Query 010173
Match_columns 516
No_of_seqs 265 out of 1907
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 21:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.5E-53 3.2E-58 445.9 55.4 432 42-514 12-448 (455)
2 PRK10189 MATE family multidrug 100.0 4.7E-50 1E-54 423.0 58.5 433 42-514 24-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7E-49 1.5E-53 413.7 55.8 429 41-509 4-444 (464)
4 PRK10367 DNA-damage-inducible 100.0 3.7E-47 8.1E-52 397.3 55.3 426 43-513 5-434 (441)
5 PRK01766 multidrug efflux prot 100.0 6.6E-47 1.4E-51 398.9 55.4 433 41-513 6-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 4.7E-46 1E-50 391.4 54.2 423 43-508 8-435 (453)
7 KOG1347 Uncharacterized membra 100.0 1.6E-39 3.5E-44 337.8 31.1 435 43-515 24-458 (473)
8 TIGR01695 mviN integral membra 100.0 5E-34 1.1E-38 304.7 51.5 413 49-509 2-428 (502)
9 TIGR00797 matE putative efflux 100.0 2.7E-34 5.8E-39 291.5 44.1 337 55-394 1-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 1E-33 2.3E-38 301.1 50.1 413 50-508 2-433 (488)
11 PRK15099 O-antigen translocase 100.0 3E-31 6.5E-36 276.5 47.3 404 49-508 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.5E-27 3.3E-32 249.9 50.5 387 76-509 4-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.5E-25 3.3E-30 231.7 51.1 419 47-509 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 9.3E-25 2E-29 232.7 47.1 398 46-508 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 1.3E-22 2.7E-27 215.6 42.0 389 45-491 4-394 (480)
16 PRK00187 multidrug efflux prot 99.9 6.1E-20 1.3E-24 193.7 29.1 208 40-248 229-443 (464)
17 PRK10189 MATE family multidrug 99.9 1.3E-19 2.9E-24 191.5 30.5 213 41-254 253-467 (478)
18 COG0534 NorM Na+-driven multid 99.9 1.8E-19 3.9E-24 189.0 27.7 210 38-249 232-443 (455)
19 PRK01766 multidrug efflux prot 99.9 2.2E-19 4.8E-24 189.5 26.6 207 41-248 233-441 (456)
20 PRK10367 DNA-damage-inducible 99.8 7.3E-19 1.6E-23 184.1 27.6 206 264-508 6-211 (441)
21 PRK09575 vmrA multidrug efflux 99.8 1.4E-18 3E-23 183.0 28.2 207 40-249 227-436 (453)
22 TIGR01695 mviN integral membra 99.8 1.5E-16 3.3E-21 170.0 34.1 207 41-249 217-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.7 1.3E-14 2.8E-19 141.7 35.1 270 50-335 2-272 (273)
24 TIGR00797 matE putative efflux 99.7 1.5E-15 3.1E-20 154.1 25.4 194 275-508 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 2.2E-14 4.7E-19 150.6 33.1 207 41-249 192-403 (451)
26 TIGR02900 spore_V_B stage V sp 99.7 4.7E-15 1E-19 157.8 26.9 204 41-249 219-434 (488)
27 PF01554 MatE: MatE; InterPro 99.7 4E-17 8.7E-22 147.0 8.4 162 275-475 1-162 (162)
28 PF01554 MatE: MatE; InterPro 99.7 3.8E-17 8.2E-22 147.2 4.1 160 55-215 1-162 (162)
29 PRK10459 colanic acid exporter 99.7 6.7E-13 1.5E-17 141.6 36.5 202 41-248 201-404 (492)
30 COG0728 MviN Uncharacterized m 99.6 1.2E-12 2.5E-17 136.3 36.2 207 41-249 226-437 (518)
31 PRK15099 O-antigen translocase 99.6 7.1E-14 1.5E-18 145.8 27.3 202 40-248 208-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.8E-11 6.1E-16 116.8 34.9 247 66-335 3-251 (251)
33 COG2244 RfbX Membrane protein 99.5 6.7E-12 1.4E-16 133.4 28.4 187 42-234 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.1 3.6E-07 7.8E-12 97.3 33.1 419 50-508 4-469 (549)
35 KOG1347 Uncharacterized membra 99.1 1.1E-08 2.5E-13 107.1 19.8 205 263-508 24-229 (473)
36 PF07260 ANKH: Progressive ank 98.9 4.4E-06 9.5E-11 80.5 29.0 249 43-299 7-268 (345)
37 KOG2864 Nuclear division RFT1 98.8 8.8E-05 1.9E-09 74.7 36.1 415 45-508 6-448 (530)
38 PF14667 Polysacc_synt_C: Poly 98.3 0.00015 3.3E-09 63.6 18.9 79 169-249 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.3 0.00016 3.4E-09 77.4 22.2 203 46-249 252-470 (549)
40 KOG2864 Nuclear division RFT1 98.0 0.0019 4.1E-08 65.4 21.9 201 47-249 239-449 (530)
41 PF01943 Polysacc_synt: Polysa 97.8 0.0091 2E-07 57.7 22.9 184 273-508 5-190 (273)
42 PF14667 Polysacc_synt_C: Poly 97.6 0.00029 6.2E-09 61.9 8.8 79 391-509 2-80 (146)
43 PF13440 Polysacc_synt_3: Poly 97.5 0.025 5.4E-07 54.1 21.9 162 291-506 8-170 (251)
44 PF07260 ANKH: Progressive ank 97.4 0.071 1.5E-06 52.0 21.9 136 264-409 8-150 (345)
45 COG4267 Predicted membrane pro 96.4 1.3 2.8E-05 44.4 36.2 264 96-381 73-359 (467)
46 COG4267 Predicted membrane pro 52.2 2.8E+02 0.0061 28.4 19.8 135 320-508 76-210 (467)
47 PF11324 DUF3126: Protein of u 49.0 8.4 0.00018 28.2 0.9 15 433-447 4-18 (63)
48 TIGR00383 corA magnesium Mg(2+ 48.6 1.4E+02 0.003 29.7 9.9 24 488-511 294-317 (318)
49 PF04505 Dispanin: Interferon- 47.5 1.1E+02 0.0025 23.7 7.1 43 324-367 36-78 (82)
50 PF10775 ATP_sub_h: ATP syntha 44.4 10 0.00022 28.3 0.7 14 422-435 6-19 (67)
51 PRK09546 zntB zinc transporter 39.3 2.1E+02 0.0045 28.6 9.5 43 468-511 273-323 (324)
52 PF04235 DUF418: Protein of un 36.0 3E+02 0.0065 24.1 15.2 28 340-367 9-36 (163)
53 PF05975 EcsB: Bacterial ABC t 29.8 6.2E+02 0.014 25.9 17.8 41 118-158 88-130 (386)
54 cd02412 30S_S3_KH K homology R 25.3 51 0.0011 27.2 2.0 24 425-448 29-52 (109)
55 PF04505 Dispanin: Interferon- 24.1 3.4E+02 0.0074 21.0 6.7 33 108-140 41-73 (82)
56 PRK11085 magnesium/nickel/coba 21.2 7.6E+02 0.016 24.6 9.7 17 495-511 299-315 (316)
57 COG0342 SecD Preprotein transl 21.0 1.1E+03 0.023 25.5 11.7 86 413-502 398-484 (506)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.5e-53 Score=445.90 Aligned_cols=432 Identities=26% Similarity=0.398 Sum_probs=410.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 010173 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (516)
Q Consensus 42 ~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~ 121 (516)
.++..|+++++++|++++++.+.+++.+|+.++||+|++++++.++++++..++ ..+..|++.++.+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 566899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010173 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (516)
Q Consensus 122 ~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~ 200 (516)
++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..+...+.+.+|+.||+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777766 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hC-cchhHHHHHHHHHHHHHHHHHHHHHHhCCC--CcccccCCHHHHHHHHHHHHHHHHH
Q 010173 201 ISMAALIFHVFLNWILVAK-LN-YGIVGAAIAGDISLWLMVVGLVVYVTSGCF--PDAWTGFSLRAFKSLASFVKLSLAS 276 (516)
Q Consensus 201 ~~ii~~~l~i~l~~lli~~-~~-~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~~~p~ 276 (516)
.+++++++|+++|+++++. ++ +|+.|+++||++++.+.+++..+++.+++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988742 2322333334568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 010173 277 AVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSA 356 (516)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (516)
+++...+...+...+.+++++| ++++|+|+++.++.++..++..|++++.++++++++|+||+|++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 77999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHH
Q 010173 357 AFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKS 436 (516)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (516)
.+++..++++.++++++.++|++|+++.+.+..++++.+...++++++.+..+
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g--------------------------- 381 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG--------------------------- 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 010173 437 YLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKE 514 (516)
Q Consensus 437 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (516)
.+||.||++.++++++.+.|++.+|+.+++..++ +|..|+|+++..++.+..++..+++++++|+++
T Consensus 382 ----------~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T COG0534 382 ----------VLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK 448 (455)
T ss_pred ----------HHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998766 999999999999999999999999999999875
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.7e-50 Score=423.02 Aligned_cols=433 Identities=16% Similarity=0.184 Sum_probs=399.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 010173 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (516)
Q Consensus 42 ~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~ 121 (516)
..+..|++++.++|.++++++..+...+|+.+++++|++++|+++++.++..+. ..+..|++++.+++++|++|++|+|
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345689999999999999999999999999999999999999999999998875 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 010173 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS--QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVM 198 (516)
Q Consensus 122 ~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~ 198 (516)
++++..+.++.++..++++.+++ +++.+++..+++ .|+++.+.+..|+++..++.|+..+...+.+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 99999999999999999888776 788899999984 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHHHHHHHHHHHhC-C--CCccccc-CCHHHHHHHHHHH
Q 010173 199 TMISMAALIFHVFLNWILVAKL----NYGIVGAAIAGDISLWLMVVGLVVYVTSG-C--FPDAWTG-FSLRAFKSLASFV 270 (516)
Q Consensus 199 ~~~~ii~~~l~i~l~~lli~~~----~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~k~i~ 270 (516)
+..+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +...+++.+|+++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 262 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM 262 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence 9999999999999999999753 78999999999999999988876666543 2 1112222 1122457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010173 271 KLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAV 350 (516)
Q Consensus 271 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 350 (516)
+.|+|.+++.........+.+.+++.+| ++++|+++++.++.++..++..|++++.+|++++++|+||++++|+..+.
T Consensus 263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 263 GIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988888888888899998 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHH
Q 010173 351 SVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQ 430 (516)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (516)
+.+++..+++..++++.++++++.++|++|+++.+.+..++++.++..++++++.+..+
T Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g--------------------- 399 (478)
T PRK10189 341 VFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPA--------------------- 399 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010173 431 DLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTN 510 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (516)
.++|.||++.++++++.+.|++.+|+.++++...++|+.|+|++..+++.+..++.++++++.+
T Consensus 400 ----------------~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~ 463 (478)
T PRK10189 400 ----------------GLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGR 463 (478)
T ss_pred ----------------HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999998877899999999999999999999999999999
Q ss_pred cchh
Q 010173 511 WQKE 514 (516)
Q Consensus 511 ~~~~ 514 (516)
|+++
T Consensus 464 W~~~ 467 (478)
T PRK10189 464 WLWK 467 (478)
T ss_pred cccC
Confidence 9873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7e-49 Score=413.65 Aligned_cols=429 Identities=22% Similarity=0.296 Sum_probs=391.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
++++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4667899999999999999999999999999999999999999999999999876 788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~ 200 (516)
|++++..+.++.+..+++++..++..+.++++.+++.|+++.+.+.+|+++..++.|+..+....++++|+.|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988777655779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHHHHHHHHHHHhCCC--Cccc-ccCCHHHHHHHHHHHHHH
Q 010173 201 ISMAALIFHVFLNWILVAKL----NYGIVGAAIAGDISLWLMVVGLVVYVTSGCF--PDAW-TGFSLRAFKSLASFVKLS 273 (516)
Q Consensus 201 ~~ii~~~l~i~l~~lli~~~----~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~k~i~~~~ 273 (516)
.++++.++|+++++++++.. ++|+.|+++|+++++....+...+++++++. +.+. ++....+++.+|++++.+
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999753 4899999999999988887776666655321 1111 112223457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 010173 274 LASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVI 353 (516)
Q Consensus 274 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (516)
+|.+++.+++...+.+++.+++++| ++++++++++.++..+..++..|++++.+++++|++|+||+|++++..+.+..
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhhhhcccCC--ch---HHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhh
Q 010173 354 TSAAFGILFTLLVLAFENQFPKLFTD--KP---ILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNV 428 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (516)
++..++++.++++.++++++.++|++ |+ ++.+.+..++++.+++.++.+++.+..+
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~------------------- 381 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG------------------- 381 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------------------
Confidence 99999999999999999999999974 44 6888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 429 VQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
+++|.||++.++++++.+.|++++|+.+++.+.+++|+.|+|.++.+++.+..++...+++.
T Consensus 382 ------------------~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 382 ------------------AIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ------------------hHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999998876665544
Q ss_pred h
Q 010173 509 T 509 (516)
Q Consensus 509 ~ 509 (516)
+
T Consensus 444 ~ 444 (464)
T PRK00187 444 K 444 (464)
T ss_pred H
Confidence 3
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.7e-47 Score=397.28 Aligned_cols=426 Identities=16% Similarity=0.171 Sum_probs=373.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 010173 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHL-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (516)
Q Consensus 43 ~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~l-g~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~ 121 (516)
.+..|++++.++|.++++++..+++.+|+.+++++ |++++++++++.++..+. ..+..+++.+.++.++|++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45678999999999999999999999999999998 678999999999999876 8888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010173 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (516)
Q Consensus 122 ~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~ 200 (516)
++++..++++.++++++++..++ ..+.++++.+++.|+++.+.+.+|+++..++.|+..+..++.+++|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888766 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCC-CC-cccccCCHHHHHHHHHHHHHHHHHHH
Q 010173 201 ISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGC-FP-DAWTGFSLRAFKSLASFVKLSLASAV 278 (516)
Q Consensus 201 ~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~k~i~~~~~p~~l 278 (516)
.++++.++|+++++++++.+++|+.|+++|+.+++.+.+++..+++++++ .+ .+.+.++.+.++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777776531 11 11111222112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010173 279 MLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (516)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (516)
+...+...+.+.+.+++++| ++++++|+++.++.++..++..|++++.+|++++++|+||++++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 010173 359 GILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYL 438 (516)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (516)
+.+.++++.++++++..+|++|+++.+.+..++++.++..+....+.+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~----------------------------- 372 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDG----------------------------- 372 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999998876443334443333
Q ss_pred hhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010173 439 RKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQK 513 (516)
Q Consensus 439 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (516)
. -.|.++|. |++.++++++.+.|+..++. +.+|..|+|++..+++.++.+++..++++. |+|
T Consensus 373 --~--~~g~lrg~-dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 373 --M--FIGATRAA-EMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred --H--hhCccchH-HHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 0 01166665 79999999999887422222 247999999999999999999888877654 877
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=6.6e-47 Score=398.92 Aligned_cols=433 Identities=23% Similarity=0.405 Sum_probs=398.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
..++.+|++++.++|..++++...+...+|+.+++++|++++++++++.++.... ..+..|++.+..+.+++++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4466799999999999999999999999999999999999999999999987765 778899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
|+.++..+.++.+.+.+++++.++ +.+++++..+++.|+++.+.+..|+++.+++.++..+...+++++++.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999887776 7788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCc---ccccCCHHHHHHHHHHHHH
Q 010173 200 MISMAALIFHVFLNWILVAK----LNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPD---AWTGFSLRAFKSLASFVKL 272 (516)
Q Consensus 200 ~~~ii~~~l~i~l~~lli~~----~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~i~~~ 272 (516)
+.++++.++|+++++++++. +++|+.|+++++.+++.+..++..+++++++... .+.++...+++..|++++.
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 99999999999999999863 3589999999999999999998888776642111 1122222345778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010173 273 SLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSV 352 (516)
Q Consensus 273 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (516)
++|.+++...+...+.++..+++++| ++++++++++.++.++..++..|++++.++.+++++|+||++++++..+.+.
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHH
Q 010173 353 ITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDL 432 (516)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (516)
+++..++++.++++..+++++.++|++||++.+.+..++++..+..++.+++.+..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------- 379 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSG----------------------- 379 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010173 433 RLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQ 512 (516)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (516)
+++|.||++.++++++.+.|++.+|..+++...+++|+.|+|+++.+++++..++.+.++++.+||
T Consensus 380 --------------~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
T PRK01766 380 --------------ALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQ 445 (456)
T ss_pred --------------chhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888889999999999999999999999999888877
Q ss_pred h
Q 010173 513 K 513 (516)
Q Consensus 513 ~ 513 (516)
.
T Consensus 446 ~ 446 (456)
T PRK01766 446 P 446 (456)
T ss_pred H
Confidence 4
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.7e-46 Score=391.37 Aligned_cols=423 Identities=19% Similarity=0.219 Sum_probs=386.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 010173 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHL-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (516)
Q Consensus 43 ~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~l-g~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~ 121 (516)
++..|++++.++|..++++...+++.+|+.+++++ |+++++++++++++..+. ..+..+++.+.+++++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45779999999999999999999999999999995 999999999999999876 7788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010173 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (516)
Q Consensus 122 ~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~ 200 (516)
++++..+.++.++.+++++..++ ..++++++.+++.|+++.+.+.+|+++..++.++..+.....+.+|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999888776 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccCCHHHHHHHHHHHHHHHHHHH
Q 010173 201 ISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAW--TGFSLRAFKSLASFVKLSLASAV 278 (516)
Q Consensus 201 ~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~i~~~~~p~~l 278 (516)
.++++.++|+++++++++.+++|+.|+++|+++++.+.+++..+++++++...++ +.++ .+++.+|++++.|+|..+
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHH
Confidence 9999999999999999988889999999999999999999887777654322222 2222 245778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010173 279 MLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (516)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (516)
+.........+.+.+++++|+ ++++++++++.++..+..++..|++++..|.+|+++|+||+|++++..+.+.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999998888988889988884 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcccCC-chHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHH
Q 010173 359 GILFTLLVLAFENQFPKLFTD-KPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSY 437 (516)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (516)
+++.++++.++++++.++|++ ||++.+.+..++++.+++.++++++.+..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~---------------------------- 376 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASA---------------------------- 376 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 999999999999999999995 789999999999999999999999999999
Q ss_pred HhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 438 LRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 438 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
.++|.||++.++.+++... ++.+|..+++... +|+.|+|+++.+++.+..++.++++++
T Consensus 377 ---------~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 377 ---------YFMAVNQGGKALFISIGNM-LIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred ---------HHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 7899999998643 799999999999999988877766654
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=337.79 Aligned_cols=435 Identities=42% Similarity=0.694 Sum_probs=418.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 010173 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDM 122 (516)
Q Consensus 43 ~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~ 122 (516)
..+.|++++++.|.++..+.+...+.+++.++||+|+.++++.+++.+..+...+.+..|+..+..+..+|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 78889999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 010173 123 LGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMIS 202 (516)
Q Consensus 123 ~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ 202 (516)
...+.+++.......+++...++.+.+++...+++|+++...+..|.++..+..+..........++|+++++....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 203 MAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCL 282 (516)
Q Consensus 203 ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~ 282 (516)
....++|+++++++++..++|..|++++..+++.+.......+.........|..++.+ ++.++++++.++|.+++.|+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999998888765545566667766 79999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010173 283 ELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (516)
|+|.+.+..+..|.+++++.++++.+++.++..+.+++..+++.+.++++++++|+|+++.+|........+++..++..
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 010173 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIF 442 (516)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (516)
+..++...+.+..+|++|+++.+......++++...++++.+.+..+
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~G--------------------------------- 389 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSG--------------------------------- 389 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhh---------------------------------
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 010173 443 NIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEV 515 (516)
Q Consensus 443 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (516)
+.+|.|+++..+++++.+++++++|....+.+..++|..|+|.++..+..+++..+.....+++|++++
T Consensus 390 ----va~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~ 458 (473)
T KOG1347|consen 390 ----VARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQA 458 (473)
T ss_pred ----eEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHH
Confidence 999999999999999999999999999999988999999999999999888999999999999999875
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5e-34 Score=304.70 Aligned_cols=413 Identities=16% Similarity=0.105 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChhHHHH
Q 010173 49 IWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEF-AAVSVVQNVIEGFVYGIM-LGMGSALETLSGQAVGAGRFDMLGI 125 (516)
Q Consensus 49 il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v-~a~~ia~~i~~l~~~~~~-~gl~~a~~~~va~~~g~~~~~~~~~ 125 (516)
+.|.+.-..++++.+.+.+++|..++++ +|++++ ++++++.++.+.+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 899999 899999999876523333 468888777776654332 56676
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 010173 126 YLQRSFIVTGATA-LCLMPF-YIFATPFLKLL--SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMI 201 (516)
Q Consensus 126 ~~~~~l~~~~~~~-l~~~i~-~l~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~ 201 (516)
...........++ ++..++ +++++++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766665555444 444444 77788888877 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHH--HHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 010173 202 SMAALIFHVFLNWILVAKLNYGIVGAA--IAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVM 279 (516)
Q Consensus 202 ~ii~~~l~i~l~~lli~~~~~Gv~Gaa--ia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~ 279 (516)
+++.++++++..+++. .++|..|++ ++++++..+..++.+++.+|++.+.+. +++. +++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFNF-RDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCCC-CChhHHHHHHHHHHHHHH
Confidence 9999887766543333 468999988 999999999988887777664322211 1221 236789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010173 280 LCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLM-ISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (516)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (516)
.........++..+.+.++ +.++++|+.++++.+++.. +..+++++..|.+++++|+||++++++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877776 5589999999999998765 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcccCC----chHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHH
Q 010173 359 GILFTLLVLAFENQFPKLFTD----KPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRL 434 (516)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (516)
+++.++++.++++++.++|.+ |++..+.+..++++++++.++.+++.+..+
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------- 368 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLR------------------------- 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 999999999999999999976 567788999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010173 435 KSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 509 (516)
Q Consensus 435 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
.+++.||++.+++.++... ++++++++++.. .+|..|+|+++.+++.+..++..++.+|+
T Consensus 369 ------------~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 369 ------------AFYARKDTRTPFINSVISV-VLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ------------hhHhccCCccCHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987 789999998854 48999999999999999988887777664
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.7e-34 Score=291.46 Aligned_cols=337 Identities=33% Similarity=0.547 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 010173 55 PVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVT 134 (516)
Q Consensus 55 p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~~~l~~~ 134 (516)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++++.|++|+|++++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988865 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 010173 135 GATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLN 213 (516)
Q Consensus 135 ~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l~i~l~ 213 (516)
..++++.+++ +++++++..+++.|++..+.+..++++..++.++..+..+..+.+++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888776 888999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhC-cchhHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 214 WILVA-KLN-YGIVGAAIAGDISLWLMVVGLVVYVTSG-CFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAV 290 (516)
Q Consensus 214 ~lli~-~~~-~Gv~Gaaia~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~~~~~~~~ 290 (516)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++....+++..|+++++++|..++.+...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 7899999999999999999888777653 22222222222344788999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 010173 291 ILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFE 370 (516)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (516)
+.+++.++ ++++++|+++.++.++..++..+++++..|.+++++|+||+++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 6689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCchHHHHHHHHHHHHH
Q 010173 371 NQFPKLFTDKPILIRETSKLAYFL 394 (516)
Q Consensus 371 ~~i~~l~~~~~~~~~~~~~~l~~~ 394 (516)
+++.++|++||++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988887764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1e-33 Score=301.11 Aligned_cols=413 Identities=15% Similarity=0.144 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 010173 50 WEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQ 128 (516)
Q Consensus 50 l~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~ 128 (516)
.|.+.|.+++++...+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++++.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999998876444456999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 010173 129 RSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALI 207 (516)
Q Consensus 129 ~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~ 207 (516)
.+..+....+++.+++ ..+.+++...++++++. ..++++..+..++..+.....+.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999887766 67777777666665543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hCcchhHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc--cccCCHHHHHHHHHHHHHHHHHHHH
Q 010173 208 FHVFLNWILVAK-----LNYGIVGAAIAGDISLWLMVVGLVVYVTSGCF-PDA--WTGFSLRAFKSLASFVKLSLASAVM 279 (516)
Q Consensus 208 l~i~l~~lli~~-----~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~k~i~~~~~p~~l~ 279 (516)
+++.++..++.. .++|+.|+++++.+++.+..++..++++|++. +.+ +.+....+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776655542 23578888899999999999887766654421 111 1111223356889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010173 280 LCLELWYYTAVILMVGWLNN-----PE---IAVDAI-SICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAV 350 (516)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 350 (516)
+.........|+.++++..+ .+ ..++.| +++.++.+++..+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988875421 11 233333 4666778888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHH
Q 010173 351 SVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQ 430 (516)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (516)
+++.+..+++|.++++.++++++..++.+++ ++..+++++++..++.+++.+..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~--------------------- 372 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS--------------------- 372 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 9999999999999999999999999998644 357788999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 431 DLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
++++.||++..++.++.+. ++++++.+++...+++|+.|+|+++.+++++..++..++.+|
T Consensus 373 ----------------~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ----------------ILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred ----------------HHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 889999988854467999999999999999999988887765
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3e-31 Score=276.51 Aligned_cols=404 Identities=10% Similarity=-0.005 Sum_probs=335.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 010173 49 IWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYL 127 (516)
Q Consensus 49 il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~ 127 (516)
+.|.+.....+++...+.+++...+++| +|++++|.++...++..++......|++++..+.++++ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688888999999999999999999998 79999999999999988775555888888888899987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 010173 128 QRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAAL 206 (516)
Q Consensus 128 ~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~ 206 (516)
+.++.+.+..+++++++ +++.+|+...+..+++. ..++.+..+..+...+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776 88889998877766642 34566667767777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 207 IFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCF-PDAWTGFSLRAFKSLASFVKLSLASAVMLCLELW 285 (516)
Q Consensus 207 ~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~~~ 285 (516)
++|+.+ +++.... .|+.|+++|+++++.+..+...++++|++. +.+..+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 499999999999999988877766665422 111112222 347789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010173 286 YYTAVILMVG-WLNNPEIAVDAISICMNLQQ-WTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFT 363 (516)
Q Consensus 286 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (516)
....++.+++ .+| ++++|.|+++.++.+ +...+..+++++..|.++++ +|+++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 666 679999999999977 55788999999999999995 6789999999999999999999999
Q ss_pred HHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhh
Q 010173 364 LLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFN 443 (516)
Q Consensus 364 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (516)
+++.++++++.+++.+|+ ++++.++++++.++.++...+.....
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~---------------------------------- 352 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGY---------------------------------- 352 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 999999999999999876 66788899999999999888776665
Q ss_pred hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 444 IAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 444 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
.....++++.....++... ++.+|+++++.+ .+|..|++++..+++++...+..+...+
T Consensus 353 ---~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 353 ---LVIAKASLRFYILAEVSQF-TLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566766555555544 889999999854 5999999999999999998877766654
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=1.5e-27 Score=249.89 Aligned_cols=387 Identities=16% Similarity=0.145 Sum_probs=337.6
Q ss_pred hcChH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH
Q 010173 76 HLGEV-EFAAVSVVQNVIEGFVYGIM-LGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFL 152 (516)
Q Consensus 76 ~lg~~-~v~a~~ia~~i~~l~~~~~~-~gl~~a~~~~va~~~g~~~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~ 152 (516)
.+|+. +..+|.++.++.+++...+. .+++++..|...+.. ++++|+.++..+....+..+.++.++++ +++++++.
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36765 67799999999998744443 568999999999998 8889999999999888888877777766 88999999
Q ss_pred HHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCcc---hhHH
Q 010173 153 KLL--SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYG---IVGA 227 (516)
Q Consensus 153 ~~~--~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l~i~l~~lli~~~~~G---v~Ga 227 (516)
..+ +.+++..+.+.+.+++..+..++.++..++.+++++++|...+....++.++..++...++.. ..| +.+.
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~l 160 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYAL 160 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHH
Confidence 887 557788899999999999999999999999999999999999999999988776665444443 356 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 010173 228 AIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAI 307 (516)
Q Consensus 228 aia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (516)
++|.+++.++..++.....+|.+.+.+.+ ++.+ .++.|++++...|..+.....+.+..+++.+.+.++. .+++++
T Consensus 161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l 236 (451)
T PF03023_consen 161 AWGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHH
Confidence 99999999999999988888764432221 2222 2568999999999999999999999999999999884 489999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCC----chH
Q 010173 308 SICMNLQQWTLM-ISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTD----KPI 382 (516)
Q Consensus 308 ~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 382 (516)
+.+.++.+++.. +..+++++..|..++...+||.++.++..++.++....+.+|.++++..+++++.+++.. |++
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 999999999885 567999999999999999999999999999999999999999999999999999999862 566
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHH
Q 010173 383 LIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISI 462 (516)
Q Consensus 383 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 462 (516)
..+.+..++.+++++.++.+++.++.. .+++.||+|.++.+++
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r-------------------------------------~fya~~~~~~~~~~~~ 359 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSR-------------------------------------VFYALGDTKTPVRISV 359 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------------HHHHccCcHhHHHHHH
Confidence 788999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010173 463 ACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 509 (516)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
... ++++.+++++ .+.+|..|+.+++.++..+.+++++..++|+
T Consensus 360 ~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 360 ISV-VLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 8999999888 4459999999999999999999988888775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=1.5e-25 Score=231.74 Aligned_cols=419 Identities=14% Similarity=0.070 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHH
Q 010173 47 KKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEV-EFAAVSVVQNVIEGFVYGI-MLGMGSALETLSGQAVGAGRFDML 123 (516)
Q Consensus 47 k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~-~v~a~~ia~~i~~l~~~~~-~~gl~~a~~~~va~~~g~~~~~~~ 123 (516)
++++|.+.-....++++.+.+++...+++. +|+. ...++.+++++.+++--.+ -.+++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 467778888888899999999998888887 8984 7789999999999874444 345689999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHH-cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 124 GIYLQRSFIVTGATALCLMPF-YIFATPFLKL-LSQ--DKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 124 ~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~-~~~--~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
++...........+.+..+++ .++++.+... .+. |++....+....++..|..++.++.....+++++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 887777775666666666666 6777777734 333 233333678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 010173 200 MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVM 279 (516)
Q Consensus 200 ~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~ 279 (516)
+..+..++.-+....++.+.......+.+|+..++-+.+.++.+..++|.+...+.+ +..++ +..|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCCc-hhHHHHHHHHHHHHHH
Confidence 999999988886666666543223678899999999999999999999874333222 22222 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010173 280 LCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (516)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (516)
....++...+++.+.+.+.++ +++.++.+.++.+++. .+..+++++..|..|+...++|.++.++..+.+++++..+
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999844 8899999999999998 5668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcccCC----chHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHH
Q 010173 359 GILFTLLVLAFENQFPKLFTD----KPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRL 434 (516)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (516)
.+|.++++.++++|+.++... +++....+...+..++++.++..+..++..
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~------------------------- 377 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSR------------------------- 377 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------------------
Confidence 999999999999999998853 456688899999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010173 435 KSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 509 (516)
Q Consensus 435 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
.+++.+|+|.++.+++... +.++.++.++ .+.+|..|++.+..++..+++.++++..+|+
T Consensus 378 ------------~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 378 ------------VFYAREDTKTPMKIAIISL-VVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred ------------HHHHccCCCcChHHHHHHH-HHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 8899999776 5568999999999999988888887777664
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=9.3e-25 Score=232.68 Aligned_cols=398 Identities=11% Similarity=0.106 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Q 010173 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLG 124 (516)
Q Consensus 46 ~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~ 124 (516)
.++..+.+.+..++++.....+++...+++| +||+++|.++.+..+.+++......|++++.. +. .++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~---- 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH---- 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----
Confidence 3677888999999999999999999999999 89999999999999999875566777777642 21 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 010173 125 IYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISM 203 (516)
Q Consensus 125 ~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~i 203 (516)
+..+....+....+++..++ +.+++++..+++ +++. ...+++..+..++..+.....+.+++.++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 23445555666666655555 555555555544 3332 34677778888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 204 AALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLE 283 (516)
Q Consensus 204 i~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~ 283 (516)
...+...++.+.+... ++|+.+.+++..++..+..+......++ ++++++ ++ +++..|++++++.|...+....
T Consensus 150 ~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 8888877777666653 7899999999999998877655433333 222211 12 2366899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010173 284 LWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLM-ISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (516)
......|+.+++.+.+ ++++|.|+.+.++.+.+.. +...++++..|..++. ++|+++.++..+++.+....+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 6689999999999887654 4456788999999985 5788999999999999999999999
Q ss_pred HHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 010173 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIF 442 (516)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (516)
.+++.++++++..++.+++ +.++...++++++..++..+..+...
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~--------------------------------- 345 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS--------------------------------- 345 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 9999999999998887755 77889999999999999999999888
Q ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 443 NIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 443 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
.+++.||++..+..+++.. ++.+|..+.+. +.+|+.|+++++.+++.+...+..+...|
T Consensus 346 ----~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 346 ----LLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred ----HHHHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 77788877764 34899999999999999988877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=1.3e-22 Score=215.64 Aligned_cols=389 Identities=16% Similarity=0.147 Sum_probs=307.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 010173 45 ESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDML 123 (516)
Q Consensus 45 ~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~ 123 (516)
..++..|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|+..+..+.++++..++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45788899999999999999999999999999 89999999999999999886666799999999999998766555554
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 010173 124 GIY-LQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMIS 202 (516)
Q Consensus 124 ~~~-~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ 202 (516)
... ....+......+.+......+..+. ++ .....+.+..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 4444443333333333332222211 12 234457788999999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 203 MAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCL 282 (516)
Q Consensus 203 ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~ 282 (516)
+.. ..-+...+.+.. .......++...+..........+..+++........+. .++..|+.+++++|..+....
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 222222222221 244556677777776666665555542211111111111 347899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010173 283 ELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (516)
.......|..+++.+.+ ++++|.|+.++++......+..+++++..|..++...++|.++.++..+++.++...+++|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 010173 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIF 442 (516)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (516)
.+++.++++++..++.+++ +..+...++++++..++.++......
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~--------------------------------- 352 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSS--------------------------------- 352 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 9999999999999988765 45588999999999999999999999
Q ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHH
Q 010173 443 NIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGL 491 (516)
Q Consensus 443 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~ 491 (516)
.+++.|+++..++.+.... +.++.+++++ .+.+|+.|+..++
T Consensus 353 ----~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l--i~~~g~~g~~~a~ 394 (480)
T COG2244 353 ----LLQALGKQRLLLLISLISA-LLNLILNLLL--IPRFGLIGAAIAT 394 (480)
T ss_pred ----HHHHcCcchhhHHHHHHHH-HHHHHHHhHH--HHhhhhhhHHHHH
Confidence 9999999999999999988 8888888888 4558999999888
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=6.1e-20 Score=193.74 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=192.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (516)
Q Consensus 40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~ 119 (516)
+.+++..|++++.++|.++++++......+|+.+++++|++++++++++.++..+. ..+..|++++.+++++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45677899999999999999999999999999999999999999999999999975 88999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010173 120 FDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQ--DK---EISELAGKYSKWIVPQLFAYAINSPIQKFLQSQS 193 (516)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g 193 (516)
+|++++..+.++.++.+++++..++ +++.+++.+++.+ ++ ++.+.+..|+++.+++.++.+++.++.+.+||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999888776 8899999999853 33 6788999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 194 RVWVMTMISMAAL-IFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 194 ~~~~~~~~~ii~~-~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
+++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++.+..++....++.
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 999999999998878999999999999999988877666543
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=1.3e-19 Score=191.51 Aligned_cols=213 Identities=16% Similarity=0.098 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
.+.+.+|++++.++|..++.........+.+.+++++|++++++++++.++.++. +.+..|++++.++++++++|++|.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4667899999999999999999999999999999999999999999999999976 889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
|++++..+.+..++.+.++++.++ +++++++..+|.+|+++.+.+..++++.++..++.+++.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999999888777 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 010173 200 MISMAA-LIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDA 254 (516)
Q Consensus 200 ~~~ii~-~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~ 254 (516)
+.++++ +++.+++.+++.+..++|+.|+|++..+++.+..++..+.+++.++++.
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999988 5788899988887778999999999999999999988888777655443
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=1.8e-19 Score=188.96 Aligned_cols=210 Identities=22% Similarity=0.244 Sum_probs=198.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010173 38 FRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGA 117 (516)
Q Consensus 38 ~~~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~ 117 (516)
..+.+++..|++++.+.|..++++.......+.+.+++++|++.+|+++++.++.++. +.+..|++++.++++++++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 4467789999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010173 118 GRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (516)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~ 196 (516)
||+|++++..+.+..++..+++...++ +++++++.++|.+|+++.+.+..++++..+..++.+++.+..+.+||.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999999999999999999888776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 197 VMTMISMAA-LIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 197 ~~~~~~ii~-~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
.+++.++++ +.+.+++.+++.+.. +|..|.|++...++.+..+...++++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 577889988888765 8999999999999999999999888875
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=2.2e-19 Score=189.50 Aligned_cols=207 Identities=24% Similarity=0.228 Sum_probs=194.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
.+++.+|++++.++|..++.+.......+++.+++++|++++++++++.++.+++ ..+..|++.+.++.++|++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 4567799999999999999999999999999999999999999999999999976 889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
+++++..+.++.++..++++..++ +.+++++..++..|+++.+.+..++++..+..++.++.....+.+||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999887776 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 200 MISMAAL-IFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 200 ~~~ii~~-~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
..++++. ++++++.+++.+..++|+.|+++++.+++.+..++..+++++
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 789999999888778999999999999999999988777765
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=7.3e-19 Score=184.12 Aligned_cols=206 Identities=11% Similarity=0.151 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 010173 264 KSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKA 343 (516)
Q Consensus 264 ~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 343 (516)
++.|++++.++|.+++++.......+|+.+++++++ ++++++.+++.++.++...+..+++.+..+.+|+++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 567899999999999999999999999999999854 6689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhh
Q 010173 344 AKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSIS 423 (516)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (516)
+++..+.++..+...+++..++...+.+++..+++.||++.+.+.+++++..++.++..+..+..+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~-------------- 150 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLG-------------- 150 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 010173 424 VQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLV 503 (516)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~ 503 (516)
++++.||++.+++.+++.. ++++++.+++.+.+++|+.|+++++.+++.+..++..
T Consensus 151 -----------------------~lr~~G~~~~~~~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~ 206 (441)
T PRK10367 151 -----------------------WLLGVQYARAPVILLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGL 206 (441)
T ss_pred -----------------------HHHHcccchHHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 8899999999888889999999999999999887765
Q ss_pred HHHhh
Q 010173 504 IRMLQ 508 (516)
Q Consensus 504 ~~~~~ 508 (516)
+++++
T Consensus 207 ~~~~~ 211 (441)
T PRK10367 207 LMVRK 211 (441)
T ss_pred HHHHH
Confidence 55543
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.84 E-value=1.4e-18 Score=183.04 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010173 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGE-VEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAG 118 (516)
Q Consensus 40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~-~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~ 118 (516)
+.+++..|++++.+.|..++.....+...+.+.+++++|+ +++++++++.++..+. ..+..|++++.++.++|++|+|
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence 4567789999999999999999999999999999999985 6899999999999876 8899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010173 119 RFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQ-DKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (516)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~ 196 (516)
|+|++++..+.++.+++..+++..++ +.+++++..+|+. |+++.+.+.+|+++..++.++.++..+..+++||.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999888877 8899999999985 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 197 VMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 197 ~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
.+++.++...++++++.+++... +|+.|+|+++.+++.+..++...+++++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899888887653 7999999999999999888887766653
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=1.5e-16 Score=169.96 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
++++..|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++.++....+..+++++..|.++++.+++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34567899999999999999999999999998866689999999999999988753446789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQ----DKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRV 195 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~ 195 (516)
++.++..+++..+...++++.+++ ..+++++..++.+ |++..+.+..++++.+++.++..+.....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999888877 8899999988755 45678889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 196 WVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 196 ~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
+.+++.++...++|+++++++++. +|..|+++++.+++.+..++..++.+|+
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764 7999999999999999999888777764
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.75 E-value=1.3e-14 Score=141.68 Aligned_cols=270 Identities=15% Similarity=0.163 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 010173 50 WEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQ 128 (516)
Q Consensus 50 l~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~ 128 (516)
.|.+.....+++...+.+++...+++| +|++++|.++.+.++.+++......|++++..+..++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888899999999999999999998 89999999999999999875666899999998888887543 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 010173 129 RSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIF 208 (516)
Q Consensus 129 ~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l 208 (516)
.......+.+++........ ..+..++. . ..+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444433333332221 23333322 1 1122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 209 HVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYT 288 (516)
Q Consensus 209 ~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~~~~~~ 288 (516)
..+....+... +.+..+..++..++..+..++...+.+|+. +.+ ....+++..|++++.+.|..+..........
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666654 445889999999999999888888887642 122 2222247889999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 289 AVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNE 335 (516)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 335 (516)
.|..+++.+.+ .+++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876 67899999999999999999999999999999985
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.72 E-value=1.5e-15 Score=154.08 Aligned_cols=194 Identities=18% Similarity=0.191 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010173 275 ASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVIT 354 (516)
Q Consensus 275 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (516)
|.+++.........+++.++++++ ++++++++++.++..+...+..+++++..|.+++++|++|+|++++..+.....
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888899999999999999998 668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHH
Q 010173 355 SAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRL 434 (516)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (516)
...++++.++++.++++++.++++.|++..+.+..++++++++.++.+++....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~------------------------- 133 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRG------------------------- 133 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999987788889999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHh-hcC-CchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 435 KSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGY-GFK-LGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 435 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
++++.||.+..+..++.+. ++.++..+++.. .++ +|+.|++++..++.++..++.+++.+|
T Consensus 134 ------------~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 134 ------------FLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred ------------HHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887 788888888866 556 779999999999999998887766654
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.71 E-value=2.2e-14 Score=150.64 Aligned_cols=207 Identities=17% Similarity=0.203 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
...+..|++++...|..++.....+...+|+.+.+.+++..+++++.+.++.++....+..++++...|..++...++|.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34556899999999999999999999999999999999999999999999999876778889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS----QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRV 195 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~ 195 (516)
++.++..++.+.....+.++.++. +.+++|+++.+. .+++..+.....+.+.+++.|+.++...+...+.+.+|+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999877 899999997763 255667888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 196 WVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 196 ~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
|.++..++++.++|++++.++.+. +|..|.++++.++..+.+++.+..++|+
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888865 8999999999999999999999888875
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=4.7e-15 Score=157.83 Aligned_cols=204 Identities=14% Similarity=0.131 Sum_probs=175.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh------H---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGE------V---EFAAV-SVVQNVIEGFVYGIMLGMGSALET 109 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~------~---~v~a~-~ia~~i~~l~~~~~~~gl~~a~~~ 109 (516)
.+++.+|++++.+.|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..+. ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 446789999999999999999999999999999987 422 1 23333 3555666665 6678899999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 110 LSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKF 188 (516)
Q Consensus 110 ~va~~~g~~~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~ 188 (516)
.++++.|++|+|+.++..++...+...++++.++. ..+++++..++.+++ .+.+++++.++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776 888999998886543 2567899999999999999999999
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 189 LQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 189 l~a~g~~~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
+++.||+|.+++.+++..++|++++++++..+.+|+.|+++++++++.+..++..+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888743458999999999999999999988887663
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=4e-17 Score=147.04 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010173 275 ASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVIT 354 (516)
Q Consensus 275 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (516)
|.+++.+++.....+++.+++++| ++++++++++.++.++..++..|++++..+.+|+++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999996 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHH
Q 010173 355 SAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRL 434 (516)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (516)
+.+++++.+++..++.+++..+|++|+++.+.+.+++++..++.++..+.....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 133 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSG------------------------- 133 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCC-------------------------
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHH
Q 010173 435 KSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGAL 475 (516)
Q Consensus 435 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 475 (516)
+++|.||++.+++.++...|++++|++|+
T Consensus 134 ------------~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 134 ------------ILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp ------------CCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999874
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.66 E-value=3.8e-17 Score=147.23 Aligned_cols=160 Identities=22% Similarity=0.379 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 010173 55 PVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVT 134 (516)
Q Consensus 55 p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~~~l~~~ 134 (516)
|..++++...+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.++|++|++|+|++++..+..+.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999986 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH-HHHHHH
Q 010173 135 GATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAAL-IFHVFL 212 (516)
Q Consensus 135 ~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~-~l~i~l 212 (516)
..++++..++ ..+.+++..+++.|+++.+.+..|+++..++.++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999998887 89999999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 010173 213 NWI 215 (516)
Q Consensus 213 ~~l 215 (516)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.65 E-value=6.7e-13 Score=141.56 Aligned_cols=202 Identities=12% Similarity=0.033 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~ 119 (516)
.+++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.++....+...++....|..++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 345678999999999999999999999999999998 79999999999999988754555666778888999885 578
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 010173 120 FDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVM 198 (516)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~ 198 (516)
+++.++.+++...+...++++..+. ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 8889999999999999889888876 888999987776554 5678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 199 TMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 199 ~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
+..+++..+++++..+.+.. .+|+.|+++++.+++.+...+..++..|
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887766664 3799999999999999988888877745
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.65 E-value=1.2e-12 Score=136.33 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=188.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 41 ~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
.+.+..|++.+...|..++...+++...+|+.+.+.+.+..++.+..+.++.++..-.+..++++...|.+|+...++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 34467899999999999999999999999999999999999999999999999886789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS----QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRV 195 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~ 195 (516)
++.++..+.++.++.+++++..+. ..+++|+...+. -+++....+...+...+++.++..+..++...+.+++|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999987 899999997762 234446677888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 196 WVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 196 ~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
|.|+++.+++.++|+.+++.+... +|..|.++++.++..+.+.+.++..+|+
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999776654 7888999999999999999888888875
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=7.1e-14 Score=145.79 Aligned_cols=202 Identities=8% Similarity=-0.034 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010173 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVG-HLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAG 118 (516)
Q Consensus 40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~-~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~ 118 (516)
+.+++.+|++++++.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 456788999999999999999999999999999997 599999999999999988544778999999999999995 5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 010173 119 RFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWV 197 (516)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~ 197 (516)
|+|+.++..++.......++++..++ .+++++++.++.+++ ++.+.+++++++++..+..........+-+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999998888888777766 789999999987765 445678899999999888887777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 198 MTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 198 ~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
.....+...++++++++++++. +|..|+++++.+++++..++..+...+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999975 799999999999999999877765544
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.57 E-value=2.8e-11 Score=116.77 Aligned_cols=247 Identities=16% Similarity=0.169 Sum_probs=180.0
Q ss_pred HHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 66 ITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF 144 (516)
Q Consensus 66 ~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~~~l~~~~~~~l~~~i~ 144 (516)
.+++...+++| +|++++|.++....+..+.......|+.+.... ..++|+++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888 899999999999999998755456677666433 234566667777666665555544444333
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCcch
Q 010173 145 YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGI 224 (516)
Q Consensus 145 ~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l~i~l~~lli~~~~~Gv 224 (516)
...+..++ .+++ ...++....+..+.........+.+++++|.+......+...+.......++... +.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11122233 3332 2234566677788889999999999999999999999999988775555444443 4588
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 010173 225 VGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAV 304 (516)
Q Consensus 225 ~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (516)
.+..++..++.++..++.+...+++ .+.++ +.+..| .++.+.|..+...........+..+++.+.+ .+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~-~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK---LRLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG-PEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cCCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHH
Confidence 8899999999988877766544322 11111 112334 7899999999999999999999999998433 6799
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 010173 305 DAISICMNLQQWTL-MISLGFHTAISVRVSNE 335 (516)
Q Consensus 305 ~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~ 335 (516)
|.|+++.++.+.+. .+..++++...|.++|.
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999888 89999999999999873
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.52 E-value=6.7e-12 Score=133.45 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (516)
Q Consensus 42 ~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~ 120 (516)
.++..|++++.+.|....++...+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++....|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47889999999999999999999999999999998 7999999999888888865 888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
++.++..++...+...++++..++ ..+++|+...+.+++ +..+...+.++++..++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998887 888989998776654 33377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHH
Q 010173 200 MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDIS 234 (516)
Q Consensus 200 ~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~ 234 (516)
..+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999965 7889999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.09 E-value=3.6e-07 Score=97.30 Aligned_cols=419 Identities=12% Similarity=0.032 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 010173 50 WEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIE-GFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYL 127 (516)
Q Consensus 50 l~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~-l~~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~ 127 (516)
.+.+...++.+++..+.+++-+.++-| ++|+.+|..++=..+.. .+.+.-=.++..+.++.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345667788888888888887777666 89999888855444432 2224455677777655433331122333333333
Q ss_pred HHHHHHHHHHHHHHHHH-H-HhhHHH----HHHcCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcC
Q 010173 128 QRSFIVTGATALCLMPF-Y-IFATPF----LKLLSQD-KE---ISELAGKYSKWIVPQLFAYAINSPI----QKFLQSQS 193 (516)
Q Consensus 128 ~~~l~~~~~~~l~~~i~-~-l~~~~i----~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~l~~~~----~~~l~a~g 193 (516)
+....+..++.+++..+ + ....|. ..+...+ ++ ..+.....+.+...+.....+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 33333333333322222 1 111111 1111111 11 1111222233333344433333443 33333444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-Ccch------hHHHHHHHHHHHHHHHHHHHHHHh-CCCC-----cccccCCH
Q 010173 194 RVWVMTMISMAALIFHVFLNWILVAKL-NYGI------VGAAIAGDISLWLMVVGLVVYVTS-GCFP-----DAWTGFSL 260 (516)
Q Consensus 194 ~~~~~~~~~ii~~~l~i~l~~lli~~~-~~Gv------~Gaaia~~i~~~i~~~~~~~~~~~-~~~~-----~~~~~~~~ 260 (516)
|.+.-..+.....+.+..+........ +++. .-+.++...+++...+........ .... ...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 444455555555555544443332210 0111 112344455555544333221111 1111 11111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010173 261 ---RAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGW--LNNPEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSN 334 (516)
Q Consensus 261 ---~~~~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~ 334 (516)
+....-+++.+.......+.+.-.+...-+.+++.+ +.+ .++-|.|++++|+.++.. ++...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 010123677888888888888888888888888888 666 457799999999988754 6778899999999998
Q ss_pred HhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHH
Q 010173 335 ELGAGHP---------KAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQA 405 (516)
Q Consensus 335 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 405 (516)
...++++ +++.+.....++....+++.+...-...++.+.+++.++.-....+...++.+....++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8876543 3355556666666666666655555555566666665433223345788999999999999999
Q ss_pred HHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHH---HHHHHHhhhHHHHHHHhhcCC
Q 010173 406 VLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALIS---IACYYVFGLPAGALLGYGFKL 482 (516)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 482 (516)
+... ..++....+..-..+ .+.. ++.+..++++..+ ++
T Consensus 403 i~Ea-------------------------------------F~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~ 443 (549)
T PF04506_consen 403 ITEA-------------------------------------FVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GL 443 (549)
T ss_pred HHHH-------------------------------------HHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cC
Confidence 9999 777766665543333 2333 5556677777665 79
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 483 GINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 483 g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
|..|..+|-.+...++.+....+.++
T Consensus 444 G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 444 GAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777765
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.05 E-value=1.1e-08 Score=107.13 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 010173 263 FKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQW-TLMISLGFHTAISVRVSNELGAGHP 341 (516)
Q Consensus 263 ~~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 341 (516)
+.+.|++++++.|..+....+.....+...+++++|+ .+.++.++++...+. ...+..++..+..+.+++.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 4778999999999999999999999999999999994 488999999888776 4567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhh
Q 010173 342 KAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLS 421 (516)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (516)
+......+++.......+++.+.+. .+.+++...+..||++.+.+..+.++.....+-+.....+..
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~------------ 168 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAK------------ 168 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHH------------
Confidence 9999999999999998888887754 455999999999999999999999999999999999998888
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 010173 422 ISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTV 501 (516)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~ 501 (516)
.+++.++.....+++..+. ++.+++.+++.+..++|..|+..+..+++.+....
T Consensus 169 -------------------------~lq~Q~~~~~~~~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~ 222 (473)
T KOG1347|consen 169 -------------------------FLQAQSITLPLLVIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRI 222 (473)
T ss_pred -------------------------HHHhccCchHHHHHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHH
Confidence 8889999999899998888 99999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 010173 502 LVIRMLQ 508 (516)
Q Consensus 502 ~~~~~~~ 508 (516)
+..+..-
T Consensus 223 l~~yi~~ 229 (473)
T KOG1347|consen 223 LLLYAVL 229 (473)
T ss_pred HHHHhee
Confidence 7776654
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.90 E-value=4.4e-06 Score=80.47 Aligned_cols=249 Identities=13% Similarity=0.053 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLG--E-VEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (516)
Q Consensus 43 ~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg--~-~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~ 119 (516)
.....++.++-.|+.++.....+...+.+.-+++-. + +.+++|+++.++.-++ ..+...+.+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 345679999999999999999999999898888732 2 4599999999998876 667777777654444 333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-H-HhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010173 120 FDMLGIYLQRSFIVTGATALCLMPF-Y-IFATPFL-KLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (516)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~l~~~i~-~-l~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~ 196 (516)
+++.+. .......+.+..++..++ + .+...++ ..++.++++.+.++..+.++.+..++.++....+|++.-++++.
T Consensus 81 rsrr~~-vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRKA-VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 333222 222222222222222222 2 2333333 56688999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcch-hHHH---HHHHHHHHHHHHH--HHHHHHhCCCCcccccCCHHHHHHHHHHH
Q 010173 197 VMTMISMAALIFHVFLNWILVAKLNYGI-VGAA---IAGDISLWLMVVG--LVVYVTSGCFPDAWTGFSLRAFKSLASFV 270 (516)
Q Consensus 197 ~~~~~~ii~~~l~i~l~~lli~~~~~Gv-~Gaa---ia~~i~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ 270 (516)
.....++...+..+++..++... +... ..+. .+...+..+.+-+ +-++..-++..+.....+.++...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77666666655555555445532 1111 1111 2222222222211 11221111112222222233336789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 010173 271 KLSLASAVMLCLELWYYTAVILMVGW-LNN 299 (516)
Q Consensus 271 ~~~~p~~l~~~~~~~~~~~~~~~~~~-~~~ 299 (516)
++.+|.+.........-.+++.++++ +++
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999 544
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=8.8e-05 Score=74.69 Aligned_cols=415 Identities=13% Similarity=0.043 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---h
Q 010173 45 ESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR---F 120 (516)
Q Consensus 45 ~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~-lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~---~ 120 (516)
...+-.+.+...+..+++..+.+++.+.++=| ++++.+|..++-..+.+- -..-++.-.........|..+ .
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s----TiLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS----TILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH----HHHHhhHHHHHHHhccCCCCCCccH
Confidence 34455666677777888887777776665555 899999988776655541 112223322233333344333 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 121 DMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKE-ISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
++..+..+.+.-+..++.+.+.-+++- ... ..|+. ..+.-..-..+..++...-.+...+.-..|..-+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl~--~~~---s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWLG--FLS---SSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHH--Hhh---ccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 355555555555555555444333111 100 01111 001111112233333333334444445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH-Hh-CcchhHHHHHHHHHHHHHHHHHHH-HHHhCC-CCcc---------cccCCHH--HHH
Q 010173 200 MISMAALIFHVFLNWILVA-KL-NYGIVGAAIAGDISLWLMVVGLVV-YVTSGC-FPDA---------WTGFSLR--AFK 264 (516)
Q Consensus 200 ~~~ii~~~l~i~l~~lli~-~~-~~Gv~Gaaia~~i~~~i~~~~~~~-~~~~~~-~~~~---------~~~~~~~--~~~ 264 (516)
+..-+..++.-+..+.... +. ++++..-|+|.........+...+ |++.++ .+.. .++.... ...
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 6666666555333333332 21 345555566665555444442222 222222 1000 0111100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Q 010173 265 SLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNP-EIAVDAISICMNLQQWT-LMISLGFHTAISVRVSNELGAGHPK 342 (516)
Q Consensus 265 ~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 342 (516)
.-++..+.-.....+.++-++...-+..++++.... -.+-|.|.+.+|..++. -++...+-.......++....++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 113334444444455556666666666666543220 12456899999997764 4777889999999999998888777
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhh
Q 010173 343 AAKFSIA---VSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILS 419 (516)
Q Consensus 343 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (516)
+.|+... ...+....+++.+...-...+++...+++++.-.--.+...+++++..+++.+++.+..+
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa---------- 386 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA---------- 386 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH----------
Confidence 7666554 444445555544444444555666666655322222356789999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHH---HHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 010173 420 LSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALIS---IACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCL 496 (516)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~ 496 (516)
.+.+.+..+.....+ .+.. ++.+..++++..+ +|..|..+|-.+...
T Consensus 387 ---------------------------F~~A~~t~~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~ 436 (530)
T KOG2864|consen 387 ---------------------------FAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMS 436 (530)
T ss_pred ---------------------------HHHHhccHHHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 777777666544333 3333 6667888888665 788999999988888
Q ss_pred HHHHHHHHHHhh
Q 010173 497 FQTTVLVIRMLQ 508 (516)
Q Consensus 497 ~~~~~~~~~~~~ 508 (516)
++-+....+.++
T Consensus 437 lRIlys~~fI~~ 448 (530)
T KOG2864|consen 437 LRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHHHHHH
Confidence 887766555544
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.26 E-value=0.00015 Score=63.64 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 169 SKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 169 l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
+++++++.++..+.......+++.||+|..+..++++.++|+++++++++. +|..|+++++.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999864 899999999999999999988888877
Q ss_pred C
Q 010173 249 G 249 (516)
Q Consensus 249 ~ 249 (516)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.26 E-value=0.00016 Score=77.36 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--
Q 010173 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH--L-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF-- 120 (516)
Q Consensus 46 ~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~--l-g~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~-- 120 (516)
-++.++.+.....+++...+.+--|++++.. + ..++-|.|++++++-++++-.+...+..+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4688889999999999999999999999997 5 7789999999999999988899999999998899988776543
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010173 121 -------DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQ 192 (516)
Q Consensus 121 -------~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~ 192 (516)
++..+.+...+.+...++++...+ ...++.++.+++++.=....+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 334556677777777777666655 666777777765432222335678899999999999999999999988
Q ss_pred CchhHHHHH---HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 193 SRVWVMTMI---SMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 193 g~~~~~~~~---~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
...+..... .....++.+..++++... ++|..|..+|.++...+..+....+.+|.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654443 344456677778888876 78999999999999999999998888775
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.0019 Score=65.37 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 010173 47 KKIWEIAGPVILASGSEFSITFVTAAFVGH---LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDML 123 (516)
Q Consensus 47 k~il~~a~p~~l~~~~~~l~~~v~~~~i~~---lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~~~ 123 (516)
++..+......-+.++..+.+--|.++++- +.-++-|.|..+++.-++++-.+...+......+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 355555555666777777788888888873 45567788888888888888888999999999999999888887776
Q ss_pred HHHH---HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 124 GIYL---QRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 124 ~~~~---~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
++.. ...+.+...++++.+.. ...+++++.+++++.=....+...+++.+..+|+.+++.+..++..+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 6644 44455555566555544 5566777777765432223345779999999999999999999998877665433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 200 ---MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 200 ---~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
...++.+++.++++++++-. +|..|...|.++...+..+...++.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567788899999976 6779999999999998888887777764
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.77 E-value=0.0091 Score=57.68 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010173 273 SLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMI-SLGFHTAISVRVSNELGAGHPKAAKFSIAVS 351 (516)
Q Consensus 273 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 351 (516)
+......+........+...++.+..+ .++.|.|+....+.++...+ ..|++++..-.+++...+ .+..+......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~ 81 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSV 81 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence 334444455455555555555555443 66899999999999888776 578888887777765433 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHH-HHhHHHHHHhccchhhhhhhhhhhhhhhhhHH
Q 010173 352 VITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATI-FLNSIQAVLLGNCYYARQILSLSISVQKNVVQ 430 (516)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (516)
.......++.......... .+.+ ++... . ..++.... ++.........
T Consensus 82 ~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~--------------------- 130 (273)
T PF01943_consen 82 LFLLLIFSLIFLLILLIAS-----FFGN-PSLSL---I-LIILALLILILSSLSSVFSG--------------------- 130 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HcCC-chHHH---H-HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3333332222222222222 3333 32111 1 12222222 46667777777
Q ss_pred HHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 431 DLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
.+++.++.+.....++... +..+.....+... ..+..+...+..++.++...+.....+|
T Consensus 131 ----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 131 ----------------LLQGLQRFKYIAISNIISS-LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777776 4444444444322 3448888899999998887777766664
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.62 E-value=0.00029 Score=61.86 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhh
Q 010173 391 AYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGL 470 (516)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 470 (516)
+++++++.++.++...... ++++.||++..+..++++. ++++
T Consensus 2 l~il~~~~~~~~l~~~~~~-------------------------------------il~~~~k~~~~~~~~~~~~-~v~i 43 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGS-------------------------------------ILQAMGKTKWPFIITLIGA-IVNI 43 (146)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------------HHHHcCCchHHHHHHHHHH-HHHH
Confidence 5788999999999999989 9999999999999999998 9999
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010173 471 PAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 509 (516)
Q Consensus 471 ~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (516)
++++.+ .+++|..|++.++.+++.....+..+..+|.
T Consensus 44 ~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 44 ILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5569999999999999999999888888774
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.54 E-value=0.025 Score=54.06 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=104.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010173 291 ILMVGWLNNPEIAVDAISICMNLQQWTLMI-SLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAF 369 (516)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (516)
..++++.-+ .++.|.|+....+..+...+ ..|+.+...- ..++|+++.++..+......+..++...++....
T Consensus 8 ~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 8 LILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 66899999999998888776 4566555432 2346667777777766655555444444332222
Q ss_pred hhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 010173 370 ENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAV 449 (516)
Q Consensus 370 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (516)
.. .+ ++++ ....+.++++..++..+.....+ .++
T Consensus 82 ~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~l~ 115 (251)
T PF13440_consen 82 AY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRS-------------------------------------ILR 115 (251)
T ss_pred HH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHH
Confidence 22 33 3332 23445566777788888888888 999
Q ss_pred ccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010173 450 GAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRM 506 (516)
Q Consensus 450 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 506 (516)
+.+|.+.......... +..+.....+. ..+.+..+..++..++.++..++.+...
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 116 ARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWSILLAFIISALLALLISFYLL 170 (251)
T ss_pred HcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888887 44433333333 2234888888998888888776655533
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.37 E-value=0.071 Score=52.03 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 010173 264 KSLASFVKLSLASAVMLCLELWYYTAVILMVGW-LNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPK 342 (516)
Q Consensus 264 ~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 342 (516)
.+.+++.++.+|.+++.......-.+.+.-+++ ..++.+.+|+|+++..+.-+...+...+.+.....+... .+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~-----rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK-----RS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----hh
Confidence 567899999999999999999999999988876 455456799999999999999999988888776666431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----Hch-hhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 010173 343 AAKFSIAVSVITSAAFGILFTLLVL-----AFE-NQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLG 409 (516)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 409 (516)
++.. +....+.+...+.+.. -++ -.+-+++.-+|++.+.+...+.++.+..+++++.....|
T Consensus 83 --rr~~---vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qG 150 (345)
T PF07260_consen 83 --RRKA---VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQG 150 (345)
T ss_pred --hHHH---HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222 2222223333322211 112 234455666899999999999999999999999999999
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.36 E-value=1.3 Score=44.38 Aligned_cols=264 Identities=10% Similarity=0.086 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 010173 96 VYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQ 175 (516)
Q Consensus 96 ~~~~~~gl~~a~~~~va~~~g~~~~~~~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~ 175 (516)
...+..|++...++.+|...=++|.+++...+.....+....+...... +-...++... ... ......
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si---~yk--~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSI---VYK--ILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhH---HHH--HHHHHH
Confidence 3556778888888999988888888777766655554444444333211 1111222211 111 122334
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q 010173 176 LFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAW 255 (516)
Q Consensus 176 ~~~~~l~~~~~~~l~a~g~~~~~~~~~ii~~~l~i~l~~lli~~~~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~~ 255 (516)
...++..-+...++.+.+|.+.....-.++.++...+..++-. .++.|..++..++..+.......+..|.-...+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 4555555666778899999999999999999888888877764 5899999999999999988888887775111111
Q ss_pred ccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHH-----HH
Q 010173 256 TGFSLRA-FKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVD------AISICMNLQQWTLMIS-----LG 323 (516)
Q Consensus 256 ~~~~~~~-~~~~k~i~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~ 323 (516)
..++.-+ .+....++-.|. .-...-.+++.+.-..+++++-.+ -|-+..-.......|. ..
T Consensus 218 i~FdFL~~~~~y~SLllIg~-------FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 218 IGFDFLLYRRKYPSLLLIGF-------FYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred cceehhhhhhcchHHHHHHH-------HHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 2222211 122223333322 222222333333222221111111 1222222222222222 23
Q ss_pred HHHHHHHHHHHHh----cCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCCch
Q 010173 324 FHTAISVRVSNEL----GAGH-------PKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKP 381 (516)
Q Consensus 324 ~~~a~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 381 (516)
+.|...+.--+.+ |.|. .++....++....-..-+-...++.+.++++.+..++.-++
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~ 359 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE 359 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 4444444333222 1122 23334444555555556667788889999999998887655
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=52.19 E-value=2.8e+02 Score=28.43 Aligned_cols=135 Identities=19% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHH
Q 010173 320 ISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIF 399 (516)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~ 399 (516)
+..+++-.+.-.+|+.+=+++.+++...+.-+..+....+..++..+....+ ++ ....+.+ .....+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~~--------~~---si~yk~l--~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNN--------QY---SIVYKIL--ACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhcC--------ch---hHHHHHH--HHHHHH
Confidence 3455666666677888878888888888887777777777777653322221 11 1122222 222233
Q ss_pred HhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhh
Q 010173 400 LNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG 479 (516)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (516)
..+...+... .+.+.++.+.....-..+. +....++.++-.
T Consensus 143 ~m~~~Wi~~i-------------------------------------FlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~- 183 (467)
T COG4267 143 GMSLVWILMI-------------------------------------FLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK- 183 (467)
T ss_pred HHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-
Confidence 4444445555 7778888776554444444 666777666644
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 480 FKLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 480 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
.++.|..++..+|..+.......+..+
T Consensus 184 --~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 184 --SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred --hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 699999999999988876665555544
No 47
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=49.03 E-value=8.4 Score=28.21 Aligned_cols=15 Identities=40% Similarity=0.944 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhhhhh
Q 010173 433 RLKSYLRKIFNIAGV 447 (516)
Q Consensus 433 ~~~~~~~~~~~~~~~ 447 (516)
||..|||+.|++.++
T Consensus 4 klq~yLr~~f~n~~i 18 (63)
T PF11324_consen 4 KLQAYLRRTFGNPGI 18 (63)
T ss_pred HHHHHHHHHhCCCce
Confidence 789999999988765
No 48
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.64 E-value=1.4e+02 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 010173 488 WSGLLLGCLFQTTVLVIRMLQTNW 511 (516)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~ 511 (516)
+...+...++.++..+++++|++|
T Consensus 294 y~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 294 YPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444445555667888888888
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=47.49 E-value=1.1e+02 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 324 FHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVL 367 (516)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (516)
++...+..+-+.+.+||.+++++.-+++.+++.+ ++.++++..
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~i-a~~~g~~~~ 78 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSII-AIIIGIVII 78 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHH-HHHHHHHHH
Confidence 4444455778888899999999999988877754 334444433
No 50
>PF10775 ATP_sub_h: ATP synthase complex subunit h; InterPro: IPR019711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit H found in the F0 complex of F-ATPases from fungal mitochondria. Subunit H is homologous to the mammalian factor F6, and is essential for the correct assembly and/or functioning of F-ATPases, since yeast cells lacking it are not able to grow on non-fermentable carbon sources. Subunit H occupies a central place in the peripheral stalk between the F1 sector and the membrane [].
Probab=44.38 E-value=10 Score=28.26 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=11.4
Q ss_pred hhhhhhhHHHHHHH
Q 010173 422 ISVQKNVVQDLRLK 435 (516)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (516)
-..++|+||||-||
T Consensus 6 ~~~r~d~VQDLYLk 19 (67)
T PF10775_consen 6 TPRRADLVQDLYLK 19 (67)
T ss_pred ccccccHHHHHHHH
Confidence 56789999999655
No 51
>PRK09546 zntB zinc transporter; Reviewed
Probab=39.31 E-value=2.1e+02 Score=28.59 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhhc-CC------c-hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010173 468 FGLPAGALLGYGF-KL------G-INGIWSGLLLGCLFQTTVLVIRMLQTNW 511 (516)
Q Consensus 468 ~~~~~~~~l~~~~-~~------g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (516)
+.+|..++-+.+. ++ + -+|-+ ..++..++.++..+++++|++|
T Consensus 273 IflPlT~IaGiyGMNf~~mPel~~~~gy~-~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGLFGVNLGGIPGGGWPFGFS-IFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhhhccccCCCCCcCCcchHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 4457777655431 11 1 12333 3333444555567778888888
No 52
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=36.01 E-value=3e+02 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010173 340 HPKAAKFSIAVSVITSAAFGILFTLLVL 367 (516)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (516)
|.++-++..++....++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777776665
No 53
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=29.83 E-value=6.2e+02 Score=25.91 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH-HcCCC
Q 010173 118 GRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLK-LLSQD 158 (516)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~-~~~~~ 158 (516)
.++++.+++.+.+...+.....+..++ ....-|+.. ..+.+
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357789999999999999988776655 666667765 33433
No 54
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.30 E-value=51 Score=27.19 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhh
Q 010173 425 QKNVVQDLRLKSYLRKIFNIAGVA 448 (516)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l 448 (516)
-+.+.||.+++.||.|.|..+|+-
T Consensus 29 ~~~l~ed~~IR~yL~k~~~~agis 52 (109)
T cd02412 29 AELLHEDLKIRKFIKKKLKKAGIS 52 (109)
T ss_pred HHHHHhHHHHHHHHHHHHhhCCcc
Confidence 356789999999999999887654
No 55
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=24.13 E-value=3.4e+02 Score=20.99 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q 010173 108 ETLSGQAVGAGRFDMLGIYLQRSFIVTGATALC 140 (516)
Q Consensus 108 ~~~va~~~g~~~~~~~~~~~~~~l~~~~~~~l~ 140 (516)
+..+-....+||.+.+++.-+++..++.+-.++
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 355667777899999999888888777654433
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.18 E-value=7.6e+02 Score=24.63 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 010173 495 CLFQTTVLVIRMLQTNW 511 (516)
Q Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (516)
.++.++..+++++|++|
T Consensus 299 ~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 299 MILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 33344556778888888
No 57
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=20.96 E-value=1.1e+03 Score=25.46 Aligned_cols=86 Identities=23% Similarity=0.148 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhh-hccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHH
Q 010173 413 YARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVA-VGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGL 491 (516)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~ 491 (516)
-|--++.....|..||+=--|.|+=+|..=...-.. .|.++. ..++...-+..+..+.+|.+...-.+.|.++.+
T Consensus 398 IAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rA----f~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl 473 (506)
T COG0342 398 IAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRA----FSTILDSNATTLIAAAILFALGTGPVKGFAVTL 473 (506)
T ss_pred hhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHH----HHHHHHhchHHHHHHHHHHHhccCCchHHHHHH
Confidence 355677888999999987777777666421111011 122222 233333324445555544433334588888888
Q ss_pred HHHHHHHHHHH
Q 010173 492 LLGCLFQTTVL 502 (516)
Q Consensus 492 ~~~~~~~~~~~ 502 (516)
.++-+...+..
T Consensus 474 ~lGi~~smfta 484 (506)
T COG0342 474 ILGILTSMFTA 484 (506)
T ss_pred HHHHHHHhhhh
Confidence 88877765543
Done!