|..||..++.....+...++.+..|+..+|..+..+..+|..+=+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 366677777777777888888888888888888899988888888888777776655443
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.34 E-value=45 Score=27.69 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 215 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLa 215 (516)
|+..|+.|=.-.+.|..|-..||+++......=..|.+++.....|-..|++-|-
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556666666666666666666666666666666677777766666667777653
No 23
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.43 E-value=42 Score=33.73 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
+.++-..|..+...|..|+..|+.+...++.++.+..+++..++++..++-.....+.- ++.+++...
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~L 114 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44555566666666666666666666666666666677777777776666666555554 555555544
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.06 E-value=55 Score=27.47 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAF 213 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsF 213 (516)
|+..|..+=.....|..|+..|+++.......-..|.+..+.+.+.+.....-
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888888888888887777777777777666666555544443
No 25
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=66.17 E-value=28 Score=35.72 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ-----GMEQRHQQMMA 212 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq-----~mEqrQqqmms 212 (516)
.++.+|..|-.+++.|..|-..||.+...+-.+-+.+..+|. -||.+|++++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 467788888888888888888888877777666666666654 24455555554
No 26
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.16 E-value=53 Score=28.13 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 197 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~ 197 (516)
.+=++.+|.+...+.+|+...+.+....++++..-.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi 38 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455778888888899988888887777777655533
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.44 E-value=37 Score=35.71 Aligned_cols=47 Identities=30% Similarity=0.594 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.+.++++.|+.+...|.+||..|.++...++.++..+......+++.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999988877665544
No 28
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=60.79 E-value=32 Score=36.82 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=30.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 158 KFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 158 ~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
.++|..|.++||++++.|..||.+|...... ..+.+|++.++..-..+..
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~-----s~V~E~vet~dv~~d~i~K 83 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLR-----SHVCEDVETNDVIYDKIVK 83 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHHHHHHHHHH
Confidence 4567888888888888888888877332111 2355555555443333333
No 29
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.41 E-value=99 Score=25.41 Aligned_cols=56 Identities=9% Similarity=0.297 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 216 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak 216 (516)
+.+++.+++.+.+.+...+..|.+.....+.++..+.++|..++..++=+..++.-
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777888888888888888888888888888888877765555443
No 30
>PRK10963 hypothetical protein; Provisional
Probab=57.97 E-value=39 Score=33.58 Aligned_cols=73 Identities=14% Similarity=0.282 Sum_probs=41.9
Q ss_pred ecCCcccCcccccccceeccCCCCCCCCCccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 111 ANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASD 190 (516)
Q Consensus 111 ~h~~F~RG~~~LL~~IkRrk~~~~~~~~q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e 190 (516)
.||.|.-.+++||..|+=.-+..+ ....+ +- .+.+||++.+.++
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~g---------------aVSL~-------Er--------------Q~~~LR~r~~~Le 57 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVRG---------------TVSLV-------EW--------------QMARQRNHIHVLE 57 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCCC---------------eecHH-------HH--------------HHHHHHHHHHHHH
Confidence 699999999999998743211000 01111 12 2335666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 191 SQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 191 ~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
.++..|++.-+.-+.-.+++.....+++.
T Consensus 58 ~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~ 86 (223)
T PRK10963 58 EEMTLLMEQAIANEDLFYRLLPLQSRLAA 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777766666555555555555555554
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.54 E-value=34 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
+..|...=.....|..||..|+.+...+...++.
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555544444444443
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.61 E-value=81 Score=29.95 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
.+.+|++.+.+....+..++..++...+.....++...+|++..+...+.+..-+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888877777766665
No 33
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.35 E-value=46 Score=32.18 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
.+..++..|+..+..|..|+.+|.+++..++..+..|..-|.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777766666666666655443
No 34
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=56.25 E-value=44 Score=30.13 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 210 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqm 210 (516)
+|..|-..-..+=.++..|..+|...-..|+.+.++|+.|..|-..|
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34443333333444444555555555555555666666665554443
No 35
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.39 E-value=31 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 193 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qL 193 (516)
|....+.|+.++..|.+|...|+.+...+...+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666666666655555444
No 36
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.11 E-value=92 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQ 209 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqq 209 (516)
+|-+.|.+....+..-+.+||.+....+.++..+..++...+..-..
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555555544443333
No 37
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=54.17 E-value=38 Score=32.79 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
.++|-++|+++...+..||+.|||-...-+.+...|.++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3678899999999999999999988888888888888775
No 38
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.15 E-value=89 Score=31.95 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 176 MQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 176 ~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
.+.|..|+++...++-++..+...|+.+.+||+.+..-|
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555566666655444
No 39
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.99 E-value=41 Score=31.53 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 166 ERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 166 e~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
+.|.+++..|++||.+|+++. ..|..++...+.+++++..|-
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~-------s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEEN-------SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777776654 445555666666777777764
No 40
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=52.40 E-value=1.1e+02 Score=27.70 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.+.|+.+-.+...|..|+...-+..+.+...|+.|..||..||
T Consensus 59 ~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 59 TEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444444444444444555555555555555544
No 41
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.47 E-value=47 Score=37.51 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..+++.++..++..|+.+|+.++++..-+.++...|.+.|+.+.++|.+|-.=+
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 346667777888899999999999999999998899999998888877755443
No 42
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=50.98 E-value=1.2e+02 Score=30.36 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
+..+.+.|......|.+|+..|++.||.+++.-+.+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l 71 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQL 71 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888877655554
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.39 E-value=96 Score=35.39 Aligned_cols=59 Identities=32% Similarity=0.448 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQ-------QQASDSQLQTMVQRLQGMEQRHQQ-MMAFLAKAV 218 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQq-------Qq~~e~qLq~L~~RLq~mEqrQqq-mmsFLak~l 218 (516)
.+++++.+||+++..|..+|.++|.+ +...++++++|.++|..+.+-..+ +..-.+++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 46777888888888888888777763 234567777788888777644433 333333333
No 44
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=50.37 E-value=9.3 Score=36.97 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
||.|| .+++.|..|++|||.+...+..++ .+.+|+.
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHH----HHHHHHHHCH----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 55555 456666777777766555555554 4444443
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.14 E-value=88 Score=34.55 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.|+.++..++.+.+.+..+|.+.....+.++..|.++..+|...+..
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 46677777777777777777666666666677777777776665533
No 46
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=49.54 E-value=66 Score=27.88 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=33.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
+++-..++.|.+++..|+++|..+.+...=...+|+.+.+|+..
T Consensus 3 ~~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~ 46 (84)
T PF11414_consen 3 YNMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRH 46 (84)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557789999999999999999988877777788887777543
No 47
>PRK14127 cell division protein GpsB; Provisional
Probab=49.46 E-value=75 Score=28.84 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
++.+-.|.+.|..|+.+|+.+...++.+|..+..|+...+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4456667777777777777777777777777777766543
No 48
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.27 E-value=54 Score=26.13 Aligned_cols=27 Identities=41% Similarity=0.609 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQ 187 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq 187 (516)
|+.++..|..++..|..++..|+++.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444333
No 49
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.21 E-value=58 Score=33.27 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 167 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 167 ~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.|..+.+.|.+||.+||-+.+...++|..|.+|-..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666655443
No 50
>PRK00295 hypothetical protein; Provisional
Probab=47.89 E-value=96 Score=25.62 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010166 190 DSQLQTMVQRL 200 (516)
Q Consensus 190 e~qLq~L~~RL 200 (516)
+.++..|.+||
T Consensus 39 ~~ql~~L~~rl 49 (68)
T PRK00295 39 QLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.25 E-value=66 Score=32.92 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=38.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
..|..|+..++++...|..||+.|...+..++.++..+..++..+|..
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888888888888888887776643
No 52
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.67 E-value=1.4e+02 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
|+..|..--.....|..|+..|+.+...+.+..+.+......++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 44455554455666777777777766665555554444333333
No 53
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.50 E-value=88 Score=33.70 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=30.1
Q ss_pred hccccChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010166 155 EVGKFGLEEEVERLKRDKNVLMQELVR--LRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 155 E~g~~~LeeEve~LKrDk~~L~qELvr--LRQqQq~~e~qLq~L~~RLq~m 203 (516)
..++..|..|++.|+.+.+.|..|+.+ +-+.++.++.+...+.+-+..|
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777777777665 4445555555555555544444
No 54
>smart00338 BRLZ basic region leucin zipper.
Probab=45.51 E-value=57 Score=26.04 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
|+.++..|..++..|..++..|+++...
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444333
No 55
>PF14282 FlxA: FlxA-like protein
Probab=44.35 E-value=1.2e+02 Score=26.96 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
....|+.|++.+..|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367888999999888888888765
No 56
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=44.25 E-value=65 Score=33.37 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQq 185 (516)
.+..|++|++.|.+|+..|+++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666555555555333
No 57
>PRK00846 hypothetical protein; Provisional
Probab=44.22 E-value=1e+02 Score=26.36 Aligned_cols=12 Identities=17% Similarity=-0.089 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 010166 207 HQQMMAFLAKAV 218 (516)
Q Consensus 207 QqqmmsFLak~l 218 (516)
|++.+.-|.+.+
T Consensus 39 qq~~I~~L~~ql 50 (77)
T PRK00846 39 ARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 58
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.14 E-value=1.4e+02 Score=29.61 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 216 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak 216 (516)
.++..|++|.....-+...+.....+--.+...+..|++||.+++.+-.+|+..|.+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778887665555555554444455567788888999999999999999888874
No 59
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.06 E-value=80 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 170 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 170 rDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
...+.|-..|.+..++...++.++..|.+||..
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444433333444444444444433
No 60
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.65 E-value=95 Score=29.28 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLR 183 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLR 183 (516)
.++..|+.+...|..++..|+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333
No 61
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.64 E-value=75 Score=28.31 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 197 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~ 197 (516)
.+..++++...+.+|+.+++++.+.+..++..|.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666655555555444
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.44 E-value=71 Score=31.83 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=14.8
Q ss_pred CCceeeC--CCcceEecCCcccCccccc
Q 010166 98 YGFRKVD--PDRWEFANEGFLRGQKHLL 123 (516)
Q Consensus 98 YGFrKv~--~d~weF~h~~F~RG~~~LL 123 (516)
.||.+|. .++--|.|..|....+.+-
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~ 92 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLR 92 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHH
Confidence 4677774 3344466666666555543
No 63
>PRK11637 AmiB activator; Provisional
Probab=42.83 E-value=1.4e+02 Score=32.24 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~m 203 (516)
+++.+.++.+.+.++|..+.++...++.+|..+.+++...
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444333
No 64
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=42.70 E-value=2.4e+02 Score=31.39 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG----MEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~----mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
.+..|.++|+++...|.+++.++..+++.+.+++..+..+-.. +.+.++..-.|....++-.+-+..+-.+.
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 3556778888888889999999988888888888887766333 33334445555555666555665555444
No 65
>PRK11637 AmiB activator; Provisional
Probab=41.96 E-value=1.4e+02 Score=32.35 Aligned_cols=42 Identities=7% Similarity=0.171 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.+++.|.++...+..++..++++...++.++..+..++...+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444
No 66
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.63 E-value=1.7e+02 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 177 QELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 177 qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.||++|+|.-.++.+.=++..=|..+.+++
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk 76 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQK 76 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 578899998888888877776666555544
No 67
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=41.54 E-value=1.2e+02 Score=28.83 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 162 EEEVERLKRDKNVLMQEL------------VRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 162 eeEve~LKrDk~~L~qEL------------vrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
..+..+|++|...|.+|+ .+|+++....+.+++.+.+.+...+.+.+..+..+..++
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVL 107 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556655555555 445555555555555555555554444444544443333
No 68
>PRK04406 hypothetical protein; Provisional
Probab=41.44 E-value=1.1e+02 Score=25.78 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 010166 207 HQQMMAFLAKAV 218 (516)
Q Consensus 207 QqqmmsFLak~l 218 (516)
|++.+.-|.+-+
T Consensus 37 Qq~~I~~L~~ql 48 (75)
T PRK04406 37 QQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 69
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.34 E-value=24 Score=39.51 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 205 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEq 205 (516)
+..+++.+| +.+.|.+||..|++|+. .|.+|+...|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 345555555 66666666666665555 55555555444
No 70
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.26 E-value=1.9e+02 Score=29.58 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
...|+..+++..+.|..|+..|+.+...++.+|..+..++...-...+..+.
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~ 265 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIA 265 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777777777777777777777777777666554433333333
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.07 E-value=2.4e+02 Score=25.91 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
|...|.++.-+...|..|+.+|.++......+|-.+..+...++..
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888999999999999999999999999988887766544
No 72
>PRK09039 hypothetical protein; Validated
Probab=40.82 E-value=1.5e+02 Score=31.65 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
+..++..+|........+|.+|++|...++.|+..+...|...|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444455555555555555555555554444
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.79 E-value=1.1e+02 Score=31.49 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQ 207 (516)
+..++++++++...+..|+..++.|...++..|+.+.+|+...+.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777766655443
No 74
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=40.73 E-value=80 Score=31.46 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
++|-+.|+.+...+..||+.|||-...-+.....|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778888888888888888887777666677777665
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.11 E-value=1.1e+02 Score=35.96 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQq 185 (516)
.|+.+|++||.|.+...+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 48899999998866655544455554
No 76
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.09 E-value=1.7e+02 Score=30.77 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQ 184 (516)
|+..++.|+.|+..|++
T Consensus 182 l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 182 LRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444333333
No 77
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=39.71 E-value=57 Score=37.50 Aligned_cols=71 Identities=32% Similarity=0.458 Sum_probs=41.7
Q ss_pred cCCcccCcccccccceeccCCCCCCCCCccccccccCCcccchh---ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 112 NEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVE---VGKFGLEEEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 112 h~~F~RG~~~LL~~IkRrk~~~~~~~~q~qq~~~~~~s~~a~~E---~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
...|..-+..|++.|+||...+.. .| .|.. ..-..|+.+|+.|+++|+.|++| +..
T Consensus 478 ~~~lte~QLslIrDIRRRgKNkvA-----AQ---------nCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~ 536 (604)
T KOG3863|consen 478 KYKLTEEQLSLIRDIRRRGKNKVA-----AQ---------NCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDE 536 (604)
T ss_pred hcccCHHHHHHhhccccccccchh-----cc---------chhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 445666688889999877432211 01 1211 01135788888888888866655 444
Q ss_pred HHHHHHHHHHHHHHH
Q 010166 189 SDSQLQTMVQRLQGM 203 (516)
Q Consensus 189 ~e~qLq~L~~RLq~m 203 (516)
++..|..|.+.|..|
T Consensus 537 ~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 537 LDSTLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655554
No 78
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.57 E-value=2.4e+02 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
+...+.++..|+..|...+.+|+.+....+.++.....+...++.+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666565555555555544433
No 79
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.49 E-value=94 Score=34.86 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.++|+++...|.+|+..+.++.+..+.+|..|...++.++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 80
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=38.96 E-value=2.9e+02 Score=25.34 Aligned_cols=47 Identities=30% Similarity=0.331 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 210 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqm 210 (516)
++..|.+.+-.+..+|..+|.+....-..++.+..+....+++++.+
T Consensus 42 ~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 42 ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433444444444444444444444444444444444444
No 81
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=38.95 E-value=1.1e+02 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQL 193 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qL 193 (516)
.+..|+.|..++..|.+|+..|+.+......+-
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655544443333
No 82
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.79 E-value=1.9e+02 Score=30.55 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010166 167 RLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 167 ~LKrDk~~L~qELvrLRQqQq~ 188 (516)
.|+..++.|+.|+..|++.+..
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3334444444444444443333
No 83
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.69 E-value=1.7e+02 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=12.8
Q ss_pred cCCcccCcccccccceeccCC
Q 010166 112 NEGFLRGQKHLLRSISRRKPA 132 (516)
Q Consensus 112 h~~F~RG~~~LL~~IkRrk~~ 132 (516)
|-.|...+...|+.|+|-+..
T Consensus 35 ~R~y~~~dl~~L~~I~~l~~~ 55 (175)
T PRK13182 35 HYIFTEEDLQLLEYVKSQIEE 55 (175)
T ss_pred CEEECHHHHHHHHHHHHHHHc
Confidence 444455556778888765543
No 84
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.42 E-value=1.9e+02 Score=29.63 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.+|+++|++++..+..++..+.++|...+.++..+.-.|..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999888877765
No 85
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.27 E-value=2.3e+02 Score=30.16 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH----------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ--------QQQAS----------DSQLQTMVQRLQ----GMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ--------qQq~~----------e~qLq~L~~RLq----~mEqrQqqmmsFLak~l 218 (516)
|...+..|..+|..|..|..+|+. +|+.+ ..+|..|.+-|. .....|.++.+.|++++
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777762 22222 223333333332 23355778999999888
Q ss_pred cCchHHHHHHHhhh
Q 010166 219 QSPGFLAQFVQQQN 232 (516)
Q Consensus 219 Q~P~fL~qlv~~~~ 232 (516)
.--.-+.++....+
T Consensus 245 dlQ~r~k~~~~EnE 258 (306)
T PF04849_consen 245 DLQQRCKQLAAENE 258 (306)
T ss_pred HHHHHHHHHhhhHH
Confidence 64444444444433
No 86
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.27 E-value=2.6e+02 Score=24.09 Aligned_cols=42 Identities=24% Similarity=0.623 Sum_probs=24.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRD-KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 163 eEve~LKrD-k~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
.+++++.++ ++.|.+|+..| +..|..|.+|+...+..+.++-
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~L-------Q~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILEL-------QDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 55555555554 5567777777777666655543
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.23 E-value=1.9e+02 Score=30.14 Aligned_cols=62 Identities=15% Similarity=0.351 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCc
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR---HQQMMAFLAKAVQSP 221 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr---QqqmmsFLak~lQ~P 221 (516)
.++.+|+.|..+.+.++.++..++.+...+...|..+...+..++.+ ++.++.-=+|+||-.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555555555555555555555444433 344555555666644
No 88
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.98 E-value=1.3e+02 Score=27.00 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010166 188 ASDSQLQTMVQRLQGM 203 (516)
Q Consensus 188 ~~e~qLq~L~~RLq~m 203 (516)
.+.-+-+.|.+||...
T Consensus 40 ~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 40 RLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 89
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.32 E-value=2.7e+02 Score=32.42 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQ 207 (516)
.|..+|++|+.+...|.++|..+.++....+..+..+.+++.....||
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555555555555555544444433
No 90
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.14 E-value=1.9e+02 Score=26.56 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
++.|...+..|-.....++.+......++......++.++.+.+....
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333334444444333333
No 91
>PRK09039 hypothetical protein; Validated
Probab=36.98 E-value=1.9e+02 Score=30.83 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
...++.+...+...|.+||..||.|...++..|...+++....+.+-..+-.-|.+++
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777788888888888888888888887777555555444444444443
No 92
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.11 E-value=2.4e+02 Score=22.95 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
|++|..|.+.|...+..|.+....+...++...+.-.+..+|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443334344444444444443333
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.97 E-value=3.6e+02 Score=25.22 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
++..+..|..++..+-+||..|.++.+.++.+|..+..+|....
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666665555555555555555555443
No 94
>PRK02119 hypothetical protein; Provisional
Probab=35.95 E-value=1.6e+02 Score=24.69 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 010166 207 HQQMMAFLAKAV 218 (516)
Q Consensus 207 QqqmmsFLak~l 218 (516)
|++.+.-|.+-+
T Consensus 35 Qq~~id~L~~ql 46 (73)
T PRK02119 35 QQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 95
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.71 E-value=3.1e+02 Score=25.27 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=5.3
Q ss_pred hcccCCceee
Q 010166 94 QLNTYGFRKV 103 (516)
Q Consensus 94 QLN~YGFrKv 103 (516)
+|-.+||-..
T Consensus 10 ~L~s~G~~~~ 19 (151)
T PF11559_consen 10 QLLSRGYPSD 19 (151)
T ss_pred HHHHCCCCCC
Confidence 3555666544
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.93 E-value=3e+02 Score=26.08 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
+..++..++.+...+..++...++..+..+..+..+.+++..+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555555566666666666665555554
No 97
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=34.87 E-value=2.3e+02 Score=23.42 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 175 LMQELVRLRQQQQASDSQLQTMVQ 198 (516)
Q Consensus 175 L~qELvrLRQqQq~~e~qLq~L~~ 198 (516)
+..++.+|||+....+.-+..|++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 556677888888888888888875
No 98
>PRK15396 murein lipoprotein; Provisional
Probab=34.81 E-value=2.8e+02 Score=23.79 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
+++.|..+.+.|..++..+++..+.+...++.-.+.-.+..+|-..+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666665555555554443
No 99
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.67 E-value=2e+02 Score=28.67 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrL 182 (516)
||..||..++.|+.|-+.|
T Consensus 56 EIR~LKe~NqkLqedNqEL 74 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQEL 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 100
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.15 E-value=1.8e+02 Score=23.81 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 171 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 171 Dk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
-++.|..||.+.+.....++.+|++...|...++..
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666666666666666665554433
No 101
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.07 E-value=1.6e+02 Score=27.18 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
++-++.|+...+.|...+..|+.|+..++.++..|...|+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777777777777777777777777777766666554
No 102
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.98 E-value=4e+02 Score=30.62 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQq 185 (516)
+++...++++.|+++...|+++
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e 165 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEE 165 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 103
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.93 E-value=2.3e+02 Score=25.17 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 169 KRDKNVLMQELVRL--RQQQQASDSQLQTMVQRLQGMEQRHQQM 210 (516)
Q Consensus 169 KrDk~~L~qELvrL--RQqQq~~e~qLq~L~~RLq~mEqrQqqm 210 (516)
.+-...|.+++..| ++....++..|..|..++..++.+-+.|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44445555555555 5555555555555555555555444443
No 104
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.65 E-value=78 Score=32.03 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=44.4
Q ss_pred ceEecCCcccCcccccccceeccCCCCCCCCCccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 108 WEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ 187 (516)
Q Consensus 108 weF~h~~F~RG~~~LL~~IkRrk~~~~~~~~q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq 187 (516)
|-+.||.|.+-+++|+..|.=+.+..+. ...+ +- .|.++|++..
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t---------------VSLv-------e~--------------ql~r~R~~~~ 55 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT---------------VSLV-------ER--------------QLARLRNRIR 55 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe---------------eehH-------HH--------------HHHHHHHHHH
Confidence 4568999999999999999643322211 1111 12 2335555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 188 ASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 188 ~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
.++.++..+.+--..-+.-+.+++..-..+++
T Consensus 56 ~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 56 ELEEELAALMENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666666555555556666655555444
No 105
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=33.60 E-value=7e+02 Score=27.64 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV-QRLQGMEQR 206 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~-~RLq~mEqr 206 (516)
.+.+.+|+...+.+.+|+++-+.+.+.+-..|..-. ..+..||+-
T Consensus 176 peq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~Meqv 221 (472)
T KOG2856|consen 176 PEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQV 221 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456777777777778888888776665544443321 225556544
No 106
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=33.55 E-value=1.9e+02 Score=28.50 Aligned_cols=25 Identities=48% Similarity=0.527 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 177 QELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 177 qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
.||-.||++|..++.+|..-..+|.
T Consensus 130 ~~lD~Lr~qq~~Lq~qL~~T~RKLE 154 (179)
T PF13942_consen 130 SELDALRQQQQRLQYQLDTTTRKLE 154 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.06 E-value=1.8e+02 Score=33.20 Aligned_cols=8 Identities=50% Similarity=0.758 Sum_probs=4.0
Q ss_pred hhhhhccc
Q 010166 74 FARDLLPK 81 (516)
Q Consensus 74 F~k~VLPk 81 (516)
|....||+
T Consensus 77 F~ayyLPk 84 (546)
T PF07888_consen 77 FQAYYLPK 84 (546)
T ss_pred ECcccCCC
Confidence 44555553
No 108
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=32.41 E-value=3.4e+02 Score=28.19 Aligned_cols=43 Identities=35% Similarity=0.380 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
+|-.|+.+++.+.+.|-+||.-+--||+.++.-|-.+++.+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778999999999999999999999999999999999888654
No 109
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=32.27 E-value=2e+02 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELV 180 (516)
Q Consensus 164 Eve~LKrDk~~L~qELv 180 (516)
++++|+.++..++..|.
T Consensus 2 ~~~~Le~ek~~~~~rI~ 18 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIK 18 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45566666655444433
No 110
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.03 E-value=1.7e+02 Score=23.66 Aligned_cols=11 Identities=9% Similarity=0.522 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 010166 203 MEQRHQQMMAF 213 (516)
Q Consensus 203 mEqrQqqmmsF 213 (516)
+++.=+.+|+.
T Consensus 33 i~envk~ll~l 43 (55)
T PF05377_consen 33 IEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 111
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.84 E-value=3.5e+02 Score=27.30 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
+..+++.|+.+...|..|+..++.+.......+....+|..+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555443
No 112
>PRK14143 heat shock protein GrpE; Provisional
Probab=31.62 E-value=3.3e+02 Score=27.87 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
...++..|+.+...|.+|+..|+.+...+...+.++.+|..+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888777777777777777765
No 113
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.56 E-value=86 Score=24.29 Aligned_cols=22 Identities=41% Similarity=0.666 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrL 182 (516)
|+.++..|..++..|.+++..|
T Consensus 30 le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444
No 114
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.72 E-value=2e+02 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
++.++.++.-..+.+..|+..++...+.++..++.|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444444444444333
No 115
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.71 E-value=3.1e+02 Score=31.92 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010166 171 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 220 (516)
Q Consensus 171 Dk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~ 220 (516)
++..|.+||.+||-+.+.++.+|..++..+...|...++|..-+..+-+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888888777777776655544443
No 116
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.53 E-value=2.4e+02 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
++..|..+...|..|+..|+++...++.+|..|
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 117
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.46 E-value=2.1e+02 Score=26.08 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 010166 190 DSQLQTMVQRLQ 201 (516)
Q Consensus 190 e~qLq~L~~RLq 201 (516)
+.+-..|.+||.
T Consensus 42 ~iEN~~Lr~~l~ 53 (110)
T PRK13169 42 RLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 118
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.29 E-value=2.9e+02 Score=22.68 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 010166 207 HQQMMAFLAKAV 218 (516)
Q Consensus 207 QqqmmsFLak~l 218 (516)
|++.+.-|.+.+
T Consensus 30 Qq~~I~~L~~~l 41 (69)
T PF04102_consen 30 QQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 119
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=29.96 E-value=3.8e+02 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 177 QELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 177 qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
+|+.+|+++.......+..|.++...++.-++.++..+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444444444444433
No 120
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=29.81 E-value=3.2e+02 Score=23.67 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
+.++.+-.+++.|+.++..+.++.+.
T Consensus 37 ~~l~~~~~~k~~l~~~l~~le~~r~~ 62 (143)
T PF05130_consen 37 DELEELVEEKQELLEELRELEKQRQQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777776665554
No 121
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.77 E-value=1.5e+02 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.659 Sum_probs=4.0
Q ss_pred CchHHHHHH
Q 010166 220 SPGFLAQFV 228 (516)
Q Consensus 220 ~P~fL~qlv 228 (516)
+|.++..+.
T Consensus 53 ~~~~ie~~A 61 (80)
T PF04977_consen 53 DPDYIEKVA 61 (80)
T ss_pred CHHHHHHHH
Confidence 444444333
No 122
>PRK14127 cell division protein GpsB; Provisional
Probab=29.74 E-value=1.5e+02 Score=26.95 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDS 191 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~ 191 (516)
+++.|.+++..|..|+.+|+++....+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 123
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.66 E-value=3.1e+02 Score=23.71 Aligned_cols=49 Identities=18% Similarity=0.471 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQ---QQASDSQLQTMVQRLQGMEQRHQ 208 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQq---Qq~~e~qLq~L~~RLq~mEqrQq 208 (516)
.+..+++.|+.+++.+-.++..+... -+.+..++..+.+.+..+|....
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777666555442 23333344444444444444433
No 124
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=29.55 E-value=3.4e+02 Score=29.67 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 169 KRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 169 KrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
+.|...+...++.++-+++.++..++.+++.+..+-++.+++|......+|
T Consensus 329 nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLq 379 (400)
T COG5613 329 NAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQ 379 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666777777888888888888877787887777666666
No 125
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.55 E-value=3.2e+02 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
+++.++.-...+..++..|+.....+..+|..+.+|.
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~ 81 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRH 81 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444444443333
No 126
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=29.28 E-value=2.7e+02 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQq 185 (516)
+.+++++|+++.+.+..++.++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444443
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.04 E-value=3.3e+02 Score=30.66 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
|-.++.+++++.+.|..|-.+|+++.+.++.+-.++.+|++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44566666666666666666666666666555555555544
No 128
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.89 E-value=2.6e+02 Score=27.29 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
+..++..|+.+++.|..++..++.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.87 E-value=4.6e+02 Score=25.38 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVR 181 (516)
Q Consensus 165 ve~LKrDk~~L~qELvr 181 (516)
+..|+.+...|..++..
T Consensus 118 l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKD 134 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.73 E-value=3e+02 Score=30.37 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHhcCchHH
Q 010166 211 MAFLAKAVQSPGFL 224 (516)
Q Consensus 211 msFLak~lQ~P~fL 224 (516)
..++...+..++|-
T Consensus 405 ~~~i~~~~~~~g~~ 418 (562)
T PHA02562 405 RGIVTDLLKDSGIK 418 (562)
T ss_pred HHHHHHHHHhhhHH
Confidence 34444444555544
No 131
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=28.70 E-value=2.2e+02 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
+.+++..|+..++.|..|+.+|++++..++..+..|..-+.+
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999888888765433
No 132
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.32 E-value=1.6e+02 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQq 185 (516)
..+|++++..|.+|+..|+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 71 LFDLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444433
No 133
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.12 E-value=2.7e+02 Score=30.41 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=39.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 158 KFGLEEEVERLKRDKNVLMQELVRLRQQ----QQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 158 ~~~LeeEve~LKrDk~~L~qELvrLRQq----Qq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
...+..+++.|+.+++.+-.++..+++. .+.+..++..+.+++..+|...+.+-.-+
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999998888765432 33555566777777777777666555443
No 134
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.03 E-value=3e+02 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLR 183 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLR 183 (516)
++.|......|..|...|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 28 IEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 135
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.98 E-value=3.1e+02 Score=26.56 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 228 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv 228 (516)
..|..-|..| ++++....+|..|.+.+...+.+-+.++.-|..|-+ .|..++
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3444445555 344556888888888888888888888888877776 566666
No 136
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.68 E-value=1.2e+02 Score=32.69 Aligned_cols=53 Identities=19% Similarity=0.454 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQ----QASDSQLQTMVQRLQGMEQRHQQMMAF 213 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQ----q~~e~qLq~L~~RLq~mEqrQqqmmsF 213 (516)
|..|++.+|+.......++..+.... ..+...+..+++|+..+|.+...|-.-
T Consensus 110 lkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~ 166 (370)
T PF02994_consen 110 LKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQA 166 (370)
T ss_dssp --------H-------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Confidence 55666667665555555555554433 245567777777777777776655443
No 137
>PRK10722 hypothetical protein; Provisional
Probab=27.67 E-value=2.1e+02 Score=29.61 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 176 MQELVRLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 176 ~qELvrLRQqQq~~e~qLq~L~~RLq~m 203 (516)
-.++-+|||||..++.+|....++|..+
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777666666666666666653
No 138
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.64 E-value=2.7e+02 Score=31.53 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=18.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
..+.+.+..+++.+..|..|+.++++
T Consensus 309 ~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 309 KELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777766
No 139
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.57 E-value=3.4e+02 Score=28.45 Aligned_cols=59 Identities=27% Similarity=0.448 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQT--------MVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~--------L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
+-+..|+..++.|..||.+|.+.++.++.+|.+ +-.|+++ .-.+|..++| -|++-+.+.
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqG-------FkdYLvGsLQ---DLa~saEqL 70 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQG-------FKDYLVGSLQ---DLAQSAEQL 70 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhh-------hHHHHHHHHH---HHHHHHHhh
Confidence 345667778888888888888877777777654 4455555 4567777777 355444443
No 140
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.30 E-value=3.8e+02 Score=27.27 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
.-|+.++++++.|.+|=..+-++.+.+...+..|..-+...+.-..++..-..+++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777787776666667777777777777777666655555555544444
No 141
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.30 E-value=4.2e+02 Score=23.15 Aligned_cols=23 Identities=4% Similarity=0.315 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010166 181 RLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 181 rLRQqQq~~e~qLq~L~~RLq~m 203 (516)
...++....+++++.|.+|....
T Consensus 12 ~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 12 KAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 142
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.10 E-value=2.6e+02 Score=32.88 Aligned_cols=58 Identities=28% Similarity=0.363 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQ-------RLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~-------RLq~mEqrQqqmmsFLak~l 218 (516)
-.+.+.+|.+|...|..||...||.-+.+..+|..+.. .|+.+.+...+|..=|..+.
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999988888888665432 24444444444444443333
No 143
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.91 E-value=4.6e+02 Score=28.00 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 228 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv 228 (516)
.+++...|+.+|+.|++.-+..-..-..|.++|..+...|+++.+=|.-+=..-.-...++
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555666777777777776665544444333333333
No 144
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=26.84 E-value=5.9e+02 Score=28.24 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=8.6
Q ss_pred CchHHHHHHhhcCC
Q 010166 38 PPFLSKTYDMVDDL 51 (516)
Q Consensus 38 p~Fl~KLy~mv~dp 51 (516)
..|+.-+..+..+.
T Consensus 130 r~~~~gi~~~~~~~ 143 (455)
T KOG3850|consen 130 RDFPTGIRKAKGMT 143 (455)
T ss_pred hhhhhHHHHHhccc
Confidence 34666666666654
No 145
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.75 E-value=4.7e+02 Score=26.00 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.++.+++.|+.....|..|+..|+.+.......+.++.+|+++
T Consensus 37 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888877777777777777777765
No 146
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.46 E-value=6.3e+02 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.5
Q ss_pred HhcCchHHHHHHHh
Q 010166 217 AVQSPGFLAQFVQQ 230 (516)
Q Consensus 217 ~lQ~P~fL~qlv~~ 230 (516)
+.|.-+|=.-++.+
T Consensus 137 vqQk~~~kn~lLEk 150 (201)
T PF13851_consen 137 VQQKTGLKNLLLEK 150 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 147
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.40 E-value=5.9e+02 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
|..-++.| ..+..+.++|..|+++....+.++..+...|..+++.-..++
T Consensus 14 L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666 345567888889999999999999999999888776665555
No 148
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=26.37 E-value=1.4e+02 Score=30.55 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 188 ASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 188 ~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
.++.+.+.+..+|+.++.+++.|..|++++-+
T Consensus 33 ~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 33 EIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777888889999999998877654
No 149
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.30 E-value=3.6e+02 Score=21.94 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
|..+|..|+.....|.+|+..||..-+....+-..-.+||...-
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56677777777777777777777777777777777778877643
No 150
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.11 E-value=4.1e+02 Score=23.06 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
++.++..|..|...|-+||-........++.--..+..||...-..-+.++.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 151
>smart00338 BRLZ basic region leucin zipper.
Probab=26.02 E-value=2.7e+02 Score=22.11 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 197 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~ 197 (516)
.+..|....+.|..|...|+.+...+..++..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444444443
No 152
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.95 E-value=3e+02 Score=24.98 Aligned_cols=47 Identities=30% Similarity=0.440 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.+++-++.|++..+.|...+..+.++......++..+.+.++.+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666666666666666666666666554443
No 153
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.56 E-value=4.9e+02 Score=26.74 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQ 226 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~q 226 (516)
.-+...+.++...+..++..++..++.++..+..+.+.+...-+..++++.-+.+.+++-+-+.+
T Consensus 236 ~i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~ 300 (306)
T PF04888_consen 236 QIASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQA 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445544444445555555555555555566666665555554443333
No 154
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=25.50 E-value=3.6e+02 Score=26.88 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 216 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak 216 (516)
|.++.+.|.++|..-+.+++..+.....+..+|..=-.|+++++.+|.+
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~ 187 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVK 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555566666666666666666655667777766643
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.39 E-value=5.6e+02 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
++.+|..|.+.+..|..||-.+..+.......+..
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555544444444443333333
No 156
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.39 E-value=2.2e+02 Score=27.04 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
+++-++.|++.++.|...+..|.+..+.+..++..+.+.++.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655555555544444444444444444443
No 157
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.33 E-value=4e+02 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 179 LVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 179 LvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
|..|+.+....+..+....+.|+.+|...+....-+.+-.
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555554444443333
No 158
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.24 E-value=3.2e+02 Score=31.38 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.++.++..+|+++..|..|+.+|+++...+..+|+.+...|..
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999877643
No 159
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.20 E-value=1.9e+02 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrL 182 (516)
+.+..|..+...|..||..|
T Consensus 8 ~~l~~le~~l~~l~~~~~~L 27 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEEL 27 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 160
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.13 E-value=3.4e+02 Score=30.80 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=34.2
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 010166 157 GKFGLEEEVERLKRDKNVLMQELVRLRQQ----------QQASDSQLQTMVQRLQG 202 (516)
Q Consensus 157 g~~~LeeEve~LKrDk~~L~qELvrLRQq----------Qq~~e~qLq~L~~RLq~ 202 (516)
....+.+.+..+++.+..|..|+.+|++. ...++.++..+.+++..
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE 366 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888888888887 66777777777666553
No 161
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.02 E-value=49 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=16.3
Q ss_pred hhcCCCCCCcEEEcCCCCeEEEe
Q 010166 47 MVDDLATDSIVSWSPTSNSFVVW 69 (516)
Q Consensus 47 mv~dp~~~~iIsWs~~G~sFvI~ 69 (516)
+++.+..+....|++||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666667778999999998764
No 162
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=25.00 E-value=3e+02 Score=30.99 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=29.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..+..++..|.++...+.+- |-+.++.+..|+..|...+..|...+.-|..||
T Consensus 425 ~~l~~~i~~l~~~i~~~~~r---l~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l 477 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKR---LEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQL 477 (483)
T ss_pred cchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666655533 333445555556666666666555555555544
No 163
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.85 E-value=5e+02 Score=25.30 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 174 VLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQ 209 (516)
Q Consensus 174 ~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqq 209 (516)
.|.+++..+..+...+...|..|..++..++.+...
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444433
No 164
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=24.78 E-value=2.7e+02 Score=25.10 Aligned_cols=53 Identities=11% Similarity=0.279 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
.|=+|.+.+|.+...+.+.|....+..+....++--|+.+...+|.+...|-.
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q~ekiflmekkfe~lekkyeslnk 120 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYESLNK 120 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 35577888888888777777777666666667777777777777777665543
No 165
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.28 E-value=2e+02 Score=30.13 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
++.|++..+.+-..|..+|..|+.+......+|..|.+.+.+
T Consensus 69 ~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 69 KEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555544444444444444444444444444443
No 166
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=5.1e+02 Score=25.19 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKA-VQSP 221 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~-lQ~P 221 (516)
++.||..+-.---.+.+||-+-++-+..++.+-+...+-+...|..--.-|.+|..| ...|
T Consensus 17 iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~tGqp 78 (180)
T KOG4057|consen 17 IEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCTGQP 78 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455665555555567789998888889999999999999999999988888888774 3444
No 167
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.15 E-value=4.6e+02 Score=27.55 Aligned_cols=49 Identities=16% Similarity=0.401 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
.+++.||.+...+..+|...|+.....+.++..+..++...+.+.+.+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566665555555556666666655555544433333
No 168
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.07 E-value=2.2e+02 Score=30.30 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 197 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~ 197 (516)
.++.++++.++.|..|+++|+.+......++..+.
T Consensus 17 ~eL~~ir~rk~qL~deIq~Lk~Ei~ev~~eid~~~ 51 (395)
T KOG0930|consen 17 MELENIRRRKQELLDEIQRLKDEIAEVMEEIDNLE 51 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 56788899999999999999887777666665543
No 169
>PF14645 Chibby: Chibby family
Probab=23.95 E-value=3.4e+02 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQAS 189 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~ 189 (516)
.+..+|++++..|..|..-||-+.+.+
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444443
No 170
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.77 E-value=4.5e+02 Score=22.40 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHhcCchHHHHHHHh
Q 010166 175 LMQELVRLRQQQQASDSQLQTMVQRLQGME---QRHQ---QMMAFLAKAVQSPGFLAQFVQQ 230 (516)
Q Consensus 175 L~qELvrLRQqQq~~e~qLq~L~~RLq~mE---qrQq---qmmsFLak~lQ~P~fL~qlv~~ 230 (516)
|.+|+..||+-...++.-+..|..-...|+ ..++ .|+.--.+++-..+|.++++..
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~Ll~d 64 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQRLLLD 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555555544444444444433322222 2232 3555445566666666666643
No 171
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=23.66 E-value=3.5e+02 Score=20.98 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 171 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 171 Dk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
+++.|-.+|..| ..-|.+..+-|..|-..+ .+|.+|.+..
T Consensus 3 q~s~L~~qL~qL-------~aNL~~t~~~l~~~s~Q~-~~i~~LG~~~ 42 (45)
T PF08227_consen 3 QYSHLASQLAQL-------QANLADTENLLEMTSIQA-NSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 344444444444 444555555555554444 7888887754
No 172
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=23.66 E-value=5.2e+02 Score=22.91 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASD 190 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e 190 (516)
+.+.-++++.+..|++|+..|..+.....
T Consensus 23 ~~~~l~l~~~n~el~~el~~l~~~~~~~~ 51 (106)
T PF05837_consen 23 EKKRLRLKRRNQELAQELLELAEKQKSQR 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34444566677777777777766554433
No 173
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.64 E-value=6e+02 Score=26.77 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
++..+..|..+++.|..|+.+++.+|.....+.+.
T Consensus 57 ~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~ 91 (333)
T KOG1853|consen 57 LETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQ 91 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666677777777776666554444433
No 174
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=23.53 E-value=2.6e+02 Score=25.22 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
|.++|..+..-.++|-.--.+--|..+.++.+|+.|..++...|.-++.++
T Consensus 45 llekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 45 LLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 444555555444444333222223446677777777777777666555543
No 175
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.51 E-value=3.6e+02 Score=23.52 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~m 203 (516)
..+-+..|....+.|..++.++..+...++.++..+..+|..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888888888888888888877777653
No 176
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=23.34 E-value=40 Score=30.42 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010166 172 KNVLMQELVRLRQQQQASDS 191 (516)
Q Consensus 172 k~~L~qELvrLRQqQq~~e~ 191 (516)
...|..++.++...|..++.
T Consensus 59 I~~L~~~v~~~~~~Q~~ld~ 78 (116)
T PF05064_consen 59 ISKLYSEVQKAESEQKRLDQ 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 177
>PLN03223 Polycystin cation channel protein; Provisional
Probab=23.28 E-value=2.4e+02 Score=35.78 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
...|.++...|.+-+.||-+-|+.+-.--..|.+|-.+|-.+|.++...+-|.+
T Consensus 1573 ~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~ 1626 (1634)
T PLN03223 1573 GDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKIL 1626 (1634)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhc
Confidence 666667777777777777665555544445566666677777777777666654
No 178
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.14 E-value=5.9e+02 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhh
Q 010166 208 QQMMAFLAKAVQSPGFLAQFVQQQN 232 (516)
Q Consensus 208 qqmmsFLak~lQ~P~fL~qlv~~~~ 232 (516)
..|++||.+.+..+..|..||..+.
T Consensus 187 ~~m~~~l~~e~e~~~~l~~Lv~AQl 211 (248)
T cd07619 187 ADMYSFVAKEIDYANYFQTLIEVQA 211 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999998763
No 179
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.03 E-value=3.3e+02 Score=29.53 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQ---ASDSQLQTMVQRLQGMEQRHQQMMAFLA 215 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq---~~e~qLq~L~~RLq~mEqrQqqmmsFLa 215 (516)
.+.+-++.|+.+.+.|..++.+|..+.. ...+++..+.+.+...+++..++..+++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777776655321 4556777777777777777777666543
No 180
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.92 E-value=2e+02 Score=30.18 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
|+++++.|+++++.|.+|+..++.+...
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555555555444333
No 181
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.56 E-value=4.3e+02 Score=21.62 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 010166 174 VLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 228 (516)
Q Consensus 174 ~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv 228 (516)
.+.+.|.++...+..++..+..++.+....|..-..+-.-|.++-.+...+-+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777766665666666666555554444444
No 182
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.48 E-value=6.6e+02 Score=24.98 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.+++++.|+.+...|..|+..++.+...+...+.+..+|.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888888887777777777777777765
No 183
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.37 E-value=3.6e+02 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
++.-.+.|...++.|..+|..|+.++..+..+|..|..-|..
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYa 120 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYA 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788889999999999999999999998888876653
No 184
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.32 E-value=4.9e+02 Score=26.92 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKA 217 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~ 217 (516)
+.+.++.+.++|..|..|+.+|.-+....+..|..+...+..+|..-+.+..-..++
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
No 185
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.02 E-value=3.5e+02 Score=29.64 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=35.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQ---QASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQ---q~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..+..+++.|+++++.+-.++..+++.. +.+..+...+.+++..+|.....+-.-+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888887643322 2345555666667777666665554433
No 186
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.90 E-value=3.5e+02 Score=29.49 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhhh
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQN 232 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~~ 232 (516)
..+..|+..++++.+.+..++..+..|+..+-+.|.++..+-..+=-....+.+|++...
T Consensus 338 ~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 338 ASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666667777777777777777777777777766665555556666776554
No 187
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.78 E-value=3.2e+02 Score=30.58 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
|++.|+.|...+..|+..|+.|.+....+++++..++.+
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888887778888887777655
No 188
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.66 E-value=4.6e+02 Score=27.64 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrL 182 (516)
++++.|.++.+.|.+|+..|
T Consensus 64 ~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 64 QELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 189
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.61 E-value=2.7e+02 Score=25.29 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
-|+..++.|......|..++..++++...+...++.+..+.
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888888888888888888888887776654
No 190
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.51 E-value=3.2e+02 Score=30.94 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELV 180 (516)
Q Consensus 163 eEve~LKrDk~~L~qELv 180 (516)
.-++.|.++.+.|+.=..
T Consensus 499 SS~eTll~niq~llkva~ 516 (641)
T KOG3915|consen 499 SSIETLLTNIQGLLKVAI 516 (641)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 447788888777776543
No 191
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=21.35 E-value=5.4e+02 Score=26.06 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ-QQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ-qQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ 219 (516)
.|+.+-.+|.++......++.+|.. .+....+.+..|...+...+...|+.+.=|...+.
T Consensus 135 el~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~ 195 (221)
T PF10376_consen 135 ELEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMS 195 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555554445555555544 33445564445555555555555555554444444
No 192
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.30 E-value=8e+02 Score=28.56 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQAS-------DSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~-------e~qLq~L~~RLq~mEqrQ 207 (516)
.|..+++.|+++++.|..++...-+..+.+ +.+|..+..+++..+.+.
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665554433333333 334444444455444443
No 193
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.27 E-value=2.3e+02 Score=24.98 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHHhhh
Q 010166 178 ELVRLRQQQQASDSQLQTMVQRLQGME-QRHQQMMAFLAKAVQSPGFLAQFVQQQN 232 (516)
Q Consensus 178 ELvrLRQqQq~~e~qLq~L~~RLq~mE-qrQqqmmsFLak~lQ~P~fL~qlv~~~~ 232 (516)
|+.+|.+=......+|..+.+++...- .....++..-..++++|.|.........
T Consensus 36 E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 36 EIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 333444444444445555555543321 2233688888889999999988776554
No 194
>PRK06798 fliD flagellar capping protein; Validated
Probab=21.13 E-value=3.7e+02 Score=29.73 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 181 RLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 181 rLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.|..+...++.++..+.+|+...|+|
T Consensus 383 ~l~~~i~~l~~~~~~~e~rl~~~e~~ 408 (440)
T PRK06798 383 SIDNRVSKLDLKITDIDTQNKQKQDN 408 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 195
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.09 E-value=5e+02 Score=30.31 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=8.4
Q ss_pred ce--ec-cCCCCCcccc
Q 010166 461 WD--IV-HSPVPEDIES 474 (516)
Q Consensus 461 we--~l-~sp~~~d~~~ 474 (516)
++ ++ .-|+.+.+|.
T Consensus 641 yD~IIIDtPP~~~~~Da 657 (726)
T PRK09841 641 YDLVIVDTPPMLAVSDA 657 (726)
T ss_pred CCEEEEeCCCccccchH
Confidence 46 34 6677766553
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.04 E-value=3.4e+02 Score=31.66 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.++..+++|++++..|..++.+|+.....++.++..+..++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888777653
No 197
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.01 E-value=4.8e+02 Score=23.11 Aligned_cols=14 Identities=36% Similarity=0.677 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 010166 190 DSQLQTMVQRLQGM 203 (516)
Q Consensus 190 e~qLq~L~~RLq~m 203 (516)
.-.+..|..+++.+
T Consensus 78 ~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 78 RGELKELSARLQGV 91 (106)
T ss_pred HhHHHHHHHHHHHH
Confidence 33344444444443
No 198
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.97 E-value=4.3e+02 Score=25.76 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~m 203 (516)
++.++..|+.....+...+.+|+.+...++.+|..+..+...+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666664443
No 199
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.96 E-value=4.5e+02 Score=21.18 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLR 183 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLR 183 (516)
+.|+.+|.++...+..++.++.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544443
No 200
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=20.93 E-value=2.6e+02 Score=26.77 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLR 183 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLR 183 (516)
+++|+.+.+.|+.++...|
T Consensus 36 ~~~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQ 54 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444443
No 201
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.93 E-value=3.1e+02 Score=26.07 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=9.9
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQEL 179 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qEL 179 (516)
.|++|++.|+.++..+.+++
T Consensus 15 ~L~~EL~~L~~~r~~i~~~i 34 (158)
T PRK05892 15 HLEAELARLRARRDRLAVEV 34 (158)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 35555555555444444443
No 202
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=5.3e+02 Score=24.56 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
-|.++++.|++-...|.++|.+|-+....++.+++.+.++...
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999998888888888887776543
No 203
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=5.4e+02 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=13.4
Q ss_pred CCCCCCchHHHHHHhhcCC
Q 010166 33 ATNAPPPFLSKTYDMVDDL 51 (516)
Q Consensus 33 ~~~~~p~Fl~KLy~mv~dp 51 (516)
.-+.+|.|+.|+-.+++-.
T Consensus 296 DVtp~P~~V~KiAasf~A~ 314 (652)
T COG2433 296 DVTPAPETVKKIAASFNAV 314 (652)
T ss_pred cCCCChHHHHHHHHHcCCc
Confidence 3455677888888877654
No 204
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.72 E-value=2.7e+02 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQ 194 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq 194 (516)
.+.+.+++|++++..|..+...++.++..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELI 53 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444333333
No 205
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.68 E-value=2.1e+02 Score=29.35 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
||+|+.+++.+...|.+||..||.....+-.++.-|
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 206
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.64 E-value=1.8e+02 Score=22.76 Aligned_cols=31 Identities=10% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 182 LRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 182 LRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
|++....+++++.++-+.+..++.+.+.++.
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777665543
No 207
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.63 E-value=5.1e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAV 218 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~l 218 (516)
+..=-.....|+.|-.+|..++....+.|..|...+...|.....+-.-++++.
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567788888888888888888888888888777765555544444433
No 208
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.60 E-value=3.6e+02 Score=27.12 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQ 184 (516)
.++++++|+....++.|..+.++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777666666666554
No 209
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.57 E-value=4.9e+02 Score=29.45 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 170 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 170 rDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
...+.|.++|..||++.+.+..+.+++.++|..+|...+++-.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3445566667777666666666666777777666655544433
No 210
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.46 E-value=3.4e+02 Score=21.23 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010166 190 DSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 190 e~qLq~L~~RLq~mEqrQ 207 (516)
..+|..|.+||+.+|.++
T Consensus 29 t~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 29 TQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345788888888888765
No 211
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.44 E-value=4.7e+02 Score=24.17 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010166 196 MVQRLQGMEQRHQQMMAF 213 (516)
Q Consensus 196 L~~RLq~mEqrQqqmmsF 213 (516)
...|+..+.+|+..+..=
T Consensus 70 ~~~rl~~~r~r~~~L~hR 87 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHR 87 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555444443
No 212
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.41 E-value=5.1e+02 Score=25.53 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.8
Q ss_pred cccCCcee
Q 010166 95 LNTYGFRK 102 (516)
Q Consensus 95 LN~YGFrK 102 (516)
|-.+||..
T Consensus 81 LE~~GFnV 88 (190)
T PF05266_consen 81 LEEHGFNV 88 (190)
T ss_pred HHHcCCcc
Confidence 33455543
No 213
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.23 E-value=6.2e+02 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
..+.+.|+.....|..|+..|+.+.......+.+..+|...
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777777777777777777777777777665
No 214
>PRK07737 fliD flagellar capping protein; Validated
Probab=20.16 E-value=3.7e+02 Score=30.18 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 182 LRQQQQASDSQLQTMVQRLQGMEQRH 207 (516)
Q Consensus 182 LRQqQq~~e~qLq~L~~RLq~mEqrQ 207 (516)
|..+...++.++..+..||...|.|.
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555655555553
No 215
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.11 E-value=5.2e+02 Score=26.96 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 167 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 167 ~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.++.+...+..++..++.+....+.++..+.+++...+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.10 E-value=7.1e+02 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 172 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 172 k~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
...|..++..++.+...+..+|..|..++..++.+...++.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555554443
Done!