Query 010169
Match_columns 516
No_of_seqs 204 out of 1114
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 99.8 2.5E-20 8.4E-25 162.3 11.1 100 405-511 8-107 (108)
2 2xzm_F EIF1; ribosome, transla 99.8 3.5E-20 1.2E-24 159.3 10.1 84 425-511 16-100 (101)
3 2if1_A EIF1, SUI1; translation 99.8 1.8E-19 6.1E-24 160.3 7.4 103 404-510 21-124 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.7 1.1E-17 3.8E-22 146.7 4.4 79 425-511 30-110 (116)
5 3r90_A Malignant T cell-amplif 99.5 2.3E-15 7.7E-20 143.3 4.5 69 1-70 112-180 (188)
6 1q7h_A Conserved hypothetical 99.3 1.4E-12 4.6E-17 120.0 4.3 64 1-69 90-153 (153)
7 3d79_A PUA domain, putative un 99.3 2.4E-12 8.2E-17 121.5 4.9 65 1-69 114-178 (179)
8 2cx0_A Hypothetical protein AP 99.2 5.5E-12 1.9E-16 119.9 3.6 65 1-68 112-179 (187)
9 3zv0_C H/ACA ribonucleoprotein 98.6 5.3E-08 1.8E-12 92.4 6.4 64 1-69 95-163 (195)
10 2q07_A Uncharacterized protein 98.2 8.5E-07 2.9E-11 90.2 5.1 57 1-64 245-301 (306)
11 1v32_A AT5G08430, hypothetical 97.6 8.1E-05 2.8E-09 63.7 5.5 57 322-378 16-72 (101)
12 1uhr_A SWI/SNF related, matrix 97.2 0.00021 7.1E-09 60.2 4.0 54 319-378 11-64 (93)
13 1v31_A Hypothetical protein RA 97.1 0.00027 9.1E-09 59.6 3.2 54 319-378 11-64 (93)
14 3u28_A H/ACA ribonucleoprotein 94.5 0.049 1.7E-06 56.9 6.5 63 2-69 287-354 (400)
15 2p38_A Protein involved in rib 94.1 0.047 1.6E-06 50.5 4.8 41 15-64 124-164 (166)
16 1iq8_A Archaeosine tRNA-guanin 89.5 0.39 1.3E-05 52.7 6.1 33 28-61 550-582 (582)
17 2j5v_A Glutamate 5-kinase; pro 81.5 1.1 3.7E-05 46.3 4.3 41 1-45 296-336 (367)
18 2d74_B Translation initiation 80.9 1.6 5.3E-05 39.6 4.6 60 424-494 31-94 (148)
19 1sqw_A Saccharomyces cerevisia 80.8 3.9 0.00013 38.4 7.4 45 13-58 123-167 (188)
20 2v1n_A KIN17, protein KIN homo 78.7 5.2 0.00018 34.4 6.9 81 171-279 16-96 (111)
21 1nee_A EIF-2-beta, probable tr 77.8 0.8 2.7E-05 41.0 1.6 60 424-494 29-92 (138)
22 1z1m_A Ubiquitin-protein ligas 75.5 2.7 9.2E-05 36.4 4.2 63 315-378 23-86 (119)
23 2e9h_A EIF-5, eukaryotic trans 73.6 3 0.0001 38.1 4.3 80 410-494 10-93 (157)
24 2z5s_M MDM4 protein, zebrafish 73.3 2.5 8.6E-05 37.3 3.5 59 319-378 23-82 (140)
25 1ycq_A MDM2, MDM2; anti-oncoge 67.3 3.7 0.00013 34.9 3.2 62 316-378 8-70 (107)
26 1k8b_A EIF-2-beta, probable tr 62.7 4.6 0.00016 30.1 2.6 45 434-486 3-51 (52)
27 3dac_M MDM4 protein; MDMX, MDM 62.6 4.1 0.00014 35.7 2.6 61 317-378 22-83 (130)
28 3fea_A MDM4 protein; HDMX, HDM 60.2 3.5 0.00012 34.7 1.7 60 318-378 14-74 (100)
29 2aus_C Pseudouridine synthase; 58.3 19 0.00063 36.6 7.1 46 14-61 280-325 (334)
30 2axi_A Ubiquitin-protein ligas 52.4 3.7 0.00013 35.3 0.6 61 317-378 9-70 (115)
31 2g2k_A EIF-5, eukaryotic trans 51.7 5.6 0.00019 36.7 1.7 70 420-494 13-86 (170)
32 2apo_A Probable tRNA pseudouri 40.3 52 0.0018 33.7 7.0 47 14-62 299-345 (357)
33 1wn8_A Kalata B3/B6, oantr pro 23.9 48 0.0016 20.7 2.1 19 221-239 3-21 (26)
34 3hyi_A Protein DUF199/WHIA; la 20.4 3.1E+02 0.011 27.1 8.5 67 444-510 97-165 (295)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.5e-20 Score=162.30 Aligned_cols=100 Identities=24% Similarity=0.442 Sum_probs=87.2
Q ss_pred ccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEE
Q 010169 405 RMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLI 484 (516)
Q Consensus 405 ~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~v 484 (516)
.+.||+.. ++ ..+|..++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. +.+|+|
T Consensus 8 ~~dpf~~~--~~---~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~-g~~I~i 80 (108)
T 2ogh_A 8 SFDPFADT--GD---DETATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEM-GEIIQL 80 (108)
T ss_dssp CCCCCCCC--CC---CCCCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTS-SCEEEE
T ss_pred CCCccccc--cc---cccCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCC-ceEEEE
Confidence 34566554 11 226888999999999999999999999997 999999999999999999999998885 789999
Q ss_pred cCCcHHHHHHHHHHhcCCCCccEEEcc
Q 010169 485 QGGVIADVAKHLVEQFGIPKRYIEVLD 511 (516)
Q Consensus 485 QGd~~~~V~~~L~~~~gip~k~I~~~~ 511 (516)
||||++.|.++|.++..+|++||++..
T Consensus 81 QGD~r~~v~~~L~~~g~~~~~~I~vhg 107 (108)
T 2ogh_A 81 QGDQRAKVCEFMISQLGLQKKNIKIHG 107 (108)
T ss_dssp ESSCHHHHHHHHHHHHTSCCSCEEECC
T ss_pred cCCHHHHHHHHHHHcCCCCHHHEEEcC
Confidence 999999999999987666999999864
No 2
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.82 E-value=3.5e-20 Score=159.25 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=78.0
Q ss_pred cceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC-C
Q 010169 425 LKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI-P 503 (516)
Q Consensus 425 ~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gi-p 503 (516)
-++|+|++++|+|||.||+|+||+ |++|+++||++|+++||||+||.+.|+. +.+|+|||||++.|.++|.++ |+ |
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~-g~~I~iQGD~r~~v~~~L~~~-G~~~ 92 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEG-KKVIKLNGDHRNQIQQFLSEE-GIAA 92 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTT-CEEEEEESCCHHHHHHHHHHH-SSSC
T ss_pred CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCC-ceEEEEeCcHHHHHHHHHHHc-CCCC
Confidence 468999999999999999999999 9999999999999999999999988774 689999999999999999875 88 9
Q ss_pred CccEEEcc
Q 010169 504 KRYIEVLD 511 (516)
Q Consensus 504 ~k~I~~~~ 511 (516)
+.+|++..
T Consensus 93 ~~~I~vhg 100 (101)
T 2xzm_F 93 VDNITIHG 100 (101)
T ss_dssp TTTEEECC
T ss_pred HHHEEEcC
Confidence 99998753
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.78 E-value=1.8e-19 Score=160.32 Aligned_cols=103 Identities=28% Similarity=0.494 Sum_probs=87.9
Q ss_pred HccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEE
Q 010169 404 NRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVL 483 (516)
Q Consensus 404 ~~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~ 483 (516)
..|.||+....++. ....|..++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. +.+|+
T Consensus 21 ~~fdpfa~~~~~~~-~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~-g~~I~ 97 (126)
T 2if1_A 21 HSFDPFADASKGDD-LLPAGTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEY-GEVIQ 97 (126)
T ss_dssp CCCCTTSSCCCCSS-CCSCSCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTT-SSEEE
T ss_pred CCCCchhhhccccc-cccCCCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCC-ccEEE
Confidence 35667776654332 1234788999999999999999999999998 999999999999999999999988764 68999
Q ss_pred EcCCcHHHHHHHHHHhcCC-CCccEEEc
Q 010169 484 IQGGVIADVAKHLVEQFGI-PKRYIEVL 510 (516)
Q Consensus 484 vQGd~~~~V~~~L~~~~gi-p~k~I~~~ 510 (516)
|||||++.|.++|.++ |+ ++++|++.
T Consensus 98 IQGD~r~~I~~~L~~~-G~~~~~~I~vh 124 (126)
T 2if1_A 98 LQGDQRKNICQFLVEI-GLAKDDQLKVH 124 (126)
T ss_dssp ESBCCHHHHHHHHHHH-TSSCTTTEECC
T ss_pred EcCCHHHHHHHHHHHc-CCCChhhEEee
Confidence 9999999999999875 88 79999874
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.68 E-value=1.1e-17 Score=146.70 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=72.2
Q ss_pred cceEEEEEEEecCC--ccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHHHhcCC
Q 010169 425 LKTIQIVTERRQGN--KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 502 (516)
Q Consensus 425 ~~~I~I~~e~R~g~--K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~~~~gi 502 (516)
..+|+|+++ |+|| |.||+|+||+.|++|+++||++|+++||||+||. +.+|+|||||++.|.++|.+ .|+
T Consensus 30 ~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk------~~~IeiQGD~r~~i~~~L~~-~G~ 101 (116)
T 1d1r_A 30 DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVK------DGVIEIQGDKRDLLKSLLEA-KGM 101 (116)
T ss_dssp CCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCC------SSCEEECSCCHHHHHHHHHH-HTC
T ss_pred CCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEc------CCEEEEeCcHHHHHHHHHHH-cCC
Confidence 468999998 7666 9999999999999999999999999999999994 47999999999999999976 699
Q ss_pred CCccEEEcc
Q 010169 503 PKRYIEVLD 511 (516)
Q Consensus 503 p~k~I~~~~ 511 (516)
+.++|+.++
T Consensus 102 ~vk~i~~~~ 110 (116)
T 1d1r_A 102 KVKLAGGLE 110 (116)
T ss_dssp EECCCCCCC
T ss_pred Ccceecccc
Confidence 999998765
No 5
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=143.34 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=63.3
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccCCC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEG 70 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g~~ 70 (516)
|+|||+.+.+.+++|++|++|+|+..+++.|+|||+++||++||.. ..||+||+++|++||+||++++.
T Consensus 112 m~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~-~~kG~aV~v~H~~~D~LW~~~~~ 180 (188)
T 3r90_A 112 MCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEK-VNKGIGIENIHYLNDGLWHMKTY 180 (188)
T ss_dssp ETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHH-HCCSEEEEEEEETTSHHHHHCBS
T ss_pred ccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhh-cCCcEEEEEEEEECchhhhcCCc
Confidence 8999998776667899999999999989999999999999999954 68999999999999999999874
No 6
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.28 E-value=1.4e-12 Score=119.98 Aligned_cols=64 Identities=36% Similarity=0.392 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccCC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVE 69 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g~ 69 (516)
|.|||+... ++|++|++|+|... +..|+|+|++.||++||. .+.+|+||+++|++||+||++++
T Consensus 90 l~~GV~~~~---~~~~~gd~V~V~~~-~g~~ia~G~~~~ss~e~~-~~~~G~~v~v~h~~~D~lw~~~~ 153 (153)
T 1q7h_A 90 FAPGIVSMD---DSIRKGDMIFVKSS-KGYFIAVGMAEMDAGEVM-ATKRGKAARIIHFPGDELIRAFP 153 (153)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEEET-TSCEEEEEEESSCHHHHH-HHCCSEEEEEEECTTSHHHHHCC
T ss_pred CccccCccc---CceeCCCEEEEEEC-CCCEEEEEEEecCHHHHH-hcCCCeEEEEEEEcCCEEEEecC
Confidence 789998643 58999999999988 789999999999999995 47899999999999999999874
No 7
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=99.26 E-value=2.4e-12 Score=121.53 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=58.5
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccCC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVE 69 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g~ 69 (516)
|+|||+... ++|++|++|+|...++..++|||++.||++||. .+.+|+||+++|++||+||.++.
T Consensus 114 ~~~GV~~~~---g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~-~~~kG~av~~~H~~~D~Lw~~~~ 178 (179)
T 3d79_A 114 MAPGIVDAD---EGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMK-EKNRGKAVKVIHHARDKIWEVTA 178 (179)
T ss_dssp EGGGEEEEC---TTCCTTCEEEEEETTTCCEEEEEEESSCHHHHH-HCSSSEEEEEEEETTSHHHHHHC
T ss_pred CCCcEEEcc---CCccCCCEEEEEECCCCeEEEEEEEEcCHHHHH-hcCCceEEEEEEEeCCEEEEeec
Confidence 789998543 589999999999988889999999999999995 58999999999999999998753
No 8
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=99.19 E-value=5.5e-12 Score=119.90 Aligned_cols=65 Identities=29% Similarity=0.457 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHH-H--hcCCcccEEEEEeeecccccccC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEA-L--KAGLRGKALRITHYYRDLLWGSV 68 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~-~--~~g~kGkaV~vlH~~gD~LW~~g 68 (516)
|+|||+... ++|.+|++|+|...+++.++|||.+.||++|| . ..+.+|+||+++|++||+||.++
T Consensus 112 l~~GV~~~~---g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~~~~~~~kG~av~v~H~~gD~Lw~~~ 179 (187)
T 2cx0_A 112 MIPGVVGVE---GSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRVHRLGDALWELA 179 (187)
T ss_dssp EGGGEEEEE---ECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSEEEEEEEETTSHHHHHH
T ss_pred CCCccEeCC---CCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhHHHhccCCceEEEEEEEcCCeEEhhh
Confidence 789998643 58999999999998888999999999999998 2 35899999999999999999874
No 9
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.3e-08 Score=92.44 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecc-----cccccCC
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD-----LLWGSVE 69 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD-----~LW~~g~ 69 (516)
|.|||+... +.|.+|++|+|... +..++|+|++.||+++|.. ..+|+||++.|++.| .+|.+|+
T Consensus 95 l~pGV~~v~---g~F~~GD~V~V~~~-~G~~IAvG~a~~sS~Ei~~-~~kG~aVkv~rVimd~~~Yp~~W~~gp 163 (195)
T 3zv0_C 95 MIPGLLRYE---EGIELYDEIVLITT-KGEAIAVAIAQMSTVDLAS-CDHGVVASVKRCIMERDLYPRRWGLGP 163 (195)
T ss_dssp EGGGEEEEE---TTCCTTCEEEEECT-TCCEEEEEEESSCHHHHHH-CSSSEEEEEEEECBCTTSSCCCCSSCC
T ss_pred cCCCcEecC---CCcCCCCEEEEEcC-CCCEEEEEEEcCCHHHHhh-cCCcEEEEEEEEEeCCCCcCcccccCc
Confidence 679998543 58999999999976 4569999999999999954 679999999999999 9999996
No 10
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=98.21 E-value=8.5e-07 Score=90.16 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccc
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLL 64 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~L 64 (516)
|+|||+... +++++|+.|+| . +..++|||++.||+++| ....+|+||++.|+++|+-
T Consensus 245 ~~pGv~~~~---~~i~~gd~V~V--~-~g~~vavG~a~ms~~em-~~~~kG~aV~v~~~~~~~~ 301 (306)
T 2q07_A 245 FAGGVLRAD---EKIRPNDVVVF--H-NSRIFGVGLAAMSGKEM-AGSEKGIAINVKRKFSEGH 301 (306)
T ss_dssp EGGGEEEEC---TTCCTTCEEEE--E-CSSCEEEEEESSCHHHH-SCC--CEEEEEEEEEC---
T ss_pred eCCeeEeCC---CCcCCCCEEEE--E-CCEEEEEEEEeeCHHHH-hhcCCceEEEEEEEccCCc
Confidence 789999654 57999999999 3 36899999999999999 4578999999999999974
No 11
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=97.56 E-value=8.1e-05 Score=63.67 Aligned_cols=57 Identities=30% Similarity=0.416 Sum_probs=49.3
Q ss_pred CCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 322 PSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 322 p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
|+..+..|+..+|.+....+|+++|-..|++||+.|||.+|.||+.|.-|+-|..++
T Consensus 16 ~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lF 72 (101)
T 1v32_A 16 GSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF 72 (101)
T ss_dssp SCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHT
T ss_pred CCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHH
Confidence 444567777666877667899999999999999999999999999999999999754
No 12
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=97.23 E-value=0.00021 Score=60.21 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=46.5
Q ss_pred EecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 319 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 319 ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
-|+++..+..|+ |. ...|++||-..|++||+.|||.++.||+.|..|+.|..++
T Consensus 11 ~~~lS~~La~~l---G~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lf 64 (93)
T 1uhr_A 11 QFKLDPRLARLL---GI---HTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIF 64 (93)
T ss_dssp EEEECTTHHHHT---CC---SEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHT
T ss_pred ccCcCHHHHHHH---CC---CccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHh
Confidence 477777777775 32 3589999999999999999999999999999999999754
No 13
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=97.09 E-value=0.00027 Score=59.56 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=45.6
Q ss_pred EecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHH
Q 010169 319 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDAL 378 (516)
Q Consensus 319 ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l 378 (516)
.|+++..+..|+ |. .-.|++||-..|++||+.|||.++.||+.|..|+.|..++
T Consensus 11 ~~~lS~~La~~l---G~---~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lf 64 (93)
T 1v31_A 11 KFKLSTALMDVL---GI---EVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF 64 (93)
T ss_dssp CEECCHHHHHHS---CC---SEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHS
T ss_pred ccccCHHHHHHH---CC---CccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHh
Confidence 467777666665 33 2579999999999999999999999999999999999754
No 14
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=94.46 E-value=0.049 Score=56.94 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecc-----cccccCC
Q 010169 2 FPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD-----LLWGSVE 69 (516)
Q Consensus 2 ~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD-----~LW~~g~ 69 (516)
+||++... ..++.|+.|+|... ++.++|||++.|++++|. ...+|++|++-..+.| ..|-+|+
T Consensus 287 ~pgVl~~~---~~i~~gd~VvVvt~-kGelLAIG~A~mss~em~-~~~~G~vvk~~rV~m~~~~yp~~w~~~~ 354 (400)
T 3u28_A 287 IPGLLRYE---EGIELYDEIVLITT-KGEAIAVAIAQMSTVDLA-SCDHGVVASVKRCIMERDLYPRRWGLGP 354 (400)
T ss_dssp GGGEEEEC---TTCCTTCEEEEECT-TCCEEEEEEESSCHHHHH-HCSSSEEEEEEEECSCTTSSCCCC----
T ss_pred cCcccccc---ccCCCCCEEEEEeC-CCcEEEEEEEEeCHHHHh-hcCCcEEEEEEEEeecCCCCccccCcCh
Confidence 46665321 35778999988865 678999999999999995 4789999999999987 5688875
No 15
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=94.05 E-value=0.047 Score=50.51 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=33.2
Q ss_pred CCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccc
Q 010169 15 FLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLL 64 (516)
Q Consensus 15 ~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~L 64 (516)
++.|+.|.|... +..|+|+|++++| .+|++|..+|..|=.|
T Consensus 124 ~~~~~~VvV~~~-~~~pLG~G~a~~s--------~~gkvv~n~~dvGeYL 164 (166)
T 2p38_A 124 WQGSKRVVVLND-LGDIIGIGLINPK--------SDRRFIKNLKDVGEFL 164 (166)
T ss_dssp CSSCSEEEEECT-TSCEEEEEEECTT--------CSTTSEEEEEC-----
T ss_pred ecCCCEEEEEEC-CCcEEEEEEEEEC--------CCCEEEEEcccceeee
Confidence 488999999977 8899999999998 7999999999999665
No 16
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=89.51 E-value=0.39 Score=52.70 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.6
Q ss_pred CCCeEEEEEeecChHHHHhcCCcccEEEEEeeec
Q 010169 28 NPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (516)
Q Consensus 28 ~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~g 61 (516)
++.++|||.+.||++||. ...||+||++.|+++
T Consensus 550 ~g~~ia~G~a~~ss~ei~-~~~kG~aV~v~~~~~ 582 (582)
T 1iq8_A 550 NDELLATGQALLSGREMI-VFQYGRAVKVRKGVE 582 (582)
T ss_dssp TCCEEEEEEESSCHHHHH-HCCSSEEEEEEEECC
T ss_pred CCCEEEEEEEeeCHHHHH-hcCCceEEEEEeccC
Confidence 678999999999999995 478999999999863
No 17
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=81.54 E-value=1.1 Score=46.30 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHH
Q 010169 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEAL 45 (516)
Q Consensus 1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~ 45 (516)
|.|||+.-. ..|.+|++|.|... +..++|+|.+.+|++|+.
T Consensus 296 l~~Gi~~v~---g~F~~gd~V~i~~~-~g~~ia~G~~~y~s~e~~ 336 (367)
T 2j5v_A 296 LPKGIKSVT---GNFSRGEVIRICNL-EGRDIAHGVSRYNSDALR 336 (367)
T ss_dssp CGGGEEEEE---SCCCTTCEEEEEET-TCCEEEEEECSSCHHHHH
T ss_pred CCcccEEEE---CcccCCCEEEEECC-CCCEEEEEEecCCHHHHH
Confidence 567887433 58999999999987 678999999999999985
No 18
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=80.85 E-value=1.6 Score=39.57 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=46.0
Q ss_pred CcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010169 424 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 494 (516)
Q Consensus 424 ~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~ 494 (516)
+.|++++.++ |+| |+|.||... .=+++-+.+.|..-+++++++. +...+|+|.+...-.+
T Consensus 31 kmP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G~~~~~~i~ 94 (148)
T 2d74_B 31 EVPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE------GRRVVLQGRFTPYLIA 94 (148)
T ss_dssp CCCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE------TTEEEESSCCCHHHHH
T ss_pred ecCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec------CCEEEEEeeeCHHHHH
Confidence 4566666655 654 999998644 5678889999999999999995 3589999997655444
No 19
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=80.79 E-value=3.9 Score=38.40 Aligned_cols=45 Identities=11% Similarity=0.007 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEe
Q 010169 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITH 58 (516)
Q Consensus 13 ~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH 58 (516)
+++++|+-|.|... +..|+|+|+++.|..|+......|+.|...=
T Consensus 123 e~i~~~~~VvV~n~-~d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~ 167 (188)
T 1sqw_A 123 ENTSQYQGVVVYSM-ADIPLGFGVAAKSTQDCRKVDPMAIVVFHQA 167 (188)
T ss_dssp TTCCTTCEEEEEET-TCCEEEEEEESSCHHHHHHSCTTSEEEEEEE
T ss_pred CCCCCCCEEEEEeC-CCCEEEEEEeecCHHHHHhcCCCcEEEEEcc
Confidence 57889999999975 5689999999999999987777777665543
No 20
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=78.74 E-value=5.2 Score=34.36 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHhHhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCchhhHHHHHHHH
Q 010169 171 TEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWL 250 (516)
Q Consensus 171 ~e~~D~~l~~all~al~~~~~~~~LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl~~~~~~~~~~~ 250 (516)
.++...-|+..||.-|+.. -..=.+.+..||..||-- + ..+-|--|.|..|+.|.+++.++|+
T Consensus 16 i~~fS~eF~~~Fl~lLr~~--~g~krV~aN~vYnEyI~d-k---~HiHMNaT~W~tLT~Fvk~Lgr~G~----------- 78 (111)
T 2v1n_A 16 MDYFSEEFRNDFLELLRRR--FGTKRVHNNIVYNEYISH-R---EHIHMNATQWETLTDFTKWLGREGL----------- 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TSSCEEEHHHHHHHHTTS-S---CCCCGGGSSCSSHHHHHHHHTTTTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCcEeehhHHHHHHhcc-c---ccccccccccccHHHHHHHhccCCe-----------
Confidence 4556667888999999863 345678999999999922 2 2567778999999999999999999
Q ss_pred HHhhccccceEEeeccCCCeeEEEEecCC
Q 010169 251 LIRRHLKSQISVKEDKYKKESMLFSVNRG 279 (516)
Q Consensus 251 ~~~~~~~~~i~~KE~~~~g~~~I~~vn~~ 279 (516)
.+|.|. .+-..|.=|+++
T Consensus 79 ---------c~V~et--ekG~~I~yId~~ 96 (111)
T 2v1n_A 79 ---------CKVDET--PKGWYIQYIDRD 96 (111)
T ss_dssp ---------EEEEEE--TTEEEEEECCSS
T ss_pred ---------EEEecC--CCceEEEeecCC
Confidence 999874 345678777774
No 21
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=77.75 E-value=0.8 Score=41.01 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=45.5
Q ss_pred CcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010169 424 ALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 494 (516)
Q Consensus 424 ~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~ 494 (516)
+.|++++.+| |+| |++.||... +=+++-+.+.|..-+++++++. +...+|+|.|...-.+
T Consensus 29 ~mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G~~~~~~i~ 92 (138)
T 1nee_A 29 EVPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE------GGRAILQGKFTHFLIN 92 (138)
T ss_dssp CCSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB------TTTEEEESSCSSSHHH
T ss_pred ecCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec------CCEEEEEeeeCHHHHH
Confidence 4566666554 776 999998644 5678899999999999999995 3578999997554433
No 22
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=75.54 E-value=2.7 Score=36.40 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 315 EVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 315 ~v~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
+.+.+-+|...+..++..+|... ..||..|+...|-+||-.+.|-|+.++.+|.= ++.|...+
T Consensus 23 Eqe~~VrPk~~LLkiLq~aGA~~-~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~ 86 (119)
T 1z1m_A 23 EQETLVRPKPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF 86 (119)
T ss_dssp SSCCCCCCSTTSHHHHHHHTCCC-SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHS
T ss_pred hccccccccHHHHHHHHHhcccc-ceeechheeehhhhhhhHhhhcccccCcEEeeCCccccccc
Confidence 34567899999999999999765 88999999999999999999999999988754 45666544
No 23
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.62 E-value=3 Score=38.08 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=55.9
Q ss_pred eEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEc
Q 010169 410 HVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 485 (516)
Q Consensus 410 ~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQ 485 (516)
+-|.+...+...+=+.|++++.+|-+ ||=.=|+|.||... .=+++-+.+.|..-+++++++.+ ++...+|+
T Consensus 10 ~nI~r~~~d~~~RykmP~~~v~~eG~-gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~----~~~rlii~ 84 (157)
T 2e9h_A 10 VNVNRSVSDQFYRYKMPRLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV----KNDRYIVN 84 (157)
T ss_dssp EESSTTCCCSCCCCEEECCCEEECSS-SSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEET----TTTEEEEE
T ss_pred EeccCCCCCcccceecCCCeEEEecc-CCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC----CCCEEEEE
Confidence 34444433333344567777877644 44567899998543 56788999999999999999953 24689999
Q ss_pred CCcHHHHHH
Q 010169 486 GGVIADVAK 494 (516)
Q Consensus 486 Gd~~~~V~~ 494 (516)
|.|.....+
T Consensus 85 G~~~~~~i~ 93 (157)
T 2e9h_A 85 GSHEANKLQ 93 (157)
T ss_dssp BCCCHHHHH
T ss_pred eeeCHHHHH
Confidence 997665444
No 24
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=73.32 E-value=2.5 Score=37.31 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=50.6
Q ss_pred EecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 319 VYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 319 ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
+.+|...+..|+..+|+. ++.||..||...|-+||-.+.|-++.++.+|.= ++.|...+
T Consensus 23 ~VrPk~~LLkiLq~aGA~-~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~ 82 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQ-EEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELL 82 (140)
T ss_dssp CBEECHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH
T ss_pred eecCcHHHHHHHHHhCcc-cceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCccccccc
Confidence 788888899999999975 578999999999999999999999999988854 55677654
No 25
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=67.34 E-value=3.7 Score=34.93 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=50.6
Q ss_pred EEEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 316 VTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 316 v~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
++.+-+|...+..++..+|+.. ..||..|+.-.|-+||-.+.|-|+.++.+|.= ++.|...+
T Consensus 8 ~e~~VrPk~~LLklL~~~GA~~-~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~ 70 (107)
T 1ycq_A 8 QEKLVQPTPLLLSLLKSAGAQK-ETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELF 70 (107)
T ss_dssp -CCCBEECHHHHHHHHHTTCCC-SCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH
T ss_pred cCcccCccHHHHHHHHHhcccc-ceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCccccccc
Confidence 3446678888888999998765 88999999999999999999999999988854 45666654
No 26
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=62.72 E-value=4.6 Score=30.06 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=36.0
Q ss_pred EecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcC
Q 010169 434 RRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 486 (516)
Q Consensus 434 ~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQG 486 (516)
.|-|+| |++.||... .=+|+-+.+.|.+-+++++++. +....|+|
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id------~~rlii~G 51 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE------GGRLILQR 51 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE------TTEEEEEC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec------CCEEEEeC
Confidence 356888 999998644 4578889999999999999995 24677777
No 27
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=62.60 E-value=4.1 Score=35.70 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=49.9
Q ss_pred EEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 317 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 317 ~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
+.+-+|...+..|+..+|.. ++.||.+|+...|.+||-.+.|-++.+..+|.= ++.|...+
T Consensus 22 ~~~Vrpk~~lL~iLq~aGA~-~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~ll 83 (130)
T 3dac_M 22 GTQVHPRAPLLQILKVAGAQ-EEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELL 83 (130)
T ss_dssp -CEEEECHHHHHHHHHTTCC-CSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH
T ss_pred ceecCCcHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceeEeCCccccccc
Confidence 33578888888999999865 578999999999999999999999999888754 45666644
No 28
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=60.17 E-value=3.5 Score=34.71 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=48.9
Q ss_pred EEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 318 EVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 318 ~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
.+-+|...+..++..+|+. ++.||.+|+...|-+||-.+.|-++.+..+|.= ++.|...+
T Consensus 14 ~~Vrpk~~lL~iLq~aGA~-~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~ 74 (100)
T 3fea_A 14 NQVRPKLPLLKILHAAGAQ-GEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELL 74 (100)
T ss_dssp -CBEECHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHH
T ss_pred cccCCcHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceEEeCCCcccccc
Confidence 3577888888999998865 578999999999999999999999988887754 45666644
No 29
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=58.34 E-value=19 Score=36.62 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeec
Q 010169 14 SFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYR 61 (516)
Q Consensus 14 ~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~g 61 (516)
.+..|+.|+|... +..++|||.+.|++.+|. ...+|.+++..+.+.
T Consensus 280 ~i~~gd~V~V~~~-~G~fLAIGe~~~s~~e~~-~~~~G~~vKp~rV~~ 325 (334)
T 2aus_C 280 GIKKGDLVAIMTL-KDELVALGKAMMSTQEMI-ERSKGIAVDVEKVFM 325 (334)
T ss_dssp TCCTTCEEEEEET-TCCEEEEEEESSCHHHHH-HCSSSEEEEEEEECS
T ss_pred ccCCCCEEEEEec-CCeEEEEEEeccCchhcc-ccCCCeEEEEEEEee
Confidence 3567888888754 457999999999999995 478999999999883
No 30
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=52.36 E-value=3.7 Score=35.26 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=50.7
Q ss_pred EEEecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceec-CHHHHHHH
Q 010169 317 TEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL-DPTLSDAL 378 (516)
Q Consensus 317 ~~ly~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~L-D~~L~~~l 378 (516)
+.+-+|...+..|+..+|+.. ..||..|+.-.|-+||-.+.|-|+.++.+|.= ++.|...+
T Consensus 9 e~~VrPk~~LLklLq~~GA~~-~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~ 70 (115)
T 2axi_A 9 ETLVRPKPLLLKLLKSVGAQK-DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF 70 (115)
T ss_dssp CCEEEECHHHHHHHHHTTCCC-SCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHH
T ss_pred ccccCccHHHHHHHHHhcccc-ceeechhheehhhhhhhHhhhcccccCcEEeeCCccccccc
Confidence 446788888889999999765 88999999999999999999999999888754 45666654
No 31
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=51.72 E-value=5.6 Score=36.75 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred cccCCcceEEEEEEEecCCccceEEeccCCC----CCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHH
Q 010169 420 VRKGALKTIQIVTERRQGNKKMTKLSGLETF----LMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAK 494 (516)
Q Consensus 420 ~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f----~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~ 494 (516)
..+=+.|++++.+|-+ ||=.-|+|.||... .=+++-+.+.|..-+++++++.. ++...+|+|.|.....+
T Consensus 13 ~~RykmP~~~v~~EG~-gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~----~~~rliinG~~~~~~i~ 86 (170)
T 2g2k_A 13 FYRYKMPRLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV----KNDRYIVNGSHEANKLQ 86 (170)
T ss_dssp CSSCCCCCCCCEEESC-TTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECT----TTCCEEEEBCCCHHHHH
T ss_pred cccccCCCCeEEEecc-CCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecC----CCCEEEEEeeeCHHHHH
Confidence 3344677888888755 44466888887543 34566788889999999999843 24689999997765554
No 32
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=40.34 E-value=52 Score=33.70 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecc
Q 010169 14 SFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRD 62 (516)
Q Consensus 14 ~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD 62 (516)
.+..|+.|+|... +..++|||.+.|++++|. ...+|.+++....+.+
T Consensus 299 ~i~~gd~V~v~~~-~G~flAIGea~~~~~ei~-~~~kG~vvKp~rVf~~ 345 (357)
T 2apo_A 299 GIGKGETVLVETL-KGEAVAVGKALMNTKEIL-NADKGVAVDVERVYMD 345 (357)
T ss_dssp TCCTTCEEEEECT-TSCEEEEEEESSCHHHHH-HCSSSEEEEEEEECSC
T ss_pred ccCCCCeEEEEcC-CCEEEEEEEecccccccc-ccCCCeEEEEEEEeeC
Confidence 3567888888744 557999999999999995 4778988988888743
No 33
>1wn8_A Kalata B3/B6, oantr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=23.89 E-value=48 Score=20.71 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=16.4
Q ss_pred ccccccHHHHHHHHHHCCc
Q 010169 221 KSSHKKLTKWLQAKSSAGL 239 (516)
Q Consensus 221 KSS~KKlskFLk~~~K~gl 239 (516)
|||---+.-|||.|+=.||
T Consensus 3 ktsett~~~flkemqlkgl 21 (26)
T 1wn8_A 3 KSSETTLTMFLKEMQLKGL 21 (26)
T ss_dssp STTTHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHhcCC
Confidence 6777788999999998887
No 34
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=20.39 E-value=3.1e+02 Score=27.11 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=47.1
Q ss_pred EeccCCCCC-CHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCC-cHHHHHHHHHHhcCCCCccEEEc
Q 010169 444 LSGLETFLM-DPEALASELQKKFACSTTVAELPGKKGQEVLIQGG-VIADVAKHLVEQFGIPKRYIEVL 510 (516)
Q Consensus 444 V~gLe~f~i-d~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd-~~~~V~~~L~~~~gip~k~I~~~ 510 (516)
+.|+...-+ +.......|+=.|=|+|||.++...--.||...+. +...+.++|...||++.+.++..
T Consensus 97 ~~~i~~~i~~~~~~~~A~lRGaFLa~GSv~dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l~ak~~~Rk 165 (295)
T 3hyi_A 97 ESFMVIEPFFDVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDFFNINAGIIELR 165 (295)
T ss_dssp GGGGSCCTTSSHHHHHHHHHHHHHHHEEECCTTTCCCEEEEESCHHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred cccCcHHHhcChHHHHHHHHHHHhcCeecCCCCCceeEEEeeCcHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 344543323 35567789999999999998654322378888876 67777777735699999988653
Done!