Query 010171
Match_columns 516
No_of_seqs 323 out of 1516
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 21:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010171.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010171hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa2 d.219.1.1 (A:2-296) Pr 100.0 1.6E-48 1.2E-52 392.5 27.3 259 153-506 31-293 (295)
2 d1txoa_ d.219.1.1 (A:) putativ 100.0 1.4E-37 1E-41 301.5 18.9 221 154-505 15-235 (235)
3 d1nbua_ d.96.1.3 (A:) 7,8-dihy 20.6 94 0.0069 23.6 6.2 46 429-475 43-88 (118)
4 d1hq0a_ d.194.1.1 (A:) Type 1 16.3 48 0.0035 30.1 3.7 23 289-312 142-164 (295)
5 d1qk7a_ g.3.6.2 (A:) Lectin SH 12.8 22 0.0016 20.7 0.2 10 17-26 3-12 (32)
6 d1sqla_ d.96.1.3 (A:) 7,8-dihy 12.1 2.8E+02 0.02 20.7 7.3 45 429-474 43-87 (120)
7 d1prtc2 d.169.1.2 (C:4-89) Per 11.1 26 0.0019 24.8 0.1 13 168-180 46-58 (86)
8 d1prtb2 d.169.1.2 (B:4-89) Per 10.0 26 0.0019 24.8 -0.2 13 168-180 46-58 (86)
9 d1b9la_ d.96.1.3 (A:) 7,8-dihy 9.9 2E+02 0.014 21.6 5.3 44 429-473 46-89 (119)
10 d1otfa_ d.80.1.1 (A:) 4-oxaloc 9.8 1.3E+02 0.0098 19.6 3.7 35 460-509 17-51 (59)
No 1
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.6e-48 Score=392.47 Aligned_cols=259 Identities=24% Similarity=0.322 Sum_probs=214.3
Q ss_pred CCCCCCceEEeeecCC---CCeEEEEEEcCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCccCCccchhh
Q 010171 153 GGAAGEDRVQAVCSEE---HGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIF 229 (516)
Q Consensus 153 ~~~~nEDr~~~~~~~~---~g~~ffgVfDGHGG~~aa~~as~~L~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (516)
.+..|||++.+..... ..+.||||||||||+.+|+|++++|++.|.+.+... ..
T Consensus 31 ~R~~~ED~~~~~~~~~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~---~~-------------------- 87 (295)
T d1a6qa2 31 WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFK---GS-------------------- 87 (295)
T ss_dssp TSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHH---CS--------------------
T ss_pred CCCcccCeeEEEcccCCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhc---cc--------------------
Confidence 3567899998776533 357889999999999999999999999998764310 00
Q ss_pred hhhhhhhhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEeCCeEEEE
Q 010171 230 EDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTL 309 (516)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~af~~~d~~~~~~~~~~~~~~~~~~~~GSTa~v~li~~~~L~vA 309 (516)
.......++.++|+++|.++++.+....+. ......+|||++++++.+++||||
T Consensus 88 ----------------------~~~~~~~~~~~al~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~va 141 (295)
T d1a6qa2 88 ----------------------AGAPSVENVKNGIRTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFI 141 (295)
T ss_dssp ----------------------SSSCCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEE
T ss_pred ----------------------cccchHHHHHHHHHHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEE
Confidence 111234578889999999999887644332 334556899999999999999999
Q ss_pred EecCcceEEEEeCCcccccCCCceEEEEcCCCCCCCCHHHHhhHhhcCCCCCCceecCcccCccccccccCChhhhhccc
Q 010171 310 NLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNL 389 (516)
Q Consensus 310 NvGDSRAvL~r~~~~~~~~~~~~~~~~~LT~dH~~~~~~E~~RI~~~hp~~~~vi~~~Rv~G~L~vTRa~GD~~lK~~~~ 389 (516)
||||||||+++.+ .+++||.||++.++.|++||.+.| ..+..+|+.|.|++||||||..+|....
T Consensus 142 nvGDSR~~l~~~~-----------~~~~lT~dH~~~~~~E~~Ri~~~g----g~v~~~r~~g~l~~tRa~Gd~~~k~~~~ 206 (295)
T d1a6qa2 142 NCGDSRGLLCRNR-----------KVHFFTQDHKPSNPLEKERIQNAG----GSVMIQRVNGSLAVSRALGDFDYKCVHG 206 (295)
T ss_dssp EESSCEEEEEETT-----------EEEEECCCCCTTSHHHHHHHHHTT----CCEETTEETTTBSCSBCEECGGGSCCTT
T ss_pred ecCCCeEEEeecc-----------cceeeccccCcccHHHHhhHhhcC----CcccccccCCceeeeeccCcHHhhhccc
Confidence 9999999999998 999999999999999999999984 5677889999999999999999985311
Q ss_pred hhhhhhhhhcccCCCCCceeeeeeEEEEEcc-CCCeEEEEEcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 010171 390 NDALMGILRVRNLISPPYVSTRPSLNVHRIT-KSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVE 468 (516)
Q Consensus 390 ~~~~~~~~~~~~~~tpP~Vs~~Pdv~~~~L~-~~D~FLVLaSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~ 468 (516)
...++|+|+++|+|..+++. ++|.|||||||||||+|+++||+++|++.+.. ...++.+|++|++
T Consensus 207 -----------~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~---~~~~~~~a~~Lv~ 272 (295)
T d1a6qa2 207 -----------KGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV---TDDLEKVCNEVVD 272 (295)
T ss_dssp -----------CCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT---CCCHHHHHHHHHH
T ss_pred -----------cCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhc---CCCHHHHHHHHHH
Confidence 11234789999999999986 56789999999999999999999999987654 3568889999999
Q ss_pred HHHHHcCCchhhhcccccCCCCCCCCceEEEEEEeCCC
Q 010171 469 RAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTN 506 (516)
Q Consensus 469 ~A~~~~g~~~~~l~~~~~~~~R~~~DNITVIVI~l~~~ 506 (516)
.|..+++ .||||||||+|...
T Consensus 273 ~A~~~gs-----------------~DNiTvivv~~~~~ 293 (295)
T d1a6qa2 273 TCLYKGS-----------------RDNMSVILICFPNA 293 (295)
T ss_dssp HHHHTTC-----------------CSCEEEEEEECTTS
T ss_pred HHHhcCC-----------------CCCeEEEEEeccCC
Confidence 9987665 99999999999865
No 2
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=1.4e-37 Score=301.46 Aligned_cols=221 Identities=24% Similarity=0.305 Sum_probs=171.9
Q ss_pred CCCCCceEEeeecCCCCeEEEEEEcCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCccCCccchhhhhhh
Q 010171 154 GAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDER 233 (516)
Q Consensus 154 ~~~nEDr~~~~~~~~~g~~ffgVfDGHGG~~aa~~as~~L~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (516)
++.|||++.+- .. +|||||||||+.+|+++++.+...+.+.+. .
T Consensus 15 R~~nEDa~~~~----~~--l~~V~DG~GG~~~g~~as~~~~~~l~~~~~-------~----------------------- 58 (235)
T d1txoa_ 15 RANNEDSVYAG----AR--LLALADGMGGHAAGEVASQLVIAALAHLDD-------D----------------------- 58 (235)
T ss_dssp CSSCCEEEEEC----SS--EEEEEEEECTTTHHHHHHHHHHHHHGGGGS-------S-----------------------
T ss_pred CCCCCCccccC----CC--EEEEEeCCCCcHHHHHHHHHHHHHHHHHhh-------c-----------------------
Confidence 35799998662 22 569999999999999999999888876432 0
Q ss_pred hhhhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEEeCCeEEEEEecC
Q 010171 234 KDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGD 313 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~af~~~d~~~~~~~~~~~~~~~~~~~~GSTa~v~li~~~~L~vANvGD 313 (516)
.....+.+.|+++|++++..+.+.... .++...+|||++++++.++++|++||||
T Consensus 59 ---------------------~~~~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~gtt~~~~~~~~~~l~~anvGD 113 (235)
T d1txoa_ 59 ---------------------EPGGDLLAKLDAAVRAGNSAIAAQVEM----EPDLEGMGTTLTAILFAGNRLGLVHIGD 113 (235)
T ss_dssp ---------------------CCCSCHHHHHHHHHHHHHHHHHHHHHH----CGGGTTCEECEEEEEEETTEEEEEEESS
T ss_pred ---------------------cCcccHHHHHHHHHHHHHHHHHHHhhc----ccccccceeeeeeeeeccceeEEEecCC
Confidence 011245567888898888887654333 2334558999999999999999999999
Q ss_pred cceEEEEeCCcccccCCCceEEEEcCCCCCCCCHHHHhhHhhcCCCCCCceecCcccCccccccccCChhhhhccchhhh
Q 010171 314 SRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKKNLNDAL 393 (516)
Q Consensus 314 SRAvL~r~~~~~~~~~~~~~~~~~LT~dH~~~~~~E~~RI~~~hp~~~~vi~~~Rv~G~L~vTRa~GD~~lK~~~~~~~~ 393 (516)
||+|+++.+ ++++||+||++.++.++.+.... ...........+||++|+.
T Consensus 114 Sr~~l~r~g-----------~~~~lt~dH~~~~~~~~~g~~~~-------~~~~~~~~~~~lt~~~g~~----------- 164 (235)
T d1txoa_ 114 SRGYLLRDG-----------ELTQITKDDTFVQTLVDEGRITP-------EEAHSHPQRSLIMRALTGH----------- 164 (235)
T ss_dssp CEEEEEETT-----------EEEECSCCCBHHHHHHHTTSSCT-------TGGGGCTTTTCBCCCBSSS-----------
T ss_pred ccEEEecCC-----------EEEEecCCCcHHHHhhhhcccch-------hhhhhccccchhhcccccc-----------
Confidence 999999999 99999999998665555432221 1112234556799999975
Q ss_pred hhhhhcccCCCCCceeeeeeEEEEEccCCCeEEEEEcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH
Q 010171 394 MGILRVRNLISPPYVSTRPSLNVHRITKSDHFVIVASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAEC 473 (516)
Q Consensus 394 ~~~~~~~~~~tpP~Vs~~Pdv~~~~L~~~D~FLVLaSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~~A~~~ 473 (516)
..+|++..+++.++|.| |||||||||+|+++|+.+++.. ..++.+|+.|++.|.++
T Consensus 165 ---------------~~~pdi~~~~l~~~D~l-lL~SDGl~d~l~~~ei~~i~~~--------~~~~~~a~~Lv~~A~~~ 220 (235)
T d1txoa_ 165 ---------------EVEPTLTMREARAGDRY-LLCSDGLSDPVSDETILEALQI--------PEVAESAHRLIELALRG 220 (235)
T ss_dssp ---------------CCCCEEEEEECCTTCEE-EEECHHHHTTSCHHHHHHHHTS--------SSHHHHHHHHHHHHHHT
T ss_pred ---------------cccceEEEEecCCCCEE-EEcCcchhcCCCHHHHHHHHhC--------CCHHHHHHHHHHHHHhc
Confidence 34799999999999965 5999999999999999999963 35678899999999876
Q ss_pred cCCchhhhcccccCCCCCCCCceEEEEEEeCC
Q 010171 474 AGFSLEELMNVPAGRRRKYHDDVTVIVIILGT 505 (516)
Q Consensus 474 ~g~~~~~l~~~~~~~~R~~~DNITVIVI~l~~ 505 (516)
++ .||||||||+|++
T Consensus 221 gs-----------------~DNiTvivv~l~~ 235 (235)
T d1txoa_ 221 GG-----------------PDNVTVVVADLEH 235 (235)
T ss_dssp TC-----------------CSCEEEEEEEEEC
T ss_pred CC-----------------CCCEEEEEEEEeC
Confidence 65 8999999999864
No 3
>d1nbua_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Bacteria (Mycobacterium tuberculosis) [TaxId: 1773]}
Probab=20.61 E-value=94 Score=23.60 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=35.9
Q ss_pred EcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHcC
Q 010171 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECAG 475 (516)
Q Consensus 429 aSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~~A~~~~g 475 (516)
.+|-|-+.++..++.+.|.+.+.+... .-.+.+|+.+.+.......
T Consensus 43 ~~D~l~~tvdY~~l~~~i~~~~~~~~~-~LlE~la~~I~~~i~~~~~ 88 (118)
T d1nbua_ 43 NSDDLADTYDYVRLASRAAEIVAGPPR-KLIETVGAEIADHVMDDQR 88 (118)
T ss_dssp HHCCGGGSCCHHHHHHHHHHHHHSSCC-SCHHHHHHHHHHHHHTSTT
T ss_pred cccccccCccHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccCC
Confidence 578899999999999999998876543 4577888888887765433
No 4
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=48 Score=30.05 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCCCCceEEEEEEeCCeEEEEEec
Q 010171 289 LVSVGSCVLLVLLHGNDLYTLNLG 312 (516)
Q Consensus 289 ~~~~GSTa~v~li~~~~L~vANvG 312 (516)
..++|||.+++ ++++.+|.-|+|
T Consensus 142 G~LSGCT~v~A-~K~~~ly~~HtG 164 (295)
T d1hq0a_ 142 GNLSGCTTIVA-RKEGYIYKVHTG 164 (295)
T ss_dssp CCBSSCEEEEE-EETTEEEEEEEE
T ss_pred CcccCcEEEEE-EcCCeEEEEEcc
Confidence 45689998777 688999999999
No 5
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=12.83 E-value=22 Score=20.71 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=7.6
Q ss_pred eeeeecCCCC
Q 010171 17 FGYQCNGHRD 26 (516)
Q Consensus 17 ~~~~~~~~~~ 26 (516)
|||+|+-+.|
T Consensus 3 ~g~kcdy~~g 12 (32)
T d1qk7a_ 3 LGDKCDYNNG 12 (32)
T ss_dssp TTCBCSSSCC
T ss_pred ccccccccCC
Confidence 7888887665
No 6
>d1sqla_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.06 E-value=2.8e+02 Score=20.68 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=36.2
Q ss_pred EcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHc
Q 010171 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAECA 474 (516)
Q Consensus 429 aSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~~A~~~~ 474 (516)
.+|-|-+.++..++.+.|.+.+.+.+. .-.+.+|+++.+......
T Consensus 43 ~~D~l~~tidY~~l~~~i~~~~~~~~~-~LiE~la~~i~~~il~~~ 87 (120)
T d1sqla_ 43 ESDNLEDTISYVDIFSLAKEIVEGSPR-NLLETVAELIASKTLEKF 87 (120)
T ss_dssp HHCCGGGSCCHHHHHHHHHHHHTSSCC-SCHHHHHHHHHHHHHHHC
T ss_pred cccccccccCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHhC
Confidence 468889999999999999998876544 567888888888776653
No 7
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=11.07 E-value=26 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=11.2
Q ss_pred CCCeEEEEEEcCC
Q 010171 168 EHGLLFCAIYDGF 180 (516)
Q Consensus 168 ~~g~~ffgVfDGH 180 (516)
..||.+||+|||-
T Consensus 46 t~gwsi~~lydgt 58 (86)
T d1prtc2 46 TPGWSIYGLYDGT 58 (86)
T ss_dssp CCTTCEEECSSSE
T ss_pred CCCceEEEEeccc
Confidence 4589999999994
No 8
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=10.02 E-value=26 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.3
Q ss_pred CCCeEEEEEEcCC
Q 010171 168 EHGLLFCAIYDGF 180 (516)
Q Consensus 168 ~~g~~ffgVfDGH 180 (516)
..||.+||+|||-
T Consensus 46 t~gwsi~~lydgt 58 (86)
T d1prtb2 46 TRGWSIFALYDGT 58 (86)
T ss_dssp CCSSCEEECSSEE
T ss_pred CCCceEEEEeccc
Confidence 4699999999994
No 9
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase {Escherichia coli [TaxId: 562]}
Probab=9.87 E-value=2e+02 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=33.6
Q ss_pred EcCCCCCCCCHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH
Q 010171 429 ASDGLFDFFTNEETVDLVGCYIVSNPSGDPAKFLLEHLVERAAEC 473 (516)
Q Consensus 429 aSDGLwD~ls~eEvv~iV~~~~~~~~~~~~a~~la~~Ll~~A~~~ 473 (516)
.+|-|-+.+....+.+.|.+.+.+... .-.+.+|+.+.+...+.
T Consensus 46 ~~D~l~~tvdY~~i~~~i~~~~~~~~~-~liE~la~~i~~~i~~~ 89 (119)
T d1b9la_ 46 TSEDINDALNYRTVTKNIIQHVENNRF-SLLEKLTQDVLDIAREH 89 (119)
T ss_dssp GGGTCSSCCCHHHHHHHHHHHHHTSEE-SCHHHHHHHHHHHHTCS
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 468888999999999999888765433 35778888888766543
No 10
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=9.79 E-value=1.3e+02 Score=19.60 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCCchhhhcccccCCCCCCCCceEEEEEEeCCCCCc
Q 010171 460 KFLLEHLVERAAECAGFSLEELMNVPAGRRRKYHDDVTVIVIILGTNKRA 509 (516)
Q Consensus 460 ~~la~~Ll~~A~~~~g~~~~~l~~~~~~~~R~~~DNITVIVI~l~~~~~~ 509 (516)
+.+++.+.+...+..| .-.|+|+|++-.+..+.|-
T Consensus 17 ~~l~~~it~~~~~~~g---------------~~~~~v~V~i~E~~~~nw~ 51 (59)
T d1otfa_ 17 ETLIRQVSEAMANSLD---------------APLERVRVLITEMPKNHFG 51 (59)
T ss_dssp HHHHHHHHHHHHHHHT---------------CCGGGCEEEEEEECGGGEE
T ss_pred HHHHHHHHHHHHHHhC---------------cCcccEEEEEEEeChhhEE
Confidence 3455666655555444 2379999999988887764
Done!