Query 010169
Match_columns 516
No_of_seqs 204 out of 1114
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 21:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2522 Filamentous baseplate 100.0 3E-100 6E-105 780.8 31.1 447 1-516 109-557 (560)
2 PF01253 SUI1: Translation ini 99.9 4.2E-22 9E-27 167.0 8.6 83 422-505 1-83 (83)
3 TIGR01159 DRP1 density-regulat 99.8 1.2E-19 2.6E-24 170.7 9.5 90 419-509 82-172 (173)
4 COG0023 SUI1 Translation initi 99.8 5.2E-19 1.1E-23 152.6 8.4 81 422-509 23-103 (104)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.8 2.7E-18 5.9E-23 141.8 8.2 75 428-509 2-76 (77)
6 PRK00939 translation initiatio 99.7 5.1E-18 1.1E-22 146.5 7.8 76 426-508 24-99 (99)
7 TIGR01158 SUI1_rel translation 99.7 1.9E-16 4.2E-21 137.4 8.5 78 424-508 22-100 (101)
8 TIGR01160 SUI1_MOF2 translatio 99.7 1.9E-16 4.2E-21 138.6 8.5 84 425-510 25-108 (110)
9 KOG3239 Density-regulated prot 99.6 4.4E-15 9.6E-20 137.2 8.0 95 420-515 95-192 (193)
10 KOG1770 Translation initiation 99.5 2.7E-14 5.9E-19 121.8 8.3 87 422-510 24-110 (112)
11 COG2016 Predicted RNA-binding 99.5 1.7E-14 3.7E-19 133.5 6.1 64 1-68 96-159 (161)
12 PRK07451 translation initiatio 99.4 1.9E-13 4.1E-18 120.6 7.2 74 425-505 37-111 (115)
13 PRK06824 translation initiatio 99.4 2.8E-13 6.1E-18 120.1 7.1 73 426-505 41-114 (118)
14 PRK14560 putative RNA-binding 99.4 3.6E-13 7.7E-18 126.3 7.4 63 1-67 96-158 (160)
15 TIGR03684 arCOG00985 arCOG0415 99.4 6.1E-13 1.3E-17 123.5 7.8 62 1-66 89-150 (150)
16 KOG2523 Predicted RNA-binding 99.4 2E-13 4.3E-18 125.5 3.6 67 1-68 112-179 (181)
17 PRK09019 translation initiatio 99.4 7.3E-13 1.6E-17 115.6 6.5 74 425-505 30-104 (108)
18 TIGR00451 unchar_dom_2 unchara 99.0 5.4E-10 1.2E-14 98.0 7.4 58 1-62 50-107 (107)
19 smart00151 SWIB SWI complex, B 98.4 5.5E-07 1.2E-11 74.6 5.2 74 317-406 2-75 (77)
20 PF01472 PUA: PUA domain; Int 98.2 1.2E-06 2.6E-11 71.8 4.6 55 1-60 20-74 (74)
21 PF02201 SWIB: SWIB/MDM2 domai 97.3 0.00024 5.1E-09 58.7 3.7 57 318-380 3-59 (76)
22 PRK13795 hypothetical protein; 96.9 0.0016 3.4E-08 74.0 6.4 55 1-60 146-200 (636)
23 smart00359 PUA Putative RNA-bi 96.8 0.0037 7.9E-08 50.7 6.6 57 1-61 20-77 (77)
24 PF05046 Img2: Mitochondrial l 96.8 0.0065 1.4E-07 51.6 8.2 65 430-502 16-87 (87)
25 PRK13794 hypothetical protein; 96.7 0.0033 7.1E-08 69.1 6.6 53 1-58 145-197 (479)
26 TIGR00425 CBF5 rRNA pseudourid 96.1 0.013 2.8E-07 61.3 7.2 47 15-63 268-314 (322)
27 COG5531 SWIB-domain-containing 95.4 0.013 2.9E-07 58.3 3.5 57 317-379 122-178 (237)
28 KOG1946 RNA polymerase I trans 94.8 0.036 7.8E-07 55.6 4.5 53 327-379 104-157 (240)
29 PRK13534 7-cyano-7-deazaguanin 94.7 0.056 1.2E-06 61.5 6.5 47 13-61 592-638 (639)
30 PRK14724 DNA topoisomerase III 91.2 0.34 7.3E-06 57.9 6.1 54 319-378 915-968 (987)
31 PRK03988 translation initiatio 90.4 1.1 2.3E-05 41.5 7.4 87 394-498 6-96 (138)
32 TIGR00311 aIF-2beta translatio 89.9 1.1 2.5E-05 41.0 7.0 81 396-494 3-87 (133)
33 PRK05429 gamma-glutamyl kinase 89.9 0.48 1E-05 50.6 5.3 41 1-45 301-341 (372)
34 KOG2570 SWI/SNF transcription 89.2 1.9 4.1E-05 46.3 8.9 65 311-378 195-261 (420)
35 PF10357 Kin17_mid: Domain of 87.8 1.8 3.8E-05 39.5 6.6 85 171-283 14-98 (127)
36 KOG4034 Uncharacterized conser 86.3 0.92 2E-05 42.5 4.0 68 426-502 96-169 (169)
37 PRK12336 translation initiatio 83.2 4.7 0.0001 39.5 7.7 86 395-498 3-92 (201)
38 smart00653 eIF2B_5 domain pres 81.5 3.7 8E-05 36.5 5.7 61 425-494 6-70 (110)
39 PRK04270 H/ACA RNA-protein com 81.1 2.8 6.1E-05 43.5 5.6 32 28-60 268-299 (300)
40 TIGR01027 proB glutamate 5-kin 80.9 1.9 4.2E-05 45.8 4.5 41 1-45 293-333 (363)
41 COG1370 Prefoldin, molecular c 74.4 7.7 0.00017 36.3 5.7 43 12-56 108-150 (155)
42 PF01873 eIF-5_eIF-2B: Domain 67.1 7.1 0.00015 35.5 3.8 61 423-492 17-81 (125)
43 COG1549 Queuine tRNA-ribosyltr 64.2 8.6 0.00019 42.4 4.4 32 28-60 487-518 (519)
44 PF12872 OST-HTH: OST-HTH/LOTU 58.9 13 0.00028 29.6 3.6 58 175-239 3-60 (74)
45 PF09808 SNAPc_SNAP43: Small n 58.0 22 0.00048 34.3 5.7 94 170-280 42-139 (194)
46 PRK06319 DNA topoisomerase I/S 49.7 15 0.00033 43.5 3.7 59 314-378 782-840 (860)
47 cd08768 Cdc6_C Winged-helix do 33.7 90 0.0019 25.4 4.9 41 195-239 21-61 (87)
48 COG3432 Predicted transcriptio 28.9 58 0.0013 28.3 3.0 34 222-275 43-76 (95)
49 PRK13402 gamma-glutamyl kinase 23.8 95 0.0021 33.3 4.2 32 13-45 306-337 (368)
50 KOG0632 Phytochelatin synthase 21.7 59 0.0013 33.8 2.0 27 209-235 218-245 (388)
No 1
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-100 Score=780.78 Aligned_cols=447 Identities=37% Similarity=0.534 Sum_probs=372.4
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccCCCCCCCCCCCcc
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLE 80 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g~~~~~P~~~~~~ 80 (516)
|+||.+.+..++|+|+.|++|||+..||.+|+|||++.||+++|.++|.|||||+|+|||.|+||+.|+..-+|+ |..
T Consensus 109 ~l~~~~m~ppg~p~~~~G~lcai~lpgn~ap~AiGc~~Msseem~v~GlkGkav~ilH~frD~Lw~sgp~~laPs--~~~ 186 (560)
T KOG2522|consen 109 NLMISGMIPPGDPRCKIGTLCAIALPGNEAPLAIGCVEMSSEEMKVIGLKGKAVKILHHFRDGLWKSGPMKLAPS--FVL 186 (560)
T ss_pred cccccccCCCCCcccccCceeeEecCCCcCceeeeeeecchHHHHHhccccceEEEEeehhhhhhhcCCCCCCCc--ccc
Confidence 677777666677999999999999999999999999999999999999999999999999999999997444442 111
Q ss_pred cccccCccccccccccCcccccCCCCCcccCCCcCcccccCCCCCCCCCCCCcCCCCCccchhhccccccccccccc-CC
Q 010169 81 DVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENV-DA 159 (516)
Q Consensus 81 ~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (516)
...-.+..+.+. +.+ +.++++++.. . ..++.++. ..
T Consensus 187 gs~eddn~i~~~-------------s~e-~seed~evh~--------------------------~---~~el~ed~st~ 223 (560)
T KOG2522|consen 187 GSQEDDNNISSK-------------SIE-SSEEDKEVHK--------------------------E---QEELKEDSSTV 223 (560)
T ss_pred cchhcccccchh-------------hhc-cchhhhhHHH--------------------------H---hhhccchhccc
Confidence 100000000000 000 0000000000 0 00111111 11
Q ss_pred CCCcccccCCChhhHHHHHHHHHHHHhHhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCc
Q 010169 160 GETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGL 239 (516)
Q Consensus 160 ~~~~~~~~~~~~e~~D~~l~~all~al~~~~~~~~LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl 239 (516)
+..++.++.+++|+||+||.+|||+||+++++..+|||++|+||++|||.|+|+|.+||||||||||++||||+|+++|+
T Consensus 224 e~n~ekqd~~t~e~vD~lLtrcll~aLk~r~k~~dLPi~~stf~~~hi~sc~P~gr~ldiKKts~KKlakfLQ~~~~egi 303 (560)
T KOG2522|consen 224 EENAEKQDHFTVEDVDYLLTRCLLYALKQRDKGLDLPISASTFISNHIMSCLPPGRHLDIKKTSWKKLAKFLQHFEKEGI 303 (560)
T ss_pred ccchhhhcccCHhhHHHHHHHHHHHHhhhhcccccCCccHHHHHHhhhhccCCCcceeccchhhHHHHHHHHHHHhhccc
Confidence 22234456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccccceEEeeccCCCeeEEEEecCCCCcccccCcccCcccchhhhccccccCCCCCCcccEEEEE
Q 010169 240 FVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEV 319 (516)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~i~~KE~~~~g~~~I~~vn~~hp~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 319 (516)
|++| +++.+++|+++|++||++++|.|++...+.. .+......+.......+.|.+|
T Consensus 304 --------------------i~vK--~kg~e~~iv~vn~~hpe~ksFvppk~~~~~s-~~i~E~st~q~~~p~~~~i~~l 360 (560)
T KOG2522|consen 304 --------------------IKVK--GKGDELTIVGVNTDHPELKSFVPPKLGCKSS-TEIRESSTSQEKTPGMMYILTL 360 (560)
T ss_pred --------------------eeec--ccCceeEEEEccCCCchhhccCCCcCCCccc-ccccccccccccCCCcceeeee
Confidence 9999 7788999999999999999999998754221 1111111122334556899999
Q ss_pred ecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHhccccccCCCCCcccchHhHH
Q 010169 320 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLG 399 (516)
Q Consensus 320 y~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~~~~~~~g~~~~~~i~r~~l~ 399 (516)
|+|+.....+|.++|.++++|||.+|||+++.+||++|||++++||++|+|||+|||+++++ .+.+..++..++|+.|.
T Consensus 361 Yk~~~~~~~Lf~evg~~kg~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~~k~-~K~~~a~~~~~pw~~l~ 439 (560)
T KOG2522|consen 361 YKPFNLAKDLFKEVGLAKGTLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMVNKK-KKVLNASRIIAPWEILH 439 (560)
T ss_pred eccchHHHHHHHhcCccccceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHHHhh-hhccccccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 44556778899999999
Q ss_pred HHHHHccccceEeecCCc-cccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCC
Q 010169 400 STFVNRMQAHHVVSRGSQ-SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKK 478 (516)
Q Consensus 400 ~~~l~~m~~~~~i~~~~~-~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k 478 (516)
.+|+++|+++|+|.++|+ .+++||.+|+|.|.+|+|.|||+||+|+|||.|||||+.+|.+||++|+||+||.+.||.|
T Consensus 440 ~~~~~rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~k 519 (560)
T KOG2522|consen 440 PLLTNRMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFK 519 (560)
T ss_pred HHHHhcCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCC
Confidence 999999999999988765 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCcHHHHHHHHHHhcCCCCccEEEcccccCC
Q 010169 479 GQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK 516 (516)
Q Consensus 479 ~~eV~vQGd~~~~V~~~L~~~~gip~k~I~~~~k~kkk 516 (516)
+.||+|||+|++.|.++|.+.||||++||++++|++||
T Consensus 520 g~eVqvQGnqih~iadlL~k~ygipkK~I~gleka~Kk 557 (560)
T KOG2522|consen 520 GAEVQVQGNQIHSIADLLNKSYGIPKKWIDGLEKAKKK 557 (560)
T ss_pred CceEEEecchhhHHHHHHHHhhCCCHHHHhHHHHhhcc
Confidence 99999999999999999999999999999999987765
No 2
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.86 E-value=4.2e-22 Score=167.03 Aligned_cols=83 Identities=47% Similarity=0.696 Sum_probs=71.4
Q ss_pred cCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcC
Q 010169 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFG 501 (516)
Q Consensus 422 kG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~g 501 (516)
||+.++|+|++++|+|||.||+|+||+.|++|+++||++|+++||||+||.+.+++ +.+|+|||||++.|.++|.++|+
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k-~~~I~iQGd~~~~i~~~L~~~~~ 79 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGK-GEEIQIQGDHRDEIKDLLVEKGG 79 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTT-SSEEEEESS-HHHHHHHHHHHCS
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCC-CCEEEECCcHHHHHHHHHHHhCC
Confidence 57899999999999999999999999999999999999999999999999998864 78999999999999999999988
Q ss_pred CCCc
Q 010169 502 IPKR 505 (516)
Q Consensus 502 ip~k 505 (516)
+|++
T Consensus 80 ~~k~ 83 (83)
T PF01253_consen 80 IPKK 83 (83)
T ss_dssp SE-S
T ss_pred CCCC
Confidence 8864
No 3
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.80 E-value=1.2e-19 Score=170.74 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=84.5
Q ss_pred ccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHH
Q 010169 419 VVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVE 498 (516)
Q Consensus 419 ~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~ 498 (516)
..+||.+++|+|++++|+|||.||+|+||+.|++|++++|+.|+++||||+||++.+++ +.+|+|||||++.|.++|.+
T Consensus 82 ~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~-~~eI~IQGD~~~~v~e~L~~ 160 (173)
T TIGR01159 82 KKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTG-KEEIVIQGDVMDDIEDYIHE 160 (173)
T ss_pred hhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCC-CCEEEecCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999987775 58999999999999999999
Q ss_pred hc-CCCCccEEE
Q 010169 499 QF-GIPKRYIEV 509 (516)
Q Consensus 499 ~~-gip~k~I~~ 509 (516)
+| +||...|+.
T Consensus 161 ~~~~v~e~~I~~ 172 (173)
T TIGR01159 161 KWPEVGDKDIKD 172 (173)
T ss_pred HcCCCCHHHeee
Confidence 99 999988875
No 4
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.2e-19 Score=152.57 Aligned_cols=81 Identities=35% Similarity=0.452 Sum_probs=75.3
Q ss_pred cCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcC
Q 010169 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFG 501 (516)
Q Consensus 422 kG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~g 501 (516)
+...+.|+|++++|+++|.||+|+||+.|.+|+++||++|+++||||+|| +..+|+|||||++.|.+||.+ .|
T Consensus 23 k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv------k~~~IeiQGdhr~~v~~~L~~-~G 95 (104)
T COG0023 23 KEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV------KDGEIEIQGDHRDKVKELLIK-KG 95 (104)
T ss_pred cccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee------cCCEEEEeChHHHHHHHHHHH-cC
Confidence 44468999999999999999999999999999999999999999999999 456999999999999999977 79
Q ss_pred CCCccEEE
Q 010169 502 IPKRYIEV 509 (516)
Q Consensus 502 ip~k~I~~ 509 (516)
++.++|.+
T Consensus 96 ~k~k~i~~ 103 (104)
T COG0023 96 FKVKNIGI 103 (104)
T ss_pred Cchhhccc
Confidence 99999975
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.75 E-value=2.7e-18 Score=141.84 Aligned_cols=75 Identities=32% Similarity=0.553 Sum_probs=70.3
Q ss_pred EEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCCCccE
Q 010169 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYI 507 (516)
Q Consensus 428 I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip~k~I 507 (516)
|+|++++|.|||.||+|+||+.|.+|++++|+.|+++||||+||.+ .+|+|||||++.|.++|.+ .|++...|
T Consensus 2 V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~------~~I~lQGD~r~~v~~~L~~-~g~~~~~i 74 (77)
T cd00474 2 VRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD------EVIELQGDQRKKIKEFLIK-MGFAKDNI 74 (77)
T ss_pred EEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec------CEEEEeCcHHHHHHHHHHH-cCCCHHHe
Confidence 7999999999999999999999999999999999999999999953 6999999999999999977 69999888
Q ss_pred EE
Q 010169 508 EV 509 (516)
Q Consensus 508 ~~ 509 (516)
.+
T Consensus 75 ~i 76 (77)
T cd00474 75 KI 76 (77)
T ss_pred Ee
Confidence 65
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.73 E-value=5.1e-18 Score=146.46 Aligned_cols=76 Identities=29% Similarity=0.483 Sum_probs=71.7
Q ss_pred ceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCCCc
Q 010169 426 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKR 505 (516)
Q Consensus 426 ~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip~k 505 (516)
.+|+|++++|+|||.||+|.||+.|++|+++||++|+++||||+||. +.+|+|||||++.|.++|.+ +|||.+
T Consensus 24 ~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk------~~~I~iQGD~r~~v~~~L~~-~G~~~~ 96 (99)
T PRK00939 24 QRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVK------DGRIELQGDHRERVKELLIK-MGFSEE 96 (99)
T ss_pred ceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEE------CCEEEEeCcHHHHHHHHHHH-cCCChh
Confidence 78999999999999999999999999999999999999999999993 46899999999999999976 899999
Q ss_pred cEE
Q 010169 506 YIE 508 (516)
Q Consensus 506 ~I~ 508 (516)
+|+
T Consensus 97 ~i~ 99 (99)
T PRK00939 97 NIE 99 (99)
T ss_pred hcC
Confidence 984
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.66 E-value=1.9e-16 Score=137.36 Aligned_cols=78 Identities=31% Similarity=0.381 Sum_probs=72.2
Q ss_pred CcceEEEEEEEe-cCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC
Q 010169 424 ALKTIQIVTERR-QGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 502 (516)
Q Consensus 424 ~~~~I~I~~e~R-~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gi 502 (516)
....|.|++++| +|+|.||+|.||+.|.++++++|+.|+++||||+|| ++.+|+|||||++.|.++|.+ +|+
T Consensus 22 ~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv------k~~~IeiQGD~~~~v~~~L~~-~G~ 94 (101)
T TIGR01158 22 EDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV------KDGVIEIQGDHRDRVKDLLEK-KGF 94 (101)
T ss_pred CCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE------eCCEEEEeCcHHHHHHHHHHH-cCC
Confidence 457899999999 899999999999999999999999999999999999 357999999999999999976 799
Q ss_pred CCccEE
Q 010169 503 PKRYIE 508 (516)
Q Consensus 503 p~k~I~ 508 (516)
+.++|.
T Consensus 95 ~~k~~~ 100 (101)
T TIGR01158 95 KVKLIG 100 (101)
T ss_pred CeeecC
Confidence 999874
No 8
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.66 E-value=1.9e-16 Score=138.63 Aligned_cols=84 Identities=31% Similarity=0.451 Sum_probs=74.2
Q ss_pred cceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCCC
Q 010169 425 LKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPK 504 (516)
Q Consensus 425 ~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip~ 504 (516)
-..|+|++++|+|||.||+|.||+ ..+|++++||.|+++|||++||.+.++. +.+|+|||||++.|.++|.++.-+++
T Consensus 25 ~~~I~Iri~qR~grK~VTiI~Gl~-~~~dlk~l~K~lKkk~~cGGsVk~~~~~-~~~IelQGD~re~v~~~L~~~g~~~~ 102 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTVQGLP-KEYDLKKIVKALKKEFACNGTVIEDPEM-GEVIQLQGDQRKNVCEFLISQGLLKK 102 (110)
T ss_pred cceEEEEEEEccCCccEEEEeccC-ChHHHHHHHHHHHHHhCCCceEEeCCCC-CCEEEEeCcHHHHHHHHHHHcCCCCH
Confidence 457999999999999999999999 4899999999999999999999887664 57999999999999999987533687
Q ss_pred ccEEEc
Q 010169 505 RYIEVL 510 (516)
Q Consensus 505 k~I~~~ 510 (516)
..|.+.
T Consensus 103 ~~i~vh 108 (110)
T TIGR01160 103 DQIKIH 108 (110)
T ss_pred HHeeec
Confidence 778763
No 9
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=99.57 E-value=4.4e-15 Score=137.21 Aligned_cols=95 Identities=31% Similarity=0.434 Sum_probs=83.4
Q ss_pred cccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHh
Q 010169 420 VRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 499 (516)
Q Consensus 420 ~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~ 499 (516)
.+|+-+++|.|..+-|..||.||+|+||+.|+||++..|+.|.++|||++||+..+.+ ..||.||||..+.|.+|+.++
T Consensus 95 ~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~k-kdEIvIQGDv~dDi~d~I~ek 173 (193)
T KOG3239|consen 95 KKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEK-KDEIVIQGDVKDDIFDFIPEK 173 (193)
T ss_pred HhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCc-cceEEEeccchHHHHHHHHHh
Confidence 4456678999999999999999999999999999999999999999999999987775 489999999999999999987
Q ss_pred c-CCCCc--cEEEcccccC
Q 010169 500 F-GIPKR--YIEVLDKTAR 515 (516)
Q Consensus 500 ~-gip~k--~I~~~~k~kk 515 (516)
| .+|.. .|+-...+||
T Consensus 174 w~ev~ed~~~IED~~~kKk 192 (193)
T KOG3239|consen 174 WPEVPEDDVKIEDLGDKKK 192 (193)
T ss_pred cccCCcccceeecchhhhc
Confidence 6 88888 5555555544
No 10
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.7e-14 Score=121.79 Aligned_cols=87 Identities=31% Similarity=0.465 Sum_probs=77.5
Q ss_pred cCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcC
Q 010169 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFG 501 (516)
Q Consensus 422 kG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~g 501 (516)
.|....|+|++++|+|||++|+|.|+.. ..|++.+.+.|+|.|||+++|.+.|.. |..||+||||+..|.+||.....
T Consensus 24 ~g~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~-gevIQLqGDqR~nv~~fl~~~g~ 101 (112)
T KOG1770|consen 24 AGTEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEY-GEVIQLQGDQRKNVCQFLVQVGL 101 (112)
T ss_pred cCccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCccc-CceEEeccchhhhHHHHHHHhcc
Confidence 4566699999999999999999999964 459999999999999999999999876 78999999999999999998777
Q ss_pred CCCccEEEc
Q 010169 502 IPKRYIEVL 510 (516)
Q Consensus 502 ip~k~I~~~ 510 (516)
+.+..|.+.
T Consensus 102 ~k~~~ikih 110 (112)
T KOG1770|consen 102 VKKDNIKIH 110 (112)
T ss_pred ccccceeec
Confidence 777777654
No 11
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.7e-14 Score=133.53 Aligned_cols=64 Identities=31% Similarity=0.424 Sum_probs=59.4
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSV 68 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g 68 (516)
|+|||+... ++|++||+|.|..++++.|+|||+++||..+| ....|||||+++||.||.||++.
T Consensus 96 M~PGIv~~~---~~ik~Gd~VvV~~e~~~~plAVG~alm~~~em-~~~~kGkav~~iHhvGD~lw~~~ 159 (161)
T COG2016 96 MAPGIVSAD---GEIKEGDIVVVVDEKKGRPLAVGIALMSGKEM-EEKKKGKAVKNIHHVGDKLWEAS 159 (161)
T ss_pred eccceeecC---CCccCCCEEEEEEcCCCCeeEEEeeccCHHHH-hhhcCCeEEEEEeccChHHHhhh
Confidence 999999654 68999999999999999999999999999999 56899999999999999999863
No 12
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.44 E-value=1.9e-13 Score=120.57 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=63.9
Q ss_pred cceEEEEEEE-ecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCC
Q 010169 425 LKTIQIVTER-RQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIP 503 (516)
Q Consensus 425 ~~~I~I~~e~-R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip 503 (516)
-..|.|++++ ++++|.||+|.||..+..|+++||+.|+++|+|++|| ++.+|+|||||++.|.++|.+ .|+.
T Consensus 37 ~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv------kd~~IelQGD~r~~v~~~L~~-~Gf~ 109 (115)
T PRK07451 37 QQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV------KDNTIEIQGDHRQKILEILIK-LGYK 109 (115)
T ss_pred ceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE------cCCEEEEcCcHHHHHHHHHHH-CCCe
Confidence 3567777653 3466999999999999999999999999999999999 457999999999999999976 5887
Q ss_pred Cc
Q 010169 504 KR 505 (516)
Q Consensus 504 ~k 505 (516)
.+
T Consensus 110 ~k 111 (115)
T PRK07451 110 AK 111 (115)
T ss_pred Ee
Confidence 65
No 13
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.42 E-value=2.8e-13 Score=120.11 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=65.7
Q ss_pred ceEEEEEEEe-cCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCCC
Q 010169 426 KTIQIVTERR-QGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPK 504 (516)
Q Consensus 426 ~~I~I~~e~R-~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip~ 504 (516)
..|+|+.++| +++|.||+|.||.....|+++||+.|+++|+|++|| ++.+|+|||||++.|.++|.+ .|+..
T Consensus 41 ~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv------kd~~IeiQGD~r~~v~~~L~~-~G~~~ 113 (118)
T PRK06824 41 GIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL------KDGVIEIQGDHVELLLAELLK-RGFKA 113 (118)
T ss_pred ceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE------ecCEEEEcCcHHHHHHHHHHH-CCCeE
Confidence 3788877755 689999999999999999999999999999999999 457999999999999999976 68876
Q ss_pred c
Q 010169 505 R 505 (516)
Q Consensus 505 k 505 (516)
+
T Consensus 114 k 114 (118)
T PRK06824 114 K 114 (118)
T ss_pred e
Confidence 6
No 14
>PRK14560 putative RNA-binding protein; Provisional
Probab=99.41 E-value=3.6e-13 Score=126.35 Aligned_cols=63 Identities=29% Similarity=0.407 Sum_probs=57.7
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeeccccccc
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGS 67 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~ 67 (516)
|+|||+... ++|++|++|+|+..+++.|+|||++.||+++|. .+.+|+||+++||+||+||++
T Consensus 96 m~pGV~~~~---~~~~~Gd~V~I~~~~~~~~vavG~~~~s~~ei~-~~~kG~~v~~~h~~~D~lw~~ 158 (160)
T PRK14560 96 MAPGIVEAD---EDIKEGDIVFVVEETHGKPLAVGRALMDGDEMV-EEKKGKAVKNIHHVGDEIWEF 158 (160)
T ss_pred ecCeeeeCC---CCCCCCCEEEEEECCCCeEEEEEEEeeCHHHHh-hcCCceEEEEEEEcCchhhcc
Confidence 899998533 589999999999988789999999999999995 689999999999999999987
No 15
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=99.39 E-value=6.1e-13 Score=123.47 Aligned_cols=62 Identities=34% Similarity=0.485 Sum_probs=56.7
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccc
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWG 66 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~ 66 (516)
|+|||+.. + ++|++|++|+|...+++.|+|||++.||+++|. ...+|+||+++|++||+||+
T Consensus 89 m~pGV~~~-~--~~~~~Gd~V~I~~~~~~~~vavG~a~~ss~ei~-~~~kG~av~~~h~~~D~lw~ 150 (150)
T TIGR03684 89 MAPGIVSA-D--PSIKEGDIVFVVDETHRKPLAVGIALMDAEEME-EEKKGKAVKNIHHVGDKIWE 150 (150)
T ss_pred ccCceecC-C--CCCCCCCEEEEEECCCCeEEEEEEEeeCHHHHh-hcCCCeEEEEEEEcCccccC
Confidence 89999853 2 589999999999998899999999999999995 68899999999999999995
No 16
>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2e-13 Score=125.48 Aligned_cols=67 Identities=31% Similarity=0.497 Sum_probs=62.3
Q ss_pred CCCccccCCCCC-CCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccC
Q 010169 1 MFPGISIPADGL-PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSV 68 (516)
Q Consensus 1 M~PGvv~~~~~~-~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g 68 (516)
|+||++.|.+.+ |.+++|++|+|+..|+.+++|||.+.|++.|| .+..||.+++++||+||.||.+.
T Consensus 112 McPGlts~g~~l~~~~ekd~~V~i~aeGK~~alAiG~~~ms~kei-~s~nKGiGIE~~H~l~DgLw~~~ 179 (181)
T KOG2523|consen 112 MCPGLTSPGAKLPPGVEKDTIVAIMAEGKEHALAIGLTKMSAKEI-KSVNKGIGIENYHYLNDGLWKMK 179 (181)
T ss_pred EcccCCCCcccCCCCccCCCEEEEEecCchhhhhhhhhhhcHHHH-HhhccCCceEEEEecCCchhhee
Confidence 999999998766 67899999999999999999999999999999 56889999999999999999873
No 17
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.37 E-value=7.3e-13 Score=115.64 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=63.8
Q ss_pred cceEEEEEEEe-cCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCCC
Q 010169 425 LKTIQIVTERR-QGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIP 503 (516)
Q Consensus 425 ~~~I~I~~e~R-~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gip 503 (516)
...|.|+.+++ +++|.||+|.||.....|+++||+.|+++|+|++||. +.+|+|||||++.|.++|.+ .|+.
T Consensus 30 ~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk------~~~IelQGD~r~~v~~~L~~-~Gf~ 102 (108)
T PRK09019 30 DGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVK------DGVIEIQGDKRDLLKSLLEA-KGMK 102 (108)
T ss_pred CceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEE------cCEEEEcCcHHHHHHHHHHH-CCCe
Confidence 34677776643 4568999999999889999999999999999999994 57999999999999999976 5887
Q ss_pred Cc
Q 010169 504 KR 505 (516)
Q Consensus 504 ~k 505 (516)
.+
T Consensus 103 ~k 104 (108)
T PRK09019 103 VK 104 (108)
T ss_pred EE
Confidence 65
No 18
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=99.03 E-value=5.4e-10 Score=97.96 Aligned_cols=58 Identities=31% Similarity=0.359 Sum_probs=52.5
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecc
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD 62 (516)
|+|||+... ++|++|++|+|...+++.++|||++.||+++|.. ..||+||+++|++||
T Consensus 50 ~~pGV~~~~---~~~~~gd~V~I~~~~~~~~iavG~a~~~s~e~~~-~~~G~~v~~~h~~~D 107 (107)
T TIGR00451 50 MRPGIVDAD---EDIKEGDDVVVVDENKDRPLAVGIALMSGEEMKE-MDKGKAVKNIHHIGD 107 (107)
T ss_pred cCCeeEeCC---CCcCCCCEEEEEECCCCeEEEEEEEecCHHHHHh-cCCCeEEEEEEecCC
Confidence 899998643 4899999999998887899999999999999954 689999999999998
No 19
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=98.36 E-value=5.5e-07 Score=74.58 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=58.6
Q ss_pred EEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHhccccccCCCCCcccchH
Q 010169 317 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKK 396 (516)
Q Consensus 317 ~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~~~~~~~g~~~~~~i~r~ 396 (516)
++.|+++..+..||.. ..+|++||+..|++||+.|||+++.|++.|+.|+.|.+++.. ..+...
T Consensus 2 ~~~~~ls~~L~~~lg~------~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~----------~~v~~~ 65 (77)
T smart00151 2 TKKVTLSPELAKVLGA------PEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGK----------DRMDMF 65 (77)
T ss_pred CCcccCCHHHHHHhCC------CcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCc----------CeecHH
Confidence 4568888888888852 689999999999999999999999999999999999987632 134455
Q ss_pred hHHHHHHHcc
Q 010169 397 DLGSTFVNRM 406 (516)
Q Consensus 397 ~l~~~~l~~m 406 (516)
++.+.+..++
T Consensus 66 ~~~~ll~~Hl 75 (77)
T smart00151 66 EMNKLLTPHL 75 (77)
T ss_pred HHHHHHHHHc
Confidence 6665554444
No 20
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=98.25 E-value=1.2e-06 Score=71.83 Aligned_cols=55 Identities=35% Similarity=0.427 Sum_probs=46.0
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeee
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~ 60 (516)
|.|||+... +.|++|++|.|...+ ..++|+|++.||+++|.. ..+|+++++.|++
T Consensus 20 ~~~GV~~~~---~~f~~gd~V~i~~~~-g~~ia~G~a~~ss~ei~~-~~~g~~~~~~~~l 74 (74)
T PF01472_consen 20 FAPGVVEVD---GDFRKGDEVAIVDED-GEVIAVGRANMSSEEIKK-MKKGKAVKIRHVL 74 (74)
T ss_dssp EGGGEEEEE---TT--TTSEEEEEETT-SSEEEEEEESSTHHHHHH-HSSSEEEEEEEEC
T ss_pred chHHhEECC---CCcCCCCEEEEEcCC-CeEEEEEEEecCHHHHHH-HcCCcEehhhhhC
Confidence 689998643 579999999999885 789999999999999964 5599999999985
No 21
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=97.29 E-value=0.00024 Score=58.71 Aligned_cols=57 Identities=28% Similarity=0.460 Sum_probs=43.3
Q ss_pred EEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHhc
Q 010169 318 EVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFK 380 (516)
Q Consensus 318 ~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~~ 380 (516)
+.|+++..+..+ +|.+. +|++||...|++||+.|||.+++|++.|..|+.|..++..
T Consensus 3 k~~~ls~~L~~~---lg~~~---~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~ 59 (76)
T PF02201_consen 3 KRFKLSPELAEF---LGEDE---LSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGK 59 (76)
T ss_dssp EEEHHHHHHHHH---TT-SC---EEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHT
T ss_pred CCccCCHHHHHH---hCCCC---CCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCC
Confidence 344444433333 34433 8999999999999999999999999999999999987653
No 22
>PRK13795 hypothetical protein; Provisional
Probab=96.88 E-value=0.0016 Score=73.97 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=47.6
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeee
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~ 60 (516)
|.|||+... ++|++|+.|+|.... ..++|||++.||+++|. ...+|+||++.|..
T Consensus 146 ~~~GI~~~~---~~i~~gd~V~I~~e~-g~~vavG~a~~s~~e~~-~~~kG~~Vkvr~~~ 200 (636)
T PRK13795 146 LAPGVVEAD---LDIKKGDEVVVVTED-GEVVGVGRAKMDGDDMI-KRFRGRAVKVRKSG 200 (636)
T ss_pred cCCceEEEe---CCCCCCCEEEEEeCC-CCEEEEEEeccCHHHHh-hccCCeEEEEEEcc
Confidence 789998643 589999999999763 56899999999999994 58999999999976
No 23
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=96.83 E-value=0.0037 Score=50.66 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=46.1
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcC-CcccEEEEEeeec
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAG-LRGKALRITHYYR 61 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g-~kGkaV~vlH~~g 61 (516)
|.||++... +.|.+|++|.|... +..++|+|.+.+++..+.... .+|.++++.|++.
T Consensus 20 ~~~~v~~~~---~~~~~g~~V~v~~~-~g~~vg~G~~~~~s~~~~~~~~~~g~~v~~~~~~~ 77 (77)
T smart00359 20 LAPGVVRVD---GGIKEGDVVVIVDE-KGEPLGIGLANMSSEEMARIKGEKGLAVKVRRAVM 77 (77)
T ss_pred ccceeEEEe---CCcCCCCEEEEEcC-CCCEEEEEEEeCCHHHHHHHhccCceEEEEEEecC
Confidence 567776443 36889999999966 568999999999999986433 7999999999863
No 24
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=96.81 E-value=0.0065 Score=51.60 Aligned_cols=65 Identities=31% Similarity=0.424 Sum_probs=50.9
Q ss_pred EEEEE-ecCCccceEEeccCCCCCCHHHHHHHHhhhcccc------eEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC
Q 010169 430 IVTER-RQGNKKMTKLSGLETFLMDPEALASELQKKFACS------TTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 502 (516)
Q Consensus 430 I~~e~-R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s------~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gi 502 (516)
|+... +.|++.+|.|...+. |...|.++|++.|.-. +.|.+. ...|.|+||+...|.++|.+ .|+
T Consensus 16 VY~~~k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~----~g~i~IkG~~~~~Vk~wL~~-~GF 87 (87)
T PF05046_consen 16 VYLDIKNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNEL----TGHIEIKGDHVEEVKKWLLE-KGF 87 (87)
T ss_pred EEEEEeCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeec----CCEEEEcCccHHHHHHHHHH-CcC
Confidence 34433 347899999999986 9999999999999643 345443 36899999999999999976 464
No 25
>PRK13794 hypothetical protein; Provisional
Probab=96.65 E-value=0.0033 Score=69.06 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=45.8
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEe
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITH 58 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH 58 (516)
|+|||+... ++|++|+.|+|...+ ..++|||++.||+++|. ...+|+||++-|
T Consensus 145 ~~~GV~~~~---~~i~~gd~V~Iv~~~-g~~iavG~a~~s~~ei~-~~~~G~~Vkvr~ 197 (479)
T PRK13794 145 LRPGVAEAS---EDIEEGDDVIILDEN-GDVVGVGRARMSYEEIV-NMEKGMVVKVRK 197 (479)
T ss_pred cCCceEEec---CCcCCCCEEEEEcCC-CcEEEEEEeecCHHHHH-hccCceEEEEEe
Confidence 789988543 689999999999765 45999999999999994 588999999988
No 26
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=96.14 E-value=0.013 Score=61.29 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=39.7
Q ss_pred CCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeeccc
Q 010169 15 FLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDL 63 (516)
Q Consensus 15 ~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~ 63 (516)
+..|+.|.|... +..++|||.+.||+++|.. ..+|+||++.|.|+|-
T Consensus 268 i~~gd~V~V~~~-~G~~LAIGea~~s~~ei~~-~~kG~vV~~~~~~~~~ 314 (322)
T TIGR00425 268 IEKGDTVAVITL-KGEAVAVGIALMSTKDIAN-ADKGVVADVKRVIMER 314 (322)
T ss_pred cCCCCEEEEEEC-CCEEEEEEEEecCHHHHhh-cCCcEEEEEEEEeeCC
Confidence 567888888765 3579999999999999954 6699999999999984
No 27
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]
Probab=95.39 E-value=0.013 Score=58.26 Aligned_cols=57 Identities=30% Similarity=0.362 Sum_probs=48.1
Q ss_pred EEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHh
Q 010169 317 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 379 (516)
Q Consensus 317 ~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~ 379 (516)
.+.|+++..+..|+.. .-.|+.|+-.-|++||+.|||.+++|++.|.+|+.|.+++.
T Consensus 122 ~~~~~lS~~La~ilG~------~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g 178 (237)
T COG5531 122 GEKVKLSPKLAAILGL------EPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLG 178 (237)
T ss_pred CCceecCHHHHHHhCC------CCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhC
Confidence 4567778777777632 34689999999999999999999999999999999998763
No 28
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=94.76 E-value=0.036 Score=55.56 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=42.7
Q ss_pred hhhhhhcCCCC-CCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHh
Q 010169 327 NPIFASVGADT-GRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 379 (516)
Q Consensus 327 ~~~f~~~~~~~-~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~ 379 (516)
.+|-..++... ...+++.|+-..|.+||+.|||.||.|++.|.=|+.|..+..
T Consensus 104 ~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~ 157 (240)
T KOG1946|consen 104 IPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFG 157 (240)
T ss_pred cccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhc
Confidence 34434443333 568999999999999999999999999999999999997543
No 29
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=94.74 E-value=0.056 Score=61.46 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=40.9
Q ss_pred CCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeec
Q 010169 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (516)
Q Consensus 13 ~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~g 61 (516)
+++++|+.|.|.... ..++|||++.||..+|. ...+|+||++=|...
T Consensus 592 ~~ir~gDeV~Vv~e~-~~~lavG~A~~~~~em~-~~~~G~avkvR~~~~ 638 (639)
T PRK13534 592 EEIRPYDEVLVVNED-DELLAYGKALLNGRELM-EFNYGLAVKVRGGVK 638 (639)
T ss_pred CCCCCCCEEEEEecC-CcEEEEEEEecCHHHHh-hcCCceEEEEeecCC
Confidence 568899999999764 68999999999999994 579999999988754
No 30
>PRK14724 DNA topoisomerase III; Provisional
Probab=91.18 E-value=0.34 Score=57.90 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=43.8
Q ss_pred EecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 319 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 319 ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
-|+++..+..|+ |. .-.|++|+-..|++||+.|||.+|.|++.|..|+.|-.++
T Consensus 915 ~~~ls~~La~~l---g~---~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vf 968 (987)
T PRK14724 915 GLKPSAALAAVI---GA---EPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVF 968 (987)
T ss_pred ccCCCHHHHHHh---CC---CcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHh
Confidence 455555555554 32 2489999999999999999999999999999999999754
No 31
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=90.44 E-value=1.1 Score=41.49 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=59.5
Q ss_pred chHhHHHHHHHccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccce
Q 010169 394 HKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACST 469 (516)
Q Consensus 394 ~r~~l~~~~l~~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~ 469 (516)
.-++|++|+.+.+...- +. -.+=+.|+.++..+ |+| |+|.||... .-+++-+.+.|.+-+++.+
T Consensus 6 ~Y~~lL~R~~~~lp~~~-----~~--~~R~~~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g 73 (138)
T PRK03988 6 DYEELLDRAYEKLPEKV-----FK--ESRFEVPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAG 73 (138)
T ss_pred CHHHHHHHHHHHCcccc-----CC--CcceeCCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCce
Confidence 35678888887663321 11 11223566666655 655 999998644 5678999999999999999
Q ss_pred EEecCCCCCCcEEEEcCCcHHHHHHHHHH
Q 010169 470 TVAELPGKKGQEVLIQGGVIADVAKHLVE 498 (516)
Q Consensus 470 sv~~~~g~k~~eV~vQGd~~~~V~~~L~~ 498 (516)
++ + +....|+|.+.....+-+..
T Consensus 74 ~i-~-----~~~lii~G~~~~~~i~~~L~ 96 (138)
T PRK03988 74 NI-E-----GGRLILQGKFSPRVINEKID 96 (138)
T ss_pred ee-c-----CCEEEEEEeeCHHHHHHHHH
Confidence 99 2 36899999976655553333
No 32
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=89.90 E-value=1.1 Score=41.05 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=56.9
Q ss_pred HhHHHHHHHccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEE
Q 010169 396 KDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTV 471 (516)
Q Consensus 396 ~~l~~~~l~~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv 471 (516)
++|++|+.+.+...- +. -.+=+.|+.++.++ |+| |+|.||... .-+++-+.+.|.+-+++.+++
T Consensus 3 ~~lL~R~~~~l~~~~-----~~--~~R~~mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i 70 (133)
T TIGR00311 3 EKLLERAIDQLPDEV-----FE--TKRFEVPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL 70 (133)
T ss_pred HHHHHHHHHHCcccc-----CC--CccccCCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee
Confidence 567788877664211 11 11224667777665 655 999998544 567899999999999999998
Q ss_pred ecCCCCCCcEEEEcCCcHHHHHH
Q 010169 472 AELPGKKGQEVLIQGGVIADVAK 494 (516)
Q Consensus 472 ~~~~g~k~~eV~vQGd~~~~V~~ 494 (516)
. +....|+|.+.....+
T Consensus 71 ~------~~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 71 E------GGRLILQGKFTHFLLN 87 (133)
T ss_pred c------CCEEEEEeecCHHHHH
Confidence 3 3589999997765544
No 33
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=89.86 E-value=0.48 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL 45 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~ 45 (516)
|.|||+.-. ..|++|++|.|... +..++|+|++.+|++++.
T Consensus 301 l~~Gi~~v~---g~f~~gd~V~i~~~-~g~~va~G~~~~~s~e~~ 341 (372)
T PRK05429 301 LPAGVTAVE---GDFSRGDVVRIVDP-DGREIARGLVNYSSDELR 341 (372)
T ss_pred CccchhheE---CcccCCCEEEEECC-CCCEEEEEEecCCHHHHH
Confidence 578988533 58999999999965 477899999999999985
No 34
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]
Probab=89.17 E-value=1.9 Score=46.28 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=48.3
Q ss_pred CcccEEEEEecCCC-Cchhhhhh-cCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 311 AKILEVTEVYKPSV-HVNPIFAS-VGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 311 ~~~~~v~~ly~p~~-~~~~~f~~-~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
...+.+.--|.|.. .+.|=|.. +|...+ |++.|-.+|..||+.|+|.++.++.+|..|..|.+++
T Consensus 195 ~ctIll~l~~~P~~fklsp~La~lLGi~t~---Trp~iI~alWqYIk~n~Lqd~~e~~~incD~~l~qif 261 (420)
T KOG2570|consen 195 RCTILLLLDYQPEEFKLSPRLANLLGIHTG---TRPDIVTALWQYIKTNKLQDPEDSDFINCDKALEQIF 261 (420)
T ss_pred ceEEEEeeccCCcccccCHHHHHHhhhccC---cchHHHHHHHHHHHHhccCCcccchhhcchHHHHHhh
Confidence 34455666677765 23333332 244332 7899999999999999999999999999999999874
No 35
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=87.76 E-value=1.8 Score=39.48 Aligned_cols=85 Identities=13% Similarity=0.226 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHhHhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCchhhHHHHHHHH
Q 010169 171 TEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWL 250 (516)
Q Consensus 171 ~e~~D~~l~~all~al~~~~~~~~LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl~~~~~~~~~~~ 250 (516)
.++...-|+..||.-|+.. -..=.+.+..||..||-- + .-+=|--|.|..|+.|+++|.++|.
T Consensus 14 i~~yS~eFe~~Fl~lLr~~--hg~krV~AN~vYnEyI~D-k---~HvHMNaT~W~sLT~FvkyLgr~G~----------- 76 (127)
T PF10357_consen 14 IDEYSEEFEKDFLRLLRRR--HGTKRVNANKVYNEYIQD-K---DHVHMNATRWTSLTEFVKYLGREGK----------- 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TSS-EEEHHHHHHHHTTS-S-------GGGSS-SSHHHHHHHHTTTTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCCeechhHHHHHHhcC-c---cceeecccccchHHHHHHHHhhCCe-----------
Confidence 4566677889999999863 345678999999999921 2 2566779999999999999999999
Q ss_pred HHhhccccceEEeeccCCCeeEEEEecCCCCcc
Q 010169 251 LIRRHLKSQISVKEDKYKKESMLFSVNRGHPDY 283 (516)
Q Consensus 251 ~~~~~~~~~i~~KE~~~~g~~~I~~vn~~hp~~ 283 (516)
++|.|. ..-..|.=|+++...+
T Consensus 77 ---------~~Vdet--ekg~~I~yID~~pe~l 98 (127)
T PF10357_consen 77 ---------CKVDET--EKGWFISYIDRSPETL 98 (127)
T ss_dssp ---------EEEEEE--TTEEEEEE--SSHHHH
T ss_pred ---------eEeecC--CCceEEEeeCCCHHHH
Confidence 999863 4578888888854443
No 36
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=86.26 E-value=0.92 Score=42.50 Aligned_cols=68 Identities=29% Similarity=0.452 Sum_probs=45.2
Q ss_pred ceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccc------eEEecCCCCCCcEEEEcCCcHHHHHHHHHHh
Q 010169 426 KTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACS------TTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 499 (516)
Q Consensus 426 ~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s------~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~ 499 (516)
-+|-....+| |+|.+|+|...+. |.-.|-++|+..+.-+ +-|.+. ...|.+-|||.+.|.++|.++
T Consensus 96 lPVYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~Vnel----sgqI~~~g~~v~~vr~~L~eK 167 (169)
T KOG4034|consen 96 LPVYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNEL----SGQIVLKGNHVDTVREWLQEK 167 (169)
T ss_pred cceEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhh----cceEEEeCChHHHHHHHHHHc
Confidence 3444444333 9999999999985 5555555555443221 223332 258999999999999999874
Q ss_pred cCC
Q 010169 500 FGI 502 (516)
Q Consensus 500 ~gi 502 (516)
|+
T Consensus 168 -GF 169 (169)
T KOG4034|consen 168 -GF 169 (169)
T ss_pred -cC
Confidence 64
No 37
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=83.24 E-value=4.7 Score=39.50 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=58.0
Q ss_pred hHhHHHHHHHccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceE
Q 010169 395 KKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTT 470 (516)
Q Consensus 395 r~~l~~~~l~~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~s 470 (516)
-++|++|+++.+... . +. -.+=..|+.++.++ |+| |+|.||... +-+++-+.+.|..-++++++
T Consensus 3 Y~~lL~r~~~~l~~~---~--~~--~~R~~~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~ 70 (201)
T PRK12336 3 YESLLDRAMEVLPEP---T--KS--GERFSIPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGK 70 (201)
T ss_pred HHHHHHHHHHHCCcc---c--CC--ccceecCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcce
Confidence 467888888776431 1 11 11223566666665 543 999998544 56789999999999999999
Q ss_pred EecCCCCCCcEEEEcCCcHHHHHHHHHH
Q 010169 471 VAELPGKKGQEVLIQGGVIADVAKHLVE 498 (516)
Q Consensus 471 v~~~~g~k~~eV~vQGd~~~~V~~~L~~ 498 (516)
+. +....|+|.+...-.+-+..
T Consensus 71 ~~------~~~~ii~G~~~~~~i~~~l~ 92 (201)
T PRK12336 71 IE------GGRAVFNGKFTEEDIQAAID 92 (201)
T ss_pred ec------CCEEEEEeeeCHHHHHHHHH
Confidence 83 35789999976655543333
No 38
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=81.51 E-value=3.7 Score=36.48 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=46.3
Q ss_pred cceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010169 425 LKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 494 (516)
Q Consensus 425 ~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~ 494 (516)
.|+.++..+ |+| -|++.||... +-+++-+.+.|.+-+++++++.. + ....|+|.+...-.+
T Consensus 6 ~p~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~-~rlii~G~~~~~~i~ 70 (110)
T smart00653 6 MPPPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----K-GRLIVNGRFTPKKLQ 70 (110)
T ss_pred cCCCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----C-CeEEEEEeeCHHHHH
Confidence 456666655 554 6899998544 56799999999999999999942 1 689999997665544
No 39
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=81.13 E-value=2.8 Score=43.50 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=28.6
Q ss_pred CCCeEEEEEeecChHHHHhcCCcccEEEEEeee
Q 010169 28 NPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (516)
Q Consensus 28 ~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~ 60 (516)
+..++|||.+.++++++.. ..+|+||++.|.+
T Consensus 268 ~G~~LAIG~~~~ss~el~~-~~kG~~vk~~~~~ 299 (300)
T PRK04270 268 KGELVALGKALMDSDEILK-AEKGIVVDLERVF 299 (300)
T ss_pred CCcEEEEEEEccCHHHHHh-cCCceEEEEEEee
Confidence 4578999999999999964 5999999999986
No 40
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=80.95 E-value=1.9 Score=45.83 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=34.3
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL 45 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~ 45 (516)
|.|||+.-. ..|.+|++|.|.... ..++|+|.+.+|++++.
T Consensus 293 l~~Gi~~v~---g~F~~gd~v~i~~~~-~~~ia~g~~~y~s~~~~ 333 (363)
T TIGR01027 293 LPAGIVGVE---GNFSRGEVVEILNPE-GQDIGRGLVNYSSDELE 333 (363)
T ss_pred CCccceeeE---CcccCCCEEEEECCC-CCEEEEEEecCCHHHHH
Confidence 568887433 589999999999654 68999999999999985
No 41
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=7.7 Score=36.28 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEE
Q 010169 12 LPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRI 56 (516)
Q Consensus 12 ~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~v 56 (516)
.|++.+|+=|.|..+ +..-+|||.+.+|..+|. .-..|.||++
T Consensus 108 D~~iR~~dEvlVVne-~d~LlAvGra~ls~~E~~-~~~~G~AVkV 150 (155)
T COG1370 108 DEEIRAGDEVLVVNE-DDELLAVGRALLSGAEMR-EFERGMAVKV 150 (155)
T ss_pred CcccCCCCeEEEECC-CCcEEEeeeEeecHHHHh-hccccEEEEE
Confidence 378999999999855 456799999999999994 5779999987
No 42
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=67.06 E-value=7.1 Score=35.47 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHH
Q 010169 423 GALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADV 492 (516)
Q Consensus 423 G~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V 492 (516)
=+.|++.+..+ |+ .=|+|.||... +-+++-+++.|..-+++++++... ....|+|.+...-
T Consensus 17 ~kmP~~~v~~e---G~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~-----~~lii~G~~~~~~ 81 (125)
T PF01873_consen 17 YKMPPPQVKIE---GK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGK-----GRLIINGRFSSKQ 81 (125)
T ss_dssp -CCCT--EEEE---TS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETT-----TEEEEESSSSCCH
T ss_pred eecCCCeEEEE---cc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCC-----CEEEEEEecCHHH
Confidence 35677777765 53 66889998644 568999999999999999999531 6899999965433
No 43
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=64.24 E-value=8.6 Score=42.44 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=28.0
Q ss_pred CCCeEEEEEeecChHHHHhcCCcccEEEEEeee
Q 010169 28 NPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60 (516)
Q Consensus 28 ~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~ 60 (516)
++...+||++.||..+| +...||.||++=|+.
T Consensus 487 ~~~v~gVGrA~msg~eM-~~akkGiaV~VR~~~ 518 (519)
T COG1549 487 GGEVRGVGRAVMSGREM-VEAKKGIAVRVRRRK 518 (519)
T ss_pred CCeEEEEeeeecChHHh-cccCCceEEEEEecc
Confidence 45678999999999999 568999999998875
No 44
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=58.91 E-value=13 Score=29.65 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhHhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCc
Q 010169 175 DAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGL 239 (516)
Q Consensus 175 D~~l~~all~al~~~~~~~~LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl 239 (516)
+..+...+..+|...-.... ++..|.|-..+.--+ | .+|.+.==|++++.||+.|. ++
T Consensus 3 ~~~~~~~l~~ll~~~~~~~g-~v~ls~l~~~~~~~~-~---~f~~~~yG~~~l~~ll~~~~--~~ 60 (74)
T PF12872_consen 3 LEELKKLLRELLESQKGEDG-WVSLSQLGQEYKKKY-P---DFDPRDYGFSSLSELLESLP--DV 60 (74)
T ss_dssp -HHHHHHHHHHHHHTCTTTS-SEEHHHHHHHHHHHH-T---T--TCCTTSSSHHHHHHT-T--TT
T ss_pred HHHHHHHHHHHHHhCcCCCc-eEEHHHHHHHHHHHC-C---CCCccccCCCcHHHHHHhCC--Ce
Confidence 34566667777743222122 888888877766554 4 37888889999999998765 77
No 45
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=57.97 E-value=22 Score=34.31 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHHHHhHhcCCCCCCCCChhhhhhhccc----CCCCCCCceeeeccccccHHHHHHHHHHCCchhhHHH
Q 010169 170 TTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHIL----PCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLM 245 (516)
Q Consensus 170 ~~e~~D~~l~~all~al~~~~~~~~LP~~~S~f~s~~il----p~~P~g~~ldiKKSS~KKlskFLk~~~K~gl~~~~~~ 245 (516)
+..+..++.+.+|..|+..-.....|-.-+..+|.-|-| |+.|. ..|.|--++|+.+.+|.+.+...|. .+..
T Consensus 42 ~~~e~~~f~~~~l~~~~~y~~~~~s~~~Rvg~lYlLY~LY~tQp~~~~-~kIrisl~~~~~l~~~~~~~~~~~~--~d~~ 118 (194)
T PF09808_consen 42 NQSELIEFMEELLQIALKYFLPPRSLQERVGGLYLLYALYNTQPCKPK-VKIRISLSDWEELLDFVQELKEEQH--LDAY 118 (194)
T ss_pred ChHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhcCCCCCc-cceEECHHHHHHHHHHHHHHHHccc--hHHH
Confidence 445677788888888887656677888888888888774 55554 4788888999999999999999998 4888
Q ss_pred HHHHHHHhhccccceEEeeccCCCeeEEEEecCCC
Q 010169 246 LVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGH 280 (516)
Q Consensus 246 ~~~~~~~~~~~~~~i~~KE~~~~g~~~I~~vn~~h 280 (516)
.+||-|+. .+...++.++..+
T Consensus 119 ~i~~kL~~--------------~~AF~f~a~~~~~ 139 (194)
T PF09808_consen 119 YIFRKLLQ--------------DKAFHFTAMDSPL 139 (194)
T ss_pred HHHHHHHH--------------cCCEEEEeecccc
Confidence 89998833 4567777766433
No 46
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=49.74 E-value=15 Score=43.54 Aligned_cols=59 Identities=22% Similarity=0.421 Sum_probs=46.2
Q ss_pred cEEEEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 314 LEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 314 ~~v~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
..+...|.|+..+..+... .-.++.++...|.+||+.++|.++.+++.|.-|+-|..++
T Consensus 782 ~~~~~~~~~S~~La~~~g~------~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf 840 (860)
T PRK06319 782 KRAGPLYTPSPALAAMIGA------EPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVI 840 (860)
T ss_pred cccccccccccccccccCc------CccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhh
Confidence 3455557787766666422 3478899999999999999999999999999999996533
No 47
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=33.67 E-value=90 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCc
Q 010169 195 LPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGL 239 (516)
Q Consensus 195 LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl 239 (516)
=+...+.+|..|--=|.. .+++.=+|..+..+|..++..|+
T Consensus 21 ~~~~~~~vy~~Y~~~c~~----~~~~~l~~~~~~~~l~~L~~~gl 61 (87)
T cd08768 21 EEATTGEVYEVYEELCEE----IGVDPLTQRRISDLLSELEMLGL 61 (87)
T ss_pred CCccHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHHHHcCC
Confidence 457889999988865543 36777889999999999999999
No 48
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=28.89 E-value=58 Score=28.30 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.1
Q ss_pred cccccHHHHHHHHHHCCchhhHHHHHHHHHHhhccccceEEeeccCCCeeEEEE
Q 010169 222 SSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFS 275 (516)
Q Consensus 222 SS~KKlskFLk~~~K~gl~~~~~~~~~~~~~~~~~~~~i~~KE~~~~g~~~I~~ 275 (516)
.+|+.+.++++.+.+.|+ +..++.+.++...+|.
T Consensus 43 lny~~~~~yi~~L~~~Gl--------------------i~~~~~~~~~~y~lT~ 76 (95)
T COG3432 43 LNYKRAQKYIEMLVEKGL--------------------IIKQDNGRRKVYELTE 76 (95)
T ss_pred cCHHHHHHHHHHHHhCCC--------------------EEeccCCccceEEECh
Confidence 479999999999999998 5655434455777775
No 49
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=23.83 E-value=95 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH
Q 010169 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL 45 (516)
Q Consensus 13 ~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~ 45 (516)
..|.+|++|.|... ....+|.|.+..|++|+.
T Consensus 306 g~F~~gd~v~i~~~-~g~~~~rg~~~y~s~~~~ 337 (368)
T PRK13402 306 GDFSVGDTILVRKG-DGTKLAKGKSNYSSCLLN 337 (368)
T ss_pred CEecCCCEEEEECC-CCCEEEEEEccCCHHHHH
Confidence 47999999999954 457899999999999985
No 50
>KOG0632 consensus Phytochelatin synthase [Inorganic ion transport and metabolism]
Probab=21.69 E-value=59 Score=33.85 Aligned_cols=27 Identities=37% Similarity=0.649 Sum_probs=23.4
Q ss_pred CCCCCCC-ceeeeccccccHHHHHHHHH
Q 010169 209 PCRPSGI-TLDIKKSSHKKLTKWLQAKS 235 (516)
Q Consensus 209 p~~P~g~-~ldiKKSS~KKlskFLk~~~ 235 (516)
|.||+|. ++..||-||..++|+|++--
T Consensus 218 ~h~~~gl~tl~lkk~sw~~i~k~lk~~v 245 (388)
T KOG0632|consen 218 PHREPGLYTLSLKKESWINIAKYLKEDV 245 (388)
T ss_pred CCCCCceEEEEeccccHHHHHHHHHHhh
Confidence 5677787 99999999999999998854
Done!