RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010169
(516 letters)
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein;
NMR {Saccharomyces cerevisiae}
Length = 108
Score = 76.4 bits (188), Expect = 3e-17
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQE 481
I I ++R G K +T + G+ D + + L+K FAC+ + + P + G+
Sbjct: 20 TATSNYIHIRIQQRNGRKTLTTVQGVPEEY-DLKRILKVLKKDFACNGNIVKDP-EMGEI 77
Query: 482 VLIQGGVIADVAKHLVEQFGIPKRYIEV 509
+ +QG A V + ++ Q G+ K+ I++
Sbjct: 78 IQLQGDQRAKVCEFMISQLGLQKKNIKI 105
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 68.1 bits (166), Expect = 2e-13
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PG++ P L A+ G + VG MS+ + ++ +G + HY
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAED-IEKVNKGIGIENIHYL 170
Query: 61 RDLLW 65
D LW
Sbjct: 171 NDGLW 175
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
d.64.1.1
Length = 126
Score = 65.7 bits (160), Expect = 3e-13
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 417 QSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG 476
++ G I I ++R G K +T + G+ D + L +KKFAC+ TV E P
Sbjct: 33 DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY-DKKKLVKAFKKKFACNGTVIEHP- 90
Query: 477 KKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEV 509
+ G+ + +QG ++ + LVE ++V
Sbjct: 91 EYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKV 123
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 63.7 bits (155), Expect = 4e-12
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALK---AGLRGKALRIT 57
M PG+ + +G SF G+ A P+ VG + S+ K RG+A+R
Sbjct: 112 MIPGV-VGVEG--SFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRV 168
Query: 58 HYYRDLLW 65
H D LW
Sbjct: 169 HRLGDALW 176
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown
function; 1.73A {Pyrococcus horikoshii}
Length = 179
Score = 63.3 bits (154), Expect = 7e-12
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PGI + AD G+ V P+A+G MS +K RGKA+++ H+
Sbjct: 114 MAPGI-VDAD--EGIKEGDFVFVVEEKYGRPLAIGIALMSGKV-MKEKNRGKAVKVIHHA 169
Query: 61 RDLLW 65
RD +W
Sbjct: 170 RDKIW 174
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_F
Length = 101
Score = 61.1 bits (148), Expect = 7e-12
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 487
I I E+R+G K T + G+ D E + +K +C+ T+ E + + + + G
Sbjct: 19 IHIRVEQRRGRKCFTTVEGIPP-EFDYEKIMKYWKKWLSCNATIVEED-EGKKVIKLNGD 76
Query: 488 VIADVAKHLVEQFGIPKRYIEV 509
+ + L E+ I +
Sbjct: 77 HRNQIQQFLSEEGIAAVDNITI 98
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR
structure initiative; 2.10A {Thermoplasma acidophilum
dsm 1728} SCOP: b.122.1.1 d.17.6.2
Length = 153
Score = 54.0 bits (130), Expect = 7e-09
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
PGI + D S G+ V IAVG M + E + RGKA RI H+
Sbjct: 90 FAPGI-VSMD--DSIRKGDMIFV-KSSKGYFIAVGMAEMDAGEVMATK-RGKAARIIHFP 144
Query: 61 RDLLW 65
D L
Sbjct: 145 GDELI 149
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 50.2 bits (120), Expect = 5e-08
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 17/103 (16%)
Query: 400 STFVNRM---QAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEA 456
ST R+ +A V +G V IQ T R K + ++G++ +
Sbjct: 11 STETGRIDEPKAAPVRPKGDGVVR-------IQRQTSGR-KGKGVCLITGVDLDDAELTK 62
Query: 457 LASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 499
LA+EL+KK C V K + IQG + L +
Sbjct: 63 LAAELKKKCGCGGAV------KDGVIEIQGDKRDLLKSLLEAK 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 8e-07
Identities = 69/564 (12%), Positives = 144/564 (25%), Gaps = 231/564 (40%)
Query: 56 ITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEG 115
+ Y+D+L F+++ +D V D +
Sbjct: 14 HQYQYKDIL-----SVFEDA--FVDNFDCKD--------VQDM--------------PKS 44
Query: 116 IIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENV-DAGETNEEHHVLTTEDV 174
I+ ++++ D +I+ A G L+L + E + V +
Sbjct: 45 IL--------------SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 175 DAYLDKCLLQALHTTVKDKDLPMPG-----STLW-SNHILP----CRPSGITLDIKKSSH 224
+ Y K L+ + T + + L+ N + R +
Sbjct: 90 N-Y--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---------PY 137
Query: 225 KKLTKWLQAKSSAGLFVLQLML------------------------VFWLLIRRHLKSQI 260
KL + L A ++ +L +FWL +LK+
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCN 193
Query: 261 SVKEDKYKKESMLFSVNRGHPDYLS----FKPEKRPAEKASQAV-------DHAAS---- 305
S + + +L+ ++ P++ S K + +
Sbjct: 194 SPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 306 DNIQPAKILE---------VT--------------EVYKPSVHVNP---------IFAS- 332
N+Q AK +T + H + +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 333 VGADTGRLYTFSEACDVV--------------------FNYIEKENLVKPTAKSIVVLDP 372
+ L E + ++ + L S+ VL+P
Sbjct: 311 LDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 373 TLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVT 432
+F L SV A +
Sbjct: 369 AEYRKMF----------------DRL-------------------SVFPPSAHIPTIL-- 391
Query: 433 ERRQGNKKMTKLSGL--ETFLMDPEALASELQKKFACSTTVAELPGKKGQEVL------I 484
LS + + D + ++L K ++ E K+ + +
Sbjct: 392 -----------LSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYLEL 435
Query: 485 QGGVIADVAKH--LVEQFGIPKRY 506
+ + + A H +V+ + IPK +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTF 459
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 7e-06
Identities = 39/268 (14%), Positives = 85/268 (31%), Gaps = 85/268 (31%)
Query: 249 WLLIRRHLKSQ--ISVKE---DKYKKESMLFSVNRGHP---DYLSFKPE-----KRPAEK 295
W H K S+ + + ++ F +G +Y + E K EK
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 296 ASQAVDHAASDNI--------------QPAKILEVTEV----------YKPSVHVNPIFA 331
+ ++ ++ QPA + + E P+ + FA
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPA-LT-LMEKAAFEDLKSKGLIPA---DATFA 1760
Query: 332 --SVG------ADTGRLYTFSEACDVVF---NYIEKENLVKPTAKS---IVVLDP----- 372
S+G + + + +VVF ++ +S ++ ++P
Sbjct: 1761 GHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 373 TLSDALFKGAIK---KGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVV--RKGALKT 427
+ S + ++ K T + EI VN ++V Q V AL T
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEI---------VN----YNV--ENQQYVAAGDLRALDT 1864
Query: 428 I-QIVTERRQGNKKMTKLSGLETFLMDP 454
+ ++ + + +L ++ ++
Sbjct: 1865 VTNVLNFIKLQKIDIIELQ--KSLSLEE 1890
Score = 39.6 bits (92), Expect = 0.003
Identities = 80/503 (15%), Positives = 151/503 (30%), Gaps = 151/503 (30%)
Query: 38 TMSSTEALKAGLRGKALR--ITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQV 95
S E K G + L +T + L G+ + H++ A L++ D + T ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALA-AKLLQE---NDTTLVKTKEL 122
Query: 96 SDSCEGAADSSN--DQKNGEEGIIDADNANSEPNSTSAT---QDDFDGNIVEQV------ 144
+ A + K + A A Q GN +
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQLVAIFGGQ----GNTDDYFEELRDL 176
Query: 145 ----AADVGDL------KLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVK--D 192
VGDL L+E + E+ T+ ++ +L+ L D
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLN------ILEWLENPSNTPD 227
Query: 193 KD--------LPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKS--SAGL--- 239
KD P+ G +++++ + G T +L +L+ + S GL
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-------PGELRSYLKGATGHSQGLVTA 280
Query: 240 -----------FVLQ----LMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDY- 283
F + + ++F++ +R + + ++S+ N G P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGVPSPM 338
Query: 284 LSFKPEKRPAEKASQAVDHAASDN--IQPAKILEVTEVYKPSVHV---NP---------- 328
LS + Q D+ N + K +E++ V V P
Sbjct: 339 LSISNLTQ-----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 329 --IFASVGADTGRLYTFSE---ACDVVF---------NYIEKENLVKPTAKSIVVLDPTL 374
A G D R+ FSE F + + A ++ D
Sbjct: 394 RKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLVP-------ASDLINKDLVK 445
Query: 375 SDALFKGAIKKGTTYPTE------IHKKDLGSTFV-------------NRMQAHHVVSRG 415
++ F + Y T + + V + +A H++ G
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 416 SQSVVRKGALKTIQIVTER-RQG 437
G + ++T R + G
Sbjct: 506 P------GGASGLGVLTHRNKDG 522
Score = 38.1 bits (88), Expect = 0.009
Identities = 30/162 (18%), Positives = 45/162 (27%), Gaps = 59/162 (36%)
Query: 53 ALRITHY--YRDLL-WGSVE------GHS-------VPNAGFL--EDVV--VEDPAFLST 92
AL + + DL G + GHS A + E +V V
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 93 SQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSAT--QDDFDGNIVEQVAADVGD 150
V E G + P +A+ Q+ +VE+V G
Sbjct: 1795 VAV--------------PRDELGRSNYGMIAINPGRVAASFSQEALQ-YVVERVGKRTG- 1838
Query: 151 LKLTE----NVD------AGETNEEHHVLTTEDVDAYLDKCL 182
L E NV+ AG+ +D + L
Sbjct: 1839 -WLVEIVNYNVENQQYVAAGD---------LRALDT-VTNVL 1869
Score = 37.3 bits (86), Expect = 0.014
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 28/117 (23%)
Query: 51 GKALRITHYY-RDLLWGSVEGHSVPNAGF-LEDVVVEDP---AFLSTSQVSDSCEGAADS 105
G L T +D+ W + H GF + D+V+ +P + +G
Sbjct: 1632 GMDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-----KGKRIR 1685
Query: 106 SNDQKNGEEGIIDADNANSE------PNSTSATQDDFDGNIVEQVAADVGDLKLTEN 156
N E I+D + +STS T F + G L T+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRS--------EKGLLSATQF 1731
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 28.8 bits (65), Expect = 4.7
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 455 EALASELQKKFA-CSTTVAELPGKKGQEV---LIQGGVIADVAKHLVEQFGIPKRYIEVL 510
LA F T G G+EV + A A VEQ GI +I+ +
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIV--FIDEI 125
Query: 511 DKTARK 516
DK +K
Sbjct: 126 DKICKK 131
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction,
receptor, UBL conjugation, UBL conjugation pathway,
acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Length = 382
Score = 28.2 bits (62), Expect = 6.7
Identities = 18/87 (20%), Positives = 30/87 (34%)
Query: 223 SHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPD 282
S + L + + L ++ F L R+ L + V K E LFSVN+
Sbjct: 217 SFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSL 276
Query: 283 YLSFKPEKRPAEKASQAVDHAASDNIQ 309
+ K +KR + +
Sbjct: 277 IKNAKVQKRGKINLIGRLQLTTERMRE 303
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein
transport; 2.00A {Xanthomonas campestris} SCOP:
d.52.10.1 PDB: 2d27_A
Length = 149
Score = 27.4 bits (61), Expect = 6.7
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 451 LMDPEAL--ASELQKKFACSTTVAELPGKKGQEVLIQGGVI--ADVAKHLVEQFGIP 503
+ L A +LQ + G +L + G++ D A+ E G+P
Sbjct: 19 RLKDTDLVRARQLQAE----------SGMGLLALLGRLGLVSERDHAETCAEVLGLP 65
>3nts_A VSDC; mono-ADP ribosyltransferase toxin, transferase; 3.40A
{Aeromonas hydrophila}
Length = 241
Score = 27.9 bits (61), Expect = 7.6
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 56 ITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTS 93
++ YR L E ++ +V +P F+STS
Sbjct: 118 LSFVYRGLALDKPELAALKEQFTGVGNIVVEPGFMSTS 155
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 27.2 bits (61), Expect = 7.7
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 382 AIKKGTTYPTEI--HKKDLGSTFVNRMQAHHVVSRGSQSVVRK--GALKTIQI-VTERRQ 436
AI T ++ + K G F N + R + V+ G +Q+ TE +
Sbjct: 69 AIDNQTEVTVQLINYTKS-GKKFWNLFHLQPM--RDQKGDVQYFIG----VQLDGTEHVR 121
Query: 437 GNKKMTKLSGLETFLMDPEALASEL 461
+ + ++ + + A EL
Sbjct: 122 DAAEREGVMLIKKTAENIDEAAKEL 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.375
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,720,562
Number of extensions: 466697
Number of successful extensions: 714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 21
Length of query: 516
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 418
Effective length of database: 3,965,535
Effective search space: 1657593630
Effective search space used: 1657593630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.9 bits)