BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010168
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 127 bits (320), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/186 (40%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
+EL R+ AA +G+ ++K LI GAD N +D DGR+PLH A G+++I LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N KD G TPL A K GH + LL+ +GA +N
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN------------------------ 97
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
++D D RTPLH AA EG + KLL+ GA V T D G TPLD R GN+
Sbjct: 98 -------AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
++KLLE
Sbjct: 151 IVKLLE 156
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 258
+G K + LL K +++ K H E H ++ +L LI G
Sbjct: 47 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG-----------HKEIVKL--LISKG 93
Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 318
AD N D DGR+PLH A G+++I LI KG D+N D G TPL A + G++ +
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 319 LLVKEGASL 327
LL K+G L
Sbjct: 154 LLEKQGGWL 162
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
+ + G L A G+ D +K ++ NG D ++ D D RTPLH AA EG + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A V KD G TPL G+K ++KLL
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 125 bits (315), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
+EL R+ AA +G+ ++K L+ GADPN +D DGR+PLH A G+++I L+ KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D N KD G TPL A + GH + LL L
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
S G DP+++D D RTPLH AA G + KLLL GA T D G TPLD R GN+
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
++KLLE
Sbjct: 151 IVKLLE 156
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G +K L+ GADPN D DGR+PLH A G+++I L+ KG D N D G
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASL 327
TPL A + G++ + LL K+G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
+ + G L A G+ D +K +L NG DP++ D D RTPLH AA G + KLLL G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A KD G TPL G+K ++KLL
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 123 bits (309), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
+EL R+ AA +G+ ++K LI GAD N +D DGR+PLH A G++++ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N KD G TPL A + GH V LL+ +GA +N
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN------------------------ 97
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
++D D RTPLH AA G + KLL+ GA V T D G TPLD R GN+
Sbjct: 98 -------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
++KLLE
Sbjct: 151 VVKLLE 156
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
++ AA +G +K LI GAD N D DGR+PLH A G++++ LI KG D+N D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASL 327
G TPL A + G++ V LL K+G L
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
+ + G L A G+ D +K ++ NG D ++ D D RTPLH AA G + KLL+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A V KD G TPL G+K ++KLL
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 119 bits (299), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
+EL R+ AA +G+ ++K L+ GAD N +D DG++PLHLA G++++ L+ +G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D N KD G TPL A + GH V LL L
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
S G DP+++D D +TPLH+AA G + KLLL GA T D G TPLD R GN+
Sbjct: 91 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 413 LIKLLE 418
++KLLE
Sbjct: 151 VVKLLE 156
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 51/86 (59%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G +K L+ GADPN D DG++PLHLA G++++ L+ +G D N D G
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASL 327
TPL A + G++ V LL K+G L
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 329 VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388
+ + G L A G+ D +K +L NG D ++ D D +TPLH+AA G + KLLL G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A KD G TPL G+K ++KLL
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 101 bits (252), Expect = 9e-22, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GAD N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
+N KDK G TPL A + GH + +L+K GA +N
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
++D D TPLH+AA EG + ++LL+AGA V +D++G TP D GN+++
Sbjct: 96 ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 414 IKLLEDA 420
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 99.8 bits (247), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GAD N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
+N KDK G TPL A + GH + +L+K GA +N
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------- 95
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
++D D TPLH+AA EG + ++LL+AGA V +D++G TP D G++++
Sbjct: 96 ------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 414 IKLLEDA 420
++L+ A
Sbjct: 150 AEVLQKA 156
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 98.2 bits (243), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N KDK G TPL A + GH + +L+K GA +N
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
++D D TPLH+AA EG + ++LL+AGA V +D++G T D GN++
Sbjct: 108 -------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 96.7 bits (239), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 327 LNVDDAG--SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
+N D + L A G + +K +L G D +++D + RTPLH+AA G + KLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 385 LEAGA 389
LEAGA
Sbjct: 121 LEAGA 125
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 53/84 (63%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G L +K L+ AGAD N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA 325
TPL A + GH V LL++ GA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
A G + +K +L G D +++D + RTPLH+AA G + KLLLEAGA V KD+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 399 NTPLDEGRMCGNKNLIKLLEDA 420
TPL G+ ++KLL +A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA 90
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 92.8 bits (229), Expect = 4e-19, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N TD+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D +G TPL A GH + +L+K GA +N
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
++DY+ TPLH+AA +G + ++LL+ GA V +D++G T D GN++
Sbjct: 108 -------AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G L ++ L++ GAD N DY+G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 91.7 bits (226), Expect = 8e-19, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N TD DG +PLHLA S G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G TPL A GH + +L+K GA +N
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 108 -------AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G++PLHLA +G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N DK G+TPL A GH + +L+K GA +N D F
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G L ++ L++ GAD N TD G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
L V + AY G L +LK I A +TD D R+ LH A S G+ +I FL+Q GV +N
Sbjct: 8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLS 353
KD G +PL A G D + L+ +GA +N V+ G + L A ++ + +L
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
G +P ++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 128 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 237 LRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
L V + AY G L +LK I A +TD D R+ LH A S G+ +I FL+Q GV +N
Sbjct: 9 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKR 350
KD G +PL A G D + L+ +GA +N V+ G CT A ++ +
Sbjct: 69 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 125
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGR 406
+L G +P ++D+ T +H AA++G M +LL AS +D GNTPL DE R
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 407 M 407
+
Sbjct: 186 V 186
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N +D+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G TPL A GH V +L+K GA +N +D F
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
TPLH+AA+ G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N D++G +PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 243 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AY G L +LK I A +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 356
+PL A G D + L+ +GA +N V+ G CT A ++ + +L G
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
+P ++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D+ + +H A ++G + L+ NI+D GNTPL + C
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDE 182
Query: 314 DGV--TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359
+ V LV +GAS+ +++ VA+G + + L+ G + S
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 335 FLCTAVARGDSDFLK-RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
+C G D LK R+L++ + D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKAL 92
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
A ++ AA G+L + L+ A N D +G +PLHLA + FL+ +G I
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 296 IKDKFGNTPL 305
I++K TPL
Sbjct: 200 IENKEEKTPL 209
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G+TPL A GH + +L+K GA +N D
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--------------------- 110
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
NG+ TPLH+AA+ G + ++LL+ GA V +D++G T D GN++
Sbjct: 111 DNGI----------TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA+ G L ++ L++ GAD N D +G +PLHLA +RG+ +I L++ G D+N +DKFG
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISINNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 243 AYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AY G L +LK I A +TD D R+ LH A S G+ +I FL+Q GV +N KD G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSFLCT----AVARGDSDFLKRVLSNGV 356
+PL A G D + L+ +GA +N V+ G CT A ++ + +L G
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 407
+P ++D+ T +H AA++G M +LL AS +D GNTPL DE R+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D+ + +H A ++G + L+ NI+D GNTPL + C
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL--HLACDE 182
Query: 314 DGV--TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359
+ V LV +GAS+ +++ VA+G + + L+ G + S
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 335 FLCTAVARGDSDFLK-RVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
+C G D LK R+L++ + D D RT LH A S G + + LL+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
KD G +PL G ++K L
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKAL 92
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
A ++ AA G+L + L+ A N D +G +PLHLA + FL+ +G I
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 296 IKDKFGNTPL 305
I++K TPL
Sbjct: 200 IENKEEKTPL 209
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 86.3 bits (212), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D++ D FG TPL A GH + +L+K GA +N
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
+ D D TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 108 -------AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AAY G L ++ L++ GAD N D DG +PLHLA GY +I L++ G D+N +DKFG
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 86.3 bits (212), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D+ G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKR 350
D+N KD G TPL A + GH + +L+K GA +N D+ F L A RG + ++
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384
+L NG D +++D +T ++ G +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
A G +D L+ G D+N +D G TPL A GH + +L+K GA +N D+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 335 F--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 392
L A RG + ++ +L NG D ++ D TPLH+AA G + ++LL+ GA V
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 393 TKDRWGNTPLDEGRMCGNKNLIKLLE 418
+D++G T D GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N +D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++RD+ TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V KD G TPL G+ ++++L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVL 99
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 85.5 bits (210), Expect = 7e-17, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GAD N D+ GR+PLH+A + G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
+N D G TPL A GH + +L+K GA +N DA
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI------------------ 102
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
TPL++AA G + ++LL+ GA V +D++G T D GN++L
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 414 IKLLE 418
++L+
Sbjct: 150 AEILQ 154
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA 259
G+K+L G++ +R+ + + + H L + +A H ++ ++ L+R GA
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADANAYDHYGRTPLHMAAAVGHLEIVEV--LLRNGA 59
Query: 260 DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 319
D N D +G +PLHLA S G+ +I L++ G D+N KD G TPL A GH + +
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 320 LVKEGASLNVDD 331
L+K GA +N D
Sbjct: 120 LLKHGADVNAQD 131
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.1 bits (209), Expect = 9e-17, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 33/187 (17%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA-GSFLCTAVARGDSDFLKRV 351
D+N D G+TPL A K GH + +L+K GA +N DD GS
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS----------------- 114
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
TPLH+AA G + ++LL+ GA V +D++G T D GN+
Sbjct: 115 ---------------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 412 NLIKLLE 418
+L ++L+
Sbjct: 160 DLAEILQ 166
Score = 73.2 bits (178), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 200 GRKVLTNLLEGKESNLRL-----KQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGL 254
G+K+L G++ +R+ + ++ T+ G LA RV G L ++ L
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTY--GDTPLHLAARV------GHLEIVEVL 66
Query: 255 IRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314
++ GAD N D+ G +PLHLA RG+ +I L++ G D+N D G+TPL A GH
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Query: 315 GVTSLLVKEGASLNVDD 331
+ +L+K GA +N D
Sbjct: 127 EIVEVLLKYGADVNAQD 143
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G+TPL A GH + +L+K GA +N D GD
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
+G +E ++ AA GD+ +K L + N D +GR +PLH A +
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 62 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L +G D ++D PLH A S G Y +A+LL++ GA V D W TPL E G
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 411 KNLIKLL 417
+ KLL
Sbjct: 123 YEICKLL 129
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR--TPLHVAASEGLYLMAKLLLEAG 388
+A L A GD + +K+ L + RD + R TPLH AA + + LL+ G
Sbjct: 9 EADRQLLEAAKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A V KD+ G PL G+ + +LL
Sbjct: 68 ADVHAKDKGGLVPLHNACSYGHYEVAELL 96
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHL 274
++ AA G K L++ GADP K + DG +PL L
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
+G EA+ L AA GD+ +K L + N D +GR +PLH A +
Sbjct: 3 MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L +G D ++D PLH A S G Y +A+LL++ GA V D W TPL E G
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 411 KNLIKLL 417
+ KLL
Sbjct: 121 YEICKLL 127
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR--TPLHVAASEGLYLMAKLLLEAG 388
+A L A GD + +K+ L + RD + R TPLH AA + + LL+ G
Sbjct: 7 EADRQLLEAAKAGDVETVKK-LCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 389 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
A V KD+ G PL G+ + +LL
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHL 274
++ AA G K L++ GADP K + DG +PL L
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N TD G +PLHLA + G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G+TPL A GH + +L+K GA +N D GD
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N +D G TPL A GH + +L+K GA +N DA
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL----------------- 114
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 115 --------------TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 200 GRKVLTNLLEGKESNLRLKQLK-SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 258
G+K+L G++ +R+ +D+ H + L L AA+ G ++ L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHL----AAWIGHPEIVEVLLKHG 70
Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 318
AD N D DG +PLHLA G+ +I L++ G D+N +D +G TPL A GH +
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 319 LLVKEGASLNVDD 331
+L+K GA +N D
Sbjct: 131 VLLKHGADVNAQD 143
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 230 KHEAELALR-------VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED 282
KH A++ R ++ AA +G L ++ L++ GAD N D G +PLHLA RG+ +
Sbjct: 68 KHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
I L++ G D+N +DKFG T +I G++ + +L K
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 83.2 bits (204), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D+ G +PLHL + G+ +I L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N DK G TPL A GH + +L+K GA +N
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------------------ 107
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
+ DY TPLH+AA +G + ++LL+ GA V +D++G T D GN++
Sbjct: 108 -------AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AAY G L ++ L++ GAD N DY G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 83.2 bits (204), Expect = 3e-16, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 33/184 (17%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ LI GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCTAVARGDSDFLKRV 351
D++ D +G TPL A GH + +L+K GA +N D GS
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----------------- 114
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
TPLH+AA EG + ++LL+ GA V +D++G T D GN+
Sbjct: 115 ---------------TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 412 NLIK 415
+L K
Sbjct: 160 DLAK 163
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D +G TPL M G+ ++++L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL 99
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 81.6 bits (200), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
D+N D G TPL A GH + +L+K GA +N +D
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM-------------------- 111
Query: 353 SNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412
+ TPLH+AA G + ++LL+ GA V +D++G T D GN++
Sbjct: 112 -----------EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 413 LIKLLE 418
L ++L+
Sbjct: 161 LAEILQ 166
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA 259
G+K+L G++ +R+ + +A ++ AA++G L ++ L++ GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 260 DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 319
D N D+ G +PL LA G+ +I L++ G D+N D G+TPL A GH + +
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 320 LVKEGASLNVDD 331
L+K GA +N D
Sbjct: 132 LLKNGADVNAQD 143
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK 290
H LR+ AA G L ++ L++ GAD N D +G +PLHLA G+ +I L++
Sbjct: 78 HAGMTPLRL--AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
G D+N +DKFG T +I G++ + +L K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 300
AA + L +K LI+AGA + D +G + LHLA +G+ ++ +L+ G +D+N +D
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT--AVARGDSDFLKRVLSNGVDP 358
G TP++ A + H + LL+ +G+ +N+ D +C A G D + +L+ D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
+ + +PLH+AA E Y L L + V K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 328
RSPLH A G+ DI L+Q G +I+ + TPL+EA + H L+K GA ++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 329 VDDAGSFLC--TAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
DA C A +G + ++ +LSNG +D + +D TP+ A + KLLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 386 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422
G+ + +D N L G ++ ++L A+C
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 5/182 (2%)
Query: 224 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDI 283
+ F + L + A H D+ + L++AGA+ + D R+PL A + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHM--LVQAGANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 284 TLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVDDAGSF--LCTAV 340
+LI+ G ++ KD G+T L A K GH V L+ G +N D G + + A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
D +K +LS G D + RD + LH AA G +A++LL A + + G++
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 401 PL 402
PL
Sbjct: 180 PL 181
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 204 LTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNK 263
L LL K S++ ++ + +I H AA+ G + + L+ A D +
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHW-------------AAFSGCVDIAEILLAAKCDLHA 172
Query: 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
+ G SPLH+A D + + + D+ +K+K G TPL
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A++ G L +K L++ GA PN ++ +PLH+A G+ ++ +L+Q +N K K
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
TPL A + GH + LL++ A+ N+ L A G + + +L +
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
TPLHVAA G +A+LLLE A + G TPL N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G +K L+ A+PN G +PLH+A G+ + L L++K K G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
TPL A K G V LL++ A N L AV + D +K +L G P
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
S ++ TPLH+AA + +A+ LL+ G S + G TPL G+ ++ LL
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A +H +L +K L+ G P+ ++G +PLH+A + ++ L+Q G N + G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
TPL A + GH + +LL+ + A+ N+ + L G ++ +GV
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
+ TPLHVA+ G + K LL+ A V K + G +PL + G+ +++ LL
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA + + L++ G N G +PLHLA G+ ++ L+ K + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR--GDSDFLKRVLSNGVDPS 359
TPL + GH V +L+K G ++ + VA G+ +K +L + D +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 409
++ +PLH AA +G + LLL+ GAS G TPL + G
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 4/151 (2%)
Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
+PLH+A+ G+ I L+Q+G N+ + TPL A + GH V L++ A +N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 330 ---DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
DD C A G ++ +K +L N +P+ TPLH+AA EG LLE
Sbjct: 76 KAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
AS + G TPL G + +LL
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A+++G++ +K L++ AD N G SPLH A +G+ DI L++ G N G
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 302 NTPLLEAIKCGHDGVTSLL 320
TPL A + G+ VT +L
Sbjct: 378 TTPLAIAKRLGYISVTDVL 396
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 36/178 (20%)
Query: 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR--SPLHLATSRGYEDITL 285
+G EA+ L AA GD+ +K L + N D +GR +PLH A +
Sbjct: 7 LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 286 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345
+L+Q G D++ KDK G PL A GH V LLVK GA +NV D F
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
TPLH AA++G Y + KLLL+ GA K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L +G D ++D PLH A S G Y +A+LL++ GA V D W TPL E G
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 411 KNLIKLL 417
+ KLL
Sbjct: 125 YEICKLL 131
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
++ AA G K L++ GADP K + DG +PL L K D +I+D
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV--------------KDGDTDIQD 161
Query: 299 KF-GNTPLLEAIK 310
G+ LL+A K
Sbjct: 162 LLRGDAALLDAAK 174
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 78.2 bits (191), Expect = 9e-15, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GAD N TD +G +PLHLA + G +I L++ G D
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
+N D G TPL A GH + +L+K GA +N D +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------------------ 106
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
TPLH+AA G + ++LL+ GA V +D G T D G ++L
Sbjct: 107 -------------TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 414 IKLLE 418
++L+
Sbjct: 154 AEILQ 158
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
+GR+PLHLA G+ ++ L++ G D+N KDK G TPL A + GH V LL++ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
+N ++D + RTPLH+AA G + KLLLE
Sbjct: 61 VN-------------------------------AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 387 AGA 389
AGA
Sbjct: 90 AGA 92
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 53/84 (63%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA +G L +K L+ AGAD N D +GR+PLHLA G+ ++ L++ G D+N KDK G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA 325
TPL A + GH V LL++ GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
A G + +K +L G D +++D + RTPLH+AA G + KLLLEAGA V KD+ G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 399 NTPLDEGRMCGNKNLIKLLEDA 420
TPL G+ ++KLL +A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA 90
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
RTPLH+AA G + KLLLEAGA V KD+ G TPL G+ ++KLL +A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +DDAG + L A RG + ++ +L +G D ++RD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ A G +++ L+ GAD N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N +D +G TPL A GH + +L++ GA +N D
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V +D WG TPL G+ ++++L
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
+++AA +G ++K L+ GAD N DG +PLHLA G+ +I L+ KG D+N +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
K GNTP A K GH + LL +GA +N GS
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 326
DG +PLH A G+ + L+ KG D+N + K GNTPL A K GH + LL+ +GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386
+N +R D TP H+A G + + KLL
Sbjct: 68 VN-------------------------------ARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 387 AGASVFTKDRWGNT 400
GA V + WG++
Sbjct: 97 KGADVNARS-WGSS 109
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D + L A G ++ +K++LS G D ++R D TPLH+AA G + KLLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
V + + GNTP + G+ ++KLL+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLD 95
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 72.0 bits (175), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +DDAG + L A RG + ++ +L +G D ++ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 65.1 bits (157), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ A G +++ L+ GAD N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N D +G TPL A GH + +L++ GA +N D
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D WG TPL G+ ++++L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +DDAG + L A RG + ++ +L +G D ++ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
RTPLH+AA+ G + ++LLE GA V +D++G T D GN++L ++L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ A G +++ L+ GAD N D G +PLHLA RG+ +I L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N D +G TPL A GH + +L++ GA +N D
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N +D GR+PLHLA + G+ +I L++ G D+N +DKFG
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D WG TPL G+ ++++L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D DG +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N +D FG TPL A GH + +L+K GA +N D
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +D + L A G + ++ +L G D ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N D G +PLHLA RG+ +I L++ G D+N +DKFG
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D D TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V +D +G TPL + G+ ++++L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVL 99
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 42 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+G+ L+ A +N VDD G S L A A + D +L NG + ++ TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 429 H 429
H
Sbjct: 222 H 222
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
L+ LI + AD N D G+S LH A + D + L++ G + ++++ TPL A +
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 311 CGHDGVTSLLVKEGASLNVDD 331
G +L+ A+ ++ D
Sbjct: 168 EGSYETAKVLLDHFANRDITD 188
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 75 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+G+ L+ A +N VDD G S L A A + D +L NG + ++ TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++ + +
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 429 H 429
H
Sbjct: 255 H 255
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKR 350
G+D+N++ G TPL+ A C G+ + G S +DA + + + +G S
Sbjct: 1 GMDVNVRGPDGFTPLMIA-SCSGGGLET-----GNSEEEEDAPAVISDFIYQGAS----- 49
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
L N D + T LH+AA AK LLEA A +D G TPL
Sbjct: 50 -LHNQTDRTG-----ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 95
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
L+ LI + AD N D G+S LH A + D + L++ G + ++++ TPL A +
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 311 CGHDGVTSLLVKEGASLNVDD 331
G +L+ A+ ++ D
Sbjct: 201 EGSYETAKVLLDHFANRDITD 221
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A +GDL ++K + G D N+T GR PLH A G +I FL+ KG DIN DK
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
TPLL A+ GH LL+ +GA V TA+ D+ +K +L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL--TALEATDNQAIKALL 117
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
A+ GD D +K ++ G D + R PLH AA G + + LL GA + D+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 399 NTPLDEGRMCGNKNLIKLL 417
TPL G+ + +KLL
Sbjct: 69 ITPLLSAVYEGHVSCVKLL 87
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 288 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF 347
+ KG D+N + G PL A CG + L+ +GA +N D
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK--------------- 66
Query: 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
H TPL A EG KLLL GA K G T L+
Sbjct: 67 ----------------HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 320 LVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379
LV G+ + D G L A G D ++ +++NG D +++D + TPLH+AA G
Sbjct: 13 LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
+ KLLLEAGA V +D++G T D GN++L ++L+
Sbjct: 72 VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286
H+G ++L ++ AA G +++ L+ GAD D +G +PLHLA G+ ++
Sbjct: 19 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
L++ G D+ +DKFG T +I G++ + +L
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
A G +D L+ G D+ KDK G+TPL A + GH V LL++ GA + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 372 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
A G +D L+ G D+N KD++G TPL A GH + +L+K GA +N DA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
F TPLH+AA G +A++LL+ GA V +
Sbjct: 81 F-------------------------------TPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 395 DRWGNTPLDEGRMCGNKNLIKLLE 418
D++G T D GN++L ++L+
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PL+LAT+ G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N D G TPL A GH + +L+K GA +N D
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A HG L ++ L++ GAD N D G +PLHLA G+ +I L++ G D+N +DKFG
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D +++D TPL++A + G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D G TPL G+ + ++L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVL 99
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A G L + L++ GADP+ D +G S +HLA G+ I +LI KG D+++ D+ G
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 302 NTPLLEAIKCGHD-GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
TPL+ A H T LL+ S+N+ D
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK---------------------------- 174
Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
Y T LH A G + LLLEAGA+V ++ G + LD + N +I L++A
Sbjct: 175 --YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 421 E 421
Sbjct: 233 R 233
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+G+ L+ A +N VDD G S L A A + D +L NG + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
L+ LI + AD N D G+S LH A + D + L++ G + ++++ TPL A +
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 311 CGHDGVTSLLVKEGASLNVDD 331
G +L+ A+ ++ D
Sbjct: 200 EGSYETAKVLLDHFANRDITD 220
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 310
K L+ A AD N D GR+PLH A S + + LI+ + D++ + G TPL+ A +
Sbjct: 74 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+G+ L+ A +N VDD G S L A A + D +L NG + ++ TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
L +AA EG Y AK+LL+ A+ D P D + + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D +++D D TPLH+AA EG + ++LL+AGA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
V +D++G T D GN++L ++L+ A
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GAD N D DG +PLHLA G+ +I L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
+N +DKFG T +I G++ + +L K
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
A G +D L+ G D+N KDK G TPL A + GH + +L+K GA +N D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D +++D + TPLH+AA G + KLLLEAGA
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
V +D++G T D GN++L ++L+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286
H+G ++L ++ AA G +++ L+ GAD D +G +PLHLA G+ ++
Sbjct: 1 HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 57
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
L++ G D+N +DKFG T +I G++ + +L
Sbjct: 58 LLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
A G +D L+ G D+ KDK G+TPL A + GH V LL++ GA +N D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 372 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
AA G ++L+ GA V KD+ G+TPL G+ ++KLL +A
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A +GDL ++K + G D N+T GR PLH A G +I FL+ KG DIN DK
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
TPLL A+ GH LL+ +GA V G TA D+ +K +L
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTV--KGPDGLTAFEATDNQAIKALL 122
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
A+ GD D +K ++ G D + R PLH AA G + + LL GA + D+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 399 NTPLDEGRMCGNKNLIKLL 417
TPL G+ + +KLL
Sbjct: 74 ITPLLSAVYEGHVSCVKLL 92
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
G + L+ +L G D ++ D H TPL A EG KLLL GA K G T
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Query: 403 D 403
+
Sbjct: 111 E 111
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 252 KGLIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 310
K L+ A AD D GR+PLH A S + + + L + D++ + G TPL+ A +
Sbjct: 39 KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 311 CGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+G+ L+ A +N VDD G S L A A + D +L NG + ++ TP
Sbjct: 99 LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
L +AA EG Y AK+LL+ A+ D P D + + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRA 257
D + V LL + ++L D H G LA R+ A G L+ LI +
Sbjct: 65 ADAQGVFQILLRNRATDL-------DARMHDGTTPLILAARL---ALEG---MLEDLINS 111
Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
AD N D G+S LH A + D + L++ G + ++++ TPL A + G
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 171
Query: 318 SLLVKEGASLNVDD 331
+L+ A+ ++ D
Sbjct: 172 KVLLDHFANRDITD 185
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 293
+L ++ AA G +++ L+ GA P TD+ G SPLHLA G+ T L++ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 353
+ + K TPL A GH + +L+K GA +N
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN------------------------- 94
Query: 354 NGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 413
++D T LH A + +LL++ GA V T+ ++ T D GN++L
Sbjct: 95 ------AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 414 IKLLE 418
++L+
Sbjct: 149 AEILQ 153
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N D G+TPL A GH + +L+K GA +N D
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +D + L A + ++ +L +G D ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
D TPLH+AA G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 200 GRKVLTNLLEGKESNLRLKQLK-SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 258
G+K+L G++ +R+ +D+ + K L L AA + L ++ L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 318
AD N D DG +PLHLA G+ +I L++ G D+N +DKFG T +I G++ +
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 319 LLVK 322
+L K
Sbjct: 131 ILQK 134
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D G+TPL + G+ ++++L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVL 99
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L GAD N DY G +PLHLA G+ +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N G TPL A H + +L+K GA +N D
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L GA +N +D + L A G + ++ +L NG D ++
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
RTPLH+AA + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G L ++ L++ GAD N T GR+PLHLA + +I L++ G D+N +DKFG
Sbjct: 54 AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ + +NG D ++ DY TPLH+AA G + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 391 VFTKDRWGNTPL 402
V G TPL
Sbjct: 73 VNATGNTGRTPL 84
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 288
G A+ A+ ++ A G +K L+ + A PNK D G +PL A S G+ ++ L+
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 289 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
Q G IN + GNT L EA+ H V LL+ GAS+ V
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA HG + L++ GA+ + D PLHLA +G+ + L+ N KD G
Sbjct: 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSR 361
NTPL+ A GH + +LL++ GAS+N + +G+
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINASN---------NKGN----------------- 186
Query: 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
T LH A E + +LLL GASV ++ T +D N +++LL+
Sbjct: 187 -----TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 324 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
G ++ D S L A G +D + +L +G + +R+ D PLH+A +G + + K
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
LL++ A KD GNTPL G+ L+ LL
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 291 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFL 348
G+ +N+ + G++PL A G + LL+K GA+ +A L A +G +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 405
K +L + P+ +D TPL A S G + + LLL+ GAS+ + GNT L E
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 407
L +V ++G+ + D +PLHVAA G + LLL+ GA+ ++ PL
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 408 CGNKNLIKLLEDA 420
G+ ++K L D+
Sbjct: 129 QGHFQVVKCLLDS 141
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA HG + ++ L++ GADP S L LA S+GY DI L+ GVD+N D G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCTAVARG 343
TPLL A+ H +L++ GA ++ D + + AVA G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
IN D+ G TPL+ A G V L++ GA + G S L A ++G +D +K +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
L GVD + D++ TPL A K+LLE+GA + G +D G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 412 NLIKLLE 418
++ +++E
Sbjct: 165 SVQQVIE 171
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
+L V+ A G++ L I N TD +G +PL A + G + FL+Q G D
Sbjct: 20 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 353
+ K + L A G+ + +L+ G +N D G+ L AV +K +L
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 354 NGVDPS 359
+G DP+
Sbjct: 140 SGADPT 145
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
+K L+ G D N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 160
Query: 311 CGHDGVTSLL 320
G+ V ++
Sbjct: 161 LGYRSVQQVI 170
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
L+ AGAD N D GR+PLH A + + + L + ++N + G TPL+ A +
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 313 HDGVTSLLVKEGASLNV-DDAG-SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLH 370
+G+ L+ A +N D++G + L A A +++ + +L + + ++D TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 371 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
+AA EG Y +K LL+ A+ D P D + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA HG + ++ L++ GADP S L LA S+GY DI L+ GVD+N D G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCTAVARG 343
TPLL A+ H +L++ GA ++ D + + AVA G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
IN D+ G TPL+ A G V L++ GA + G S L A ++G +D +K +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
L GVD + D++ TPL A K+LLE+GA + G +D G +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 412 NLIKLLE 418
++ +++E
Sbjct: 147 SVQQVIE 153
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295
+L V+ A G++ L I N TD +G +PL A + G + FL+Q G D
Sbjct: 2 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 353
+ K + L A G+ + +L+ G +N D G+ L AV +K +L
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 354 NGVDPS 359
+G DP+
Sbjct: 122 SGADPT 127
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
+K L+ G D N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 142
Query: 311 CGHDGVTSLL 320
G+ V ++
Sbjct: 143 LGYRSVQQVI 152
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA HG + ++ L++ GADP S L LA S+GY DI L+ GVD+N D G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCTAVARG 343
TPLL A+ H +L++ GA ++ D + + AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAVARGDSDFLKRV 351
IN D+ G TPL+ A G V L++ GA + G S L A ++G +D +K +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411
L GVD + D++ TPL A K+LLE+GA + G +D G +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 412 NLIKLLE 418
++ +++E
Sbjct: 149 SVQQVIE 155
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
+K L+ G D N+ D++G +PL A + L++ G D I+ G + A+
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 311 CGHDGVTSLL 320
G+ V ++
Sbjct: 145 LGYRSVQQVI 154
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 267 DGR--SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 324
DGR +PLHLA I L+Q G D++ KDK G PL A GH VT LL+K G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 325 ASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPS 359
A +N D F L A ++ + +LS+G DP+
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 234 ELALRVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
E AL A+ H Q+ L+ R GA+ N+ + D +PLH+A R + D+ L + G
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352
+N D G T L A GH LL+ G+ ++ F TA G+ + ++++L
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF--TAAQMGN-EAVQQIL 328
Query: 353 SNGVDPSSRDYDHR 366
S + D D+R
Sbjct: 329 SESTPMRTSDVDYR 342
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GAD + D G PLH A S G+ ++T L++ G +N D + TPL EA
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 314 DGVTSLLVKEGAS-----------------------LNVDDAGSFLCTAVARGDSDFLKR 350
V SLL+ GA L + G L A D +K+
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPL 402
L+ + + H T LH A + +A+LLL GA+V K++ TPL
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 259 ADPNKT-----DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
ADP+ +Y L A S E + L V+ + D +TPL A
Sbjct: 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70
Query: 314 DGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 371
+ LL++ GA ++ D G L A + G + + +L +G ++ D TPLH
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 372 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
AAS+ + LLL GA + G + +D
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVD 162
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 336 LCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
L A G+ + L +L+ V+ + D TPLH+AA + +LLL+ GA V K
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 395 DRWGNTPLDEGRMCGNKNLIKLL 417
D+ G PL G+ + +LL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELL 110
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L G + + ++ D TPLHVAA + ++L + GA + D G T L + G+
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 411 KNLIKLL 417
+LL
Sbjct: 293 LQTCRLL 299
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 41/173 (23%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKGVDINIKD 298
AA DL ++K + K + LH A + + + + L++KG ++N K+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDP 358
K TPL A + H+ V +L K GA +N D+
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG------------------------ 280
Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV-------FTKDRWGNTPLDE 404
+T LH AA G +LLL G+ FT + GN + +
Sbjct: 281 -------QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQ 326
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA PN D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 314 DGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
V S L E + L+ DA L A+ RG D + + + V P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 238 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
R++ AA GD+ +++ L+ R P+ + G++ L + G I L L+++G N+
Sbjct: 11 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 69
Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
+D G +P+ +A + G +LV+ GA +NV D L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 109
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
P+H+A EG + L A + + +D G TPL+ G ++L+ +
Sbjct: 110 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 157
Query: 417 LE 418
L+
Sbjct: 158 LQ 159
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 197 FCDGRKVLTNLLEG-KESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLI 255
F DG L G E LRL + +DI + + ++ A ++ +K L+
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYA----NVDGLTALHQACIDDNVDMVKFLV 93
Query: 256 RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL---------- 305
GA+ N+ D +G PLH A S GY DI +LI +G + + G+TPL
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 306 LEAIKCGHDGVT-SLLVKEGASLNVDDA------------------GSFLCTAVARGDSD 346
L + GV KE + + DA G+ L A A+G ++
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 403
LK ++ D + +DYD TPLH AA G ++L+E + ++ G T D
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
++ AA HG L+ LI G N D SPLH A G+ L++ G +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 357
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
+ TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 418 ED 419
D
Sbjct: 186 MD 187
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 328
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 329 -VDDAGSFLCTAVARGDSDFLKRVLSNG--VDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 121
Query: 386 EAGASVFTKDRWGNTPL-----DEGRMCGNK 411
G ++ K TPL ++ R C K
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKK 152
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
+K L+ +GAD N+ SPLH E++ L+ G D K+ G P+
Sbjct: 150 VKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
N D R+PL +A G E+ L++ + KD G+T L+ A+K G+ L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 322 KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379
+G+++N D + L ++ G S+ +L +G + + R+ + TPL VA+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
+ K LLE GA + +D G T R+ G + +IK+ +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ G++ N D+ G++PL + GY +++ FL++ G ++N ++ G TPL+ A K G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
+ L++ GA ++ D A AR
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+ N + +G +PL +A+ G +I L++ G DI+ +D G T A G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 314 DGVTSLLVK 322
V + +
Sbjct: 180 QEVIKIFTE 188
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 216 RLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA 275
++K++ D T+ + + + E +N A ++ D+ K LI GAD N + SP A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 276 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 334
++G +I ++++ D+N +++G L+ A + GH LL+++G ++D
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 335 FLCTAV------ARGDS---DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
F TA+ G+ D +K ++ NG D S +D RT + A +G ++K+L
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 386 E 386
+
Sbjct: 199 Q 199
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 262 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 321
++ D +G +PL++A +I LI +G DIN+++ ++P L A G + + ++
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 322 KEGA-SLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS--SRDYDHRTPLH-VAASE 375
K LN + G+ L A +G D +K +L +G + D+ + + V E
Sbjct: 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Query: 376 GLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
G L + KLL+E GA KD G T +D G + K+L
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA PN D G SP+H A G+ D L++ G D+N+ D G P+ A++ GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 314 DGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFL 348
V S L E + L+ DA L A+ RG D +
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 238 RVNSAAYHGDLYQLKGLI-RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296
R++ AA GD+ +++ L+ R P+ + G++ L + G I L L+++G N+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 297 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGV 356
+D G +P+ +A + G +LV+ GA +NV D L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL-------------------- 103
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
P+H+A EG + L A + + +D G TPL+ G ++L+ +
Sbjct: 104 -----------PIHLAVQEG-HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 417 LE 418
L+
Sbjct: 152 LQ 153
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A+ G++ ++ L+ GADP+ + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCTAVARG 343
TPLL A++ H L+ GA L + D+G + + AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 32/185 (17%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
+L ++ A G+L QLK +R G + NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSN 354
+I L KE S L A G +D + +L
Sbjct: 63 HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414
VD + D++ TPL A + LL GA + T+ G TP+D G + +
Sbjct: 92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 415 KLLED 419
+++E+
Sbjct: 152 QVIEN 156
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286
HI E E AL + S + D+ L L+ D N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 292
++L ++ AA G +++ L+ GAD N D G +PLHLA + +I L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 293 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
D+N D G TPL GH + +L+K GA +N D
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 305 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVDPSSRD 362
LLEA + G D +L+ GA +N +D L A + ++ +L NG D ++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
TPLH+ A G + ++LL+ GA V +D++G T D GN++L ++L+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA + L ++ L++ GAD N D G +PLHL G+ +I L++ G D+N +DKFG
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 302 NTPLLEAIKCGHDGVTSLLVK 322
T +I G++ + +L K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390
D G L A G D ++ +++NG D ++ D TPLH+AA + ++LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 391 VFTKDRWGNTPLDEGRMCGNKNLIKLL 417
V D G TPL M G+ ++++L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVL 99
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA PN D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
V S L E + L+ DA +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 275 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 333
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 334 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
S + A G D LK ++ +G D ++ D P+H+A EG + L + +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLE 418
+D G TPL+ R G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
V+ AA G L LK L+ GAD N D G P+HLA G+ + FL + D++ +D
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRD 138
Query: 299 KFGNTPLLEAIKCGHDGVTSLL 320
G TPL A + G + +L
Sbjct: 139 ASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA PN D G SP+H A G+ D L++ G D+N D G+ P+ AI+ GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 314 DGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
V S L E + L+ DA +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 275 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 333
A +RG +++ L ++ V + ++FG T L + + G V L+K+GAS NV DA
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 334 --SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
S + A G D LK ++ +G D ++ D P+H+A EG + L + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLE 418
+D G TPL+ R G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
V+ AA G L LK L+ GAD N D G P+HLA G+ + FL + D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPES-DLHHRD 136
Query: 299 KFGNTPLLEAIKCGHDGVTSLL 320
G TPL A + G + +L
Sbjct: 137 ASGLTPLELARQRGAQNLMDIL 158
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A+ G++ ++ L+ GADP+ + S L LA++ GY DI L+++ VDINI D G
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCTAVARG 343
TPLL A+ H L+ GA L + D+G + + AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 294
+L ++ A G+L QLK +R G + NK D G +PL A++ G + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 295 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVL 352
+I K + L A G+ + LL++ +N+ D G+ L AV ++ +L
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 353 SNGVDPSSRDYDHRTPLHVAASEG 376
+ G D ++ TP+ +A + G
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALG 146
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286
HI E E AL + S + D+ L L+ D N D++G +PL A +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 320
L+ +G D+ + G TP+ A+ G+ V ++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
G DP T++ G + LH+A+ +G +L+Q G D N+KD G TPL EA GH V
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 318 SLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 377
LL++ A +N + Y + +PLH AA G
Sbjct: 60 ELLLQHKALVN-------------------------------TTGYQNDSPLHDAAKNGH 88
Query: 378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 426
+ KLLL GAS + +G P+D K+L+ L E E + S
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ 289
H E L + A+ GD+ ++ L++ G+DPN D+ G +PLH A + G+ + L+Q
Sbjct: 7 NHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 290 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 329
+N ++PL +A K GH + LL+ GAS N
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
++ A HG L ++ L++ A N T Y SPLH A G+ DI L+ G N +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 299 KFGNTPL 305
FG P+
Sbjct: 107 IFGLRPV 113
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKE 323
+YDG + LH+A + ++ L+++G DI+ D K G +PL+ A++ + LL++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 324 GASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASE 375
GA++N S L +A RG ++ ++ +G D S ++ + TPL VA S
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 263 KTDYDGRSPLHLATSRG-----YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 317
+ D DG +PLH+A +G + + LF Q G +++I + TPL A+ V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 318 SLLVKEGAS-LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS-----RDYDHRTPLHV 371
LLV GAS + +D G S R L + P + R+YD T LHV
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 372 AASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNKNLIKLL 417
A + +LLLE GA + D + G +PL + ++++LL
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
A + L ++ L++ GA+ N Y G S LH A+ RG + L++ G D ++K+
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 302 NTPLLEA 308
+TPL+ A
Sbjct: 217 DTPLMVA 223
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 254 LIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
L+ GAD + D GRSPL A + L+Q G ++N + G++ L A G
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194
Query: 313 HDGVTSLLVKEGA 325
+ LV+ GA
Sbjct: 195 LLPLVRTLVRSGA 207
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 298
++ AA HG L+ LI G N D SPLH A G+ L++ G +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVD 357
+TPL A G +LL++ GAS+ + D S + A RG + + +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
+ TPL++A K LLE+GA V + + ++PL ++ L LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 418 ED 419
D
Sbjct: 242 MD 243
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN- 328
SP+H A G++ LI +G +NI +PL EA GH +L+K GA +N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 329 -VDDAGSFLCTAVARGDSDFLKRVLSNG--VDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
D + L A G D + +L +G V P S D +P+H AA G L+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLASPIHEAARRGHVECVNSLI 177
Query: 386 EAGASVFTKDRWGNTPL-----DEGRMCGNKNLIKLLEDA 420
G ++ K TPL ++ R C + KLLE
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRAC----VKKLLESG 213
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 251 LKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310
+K L+ +GAD N+ SPLH E++ L+ G D K+ G P +E +
Sbjct: 206 VKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP-VELVP 263
Query: 311 CGHDGVTSLLVKEGASL 327
L +EGASL
Sbjct: 264 PESPLAQLFLEREGASL 280
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 206 NLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD 265
+L GK +NLR K I + LAL ++S+ G+ ++ +I DP+ +
Sbjct: 10 SLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPN 67
Query: 266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+G + LH A G+ +I FL+Q GV++N D G TPL A C + V LV+ GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 326 SL 327
++
Sbjct: 128 AV 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 326 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
SL D+ + L AV G ++ +K ++ GV+ ++ D D TPLH AAS + K L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 386 EAGASVFT 393
E+GA+VF
Sbjct: 124 ESGAAVFA 131
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
+ L + G+ D ++R++ DPS + + T LH A G + K L++ G +V
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
D G TPL C N + K L
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 340
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L A
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
+ G D ++++L D ++ + PLH A G +A+ L+ GA V +++G
Sbjct: 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 401 PLDEGR 406
P+D+ +
Sbjct: 141 PVDKAK 146
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
LI GA N + +PLHLA S G+ DI L+Q DIN ++ GN PL A G
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Query: 314 DGVTSLLVKEGASLNV 329
D V LV GA +++
Sbjct: 118 DQVAEDLVANGALVSI 133
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 258
+GR + +L + + + + D H+ AA HG ++ L++
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHL-------------AASHGHRDIVQKLLQYK 95
Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 318
AD N + G PLH A G + + L+ G ++I +K+G P+ +A + +
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155
Query: 319 LLVKEGASLN 328
K G +LN
Sbjct: 156 RAEKMGQNLN 165
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 338 TAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDR 396
T G++ ++ L N + ++ DH +PLH A EG + ++L+ GA + +R
Sbjct: 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Query: 397 WGNTPLDEGRMCGNKNLIKLL 417
+TPL G++++++ L
Sbjct: 71 GDDTPLHLAASHGHRDIVQKL 91
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCTAV 340
+ L+L D+N D G +PL A + G V +L+ GA +NV + G + L A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 341 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 400
+ G D ++++L D ++ + PLH A G +A+ L+ GA V +++G
Sbjct: 76 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 401 PLDEGR 406
P+D+ +
Sbjct: 136 PVDKAK 141
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
LI GA N + +PLHLA S G+ DI L+Q DIN ++ GN PL A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Query: 314 DGVTSLLVKEGASLNV 329
D V LV GA +++
Sbjct: 113 DQVAEDLVANGALVSI 128
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG 258
+GR + +L + + + + D H+ AA HG ++ L++
Sbjct: 44 EGRSAVVEMLIMRGARINVMNRGDDTPLHL-------------AASHGHRDIVQKLLQYK 90
Query: 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 308
AD N + G PLH A G + + L+ G ++I +K+G P+ +A
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 338 TAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDR 396
T G++ ++ L N + ++ DH +PLH A EG + ++L+ GA + +R
Sbjct: 6 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 65
Query: 397 WGNTPLDEGRMCGNKNLI-KLLE 418
+TPL G+++++ KLL+
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQ 88
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 206 NLLEGKESNLRLKQLKSDITFH---IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPN 262
+L GK +NLR + S+ H + + LAL ++S+ G+ ++ +I DP+
Sbjct: 8 SLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPS 64
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
+ +G + LH A G+ +I FL+Q GV++N D G TPL A C + V LV+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 323 EGASL 327
GA++
Sbjct: 125 SGAAV 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 326 SLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385
SL D+ + L AV G ++ +K ++ GV+ ++ D D TPLH AAS + K L+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 386 EAGASVFT 393
E+GA+VF
Sbjct: 124 ESGAAVFA 131
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 334 SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
+ L + G+ D ++R++ DPS + + T LH A G + K L++ G +V
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 394 KDRWGNTPLDEGRMCGNKNLIKLL 417
D G TPL C N + K L
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+R GADP +G +P LA G + + KG D+N D +G T +EA G
Sbjct: 58 LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 314 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 360
L K GA++N+ + L A +G + LK +L G D ++
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 361 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 402
D R L H S + + LLL+ GA V + G TPL
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 242 AAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
A + D+ ++ L+ GA+ N + + G +PLH A EDI L++ G D ++ K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC--TAVARGDSDFLKRVLSNGVDP 358
G TP L A G + L + +GA +N D F A G LK + G +
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 359 SSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 402
+ R T L AA +G + K+LL E GA V D G L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 188 SFTNILEIYFCDGRKVLTNLLE-GKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHG 246
FT +E K L L + G NLR K + G A + AA G
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-----ATALMDAAEKG 159
Query: 247 DLYQLKGLI-RAGADPNKTDYDGRSPL-HLATSRGYED---ITLFLIQKGVDINIKDKFG 301
+ LK L+ GAD N D GR+ L H S D IT L+ G D+N++ + G
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 302 NTPLLEAIKCGHDG-VTSLLVKEGASLNVDDA 332
TPL+ A++ H G V LL +E +N D+
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
N L++A++ + L++ GA++N ++ G + L AV D ++ +L +G DP
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 312
L+ GAD N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Query: 313 HDGVTSLLVKEGASLNVDD 331
+ LL K GAS + D
Sbjct: 265 LKKIAELLCKRGASTDCGD 283
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
+ D DGR PLH + S +IT FL+ K ++N+ D G TP A G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
L LN C +A G F + ++ NG +D ++ PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 246 GDLYQLKGLIRAGADP--NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 303
G+L +K L P NK G + LHLA + + +++ FLI+ G + IKDKF
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 304 PLLEAIKCGHDGVTSLLVKEGAS-LNVDDAGSF--LCTAVARGDSD 346
PL A G + LL G S +N D + L A+A G D
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
+ D DGR PLH + S +IT FL+ K ++N+ D G TP A G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
L LN C +A G F + ++ NG +D ++ PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 260 DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 319
D NK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 320 LVKEGAS-LNVDDAGSF--LCTAVARGDSD 346
L G S +N D + L A+A G D
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCGHDGVTSL 319
+ D DGR PLH + S +IT FL+ K ++N+ D G TP A G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 320 LVKE--GASLNVDDAGSFLCTAVARGDSDF--LKRVLSNGVDPSSRDYDHRTPLHVAASE 375
L LN C +A G F + ++ NG +D ++ PLH AAS
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 376 GLYLMAKLLLEAGAS-VFTKDRWGNTPL 402
G + +LL G S V +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 260 DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 319
D NK G + LHLA + + +++ FLI+ G + IKDKF PL A G + L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 320 LVKEGAS-LNVDDAGSF--LCTAVARGDSD 346
L G S +N D + L A+A G D
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
FG T L + +K G+ + L+ GA+ ++ D F + A G D L+ +L N D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
+ D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
++
Sbjct: 156 MQ 157
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 297
++ AA G L L+ L+ AD N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
+ + +GN A + + +TSLL + G + G+ + +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
+P +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 416 LL 417
L
Sbjct: 121 FL 122
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+R GADP +G +P LA G + + KG D+N D +G T +EA G
Sbjct: 78 LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Query: 314 DGVTSLLVKEGASLNV------------DDAGSFLCTAVARGDSDFLKRVLSN-GVDPSS 360
L K GA++N+ + L A +G + LK +L G D ++
Sbjct: 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 361 RDYDHRTPL-HVAAS---EGLYLMAKLLLEAGASVFTKDRWGNTPL 402
D R L H S + + LLL+ GA V + G TPL
Sbjct: 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 242 AAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
A + D+ ++ L+ GA+ N + + G +PLH A EDI L++ G D ++ K
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC--TAVARGDSDFLKRVLSNGVDP 358
G TP + A G + L + +GA +N D F A G LK + G +
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 359 SSRDYDHR----------TPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL 402
+ R T L AA +G + K+LL E GA V D G L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCG 312
L+ GAD N G++PL LA + + + L+ Q+ ++IN D G T LL A++
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVD----PSSRDY 363
+ LL K GAS D G + TA D +K +LS+G P + D+
Sbjct: 285 LKKIAELLCKRGAST---DCGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDW 336
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCTAVARGDSDFLKRVLSNGVDP 358
N L++A++ + L++ GA++N ++ G + L AV D ++ +L +G DP
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
R + TP +AA G + KL L GA V D +G T E + G +K L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
SAA GDL QL L++ + N + GR+ L + G +I L+ +G + ++KD+
Sbjct: 11 SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360
GN + +A + G FL D L+ +L D +
Sbjct: 70 GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 418
D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L++
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 297
++ AA G L L+ L+ AD N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
+ + +GN A + + +TSLL + G + G+ + +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
+P +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 416 LL 417
L
Sbjct: 121 FL 122
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
FG T L + +K G+ + L+ GA+ ++ D F + A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
+ D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
++
Sbjct: 156 MQ 157
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 297
++ AA G L L+ L+ AD N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
+ + +GN A + + +TSLL + G + G+ + +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
+P +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 416 LL 417
L
Sbjct: 121 FL 122
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D G + +H A G+ D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
FG T L + +K G+ + L+ GA+ ++ D F + A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
+ D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
++
Sbjct: 156 MQ 157
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 297
++ AA G L L+ L+ AD N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
+ + +GN A + + +TSLL + G + G+ + +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
+P +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 416 LL 417
L
Sbjct: 121 FL 122
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCTAVARGD 344
L + D++ + G TPL+ A + +G+ L+ A +N VDD G S L A A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 345 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 404
D +L NG + ++ TPL +AA EG Y AK+LL+ A+ D P D
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 405 GRMCGNKNLIKLLED 419
+ + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 215 LRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHL 274
LR + D H G LA R+ A G L+ LI + AD N D G+S LH
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARL---ALEG---MLEDLINSHADVNAVDDLGKSALHW 54
Query: 275 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
A + D + L++ G + ++++ TPL A + G +L+ A+ ++ D
Sbjct: 55 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA+ N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 314 DGVTSLL 320
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
AL ++ + L + + GAD N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
+N D G PL A GH G+ L +K GA L D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L NG + + D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 411 KNLIKLL-----EDAECTQ 424
+++ LL +AE Q
Sbjct: 314 ADIVTLLRLAKMREAEAAQ 332
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
D+ TPL A + L + LL+ GA+V D G PL + G+ L L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA+ N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 314 DGVTSLL 320
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
AL ++ + L + + GAD N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
+N D G PL A GH G+ L +K GA L D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L NG + + D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 411 KNLIKLL-----EDAECTQ 424
+++ LL +AE Q
Sbjct: 314 ADIVTLLRLAKMREAEAAQ 332
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
D+ TPL A + L + LL+ GA+V D G PL + G+ L L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L+ GA+P+ D G + +H A G D L++ D+NI+D GN PL A K GH
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 314 DGVTSLLVKEGAS 326
V LVK AS
Sbjct: 116 LRVVEFLVKHTAS 128
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 300 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCTAVARGDSDFLKRVLSNGVD 357
FG T L + +K G+ + L+ GA+ ++ D F + A G D L+ +L D
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 416
+ D + PLH+AA EG + + L++ AS V ++ G+T D R+ G ++ L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 417 LE 418
++
Sbjct: 156 MQ 157
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK 297
++ AA G L L+ L+ AD N D +G PLHLA G+ + FL++ ++ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
+ G+T A G + V SL+ GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355
+ + +GN A + + +TSLL + G + G+ + +R+L G
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 60
Query: 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415
+P +D +H AA G + LLE A V +D GN PL G+ +++
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 416 LL 417
L
Sbjct: 121 FL 122
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313
L++ GA+ N+ D GR PLH AT G+ + +++G D+ +D G PL A++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 314 DGVTSLL 320
+ +LL
Sbjct: 314 ADIVTLL 320
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 293
AL ++ + L + + GAD N + D +PL AT+ FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 294 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
+N D G PL A GH G+ L +K GA L D+
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
+L NG + + D R PLH A G +A L L+ GA + +D G PL N
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 411 KNLIKLL-----EDAECTQ 424
+++ LL +AE Q
Sbjct: 314 ADIVTLLRLAKMREAEAAQ 332
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 364 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
D+ TPL A + L + LL+ GA+V D G PL + G+ L L
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 254 LIRAGADPNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL-LEAI 309
L +AGADP + RS LH A + G L + DI D+ G T L + A
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAH 244
Query: 310 KCGHDGVTS--LLVKEGASLNVDDAG----------SFLCTAVARGDSDFLKRVL-SNGV 356
G D V S LLV++GA ++ D A + L A + +K ++ G
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGS 304
Query: 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 416
+ +D D +TP+ +AA EG + L++ GASV D +T + + N++ +
Sbjct: 305 NKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 417 LE 418
+
Sbjct: 365 FD 366
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 288 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF 347
I G D+N D NTPL A+ + + L K GA + + A + DF
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
Query: 348 LKRVLS-NGV----DPSSRDYDHRTPLH-VAASEGL--YLMAKLLLEAGASV 391
V N D D + T L VA +EG AKLL+E GA V
Sbjct: 213 GXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV 264
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 300
A HG + +K L+ AD N D DG + L A G+++I L L DI++ D+
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 301 GNTPLLEAIKCGHDGVTSLL 320
G+T L+ A+ G + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 247 DLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 306
D+ + L R G K G++ L LA S G D+ L+ D+N++D G+T L+
Sbjct: 162 DIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALM 221
Query: 307 EAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCTAVARGDSDFLKRVLS 353
A + GH + LL+ + SL D + L A+ G S+ + S
Sbjct: 222 CACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 301
AA G+L ++ ++ DP++ + +G + LH A I FLI G ++N D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 302 NTPLLEAIKCGHDGVTSLLVKEGASL 327
TPL A C + LV+ GA++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAI 113
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 335 FLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394
L A G+ + +++ + DPS + + T LH A Y + L+ AGA+V +
Sbjct: 24 LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 395 DRWGNTPLDEGRMCGN 410
D G TPL C +
Sbjct: 84 DSHGWTPLHCAASCND 99
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 305 LLEAIKCGHDGVTSLLVKE--GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362
LL+A G V VKE S ++ + L A+ + + +++ G + +S D
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 363 YDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393
TPLH AAS ++ L++ GA++F
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
L A +RG + L++ G D N ++FG P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
+ L R P+H AA EG +L AGA +
Sbjct: 75 PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
D WG P+D G++++ + L A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI 288
G +A LA +AA G + ++ L+ AGADPN + GR P+ + G + L+
Sbjct: 10 GSSDAGLA----TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64
Query: 289 QKGVDINIKDKFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
G + N D T P+ +A + G +L + GA L+V DA
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVK 322
T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SLL+K
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 323 EGASLN 328
GA +N
Sbjct: 170 CGADVN 175
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 217 LKQLKSDITF-----HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
++Q+K D+ F ++ + LA+ N + L+ AG DP D+ G +P
Sbjct: 25 IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI------AEALLGAGCDPELRDFRGNTP 78
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKF------GNTPLLEAIKCGHDGVTSLLVKEGA 325
LHLA +G L Q ++ G+T L A G+ G+ LLV GA
Sbjct: 79 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 138
Query: 326 SLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+N + + L AV + D + +L G D + Y +P
Sbjct: 139 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-- 326
++PLHLA +I L+ G D ++D GNTPL A + G +L + +
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 327 ----LNVDDAGSFLCTAVA--RGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYL 379
L + C +A G ++ ++S G D ++++ + RT LH+A
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 380 MAKLLLEAGASVFTKDRWGNTP 401
+ LLL+ GA V G +P
Sbjct: 163 LVSLLLKCGADVNRVTYQGYSP 184
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 366 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
+TPLH+A +A+ LL AG +D GNTPL
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 79
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
L A +RG + L++ G + N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
+ L R P+H AA EG +L AGA +
Sbjct: 75 PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
+D WG P+D G++++ + L A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
+AA G + +++ L+ AGA+PN + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA 76
Query: 301 GNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
T P+ +A + G +L + GA L+V DA
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVK 322
T+Y+G + LHLA+ GY I L+ G D+N ++ G T L A+ + + SLL+K
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 323 EGASLN 328
GA +N
Sbjct: 173 CGADVN 178
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 217 LKQLKSDITF-----HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271
++Q+K D+ F ++ + LA+ N + L+ AG DP D+ G +P
Sbjct: 28 IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI------AEALLGAGCDPELRDFRGNTP 81
Query: 272 LHLATSRGYEDITLFLIQKGVD------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 325
LHLA +G L Q + + G+T L A G+ G+ LLV GA
Sbjct: 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
Query: 326 SLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP 368
+N + + L AV + D + +L G D + Y +P
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-- 326
++PLHLA +I L+ G D ++D GNTPL A + G +L + +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 327 ----LNVDDAGSFLCTAVA--RGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGLYL 379
L + C +A G ++ ++S G D ++++ + RT LH+A
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 380 MAKLLLEAGASVFTKDRWGNTP 401
+ LLL+ GA V G +P
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSP 187
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 365 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
+TPLH+A +A+ LL AG +D GNTPL
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 76 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+S+L + +V SRL + +F +LE Y
Sbjct: 136 M-----KLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLEEY 182
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 32/126 (25%)
Query: 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKE 323
+YDG +PLH+A ++ L G D+N + G TPL A++ V LL+K
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 324 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
GA DP++R Y RTPL A ++A+L
Sbjct: 215 GA-------------------------------DPTARMYGGRTPLGSALLRPNPILARL 243
Query: 384 LLEAGA 389
L GA
Sbjct: 244 LRAHGA 249
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
A H D ++ L AGAD NK + GR+PLHLA + L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 336
G TPL A+ + + LL GA +D G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 389
D + L AV D++ ++ + G D + + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 390 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 327
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 328 NVDDAGSFL-----CT-----AVARGDSDFLKRVLSNGVDPSSRD---------YDHRTP 368
D + ++L CT A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 402
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 32/126 (25%)
Query: 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKE 323
+YDG +PLH+A ++ L G D+N + G TPL A++ V LL+K
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 324 GASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383
GA DP++R Y RTPL A ++A+L
Sbjct: 215 GA-------------------------------DPTARMYGGRTPLGSALLRPNPILARL 243
Query: 384 LLEAGA 389
L GA
Sbjct: 244 LRAHGA 249
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 AAYHGDLYQLKGLIRAGADPNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
A H D ++ L AGAD NK + GR+PLHLA + L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 336
G TPL A+ + + LL GA +D G L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGA 389
D + L AV D++ ++ + G D + + RTPLH+A + +LLL+AGA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 390 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 417
+ G TPL + N L +LL
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 327
G++ LHLA G L G + + ++ G+T L A + +L++ S
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 328 NVDDAGSFL-----CT-----AVARGDSDFLKRVLSNGVDPSSRD---------YDHRTP 368
D + ++L CT A A DS + N +P D YD TP
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDS---QPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 369 LHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPL 402
LHVA M +LL +AGA + + G TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 31/149 (20%)
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 331
L A +RG + L++ G N + +G P+ + + G V LL+ GA N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 391
+ L R P+H AA EG +L AGA +
Sbjct: 75 PAT-------------LTR-----------------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 392 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420
+D WG P+D G++++ + L A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
+AA G + +++ L+ AGA PN + GR P+ + G + L+ G + N D
Sbjct: 18 TAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA 76
Query: 301 GNT-PLLEAIKCGHDGVTSLLVKEGASLNVDDA 332
T P+ +A + G +L + GA L+V DA
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 254 LIRAGADPNKTDYDGRS-PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312
L+ GA+PN D + P+H A G+ D + L + G ++++D +G P+ A + G
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122
Query: 313 HDGVTSLL 320
H V L
Sbjct: 123 HRDVARYL 130
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
P+ Y G PL A G E+I LI+ G DI +D GNT L
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 23/156 (14%)
Query: 269 RSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL--------LEAIKCGHDGVTSL 319
SPL LA + ++ L +G +++ + G T L LEA + L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 320 LVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-------------YDHR 366
V E + + + + L AV + + ++ +L+ G S+R Y
Sbjct: 64 -VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402
PL AA G + +LL+E GA + +D GNT L
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 268 GRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL---LVK 322
G++ LH G Y + L+Q G KDK TPL A + + L V
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 323 EGASLNVDDAG----SFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 378
+SL +D A S L A+ D R + G+D + D +H PL+++
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 379 LMAKLLLE 386
L+ K LL+
Sbjct: 258 LLTKELLQ 265
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 23/180 (12%)
Query: 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 322
K+D + +H+A +G D LI+ GV I+++FG T L A K G L
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 323 EGASLNVDDAGSFLCTAVARGDSDFLKRVL----SNGVDPSS--RDYDHR---------- 366
G ++ + AV +D + ++ G P S + D R
Sbjct: 75 VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 367 -----TPLHVAASEGLYLMA--KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419
T LH G + K+L++ GAS KD+ TPL N+ + L D
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 323
+ G S LH A +ED+ ++ G+D+N +D PL +++ LL KE
Sbjct: 207 ANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAA----XVLLTKE 262
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 125
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVL 204
++L S FGE+ +L + +V RL + +F +LE Y R
Sbjct: 126 KGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 185
Query: 205 TNLLE-----GKESNLRLKQLKSDIT 225
T L+ GK++++ L +++ D+
Sbjct: 186 TVALDRLDRIGKKNSILLHKVQHDLN 211
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 239 VNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFL-IQKGVDINIK 297
++ AA G+L L+ + N D G + L+ A G++DI L Q +++N +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGA---------SLNVDDAGSFLCTAV--ARGDSD 346
+K G+T L A G+ + LL+ +GA L D A + C ++ + +D
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQGTD 196
Query: 347 FLKRVLSNGVD 357
+ R LSN D
Sbjct: 197 AV-RTLSNAED 206
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 270 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLN 328
+PLH A RG + V +N DK G+T L A GH D V L + LN
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 329 VDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAAS 374
+ + L A +G +D ++ +L+ G R+ + + A +
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 77 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 131
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
++L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 132 KGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 72 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 131
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 132 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 134 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ E +++QG+ D Y
Sbjct: 45 LFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSV- 103
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
Q SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 104 GQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIE 163
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 7/123 (5%)
Query: 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXX----- 132
+ ++ +IE V LFK +IV + E+ + GE I+ QG D Y
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 133 --XXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFT 190
+ FGE++++ N P+ + + L +D Q+F
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFE 274
Query: 191 NIL 193
+L
Sbjct: 275 RLL 277
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 77 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 136
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 137 M-----KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G + ++YF
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYF-----IQHGVVSVLT 125
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
++L S FGE+ +L + V RL + +F +LE Y
Sbjct: 126 KGNKETKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + LF F+ ++ ++ E F PG+ I+ +G V ++YF
Sbjct: 77 VATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKE 136
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 137 M-----KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 210
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 210
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV- 99
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209
SFGE++++ N P+ T+ L +D+ +F I+ RK+ + +E
Sbjct: 100 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 159
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LF F+ + ++ E F PG+ I+ +G + + YF
Sbjct: 79 LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYF-----IQHGVVSVLTKGNKE 133
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIY 196
+L S FGE+ +L + +V RL + +F +LE Y
Sbjct: 134 XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 101 QIVIRVHEEFFLP-GEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFG 159
++VI EE +P G I++QG+ D Y P SSFG
Sbjct: 24 RLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSG-----PGSSFG 78
Query: 160 EVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
E++++ N P+ TV L +D+ +F IL
Sbjct: 79 ELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
++FGE SIL N P+ T+ E S LLRI+++ F + E Y R+ + LL
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY----RQYMAGLL 164
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV-IDRGTFDIYVKCDGVGRCV 103
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
SFGE++++ N P+ T+ L +D+ +F I+
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ + +F+G +N ++ + F G I ++G D+LY
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYT---VCICEL 178
+ + P+ FGE+SI P P T VC+ E+
Sbjct: 88 RENLLTIMGPSDMFGELSIFD--PGPRTSSAVCVTEV 122
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXX 149
LFK E ++Q++ + E+ GE +++QG+ D Y
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV-IDRGTFDIYVKCDGVGRCV 109
Query: 150 SQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
SFGE++++ N P+ T+ L +D+ +F I+
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
++FGE SIL N P+ T+ E S LLRI+++ F + E Y R+ + LL
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY----RQYMAGLL 164
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
++FGE SIL N P+ T+ E S LLRI+++ F + E Y R+ + LL
Sbjct: 117 TAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY----RQYMAGLL 164
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 32/144 (22%)
Query: 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
I+ FLI KG DI + K G T + G + +T
Sbjct: 57 ISXFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT------------------------- 91
Query: 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLH-------VAASEGLYLMAKLLLEAGASVFTKD 395
G ++ K L G D ++ ++ + V +E + L + ++G + KD
Sbjct: 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEXIPLYKLIFSQSGLQLLIKD 151
Query: 396 RWGNTPLDEGRMCGNKNLIKLLED 419
+WG T L+ + C +K ED
Sbjct: 152 KWGLTALEFVKRCQKPIALKXXED 175
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
+ V F G S F+ ++V + E F P + ++++G D+++F
Sbjct: 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFF----IQQGIVDIIMS 128
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILE 194
+ L S FGE+ +L + +V L + Q F +L+
Sbjct: 129 DGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 111 FLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQP 170
F+ GE +++QG+ D Y + + SFGE++++ P+
Sbjct: 67 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA-----TSVGEGGSFGELALIYGTPRA 121
Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
TV +L ID+ S+ IL RK+ L
Sbjct: 122 ATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
++ NG ++ D T LH AA KLLL+ A V T + G T LD R +
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252
Query: 411 KNLIKLLEDAEC 422
K +LLE A+
Sbjct: 253 KECEELLEQAQA 264
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 216 RLKQLKSDITFHIGKHEAELALRVNSAAYHG----DLYQLKGLIRAGADPNKTDYDGRSP 271
+ KQLKS F K + + +SA+Y+ ++ + L+ AGA N + P
Sbjct: 11 KSKQLKS---FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFP 65
Query: 272 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 327
LH A + I L+ G+D + D GNT L A+ G+ L VK+ L
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 111 FLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQP 170
F+ GE +++QG+ D Y + + SFGE++++ P+
Sbjct: 63 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA-----TSVGEGGSFGELALIYGTPRA 117
Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
TV +L ID+ S+ IL RK+ L
Sbjct: 118 ATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 155
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410
++ NG ++ D T LH AA KLLL+ A V T + G T LD R +
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271
Query: 411 KNLIKLLEDAE 421
K +LLE A+
Sbjct: 272 KECEELLEQAQ 282
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 111 FLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQP 170
F+ GE +++QG+ D Y + + SFGE++++ P+
Sbjct: 65 FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA-----TSVGEGGSFGELALIYGTPRA 119
Query: 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
TV +L ID+ S+ IL RK+ L
Sbjct: 120 ATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 157
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 254 LIRAGADPNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
L AGAD + D G + LH+A ++ L++ G DI ++D+ G T L
Sbjct: 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 260 DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGHDGVTS 318
D + D +GR+ L G + L + G D++ +D G T L A V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 319 LLVKEGASLNVDDAGSFLCTAVAR 342
LV+ GA + V+D +AR
Sbjct: 129 ALVELGADIEVEDERGLTALELAR 152
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 254 LIRAGADPNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305
L AGAD + D G + LH+A ++ L++ G DI ++D+ G T L
Sbjct: 95 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 241 SAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 300
+AA D L L+ D + D +GR+ L G + L + G D++ +D
Sbjct: 50 TAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 301 GN-TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 342
G T L A V LV+ GA + V+D +AR
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 45/218 (20%)
Query: 152 LQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEGK 211
+ P FGE++IL N + TV +L ID+Q F I+ + T L++
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM---------MRTGLIKHT 153
Query: 212 ESNLRLKQLKSDITFHIGKHE--AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGR 269
E ++ LKS TF E ++LA + Y Y +IR GA +
Sbjct: 154 EY---MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEY----IIRQGARGD------- 199
Query: 270 SPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHD--GVTSLLVKEGAS 326
T F+I KG V++ +D P+ D G +L ++ +
Sbjct: 200 --------------TFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRT 245
Query: 327 LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD 364
NV A + C + D D K ++ D S++ Y+
Sbjct: 246 ANVIAAEAVTCLVI---DRDSFKHLIGGLDDVSNKAYE 280
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Query: 76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXX 135
I T YM +++ V F+ E ++++ + E + GE I+ QG D +
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 136 XXXXXXX-XXXXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
L FGE ++ + V E L ID+ SF +++
Sbjct: 210 NVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268
>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
Length = 189
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 353 SNGVDPSSRDYDHRTPLHVAASE------GLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 406
SN VDP +DY VAA + G Y + + A V +D W
Sbjct: 33 SNYVDPVYKDY-------VAAMKARNIPFGSYAFCRFVSVEDAKVEARDFWNR------- 78
Query: 407 MCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMH 440
G+K+ + + D E T +S+ +Q ID+++
Sbjct: 79 --GDKDSLFWVADVEVTTMSDMRAGTQAFIDELY 110
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 99
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
+ + SFGE++++ P+ TV +L ID+ S+ IL
Sbjct: 100 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXX 144
IEK LF + I + F+ GE +++QG+ D Y
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 106
Query: 145 XXXXXSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNIL 193
+ + SFGE++++ P+ TV +L ID+ S+ IL
Sbjct: 107 -----TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 150
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 112 LPGEVIMEQGNVVDQLYFXXXXXXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPY 171
+ GE +++QGN D Y + + SFGE++++ P+
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWV-----TNISEGGSFGELALIYGTPRAA 213
Query: 172 TVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208
TV +L ID+ S+ IL RK+ L
Sbjct: 214 TVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYF 129
++ LF+ S + + + + F PGE ++ QG+ + +YF
Sbjct: 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYF 121
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG 398
G++ ++VL NGV PS D + +Y+ A ++L++G+ + +R G
Sbjct: 297 GEAILKRQVLLNGVQPSRAD--------ALVGKSIYVSATVILQSGSDMVEAERTG 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,983,679
Number of Sequences: 62578
Number of extensions: 621540
Number of successful extensions: 2120
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 522
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)