RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 010169
         (516 letters)



>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins. 
           eIF2D translation initiation factor (also known as
           ligatin) is involved in the recruitment and delivery of
           aminoacyl-tRNAs to the P-site of the eukaryotic ribosome
           in a GTP-independent manner.
          Length = 85

 Score =  124 bits (314), Expect = 1e-34
 Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG-KKGQEVLIQG 486
           I I TERRQGNKK+T +SGLE+F +DPE  A ELQKK A ST+V+ LPG KKG EV +QG
Sbjct: 2   IDITTERRQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQG 61

Query: 487 GVIADVAKHLVEQFGIPKRYIEVL 510
             +  VAK L E++G+PK+YI+ L
Sbjct: 62  NQVKFVAKLLTEKYGVPKKYIDGL 85


>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1. 
          Length = 74

 Score = 75.2 bits (186), Expect = 4e-17
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)

Query: 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQE 481
           K   + I+I  E+R+G K +T ++GLE F +D + LA EL+KKF C  TV     K G+E
Sbjct: 1   KKEDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTV-----KDGEE 55

Query: 482 VLIQGGVIADVAKHLVEQF 500
           + IQG     V   L ++ 
Sbjct: 56  IEIQGDHRDKVKDLLEKEG 74


>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and
           related proteins [Translation, ribosomal structure and
           biogenesis].
          Length = 104

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 420 VRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKG 479
           V K   + ++I  E R+  K +T + GL+   +D + LA EL+KK AC  TV     K G
Sbjct: 21  VAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDG 75

Query: 480 QEVLIQGGVIADVAKHLVEQFGIPKRYIEV 509
            E+ IQG     V + L+++ G   + I +
Sbjct: 76  -EIEIQGDHRDKVKELLIKK-GFKVKNIGI 103


>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins.
           DENR (density regulated protein), together with MCT-1
           (multiple copies T cell malignancies), has been shown to
           have similar function as eIF2D translation initiation
           factor (also known as ligatin), which is involved in the
           recruitment and delivery of aminoacyl-tRNAs to the
           P-site of the eukaryotic ribosome in a GTP-independent
           manner.
          Length = 86

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 487
           + I    R   K +T ++GLETF +D +  A    KKFAC  +V +    K  E++IQG 
Sbjct: 3   VTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGK-DEIVIQGD 61

Query: 488 VIADVAKHLVEQFG-IPKRYIEVLD 511
           V  D+   ++E++  I +  IE+L 
Sbjct: 62  VTDDIVDLILEKWPEIDEDNIEILG 86


>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related
           proteins.  Members of the eIF1/SUI1 (eukaryotic
           initiation factor 1) family are found in eukaryotes,
           archaea, and some bacteria; eukaryotic members are
           understood to play an important role in accurate
           initiator codon recognition during translation
           initiation. eIF1 interacts with 18S rRNA in the 40S
           ribosomal subunit during eukaryotic translation
           initiation. Point mutations in the yeast eIF1 implicate
           the protein in maintaining accurate start-site selection
           but its mechanism of action is unknown. The function of
           non-eukaryotic family members is also unclear.
          Length = 78

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 487
           I I  E+R G KK+TK+ GL  ++ D   LA EL+KK  C  +V         E+ IQG 
Sbjct: 2   IHIKVEQRSGGKKVTKVEGLPAYI-DLRKLADELKKKLGCGGSVEGEKM----EIEIQGD 56

Query: 488 VIADVAKHLVEQFGIPKRYIEVL 510
               +   L E+ GI K ++E+L
Sbjct: 57  HTDQIIVALEEK-GIDKDWVELL 78


>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1.  This protein
           family shows weak but suggestive similarity to
           translation initiation factor SUI1 and its prokaryotic
           homologs.
          Length = 173

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 414 RGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAE 473
                  +K   + + I  E R   K +T + GLETF +D +  +    +KFA   +V++
Sbjct: 77  AREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSK 136

Query: 474 LPGKKGQEVLIQGGVIADV 492
               K +E++IQG V+ D+
Sbjct: 137 SVTGK-EEIVIQGDVMDDI 154


>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed.
          Length = 99

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 487
           I+I  ++R+  K++T + G++   +D + LA +L+ K AC  TV     K G+ + +QG 
Sbjct: 26  IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGR-IELQGD 79

Query: 488 VIADVAKHLVEQFGIPKRYIE 508
               V + L++  G  +  IE
Sbjct: 80  HRERVKELLIK-MGFSEENIE 99


>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative,
           prokaryotic.  This family of archaeal and bacterial
           proteins is homologous to the eukaryotic translation
           intiation factor SUI1 involved in directing the ribosome
           to the proper start site of translation by functioning
           in concert with eIF-2 and the initiator tRNA-Met
           [Protein synthesis, Translation factors].
          Length = 101

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 400 STFVNR--MQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEAL 457
           ST           V       VVR      IQ  T  R+G K +T + GL+   +D + L
Sbjct: 4   STECGLPKELCEEVAKPKEDQVVR------IQRETRGRKG-KGVTIIEGLDLSDIDLKEL 56

Query: 458 ASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 499
           A EL+ K  C  TV     K G  + IQG     V   L ++
Sbjct: 57  AKELKSKCGCGGTV-----KDGV-IEIQGDHRDRVKDLLEKK 92


>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1,
           eukaryotic.  Alternate name: MOF2. A similar protein
           family (see TIGRFAMs model TIGR01158) is found in
           prokaryotes. The human proteins complements a yeast SUI1
           mutatation [Protein synthesis, Translation factors].
          Length = 110

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 415 GSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAEL 474
           G       G    I I  ++R G K +T + GL     D + +   L+K+FAC+ TV E 
Sbjct: 15  GDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEY-DLKKIVKALKKEFACNGTVIED 73

Query: 475 PGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEV 509
           P + G+ + +QG    +V + L+ Q  + K  I++
Sbjct: 74  P-EMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKI 107


>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia
           coli YciH.  Members of the eIF1/SUI1 (eukaryotic
           initiation factor 1) family are found in eukaryotes,
           archaea, and some bacteria; eukaryotic members are
           understood to play an important role in accurate
           initiator codon recognition during translation
           initiation. The function of non-eukaryotic family
           members is unclear. Escherichia coli YciH is a
           non-essential protein and was reported to be able to
           perform some of the functions of IF3 in prokaryotic
           initiation.
          Length = 76

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 427 TIQIVTERRQ-GNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 485
            +++  E+R  G K +T + GL     D + LA EL+KK  C  TV      K  E+ +Q
Sbjct: 2   KVRVRLEKRGRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTV------KDGEIELQ 55

Query: 486 GGVIADVAKHLVEQ 499
           G     + + L ++
Sbjct: 56  GDHREKIKELLEKK 69


>gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA
           domain) [Translation, ribosomal structure and
           biogenesis].
          Length = 161

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 1   MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
           M PGI + AD       G+   V       P+AVG   MS  E ++   +GKA++  H+ 
Sbjct: 96  MAPGI-VSAD--GEIKEGDIVVVVDEKKGRPLAVGIALMSGKE-MEEKKKGKAVKNIHHV 151

Query: 61  RDLLW 65
            D LW
Sbjct: 152 GDKLW 156


>gnl|CDD|234310 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
           protein.  This universal archaeal protein contains a
           domain possibly associated with RNA binding (pfam01472,
           TIGR00451).
          Length = 150

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 1   MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
           M PGI + AD  PS   G+   V    +  P+AVG   M + E ++   +GKA++  H+ 
Sbjct: 89  MAPGI-VEAD--PSIKEGDIVFVVDETHGKPLAVGIALMDAEEMVEEK-KGKAVKNIHHV 144

Query: 61  RDLLW 65
            D +W
Sbjct: 145 GDKIW 149


>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1.  eIF1/SUI1
           (eukaryotic initiation factor 1) plays an important role
           in accurate initiator codon recognition during
           translation initiation. eIF1 interacts with 18S rRNA in
           the 40S ribosomal subunit during eukaryotic translation
           initiation. Point mutations in the yeast eIF1 implicate
           the protein in maintaining accurate start-site selection
           but its mechanism of action is unknown.
          Length = 84

 Score = 34.0 bits (79), Expect = 0.021
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 428 IQIVTERRQGNKKMTKLSGL-ETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 486
           I I  ++R G K +T + GL E F  D + +    +K+FAC+ TV E P + G+ + +QG
Sbjct: 3   IHIRIQQRNGRKTLTTVQGLPEEF--DLKKILKAFKKEFACNGTVVEDP-EYGEVIQLQG 59

Query: 487 GVIADVAKHLVEQFGIPKRYIEV 509
               ++ + L+E+    K  I+V
Sbjct: 60  DQRKNIKEFLLEEGIAKKDNIKV 82


>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
          Length = 160

 Score = 32.1 bits (74), Expect = 0.34
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 31  PIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLW 65
           P+AVG   M   E      +GKA++  H+  D +W
Sbjct: 123 PLAVGRALMDGDEM-VEEKKGKAVKNIHHVGDEIW 156


>gnl|CDD|203573 pfam07071, DUF1341, Protein of unknown function (DUF1341).  This
           family consists of several hypothetical bacterial
           proteins of around 220 residues in length. The function
           of this family is unknown.
          Length = 218

 Score = 32.8 bits (75), Expect = 0.34
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 304 ASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPT 363
           A D  Q A + +++   +P  H+N +F  VG     L       D V N      LV PT
Sbjct: 64  AGDPNQSAMVADISRHVQPQ-HINQVFTGVGTSRALL----GQNDTVVN-----GLVSPT 113

Query: 364 AK 365
            K
Sbjct: 114 GK 115


>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           alpha chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 531

 Score = 31.6 bits (72), Expect = 1.2
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 447 LETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 502
           L  +    E     + K  A            G  V++ GG + D+A H + ++GI
Sbjct: 257 LLNYSKGEENQIEAMIKAIA----------DSGVNVIVTGGSVGDMALHYLNRYGI 302


>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain.  This family includes the SWIB
           domain and the MDM2 domain. The p53-associated protein
           (MDM2) is an inhibitor of the p53 tumour suppressor gene
           binding the transactivation domain and down regulating
           the ability of p53 to activate transcription. This
           family contains the p53 binding domain of MDM2.
          Length = 76

 Score = 28.0 bits (63), Expect = 2.9
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 331 ASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIK 384
             +GA      + +E    ++ YI++ NL  P  K I++ D  L        + 
Sbjct: 13  KFLGAGE---LSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIFGGDRVG 63


>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
           This family includes O-antigen polysaccharide
           polymerases. These enzymes link O-units via a glycosidic
           linkage to form a long O-antigen. These enzymes vary in
           specificity and sequence.
          Length = 440

 Score = 30.0 bits (68), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 240 FVLQLMLVFWLLIRRHLKSQISVKE 264
           FVL ++ + W  I R+  S I  KE
Sbjct: 218 FVLNILFILWYYILRNYISWIGKKE 242


>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine
          synthase and Archaeosine transglycosylase. 
          Length = 76

 Score = 27.2 bits (61), Expect = 4.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 31 PIAVGSTTMSSTEALKAGLRGKALRITHYY 60
          P+ +G   MSS E  +   +G A+++    
Sbjct: 46 PLGIGLANMSSEEIARIKGKGLAVKVRRAV 75


>gnl|CDD|129543 TIGR00451, unchar_dom_2, uncharacterized domain 2.  This
           uncharacterized domain is found a number of enzymes and
           uncharacterized proteins, often at the C-terminus. It is
           found in some but not all members of a family of related
           tRNA-guanine transglycosylases (tgt), which exchange a
           guanine base for some modified base without breaking the
           phosphodiester backbone of the tRNA. It is also found in
           rRNA pseudouridine synthase, another enzyme of RNA base
           modification not otherwise homologous to tgt. It is
           found, again at the C-terminus, in two putative
           glutamate 5-kinases. It is also found in a family of
           small, uncharacterized archaeal proteins consisting
           mostly of this domain.
          Length = 107

 Score = 27.8 bits (62), Expect = 4.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1   MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
           M PGI    + +     G+   V       P+AVG   MS  E  +   +GKA++  H+ 
Sbjct: 50  MRPGIVDADEDIKE---GDDVVVVDENKDRPLAVGIALMSGEEMKEMD-KGKAVKNIHHI 105

Query: 61  RD 62
            D
Sbjct: 106 GD 107


>gnl|CDD|201816 pfam01472, PUA, PUA domain.  The PUA domain named after
          Pseudouridine synthase and Archaeosine
          transglycosylase, was detected in archaeal and
          eukaryotic pseudouridine synthases, archaeal
          archaeosine synthases, a family of predicted ATPases
          that may be involved in RNA modification, a family of
          predicted archaeal and bacterial rRNA methylases.
          Additionally, the PUA domain was detected in a family
          of eukaryotic proteins that also contain a domain
          homologous to the translation initiation factor
          eIF1/SUI1; these proteins may comprise a novel type of
          translation factors. Unexpectedly, the PUA domain was
          detected also in bacterial and yeast glutamate kinases;
          this is compatible with the demonstrated role of these
          enzymes in the regulation of the expression of other
          genes. It is predicted that the PUA domain is an RNA
          binding domain.
          Length = 74

 Score = 27.1 bits (61), Expect = 5.1
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 1  MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
          + PG+ +  DG   F  G+   V        +AVG    SS E  K    GKA+++    
Sbjct: 20 LAPGV-VEVDG--DFRRGDEVVVVTEKG-ELVAVGLANYSSEEMAKI-KGGKAVKVRRVL 74


>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
          Length = 426

 Score = 29.2 bits (66), Expect = 5.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 472 AELP-GKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 515
           A LP G+ G ++ I GG IA V   L  +        E +D   R
Sbjct: 9   ANLPDGRTGIDIGIAGGRIAAVEPGLQAEAA------EEIDAAGR 47


>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
          Length = 341

 Score = 29.0 bits (65), Expect = 6.4
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 6   SIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLR 50
            IP  G P FLS  PW +     P  +      +   EAL   LR
Sbjct: 58  FIPFGG-PLFLSSPPWKLLQSATPLTLRGNGVVLKKVEALNLRLR 101


>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase.  Allophanate
           hydrolase catalyzes the second reaction in an
           ATP-dependent two-step degradation of urea to ammonia
           and C02, following the action of the biotin-containing
           urea carboxylase. The yeast enzyme, a fusion of
           allophanate hydrolase to urea carboxylase, is designated
           urea amidolyase [Central intermediary metabolism,
           Nitrogen metabolism].
          Length = 561

 Score = 28.8 bits (65), Expect = 7.1
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 16/60 (26%)

Query: 6   SIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALK------AGLRGKALRITHY 59
            +PA+    F++  P         AP+ +G+ T++    +K      A L G A  IT +
Sbjct: 504 ELPAEAFGRFVAAIP---------APLGIGTVTLADGSWVKGFICEPAALEG-ARDITAF 553


>gnl|CDD|211966 TIGR04243, nodulat_NodB, chitooligosaccharide deacetylase NodB.
           Nodulation factors are lipooligosaccharide signalling
           molecules produced by rhizobia, the symbiotic
           nitrogen-fixing bacteria that form nodules in plants.
           These Nod factor sustems have the NodABC genes in common
           but differ subtly in what they produce, which affects
           host range. NodB is a chitooligosaccharide deacetylase.
          Length = 197

 Score = 28.1 bits (63), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 171 TEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPC-RPSGITL 217
           T++V     K  L  LH +V  +D   PG     + +L   RP  I L
Sbjct: 106 TDEVLRVAAKAGLTPLHWSVDPRDWSRPGVDAIVDAVLANARPGSIVL 153


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,709,168
Number of extensions: 2471131
Number of successful extensions: 1619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 31
Length of query: 516
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 415
Effective length of database: 6,457,848
Effective search space: 2680006920
Effective search space used: 2680006920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.2 bits)