Query 010166
Match_columns 516
No_of_seqs 288 out of 1018
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 6.6E-39 2.2E-43 279.8 6.7 95 35-129 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 2.6E-38 8.9E-43 283.7 8.3 100 33-132 13-123 (125)
3 3hts_B Heat shock transcriptio 100.0 2.1E-32 7.1E-37 237.8 4.2 82 33-114 8-100 (102)
4 1awc_A Protein (GA binding pro 85.5 0.33 1.1E-05 42.6 1.9 58 42-99 5-63 (110)
5 1fli_A FLI-1; transcription/DN 85.0 0.52 1.8E-05 40.6 2.9 62 37-98 5-67 (98)
6 2jee_A YIIU; FTSZ, septum, coi 84.9 5.1 0.00018 33.3 8.8 51 161-211 25-75 (81)
7 1bc8_C SAP-1, protein (SAP-1 E 84.6 0.26 9.1E-06 42.0 0.9 75 37-111 4-83 (93)
8 2ypr_A Protein FEV; transcript 84.3 0.52 1.8E-05 40.8 2.7 76 35-110 5-85 (102)
9 4avp_A ETS translocation varia 82.9 0.77 2.6E-05 40.0 3.2 78 34-111 8-90 (106)
10 2nny_A C-ETS-1 protein, P54; p 80.7 0.66 2.2E-05 43.5 2.0 78 34-111 61-143 (171)
11 1gvj_A C-ETS-1 protein, P54; t 79.0 0.91 3.1E-05 41.6 2.4 78 34-111 36-118 (146)
12 2dao_A Transcription factor ET 75.8 2.7 9.2E-05 37.3 4.4 76 36-111 7-88 (118)
13 1wwx_A E74-like factor 5 ESE-2 72.6 2.4 8.2E-05 37.0 3.2 65 34-98 5-72 (107)
14 1deb_A APC protein, adenomatou 72.0 17 0.00057 27.8 7.2 40 161-200 8-47 (54)
15 1hbx_G ETS-domain protein ELK- 71.9 1.4 4.7E-05 40.9 1.6 75 37-111 5-84 (157)
16 1kd8_B GABH BLL, GCN4 acid bas 71.0 5.2 0.00018 28.4 4.0 27 160-186 5-31 (36)
17 3jtg_A ETS-related transcripti 70.6 1.7 5.9E-05 37.6 1.8 60 39-98 6-68 (103)
18 3m48_A General control protein 68.5 6.5 0.00022 27.5 4.0 25 160-184 4-28 (33)
19 2lf8_A Transcription factor ET 70.9 1.1 3.8E-05 40.2 0.0 35 42-76 9-44 (128)
20 1yo5_C SAM pointed domain cont 66.5 2.3 8E-05 36.4 1.8 67 35-101 8-77 (97)
21 2wt7_A Proto-oncogene protein 66.1 13 0.00043 29.0 5.9 33 160-192 27-59 (63)
22 1kd8_A GABH AIV, GCN4 acid bas 65.9 12 0.00042 26.6 5.0 27 160-186 5-31 (36)
23 3e98_A GAF domain of unknown f 65.5 17 0.00059 35.5 8.0 75 110-220 41-115 (252)
24 3tnu_B Keratin, type II cytosk 64.5 41 0.0014 29.4 9.6 42 161-202 34-75 (129)
25 1t2k_D Cyclic-AMP-dependent tr 64.3 13 0.00044 28.6 5.5 33 160-192 26-58 (61)
26 1pue_E Protein (transcription 63.8 2.7 9.4E-05 35.5 1.7 57 42-98 6-67 (89)
27 3q8t_A Beclin-1; autophagy, AT 62.5 69 0.0024 26.9 11.3 46 160-205 8-53 (96)
28 3c3g_A Alpha/beta peptide with 61.3 11 0.00037 26.4 4.0 25 160-184 4-28 (33)
29 3c3f_A Alpha/beta peptide with 60.2 12 0.0004 26.4 4.0 25 160-184 5-29 (34)
30 2wt7_B Transcription factor MA 60.1 19 0.00065 30.4 6.2 40 163-202 48-87 (90)
31 2hy6_A General control protein 60.0 12 0.0004 26.4 4.0 25 160-184 5-29 (34)
32 3he5_B Synzip2; heterodimeric 59.8 27 0.00092 25.9 6.1 37 161-204 8-44 (52)
33 1uo4_A General control protein 59.6 12 0.00041 26.3 4.0 25 160-184 5-29 (34)
34 2wq1_A General control protein 59.3 12 0.00042 26.1 4.0 25 160-184 4-28 (33)
35 2v66_B Nuclear distribution pr 58.3 69 0.0024 28.0 9.6 45 172-216 37-81 (111)
36 2oxj_A Hybrid alpha/beta pepti 58.3 13 0.00045 26.1 4.0 25 160-184 5-29 (34)
37 2jee_A YIIU; FTSZ, septum, coi 57.8 81 0.0028 26.2 9.7 35 161-195 11-45 (81)
38 2yy0_A C-MYC-binding protein; 57.1 20 0.00068 27.3 5.3 27 163-189 19-45 (53)
39 3tnu_A Keratin, type I cytoske 57.0 39 0.0013 29.6 8.1 55 161-215 36-90 (131)
40 2bni_A General control protein 55.8 15 0.00052 25.8 4.0 25 160-184 5-29 (34)
41 2xdj_A Uncharacterized protein 55.6 61 0.0021 26.8 8.5 38 177-214 27-64 (83)
42 2w83_C C-JUN-amino-terminal ki 53.9 17 0.0006 29.9 4.8 41 160-200 34-74 (77)
43 2yy0_A C-MYC-binding protein; 53.3 23 0.0008 26.9 5.2 25 161-185 24-48 (53)
44 3hnw_A Uncharacterized protein 52.7 56 0.0019 29.3 8.4 20 165-184 77-96 (138)
45 2xdj_A Uncharacterized protein 51.3 35 0.0012 28.2 6.4 33 168-200 25-57 (83)
46 1hjb_A Ccaat/enhancer binding 50.9 22 0.00075 29.8 5.1 28 161-188 41-68 (87)
47 2r2v_A GCN4 leucine zipper; co 49.9 21 0.00073 25.1 4.0 25 160-184 5-29 (34)
48 3oja_B Anopheles plasmodium-re 49.6 83 0.0028 33.1 10.7 46 161-206 507-552 (597)
49 1jnm_A Proto-oncogene C-JUN; B 49.1 14 0.00048 28.6 3.4 32 160-191 26-57 (62)
50 3oja_B Anopheles plasmodium-re 48.9 99 0.0034 32.5 11.1 25 160-184 467-491 (597)
51 1ci6_A Transcription factor AT 46.6 34 0.0012 26.6 5.3 28 161-188 28-55 (63)
52 3uux_B Mitochondrial division 46.6 97 0.0033 30.5 9.6 67 165-231 151-217 (242)
53 4dzn_A Coiled-coil peptide CC- 45.8 28 0.00097 23.7 4.0 24 161-184 7-30 (33)
54 2dgc_A Protein (GCN4); basic d 44.2 18 0.00062 28.3 3.4 26 160-185 34-59 (63)
55 4emc_A Monopolin complex subun 42.5 75 0.0026 30.2 7.9 48 181-228 31-78 (190)
56 4e61_A Protein BIM1; EB1-like 42.5 1.1E+02 0.0038 26.5 8.3 52 161-212 9-60 (106)
57 3hnw_A Uncharacterized protein 42.4 1.5E+02 0.0052 26.4 9.6 33 163-195 68-100 (138)
58 1a93_B MAX protein, coiled coi 42.1 36 0.0012 24.0 4.2 17 163-179 14-30 (34)
59 1nkp_A C-MYC, MYC proto-oncoge 40.9 45 0.0015 27.5 5.5 34 163-196 52-85 (88)
60 1nkp_B MAX protein, MYC proto- 40.5 29 0.001 28.0 4.2 31 165-195 49-79 (83)
61 1wt6_A Myotonin-protein kinase 39.7 71 0.0024 26.5 6.3 35 170-204 24-58 (81)
62 3efg_A Protein SLYX homolog; x 39.0 51 0.0018 26.8 5.4 32 171-202 29-60 (78)
63 2v66_B Nuclear distribution pr 38.9 1.6E+02 0.0053 25.7 8.8 49 161-209 40-88 (111)
64 2wt7_B Transcription factor MA 37.6 46 0.0016 28.1 5.0 37 160-196 52-88 (90)
65 1gd2_E Transcription factor PA 37.5 37 0.0013 27.3 4.2 35 160-194 33-67 (70)
66 1gu4_A CAAT/enhancer binding p 37.0 26 0.0009 28.7 3.4 26 161-186 41-66 (78)
67 4etp_A Kinesin-like protein KA 37.0 98 0.0034 32.1 8.6 41 170-210 10-50 (403)
68 2v71_A Nuclear distribution pr 35.4 2E+02 0.0069 27.2 9.6 44 172-215 90-133 (189)
69 3swy_A Cyclic nucleotide-gated 35.1 1.4E+02 0.0047 22.2 7.2 42 161-205 3-44 (46)
70 3na7_A HP0958; flagellar bioge 34.8 1.2E+02 0.004 29.2 8.3 44 161-204 37-80 (256)
71 4dzn_A Coiled-coil peptide CC- 34.1 83 0.0028 21.4 4.8 19 164-182 3-21 (33)
72 4etp_A Kinesin-like protein KA 34.0 1.1E+02 0.0038 31.7 8.4 30 175-204 8-37 (403)
73 1nlw_A MAD protein, MAX dimeri 33.8 50 0.0017 26.9 4.6 31 164-194 48-78 (80)
74 3swf_A CGMP-gated cation chann 33.7 1.9E+02 0.0066 23.5 8.4 46 160-208 4-49 (74)
75 2v71_A Nuclear distribution pr 33.2 3.2E+02 0.011 25.8 11.0 22 167-188 60-81 (189)
76 3a7p_A Autophagy protein 16; c 32.7 2.9E+02 0.01 25.3 10.5 38 163-200 68-105 (152)
77 1g6u_A Domain swapped dimer; d 32.5 1.5E+02 0.005 21.7 6.7 7 163-169 7-13 (48)
78 2aze_A Transcription factor DP 32.1 1.2E+02 0.0042 27.8 7.4 18 163-180 5-22 (155)
79 1a93_B MAX protein, coiled coi 31.5 34 0.0012 24.1 2.7 29 168-196 5-33 (34)
80 2dfs_A Myosin-5A; myosin-V, in 31.0 1.8E+02 0.006 34.2 10.2 35 177-211 984-1018(1080)
81 2dfs_A Myosin-5A; myosin-V, in 30.7 2.2E+02 0.0076 33.3 11.0 42 173-214 987-1028(1080)
82 3a2a_A Voltage-gated hydrogen 30.6 1.2E+02 0.0043 23.4 5.9 32 162-193 10-41 (58)
83 3i00_A HIP-I, huntingtin-inter 30.4 2.8E+02 0.0095 24.3 9.6 40 162-204 14-53 (120)
84 1wlq_A Geminin; coiled-coil; 2 30.0 75 0.0025 26.5 5.0 21 178-198 39-59 (83)
85 1dh3_A Transcription factor CR 29.3 41 0.0014 25.6 3.1 25 160-184 26-50 (55)
86 3ra3_B P2F; coiled coil domain 28.9 45 0.0015 22.0 2.8 17 166-182 3-19 (28)
87 3v86_A De novo design helix; c 28.5 38 0.0013 22.1 2.3 23 160-182 4-26 (27)
88 3o0z_A RHO-associated protein 28.4 3.2E+02 0.011 25.4 9.6 35 172-206 99-133 (168)
89 3cue_D Transport protein parti 28.2 36 0.0012 32.2 3.2 63 37-100 86-157 (193)
90 3a7p_A Autophagy protein 16; c 27.6 3.6E+02 0.012 24.7 9.6 32 180-211 99-130 (152)
91 3mq7_A Bone marrow stromal ant 27.5 78 0.0027 28.0 4.9 7 190-196 84-90 (121)
92 3ghg_A Fibrinogen alpha chain; 27.5 1.6E+02 0.0054 32.1 8.2 38 167-204 114-151 (562)
93 3u06_A Protein claret segregat 27.2 1.7E+02 0.0058 30.5 8.4 23 160-182 7-29 (412)
94 2zqm_A Prefoldin beta subunit 26.9 1.9E+02 0.0064 24.0 7.2 42 161-202 68-109 (117)
95 4gkw_A Spindle assembly abnorm 26.8 2.4E+02 0.0082 25.5 8.1 39 164-202 47-85 (167)
96 3kqg_A Langerin, C-type lectin 26.7 82 0.0028 27.7 5.2 13 161-173 4-16 (182)
97 3cvf_A Homer-3, homer protein 26.7 2.7E+02 0.0091 22.9 9.7 42 161-202 18-59 (79)
98 4ani_A Protein GRPE; chaperone 26.2 2.2E+02 0.0075 27.3 8.3 40 163-202 59-98 (213)
99 3na7_A HP0958; flagellar bioge 26.1 3.1E+02 0.011 26.2 9.6 45 160-204 94-138 (256)
100 1fxk_C Protein (prefoldin); ar 25.7 1.6E+02 0.0054 25.3 6.7 42 160-201 85-126 (133)
101 1gmj_A ATPase inhibitor; coile 25.6 2.6E+02 0.009 23.2 7.6 31 173-203 47-77 (84)
102 3m91_A Proteasome-associated A 25.4 1.8E+02 0.0063 21.9 6.0 35 161-195 14-48 (51)
103 2w6b_A RHO guanine nucleotide 25.0 1.9E+02 0.0064 22.4 6.0 16 160-175 14-29 (56)
104 3cve_A Homer protein homolog 1 24.8 2.8E+02 0.0094 22.4 9.7 39 163-201 14-52 (72)
105 3u06_A Protein claret segregat 24.1 2.1E+02 0.0073 29.7 8.5 36 166-201 6-41 (412)
106 3t97_C Nuclear pore glycoprote 24.0 41 0.0014 26.6 2.3 19 174-192 16-34 (64)
107 4e61_A Protein BIM1; EB1-like 23.6 3.1E+02 0.01 23.7 7.9 42 173-214 7-48 (106)
108 1y1u_A Signal transducer and a 23.6 4E+02 0.014 29.2 10.8 42 156-197 12-53 (585)
109 1deb_A APC protein, adenomatou 23.5 2.5E+02 0.0085 21.4 8.2 42 165-206 5-46 (54)
110 1ic2_A Tropomyosin alpha chain 23.5 2.8E+02 0.0097 22.1 8.3 49 161-209 25-73 (81)
111 3viq_B Mating-type switching p 23.5 2E+02 0.0069 24.0 6.5 25 160-184 5-29 (85)
112 3q0x_A Centriole protein; cent 23.2 2.9E+02 0.0099 26.8 8.6 44 159-202 167-210 (228)
113 1go4_E MAD1 (mitotic arrest de 22.7 1.1E+02 0.0039 26.1 5.0 34 162-195 11-44 (100)
114 1fxk_A Prefoldin; archaeal pro 22.1 2E+02 0.0068 23.4 6.4 42 161-202 63-104 (107)
115 4ath_A MITF, microphthalmia-as 21.7 2.2E+02 0.0074 23.6 6.3 38 165-206 41-78 (83)
116 2l5g_B Putative uncharacterize 21.7 2E+02 0.0068 21.1 5.3 30 175-204 7-36 (42)
117 1go4_E MAD1 (mitotic arrest de 21.7 1.5E+02 0.0051 25.4 5.5 24 161-184 17-40 (100)
118 1fxk_C Protein (prefoldin); ar 21.5 2.1E+02 0.0072 24.5 6.7 17 168-184 6-22 (133)
119 1l8d_A DNA double-strand break 20.7 1.9E+02 0.0066 23.9 6.1 37 165-201 5-41 (112)
120 2xv5_A Lamin-A/C; structural p 20.4 2.6E+02 0.009 22.4 6.5 24 161-184 3-26 (74)
121 1wle_A Seryl-tRNA synthetase; 20.4 3.9E+02 0.013 28.6 9.7 56 159-214 80-146 (501)
122 2wvr_A Geminin; DNA replicatio 20.2 2.9E+02 0.01 26.5 7.7 60 160-219 97-160 (209)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=6.6e-39 Score=279.75 Aligned_cols=95 Identities=43% Similarity=0.806 Sum_probs=91.3
Q ss_pred CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC----------
Q 010166 35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD---------- 104 (516)
Q Consensus 35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~---------- 104 (516)
+++|+|+.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||||+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCcceEecCCcccCcccccccceec
Q 010166 105 PDRWEFANEGFLRGQKHLLRSISRR 129 (516)
Q Consensus 105 ~d~weF~h~~F~RG~~~LL~~IkRr 129 (516)
++.|+|+|++|+||+++||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 4789999999999999999999996
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=283.74 Aligned_cols=100 Identities=51% Similarity=0.914 Sum_probs=95.2
Q ss_pred CCCCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC--------
Q 010166 33 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD-------- 104 (516)
Q Consensus 33 ~~~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~-------- 104 (516)
.....++||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||||+||+|||||||+||||||.
T Consensus 13 ~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~ 92 (125)
T 2ldu_A 13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLV 92 (125)
T ss_dssp SSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSS
T ss_pred cCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccc
Confidence 457789999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ---CCcceEecCCcccCcccccccceeccCC
Q 010166 105 ---PDRWEFANEGFLRGQKHLLRSISRRKPA 132 (516)
Q Consensus 105 ---~d~weF~h~~F~RG~~~LL~~IkRrk~~ 132 (516)
++.|+|+|++|+||+++||.+|+||++.
T Consensus 93 ~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 93 KPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred cCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=2.1e-32 Score=237.79 Aligned_cols=82 Identities=49% Similarity=0.922 Sum_probs=77.4
Q ss_pred CCCCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC--------
Q 010166 33 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD-------- 104 (516)
Q Consensus 33 ~~~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~-------- 104 (516)
....+|+|+.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||||+.
T Consensus 8 ~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~ 87 (102)
T 3hts_B 8 GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSML 87 (102)
T ss_dssp --CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC--------
T ss_pred CCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ---CCcceEecCC
Q 010166 105 ---PDRWEFANEG 114 (516)
Q Consensus 105 ---~d~weF~h~~ 114 (516)
+++|||+|++
T Consensus 88 ~~~~~~wEF~n~~ 100 (102)
T 3hts_B 88 SNNDSRWEFENER 100 (102)
T ss_dssp -CCSCCEEEEECC
T ss_pred CCCcCCeEecCCC
Confidence 6899999986
No 4
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=85.46 E-value=0.33 Score=42.64 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhhhhhhcccCC
Q 010166 42 SKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPK-YFKHNNFSSFVRQLNTYG 99 (516)
Q Consensus 42 ~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPk-yFkh~nfsSFvRQLN~YG 99 (516)
.=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=.+ -=..-||...-|-|..|-
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 63 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY 63 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999998999999998888743221 112346777777777763
No 5
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=84.97 E-value=0.52 Score=40.57 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=45.9
Q ss_pred CCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccC
Q 010166 37 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 37 ~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~Y 98 (516)
.-....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. |-=..-||.-.-|-|..|
T Consensus 5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyY 67 (98)
T 1fli_A 5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY 67 (98)
T ss_dssp SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 34556667888999999999999998899999999888873322 111345677777777666
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.94 E-value=5.1 Score=33.33 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
|.-|++.||.++..|.+|...++......+.+.+.|.+.......|-+.++
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887777777666555555555555555555444444333
No 7
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=84.56 E-value=0.26 Score=42.02 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=54.4
Q ss_pred CCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCc----eeeCCCcceEe
Q 010166 37 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA 111 (516)
Q Consensus 37 ~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGF----rKv~~d~weF~ 111 (516)
.-....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. |-=..-||...-|-|..|-= +||...+..|.
T Consensus 4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~ 83 (93)
T 1bc8_C 4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 83 (93)
T ss_dssp CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 33455668899999999999999998889999999888874332 22235688999999888742 24544455554
No 8
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=84.35 E-value=0.52 Score=40.80 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=54.3
Q ss_pred CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCc----eeeCCCcce
Q 010166 35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWE 109 (516)
Q Consensus 35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGF----rKv~~d~we 109 (516)
++.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||.-+-|-|..|-= +||...+..
T Consensus 5 ~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~v 84 (102)
T 2ypr_A 5 SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYA 84 (102)
T ss_dssp CSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSE
T ss_pred CCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 3344566678899999999999999988899999999888873322 11235688888888887732 355544444
Q ss_pred E
Q 010166 110 F 110 (516)
Q Consensus 110 F 110 (516)
|
T Consensus 85 Y 85 (102)
T 2ypr_A 85 Y 85 (102)
T ss_dssp E
T ss_pred E
Confidence 4
No 9
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=82.87 E-value=0.77 Score=39.99 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=55.8
Q ss_pred CCCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCc----eeeCCCcc
Q 010166 34 TNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRW 108 (516)
Q Consensus 34 ~~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGF----rKv~~d~w 108 (516)
..+.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||..+-|-|..|-= +||...+.
T Consensus 8 ~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~ 87 (106)
T 4avp_A 8 RRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERY 87 (106)
T ss_dssp ---CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSS
T ss_pred CCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeE
Confidence 34445667778899999999999999998889999999888874322 22235689999999888732 35555555
Q ss_pred eEe
Q 010166 109 EFA 111 (516)
Q Consensus 109 eF~ 111 (516)
.|.
T Consensus 88 vYk 90 (106)
T 4avp_A 88 VYK 90 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=80.66 E-value=0.66 Score=43.54 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=57.3
Q ss_pred CCCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCce----eeCCCcc
Q 010166 34 TNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGFR----KVDPDRW 108 (516)
Q Consensus 34 ~~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGFr----Kv~~d~w 108 (516)
.++......=|.++|.|+...++|+|...+.-|.+.|+++.++..=. |-=..-||.-.-|-|..|-=+ ||...+.
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 140 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 140 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence 34567788888999999999999999999999999999998884432 212245788888888887544 4444444
Q ss_pred eEe
Q 010166 109 EFA 111 (516)
Q Consensus 109 eF~ 111 (516)
.|.
T Consensus 141 vY~ 143 (171)
T 2nny_A 141 VYR 143 (171)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 11
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=79.02 E-value=0.91 Score=41.64 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred CCCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCce----eeCCCcc
Q 010166 34 TNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGFR----KVDPDRW 108 (516)
Q Consensus 34 ~~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGFr----Kv~~d~w 108 (516)
.++......=|.++|+|++..++|+|...+.-|.+.|+++.++..=. |-=..-||.-.-|-|..|-=+ ||...+.
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 115 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 115 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence 35677788889999999999999999999999999999998884432 212245788888888887433 4554454
Q ss_pred eEe
Q 010166 109 EFA 111 (516)
Q Consensus 109 eF~ 111 (516)
.|.
T Consensus 116 vY~ 118 (146)
T 1gvj_A 116 VYR 118 (146)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 12
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.77 E-value=2.7 Score=37.29 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCCchHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccC---C-ceeeCCCcce
Q 010166 36 APPPFLSKTYDMVDDLATDSIVSWSP-TSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTY---G-FRKVDPDRWE 109 (516)
Q Consensus 36 ~~p~Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~Y---G-FrKv~~d~we 109 (516)
+......=|.++|.|+.+.++|+|.. ++.-|.+.|+++.++.-=. |-=..-||.-.-|-|..| | -+||...+..
T Consensus 7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v 86 (118)
T 2dao_A 7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL 86 (118)
T ss_dssp CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence 34556677889999999999999988 4568999999888874332 222345899999999888 3 3355545544
Q ss_pred Ee
Q 010166 110 FA 111 (516)
Q Consensus 110 F~ 111 (516)
|.
T Consensus 87 Y~ 88 (118)
T 2dao_A 87 FR 88 (118)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 13
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=72.64 E-value=2.4 Score=37.01 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCCCchHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccC
Q 010166 34 TNAPPPFLSKTYDMVDDLA-TDSIVSWSP-TSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 34 ~~~~p~Fl~KLy~mv~dp~-~~~iIsWs~-~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~Y 98 (516)
.++......=|.++|.|++ ..++|+|.. +..-|.+.|+++.++.-=. |-=..-||...-|-|..|
T Consensus 5 ~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyY 72 (107)
T 1wwx_A 5 SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYY 72 (107)
T ss_dssp CCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 3556677888899999986 568999987 4679999999888874322 111346888888888887
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=71.98 E-value=17 Score=27.81 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
|-.+|+.||+++..|.+||..--.+...+++.-..|.+-+
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 5567888888888888888777666666666655555433
No 15
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=71.90 E-value=1.4 Score=40.85 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=54.6
Q ss_pred CCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCce----eeCCCcceEe
Q 010166 37 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGFR----KVDPDRWEFA 111 (516)
Q Consensus 37 ~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGFr----Kv~~d~weF~ 111 (516)
.-....=|.++|.|++..++|+|...+.-|.+.|+++.++..=. |-=..=||...-|-|..|-=+ ||...+..|.
T Consensus 5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYk 84 (157)
T 1hbx_G 5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 84 (157)
T ss_dssp CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEe
Confidence 33455667889999999999999998889999999988875433 222355899999999887422 4544555554
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=70.98 E-value=5.2 Score=28.44 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQ 186 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQ 186 (516)
.|++.|++|...+..|..||.|||...
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 478999999999999999999997643
No 17
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=70.59 E-value=1.7 Score=37.61 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=44.3
Q ss_pred chHHHHHHhhcCCC-CCCcEEEcCC-CCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccC
Q 010166 39 PFLSKTYDMVDDLA-TDSIVSWSPT-SNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 39 ~Fl~KLy~mv~dp~-~~~iIsWs~~-G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~Y 98 (516)
....=|.++|.|++ ..++|+|... ..-|.+.|+++.++.-=. +-=..-||..+-|-|..|
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY 68 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYY 68 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 34555778899998 5789999984 569999999888874322 111456899999998887
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=68.48 E-value=6.5 Score=27.50 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.|+.|-.++..|..||.|||.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4889999999999999999999974
No 19
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=70.87 E-value=1.1 Score=40.25 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCCCCcEEEcCCC-CeEEEeCCchhhh
Q 010166 42 SKTYDMVDDLATDSIVSWSPTS-NSFVVWNPPEFAR 76 (516)
Q Consensus 42 ~KLy~mv~dp~~~~iIsWs~~G-~sFvI~d~~~F~k 76 (516)
.=|.++|+|+++.++|+|...+ .-|.+.|+++.++
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VAr 44 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLAR 44 (128)
Confidence 4467889999999999998854 5899999987776
No 20
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=66.50 E-value=2.3 Score=36.44 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCCchHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhhhhhhcccCCce
Q 010166 35 NAPPPFLSKTYDMVDDLA-TDSIVSWSP-TSNSFVVWNPPEFARDLLP-KYFKHNNFSSFVRQLNTYGFR 101 (516)
Q Consensus 35 ~~~p~Fl~KLy~mv~dp~-~~~iIsWs~-~G~sFvI~d~~~F~k~VLP-kyFkh~nfsSFvRQLN~YGFr 101 (516)
++......=|.++|+||+ ..++|+|.. ++.-|.+.|+++.++.-=. |-=..-||...-|-|..|--+
T Consensus 8 ~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 8 SQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp -CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred CCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 445567778899999986 589999985 6789999999888874322 222355899999999888544
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.14 E-value=13 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQ 192 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~q 192 (516)
.|+.+++.|+.++..|..||..|+++...+...
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888877776655544433
No 22
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=65.90 E-value=12 Score=26.57 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQ 186 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQ 186 (516)
.|+++|++|-.++..|..|+.|||...
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 488999999999999999999997644
No 23
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=65.54 E-value=17 Score=35.45 Aligned_cols=75 Identities=7% Similarity=0.147 Sum_probs=32.4
Q ss_pred EecCCcccCcccccccceeccCCCCCCCCCccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 110 FANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQAS 189 (516)
Q Consensus 110 F~h~~F~RG~~~LL~~IkRrk~~~~~~~~q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~ 189 (516)
=.||.|.-.+++||..++=.-+..+ ..+ .....+.+||++.+.+
T Consensus 41 ~~~PdFf~~~~~Ll~~L~lph~~~~---------------aVS---------------------L~erQ~~~LR~r~~~L 84 (252)
T 3e98_A 41 SQHPEFFVEHDELIPELRIPHQPGD---------------AVS---------------------LVERQVRLLRERNIEM 84 (252)
T ss_dssp -----------------------------------------CH---------------------HHHHHHHHHHHHHHHH
T ss_pred HhCCHHHhhCHHHHHhCCCCCCCCC---------------ccc---------------------HHHHHHHHHHHHHHHH
Confidence 3899999999999999853221110 001 1112244677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010166 190 DSQLQTMVQRLQGMEQRHQQMMAFLAKAVQS 220 (516)
Q Consensus 190 e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~ 220 (516)
+.+|..|.+.-+.-+.-.+++..+..+++.-
T Consensus 85 e~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a 115 (252)
T 3e98_A 85 RHRLSQLMDVARENDRLFDKTRRLVLDLLDA 115 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888877777777777777776653
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.53 E-value=41 Score=29.39 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
...|+..|++..+.|..||..++.+...++..|..+..|...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999888888888888887654
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.30 E-value=13 Score=28.63 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQ 192 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~q 192 (516)
.|+.+++.|..++..|..||..|+.+...+...
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888877777665554443
No 26
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=63.82 E-value=2.7 Score=35.46 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHhhcCCCCCCcEEEcC-CCCeEEEe--CCchhhhhhccc--ccCCCChhhhhhhcccC
Q 010166 42 SKTYDMVDDLATDSIVSWSP-TSNSFVVW--NPPEFARDLLPK--YFKHNNFSSFVRQLNTY 98 (516)
Q Consensus 42 ~KLy~mv~dp~~~~iIsWs~-~G~sFvI~--d~~~F~k~VLPk--yFkh~nfsSFvRQLN~Y 98 (516)
.=|.++|+|+++.++|+|.. +..-|.+. |+++.++.-=.+ -=+.=||...-|-|..|
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyY 67 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY 67 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHH
Confidence 44678899999999999986 44678875 677777743221 11256888888888887
No 27
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.49 E-value=69 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 205 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEq 205 (516)
.++.++..|+.+-..|++||..|..+...++..|..+......+++
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999999998877666553
No 28
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.32 E-value=11 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.+++|-..+..|..||.|||.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3789999999999999999999965
No 29
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.17 E-value=12 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.++.|-..+..|..||.|||.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4789999999999999999999975
No 30
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.12 E-value=19 Score=30.42 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.+...|..++..|+.|+..|+++...+...+..+.++++.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777766666667766666554
No 31
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=60.00 E-value=12 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.|++|-..+..|..|+.||+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4789999999999999999999964
No 32
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.79 E-value=27 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
|...+.+||+|+-.|...-+ .++.-+..|...+.++|
T Consensus 8 lrkkiarlkkdnlqlerdeq-------nlekiianlrdeiarle 44 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQ-------NLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHh-------hHHHHHHHHHHHHHHHH
Confidence 56778888888765554433 33444455544444443
No 33
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=59.61 E-value=12 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.++.|-..+..|..||.|||.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4789999999999999999999975
No 34
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=59.30 E-value=12 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.|++|-..+..|..||.||+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4789999999999999999999964
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.32 E-value=69 Score=27.96 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 172 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAK 216 (516)
Q Consensus 172 k~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak 216 (516)
.+.|..||..||+....+...|..|.+....+|.......+.|+.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 556778888888888888888888888888777777766666654
No 36
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.25 E-value=13 Score=26.13 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.|+.|-.+++.|..|+.+||.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4789999999999999999999964
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.81 E-value=81 Score=26.15 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
|+..|..+=.....|..|+..||++...+..+.+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666665555555
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.11 E-value=20 Score=27.29 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQAS 189 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~ 189 (516)
.+++.||+++.-|.+++..|+++.+.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667666665555555554444433
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.04 E-value=39 Score=29.63 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 215 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLa 215 (516)
...|+..|++..+.|..||..++.+...++..|..+..|....-..-+..+.-|-
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999888888888888888888776543333333333333
No 40
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=55.83 E-value=15 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|++.++.|-..+..|..||.|||.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4789999999999999999999975
No 41
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.60 E-value=61 Score=26.77 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 177 QELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 177 qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
+.|..|+++...+.-++..+...|..+.++|+.+..-|
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555565555444
No 42
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.88 E-value=17 Score=29.86 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
.|-.+|+.|-.++.+|..|+..+++-...++.++..|.+.|
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777666665555555555554443
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.26 E-value=23 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQq 185 (516)
|..|++.||...+.|..++..|+.+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666554
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.71 E-value=56 Score=29.28 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQ 184 (516)
++.|..+...+..|+..|+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~ 96 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKH 96 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 45
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=51.29 E-value=35 Score=28.22 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
|....+.|.+||.+||-+.+....+|..|.+|.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555543
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.92 E-value=22 Score=29.75 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
+..+++.|..++..|..+|..|+++...
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444333
No 47
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.89 E-value=21 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.+++.+++|-..+..|..||.||+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3788999999999999999999964
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.61 E-value=83 Score=33.10 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
+++++..++.+.+.+..++.+++++.+....+++.+.+++..+|++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 3444555555555555555555555544455555444444444443
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.07 E-value=14 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDS 191 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~ 191 (516)
.|+.+++.|..++..|..|+..|+.+...+..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888877766544433
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.91 E-value=99 Score=32.52 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.+++++.+..+..+.+.+++...++
T Consensus 467 ~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4666666666666666666644433
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.63 E-value=34 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~ 188 (516)
|+.+++.|+.++..|..++..|+.+.+.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666554433
No 52
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=46.58 E-value=97 Score=30.46 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ 231 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~ 231 (516)
+..|++.++.+..++.-|-=+...+..+|..+-.+++.+..+++.++.-||++=|+-.||-.-|...
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V 217 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQI 217 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3468888888888877766666788889999999999999999999999999999888887776544
No 53
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.82 E-value=28 Score=23.68 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
|..|+..||++...|.-|+..|+|
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 54
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.23 E-value=18 Score=28.30 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQ 185 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQq 185 (516)
.|+.+++.|+.++..|..|+..|+++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888764
No 55
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.53 E-value=75 Score=30.20 Aligned_cols=48 Identities=2% Similarity=0.237 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 010166 181 RLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFV 228 (516)
Q Consensus 181 rLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv 228 (516)
.|.++.+.-+.++..|.++|+..+..-...-.-+++...+-++.--++
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 333333333444444444444443333223333334333333333333
No 56
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.51 E-value=1.1e+02 Score=26.52 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMA 212 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmms 212 (516)
+..++...+.+...|.+|+..|+...+.++..=.---.+|+..|--+|.+..
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444444444455555555555443
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.38 E-value=1.5e+02 Score=26.37 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
+++-.++++...|.+++..+.++...+.+++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333333
No 58
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.15 E-value=36 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQEL 179 (516)
Q Consensus 163 eEve~LKrDk~~L~qEL 179 (516)
.+|+.||+++..|.+++
T Consensus 14 qDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44555555555444443
No 59
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.90 E-value=45 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
+-|..|+.+...|..|+..|+++++.+..+|+.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777777777877777777666654
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.46 E-value=29 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
|..|+.+...|..|+..|+++...++.+|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666555555543
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.68 E-value=71 Score=26.52 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 170 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 170 rDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
+-++.+..||.+.|--+..++.+|++-..|.+.++
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888887777777665543
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.00 E-value=51 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 171 DKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 171 Dk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
..+.|-..|.+..++...++.++..|.+|+..
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=38.89 E-value=1.6e+02 Score=25.71 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQ 209 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqq 209 (516)
|..++..|+..+..|..-|..|-|....++..-.....-|..+|.|..+
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443
No 64
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.59 E-value=46 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
.|+.++..|..+.+.|.+|+.+++++...+...+++|
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777777777777666666666543
No 65
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.46 E-value=37 Score=27.31 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQ 194 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq 194 (516)
.|+.+|..|...+..|..|...|+++...+..++.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665555544443
No 66
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.99 E-value=26 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQ 186 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQ 186 (516)
+..+++.|..++..|..+|..|+++.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554433
No 67
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.99 E-value=98 Score=32.09 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 170 RDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 210 (516)
Q Consensus 170 rDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqm 210 (516)
.+...|.+|+..|.++.+.++.++..+.+++...|..-+++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444455555555555544433333
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.41 E-value=2e+02 Score=27.17 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 172 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLA 215 (516)
Q Consensus 172 k~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFLa 215 (516)
.+.|..|+..|+.....+..+|..|.+....+|.......+.|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 44455555555555555555555555555555555555444443
No 69
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.09 E-value=1.4e+02 Score=22.24 Aligned_cols=42 Identities=36% Similarity=0.480 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQ 205 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEq 205 (516)
+++.+++|......|..-+.+|--+....+ ..|.+|+..+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq---~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQ---MKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 677888888888888877777765555544 445667776665
No 70
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.79 E-value=1.2e+02 Score=29.20 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
++.++..|+.....+..++..++.++...+..+..+..|+...+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555555544443
No 71
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.07 E-value=83 Score=21.41 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrL 182 (516)
|+..||.+...|..|+..|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.03 E-value=1.1e+02 Score=31.66 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 175 LMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 175 L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
|.+|+..|+++-...+..+..+..+++.++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 73
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.75 E-value=50 Score=26.87 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQ 194 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq 194 (516)
-|..|+.+...|..|...|+.++..+..+|.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777777777777777777666655554
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.65 E-value=1.9e+02 Score=23.52 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQ 208 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQq 208 (516)
.+++.|++|......|..-+.||--+....+ +.|.+|+..+|.+-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 4788888888888888877777765555543 445667777666433
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.23 E-value=3.2e+02 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010166 167 RLKRDKNVLMQELVRLRQQQQA 188 (516)
Q Consensus 167 ~LKrDk~~L~qELvrLRQqQq~ 188 (516)
.|+..++.|..|+..+|.+.+.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 76
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.73 E-value=2.9e+02 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRL 200 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RL 200 (516)
..+..|+.+...|..++..|......-...++.+...+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555544333333333333333
No 77
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.52 E-value=1.5e+02 Score=21.70 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 010166 163 EEVERLK 169 (516)
Q Consensus 163 eEve~LK 169 (516)
.|+..||
T Consensus 7 selqalk 13 (48)
T 1g6u_A 7 SELQALK 13 (48)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 78
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=32.13 E-value=1.2e+02 Score=27.85 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELV 180 (516)
Q Consensus 163 eEve~LKrDk~~L~qELv 180 (516)
.++++|+.++..++..|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~ 22 (155)
T 2aze_A 5 QECQNLEVERQRRLERIK 22 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666665544443
No 79
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.52 E-value=34 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQQQQASDSQLQTM 196 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQqQq~~e~qLq~L 196 (516)
+++.++...+++..|+.|...++.++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 56778888888999999888888887654
No 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.98 E-value=1.8e+02 Score=34.17 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 177 QELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 177 qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
.++..|.++...++.+++.+.+....+|++.+++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.68 E-value=2.2e+02 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..|..|+..|+++.+....+...++++++.+..+-+..++-|
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L 1028 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333333
No 82
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.64 E-value=1.2e+02 Score=23.43 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQL 193 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qL 193 (516)
+.++.+||.-+..|...+..|..+-...++++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEi 41 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEI 41 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766654444433333
No 83
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.39 E-value=2.8e+02 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
+..|+.|+++.+.|..|+.+++.+.+.. +..|..|+..+|
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql~~~i~~Le 53 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRV---VLQLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4568899999999999999998776655 444555555444
No 84
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.00 E-value=75 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010166 178 ELVRLRQQQQASDSQLQTMVQ 198 (516)
Q Consensus 178 ELvrLRQqQq~~e~qLq~L~~ 198 (516)
|-.+|.+.....+.++..|.+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444443443444444433
No 85
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.30 E-value=41 Score=25.57 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|+.++..|..++..|..|+..|++
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777766666666643
No 86
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.86 E-value=45 Score=21.96 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 166 ERLKRDKNVLMQELVRL 182 (516)
Q Consensus 166 e~LKrDk~~L~qELvrL 182 (516)
.+||..+..|.||+..|
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 34555555555554444
No 87
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.49 E-value=38 Score=22.14 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrL 182 (516)
.|.+|+-+||-+...|..|+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 35667777777777666666554
No 88
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.43 E-value=3.2e+02 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 172 KNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 172 k~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
...|..||.+++............+.+|+..+|+.
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 89
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=28.22 E-value=36 Score=32.16 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCchHH-HHHHhhcCCCCCCcEEEcCCCCeEEE-eCCchhhhhh-ccccc-CCCChhhhhh-----hcccCCc
Q 010166 37 PPPFLS-KTYDMVDDLATDSIVSWSPTSNSFVV-WNPPEFARDL-LPKYF-KHNNFSSFVR-----QLNTYGF 100 (516)
Q Consensus 37 ~p~Fl~-KLy~mv~dp~~~~iIsWs~~G~sFvI-~d~~~F~k~V-LPkyF-kh~nfsSFvR-----QLN~YGF 100 (516)
...||. .+|.++=.-.- +...|+++++.|+| .|..-|...| ||+.. ..-+|+.|+. -|.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 346884 48888877554 45889999999999 8888777666 78777 6779999974 4888899
No 90
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.60 E-value=3.6e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 180 VRLRQQQQASDSQLQTMVQRLQGMEQRHQQMM 211 (516)
Q Consensus 180 vrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmm 211 (516)
..++.+...+..++..+.+++..++.-.+.++
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554444433
No 91
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.46 E-value=78 Score=28.00 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010166 190 DSQLQTM 196 (516)
Q Consensus 190 e~qLq~L 196 (516)
.++|++.
T Consensus 84 nq~Lq~a 90 (121)
T 3mq7_A 84 NHKLQDA 90 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 92
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.46 E-value=1.6e+02 Score=32.15 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 167 RLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 167 ~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.|++..+.|..+|....++.+.++..|.++...||++|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555555666666666666666555
No 93
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.24 E-value=1.7e+02 Score=30.47 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRL 182 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrL 182 (516)
.|++|+.+|++.++.|.+++.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555554444444
No 94
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.87 E-value=1.9e+02 Score=23.96 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.++-+..|+..+..+..++.+|..+...++.++..+...|+.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777877777777777777777777766666654
No 95
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=26.84 E-value=2.4e+02 Score=25.53 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 164 EVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 164 Eve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.|+.|++.+..-..||-+||-+...++..+.....-|.+
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 356666666666666666666665555555554444443
No 96
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.74 E-value=82 Score=27.72 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=2.6
Q ss_pred hHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKN 173 (516)
Q Consensus 161 LeeEve~LKrDk~ 173 (516)
|..+++.||+|..
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 5566777777665
No 97
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.67 E-value=2.7e+02 Score=22.88 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
++.+...|+.....|.+.|..-+.+|......++.+.+.|.+
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555566555555443
No 98
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.15 E-value=2.2e+02 Score=27.30 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.+++.|+.+...|..|+..++.+...+...+.++.+|..+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777665
No 99
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.09 E-value=3.1e+02 Score=26.18 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
.|..|++.+++.+..|..++..+..+....+..+..+..++...+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777776666666665555555555554433
No 100
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.66 E-value=1.6e+02 Score=25.26 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
.+++-++-|++..+.|...+..+.++...+..++..+.+.|+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555555554444444444444444443
No 101
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.55 E-value=2.6e+02 Score=23.24 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGM 203 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~m 203 (516)
..|..||...+++...++.+|....++|..+
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445544444444444444444444443
No 102
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.35 E-value=1.8e+02 Score=21.94 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
+..++..|...|..|..-|.+-|++...+..+|..
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555565555555555544444433
No 103
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.00 E-value=1.9e+02 Score=22.38 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=7.6
Q ss_pred ChHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVL 175 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L 175 (516)
.|.+++..|++|+..|
T Consensus 14 aLkDqV~eL~qe~k~m 29 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKM 29 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544433
No 104
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.79 E-value=2.8e+02 Score=22.42 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 163 EEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 163 eEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
.+...|+.....|.+.|..-+.+|......++.+.+.|.
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444445555555555444443
No 105
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.15 E-value=2.1e+02 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 166 ERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 166 e~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
..|+.+...|.+++..|+++.+.+...+..+.++|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444334444443333
No 106
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.99 E-value=41 Score=26.59 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010166 174 VLMQELVRLRQQQQASDSQ 192 (516)
Q Consensus 174 ~L~qELvrLRQqQq~~e~q 192 (516)
.|..++.+..+.|..++++
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~ 34 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQE 34 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 107
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.57 E-value=3.1e+02 Score=23.74 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 173 NVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 173 ~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..|.+||...+++...+..++..|...+..+|+.-.-..+-|
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666767777777777778888888888776544444433
No 108
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=23.56 E-value=4e+02 Score=29.22 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=33.9
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 156 VGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMV 197 (516)
Q Consensus 156 ~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~ 197 (516)
..+..++..++.|+..-+.+.+|+..|.+.|.....+++.+.
T Consensus 12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~ 53 (585)
T 1y1u_A 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESL 53 (585)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344568889999999999999999999998888777766654
No 109
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.53 E-value=2.5e+02 Score=21.43 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
.++|-++-+.|..|-..||++.+...++|..|+..-..|..-
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 467888888888888888888888888888888776666543
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.53 E-value=2.8e+02 Score=22.11 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQ 209 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqrQqq 209 (516)
++.+++........+..||..|....+.++..+....+||.....+...
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 111
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.46 E-value=2e+02 Score=23.97 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 160 GLEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 160 ~LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
.|+.++..|+.+...|.+|+..++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888877777777764
No 112
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.22 E-value=2.9e+02 Score=26.79 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=30.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.-+...+..+|.++..|.+.|.+.+.+.+++..+|....+.+..
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888777777776666665554443
No 113
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.72 E-value=1.1e+02 Score=26.12 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 162 EEEVERLKRDKNVLMQELVRLRQQQQASDSQLQT 195 (516)
Q Consensus 162 eeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~ 195 (516)
.+++..|++....|..|-.+|+++...++.+|..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888888887777777754
No 114
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.05 E-value=2e+02 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~ 202 (516)
.++-+..|...++.+..++.+|..+...++.++..+...|+.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888877777777777777776654
No 115
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.73 E-value=2.2e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQR 206 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq~mEqr 206 (516)
|..|+.+++.+.+|..++ ..++..-..|.-|+|.+|..
T Consensus 41 I~~Lq~e~~r~~e~e~r~----k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 41 IRKLQREQQRAKDLENRQ----KKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHH
Confidence 445555555555444443 23344445555566655543
No 116
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.66 E-value=2e+02 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 175 LMQELVRLRQQQQASDSQLQTMVQRLQGME 204 (516)
Q Consensus 175 L~qELvrLRQqQq~~e~qLq~L~~RLq~mE 204 (516)
|.|-+.++-.+...++.+|..+..|+..+|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555544
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.66 E-value=1.5e+02 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
+..+|+.|.+++..|.+++..|.-
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555443
No 118
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.51 E-value=2.1e+02 Score=24.46 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010166 168 LKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 168 LKrDk~~L~qELvrLRQ 184 (516)
|...++.+.+++..+.+
T Consensus 6 l~~~~q~l~~~~~~l~~ 22 (133)
T 1fxk_C 6 IVAQLNIYQSQVELIQQ 22 (133)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 119
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.71 E-value=1.9e+02 Score=23.90 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 165 VERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQ 201 (516)
Q Consensus 165 ve~LKrDk~~L~qELvrLRQqQq~~e~qLq~L~~RLq 201 (516)
+..++.+...+..++..|+..+..+..++..+...+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555544443
No 120
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.45 E-value=2.6e+02 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 161 LEEEVERLKRDKNVLMQELVRLRQ 184 (516)
Q Consensus 161 LeeEve~LKrDk~~L~qELvrLRQ 184 (516)
|..|.+.++.....|..||.++|+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~ 26 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRA 26 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444
No 121
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.38 E-value=3.9e+02 Score=28.58 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166 159 FGLEEEVERLKRDKNVLMQELVRLRQQQ-----------QASDSQLQTMVQRLQGMEQRHQQMMAFL 214 (516)
Q Consensus 159 ~~LeeEve~LKrDk~~L~qELvrLRQqQ-----------q~~e~qLq~L~~RLq~mEqrQqqmmsFL 214 (516)
..+..+++.|+.+++.+-.+|..++... +.+..++..+.+++..+|.....+-.-|
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888877665432 2445566666666666666655554433
No 122
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.23 E-value=2.9e+02 Score=26.48 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=25.4
Q ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q 010166 160 GLEEEVERLKR-DKNVLMQELVRLRQQQQASDSQLQTMVQRL---QGMEQRHQQMMAFLAKAVQ 219 (516)
Q Consensus 160 ~LeeEve~LKr-Dk~~L~qELvrLRQqQq~~e~qLq~L~~RL---q~mEqrQqqmmsFLak~lQ 219 (516)
.+++++..=+| -...-+.|-..|.++....+.++..|.+.+ +.+-.+=|.|.+.|.+++.
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555543222 122233444455554444444444444333 3333333444444444443
Done!