BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010167
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 56/249 (22%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G DL+ N GDSRA+L +E S A+ L+ H +NE E RL EHP +
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNEREVERLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG-VGY-----LKKK-------NLNDALMGILRVRNLISPPY 407
+ ++ G L RAFG V + L+K+ LND N +PPY
Sbjct: 264 KSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPY 323
Query: 408 VSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAK------- 460
++ P + HR+ D F+++A+DGL++ ++ V +VG Y+ P
Sbjct: 324 LTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVT 383
Query: 461 ------FLLE----------------HLVERAAECAGFS------LEELMNVPAGRRRKY 492
L E HL+ A F L +++++P R Y
Sbjct: 384 LGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMY 443
Query: 493 HDDVTVIVI 501
DD+T+IV+
Sbjct: 444 RDDITIIVV 452
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 56/249 (22%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G DL+ N GDSRA+L +E S A+ L+ H +NE E RL EHP +
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNERELQRLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG-VGY-----LKKK-------NLNDALMGILRVRNLISPPY 407
+ ++ G L RAFG V + L+K+ LND N +PPY
Sbjct: 264 KSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPY 323
Query: 408 VSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAK------- 460
++ P + HR+ D F+++A+DGL++ ++ V +VG Y+ P
Sbjct: 324 LTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVT 383
Query: 461 ------FLLE----------------HLVERAAECAGFS------LEELMNVPAGRRRKY 492
L E HL+ A F L +++++P R Y
Sbjct: 384 LGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMY 443
Query: 493 HDDVTVIVI 501
DD+T+IV+
Sbjct: 444 RDDITIIVV 452
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 27/146 (18%)
Query: 302 HGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDP 361
HG DLY N GDSR V+ + KA++++ H E+ E R+
Sbjct: 140 HGKDLYVANAGDSRCVVC-----------RNGKALEMSFDHKPEDTVEYQRI---EKAGG 185
Query: 362 MPILAGKVKGKLKVTRAFG-VGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRIT 420
L G+V G L ++RA G GY K+L +S P + +
Sbjct: 186 RVTLDGRVNGGLNLSRAIGDHGYKMNKSLP------------AEEQMISALPDIEKITVG 233
Query: 421 KSDHFVIVASDGLFDFFTNEETVDLV 446
D F+++A DG+++F T+E+ V V
Sbjct: 234 PEDEFMVLACDGIWNFMTSEQVVQFV 259
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
++ N GDSRAVL + A+ L+ H + EDE R+ + +
Sbjct: 139 IFVANCGDSRAVLC-----------RGKTALPLSVDHKPDREDEAARIEAAG-GKVIQWN 186
Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
+V G L ++R+ G YLK P + P + + K D
Sbjct: 187 GARVFGVLAMSRSIGDRYLK--------------------PSIIPDPEVTAVKRVKEDDC 226
Query: 426 VIVASDGLFDFFTNEETVDLVGCYIV----SNPSGDPAKFLLEHLVERAAECAGFSLEEL 481
+I+ASDG++D T+EE ++ I+ N A L + + + A S E
Sbjct: 227 LILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEY 286
Query: 482 MNVPAGRRRKYHDDVTVIVIILGTNKR 508
++ A +R D+++V+V+ L ++
Sbjct: 287 LSKLA-IQRGSKDNISVVVVDLKPRRK 312
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
++ N GDSRAVL + A+ L+ H + EDE R+ + +
Sbjct: 151 IFVANCGDSRAVLC-----------RGKTALPLSVDHKPDREDEAARIEAAG-GKVIQWN 198
Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
+V G L ++R+ G YLK P + P + + K D
Sbjct: 199 GARVFGVLAMSRSIGDRYLK--------------------PSIIPDPEVTAVKRVKEDDC 238
Query: 426 VIVASDGLFDFFTNEETVDLVGCYIV----SNPSGDPAKFLLEHLVERAAECAGFSLEEL 481
+I+ASDG++D T+EE ++ I+ N A L + + + A S E
Sbjct: 239 LILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPAAMSAAEY 298
Query: 482 MNVPAGRRRKYHDDVTVIVIILGTNKR 508
++ A +R D+++V+V+ L ++
Sbjct: 299 LSKLA-IQRGSKDNISVVVVDLKPRRK 324
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
++ N GDSRAVL + A+ L+ H + EDE R+ + +
Sbjct: 136 IFVANCGDSRAVLC-----------RGKTALPLSVDHKPDREDEAARIEAAG-GKVIQWN 183
Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
+V G L ++R+ G YLK P + P + + K D
Sbjct: 184 GARVFGVLAMSRSIGDRYLK--------------------PSIIPDPEVTAVKRVKEDDC 223
Query: 426 VIVASDGLFDFFTNEETVDLVGCYIV----SNPSGDPAKFLLEHLVERAAECAGFSLEEL 481
+I+ASDG++D T+EE ++ I+ N A L + + + A S E
Sbjct: 224 LILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEY 283
Query: 482 MNVPAGRRRKYHDDVTVIVIILGTNKR 508
++ A +R D+++V+V+ L ++
Sbjct: 284 LSKLA-IQRGSKDNISVVVVDLKPRRK 309
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 158 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 204
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 205 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 244
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 245 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 299
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 300 ALQKGSKDNISIIVIDLKAQRK 321
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 169 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 215
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 216 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 255
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 256 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 310
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 311 ALQKGSKDNISIIVIDLKAQRK 332
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 175 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 221
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 222 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 261
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 262 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 316
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 317 ALQKGSKDNISIIVIDLKAQRK 338
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 172 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 218
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 219 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 258
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 259 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 313
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 314 ALQKGSKDNISIIVIDLKAQRK 335
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 32/140 (22%)
Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
++ N GDSRAVL + + L+ H + +DE R+ + +
Sbjct: 145 IFVANCGDSRAVLC-----------RGKTPLALSVDHKPDRDDEAARIEAAG-GKVIRWN 192
Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
+V G L ++R+ G YLK P V P + R K D
Sbjct: 193 GARVFGVLAMSRSIGDRYLK--------------------PSVIPDPEVTSVRRVKEDDC 232
Query: 426 VIVASDGLFDFFTNEETVDL 445
+I+ASDGL+D TNEE DL
Sbjct: 233 LILASDGLWDVMTNEEVCDL 252
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 173 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 219
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 220 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 259
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 260 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 314
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 315 ALQKGSKDNISIIVIDLKAQRK 336
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG-K 368
N GDSRAVL E A+ L+ H + EDE R+ E+ + G +
Sbjct: 182 NCGDSRAVLFRGKE-----------AMPLSVDHKPDREDEYARI--ENAGGKVIQWQGAR 228
Query: 369 VKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIV 428
V G L ++R+ G YLK PYV P + ++ D +I+
Sbjct: 229 VFGVLAMSRSIGDRYLK--------------------PYVIPEPEVTFMPRSREDECLIL 268
Query: 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEH--LVERAAECAGFSLEELMNVPA 486
ASDGL+D N+E ++ I+ + A L E ++ A + A L L
Sbjct: 269 ASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSML----- 323
Query: 487 GRRRKYHDDVTVIVIILGTNKR 508
++ D++++IVI L ++
Sbjct: 324 ALQKGSKDNISIIVIDLKAQRK 345
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Query: 307 YTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILA 366
Y +N GDSR +L + K T+ H N E+ R+ + ++
Sbjct: 140 YFINCGDSRGLLC-----------RNRKVHFFTQDHKPSNPLEKERIQNAGGS----VMI 184
Query: 367 GKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISP-PYVSTRPSLNVHRITKSDHF 425
+V G L V+RA G K + G L+SP P V ++ R + D F
Sbjct: 185 QRVNGSLAVSRALGDFDYK------CVHGKGPTEQLVSPEPEVH-----DIERSEEDDQF 233
Query: 426 VIVASDGLFDFFTNEETVDLV 446
+I+A DG++D NEE D V
Sbjct: 234 IILACDGIWDVMGNEELCDFV 254
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Query: 307 YTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILA 366
Y +N GDSR +L + K T+ H N E+ R+ + ++
Sbjct: 140 YFINCGDSRGLLC-----------RNRKVHFFTQDHKPSNPLEKERIQNAGGS----VMI 184
Query: 367 GKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISP-PYVSTRPSLNVHRITKSDHF 425
+V G L V+RA G K + G L+SP P V ++ R + D F
Sbjct: 185 QRVNGSLAVSRALGDFDYK------CVHGKGPTEQLVSPEPEVH-----DIERSEEDDQF 233
Query: 426 VIVASDGLFDFFTNEETVDLV 446
+I+A DG++D NEE D V
Sbjct: 234 IILACDGIWDVMGNEELCDFV 254
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 306 LYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPIL 365
+Y +N GDSRAVL ++ + T+ H N E+ R+ + ++
Sbjct: 146 IYFINCGDSRAVL-----------YRNGQVCFSTQDHKPCNPREKERI----QNAGGSVM 190
Query: 366 AGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHF 425
+V G L V+RA G K + G L+SP P + + D F
Sbjct: 191 IQRVNGSLAVSRALGDYDYK------CVDGKGPTEQLVSP-----EPEVYEILRAEEDEF 239
Query: 426 VIVASDGLFDFFTNEETVDLV 446
+I+A DG++D +NEE + V
Sbjct: 240 IILAXDGIWDVMSNEELCEYV 260
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 178 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 224
Query: 364 ILAGKVK------GKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVH 417
+ AGK+K G+ + TR G +K + L+ + + +I+ P + L+
Sbjct: 225 LDAGKIKQVGIICGQ-ESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLD-- 281
Query: 418 RITKSDHFVIVASDGLF 434
F+++ S+GL+
Sbjct: 282 ---GVTGFLVLMSEGLY 295
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 159 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 205
Query: 364 ILAGKVK------GKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVH 417
+ AGK+K G+ + TR G +K + L+ + + +I+ P + L+
Sbjct: 206 LDAGKIKQVGIICGQ-ESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLD-- 262
Query: 418 RITKSDHFVIVASDGLF 434
F+++ S+GL+
Sbjct: 263 ---GVTGFLVLMSEGLY 276
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 176 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 222
Query: 364 ILAGKVK------GKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVH 417
+ AGK+K G+ + TR G +K + L+ + + +I+ P + L+
Sbjct: 223 LDAGKIKQVGIICGQ-ESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLD-- 279
Query: 418 RITKSDHFVIVASDGLF 434
F+++ S+GL+
Sbjct: 280 ---GVTGFLVLMSEGLY 293
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G +L ++GDSRA+L ++ K ++LT HT E +DE+ R+
Sbjct: 113 GIELVVASVGDSRAILC-----------RKGKPMKLTIDHTPERKDEKERIKKCGGFVAW 161
Query: 363 PILAG-KVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITK 421
L V G+L +TR+ G +L+ L+ +I+ P + +H
Sbjct: 162 NSLGQPHVNGRLAMTRSIG-------DLD------LKTSGVIAEPETK---RIKLHH--A 203
Query: 422 SDHFVIVASDGLFDFFTNEETVDLV 446
D F+++ +DG+ ++E D V
Sbjct: 204 DDSFLVLTTDGINFMVNSQEICDFV 228
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G +L ++GDSRA+L ++ K ++LT HT E +DE+ R+
Sbjct: 227 GIELVVASVGDSRAILC-----------RKGKPMKLTIDHTPERKDEKERIKKCGGFVAW 275
Query: 363 PILAG-KVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITK 421
L V G+L +TR+ G +L+ L+ +I+ P + +H
Sbjct: 276 NSLGQPHVNGRLAMTRSIG-------DLD------LKTSGVIAEPETK---RIKLHH--A 317
Query: 422 SDHFVIVASDGLFDFFTNEETVDLV 446
D F+++ +DG+ ++E D V
Sbjct: 318 DDSFLVLTTDGINFMVNSQEICDFV 342
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 367 GKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRNLISPPYVSTRPSLNVHRITKSDHFV 426
G+ +L+ +RAFG LK L S +P + V R+T
Sbjct: 221 GEQPXQLQYSRAFGGKDLKXYGL-------------------SNQPDVRVVRVTPQHRVX 261
Query: 427 IVASDGLFDFFTNEETVDL 445
I+A+DGL+D + + V++
Sbjct: 262 ILATDGLWDVXSAAQAVEI 280
>pdb|2YPV|L Chain L, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 139 RSEGILNGMEVQVAGGAAGEDRVQAVCS---EEHGLLFCAIYDGF 180
R+ +++G+ + +GG +G+D + S E+ G+ +C YD F
Sbjct: 50 RANRLVDGVPSRFSGGGSGQDYSLTISSLEFEDIGIYYCLQYDEF 94
>pdb|3E7E|A Chain A, Structure And Substrate Recruitment Of The Human Spindle
Checkpoint Kinase Bub
Length = 365
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 184 DAADFLAGT-------------LYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYI 228
DA +F+ G L + V Y N FEW+ K+ A + + + G L Y+
Sbjct: 12 DAPNFIVGNPWDDKLIFKLLSGLSKPVSSYPNTFEWQCKLPAIKPKTEFQLGSKLVYV 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,838,302
Number of Sequences: 62578
Number of extensions: 527241
Number of successful extensions: 1014
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 37
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)