Query 010173
Match_columns 516
No_of_seqs 265 out of 1907
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 21:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.2E-46 1.1E-50 392.0 35.5 431 40-510 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.6E-19 5.5E-24 188.7 21.0 209 40-249 231-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 63.1 1.1E+02 0.0039 29.6 36.5 24 481-504 409-432 (451)
4 4ev6_A Magnesium transport pro 42.3 1E+02 0.0035 29.5 9.4 50 459-511 281-338 (339)
5 4aps_A DI-OR tripeptide H+ sym 27.4 4.4E+02 0.015 25.7 28.3 30 474-503 440-469 (491)
6 2k1k_A Ephrin type-A receptor 20.3 1.2E+02 0.004 19.0 3.4 23 224-246 13-35 (38)
7 2iub_A CORA, divalent cation t 19.5 1.5E+02 0.0052 28.6 6.0 19 493-511 344-362 (363)
8 3o7q_A L-fucose-proton symport 19.3 5.8E+02 0.02 24.1 32.9 43 48-90 27-71 (438)
9 2fcg_F Cationic, antibacterial 15.5 84 0.0029 17.7 1.7 13 426-440 6-18 (26)
10 2ks1_B Epidermal growth factor 13.4 2.9E+02 0.0098 17.8 4.5 13 237-249 26-38 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.2e-46 Score=391.96 Aligned_cols=431 Identities=23% Similarity=0.384 Sum_probs=395.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (516)
Q Consensus 40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~ 119 (516)
...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999999999999999999998765 77889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173 120 FDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (516)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~ 199 (516)
+|+.++.++.++.+..+++++..++.++.+++..+++.+++..+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877667788899888888989899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-h---CcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cccCCHHHHHHHHHHHHH
Q 010173 200 MISMAALIFHVFLNWILVAK-L---NYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDA---WTGFSLRAFKSLASFVKL 272 (516)
Q Consensus 200 ~~~ii~~~l~i~l~~lli~~-~---~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~i~~~ 272 (516)
..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..+++++++...+ ++++...+++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6999999999999999999998888877532211 122222334778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010173 273 SLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSV 352 (516)
Q Consensus 273 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (516)
++|..++.+.+.+...+++.+++++| ++++++|++++++.++..++..+++++..|.+++++|+||++++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHH
Q 010173 353 ITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDL 432 (516)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (516)
+++..++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++.+..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------- 378 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG----------------------- 378 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhh----cC-CchhHHHHHHHHHHHHHHHHHHHHHh
Q 010173 433 RLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG----FK-LGINGIWSGLLLGCLFQTTVLVIRML 507 (516)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-~g~~g~~~~~~~~~~~~~~~~~~~~~ 507 (516)
++++.||++.+++.++.+.|++++|+++++.+. ++ +|+.|+|+++.+++++..++..++++
T Consensus 379 --------------~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 379 --------------SLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp --------------HHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred --------------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876 66 99999999999999999988877776
Q ss_pred hhc
Q 010173 508 QTN 510 (516)
Q Consensus 508 ~~~ 510 (516)
|+.
T Consensus 445 ~~~ 447 (460)
T 3mkt_A 445 WLQ 447 (460)
T ss_dssp SSC
T ss_pred HHH
Confidence 643
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=1.6e-19 Score=188.73 Aligned_cols=209 Identities=17% Similarity=0.096 Sum_probs=193.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (516)
Q Consensus 40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~ 119 (516)
+.+++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44566789999999999999999999999999999999999999999999999986 78999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 010173 120 FDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVM 198 (516)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~ 198 (516)
+|+.++..+.+..+...++++.+++ .++++++..++.+|++..+.+..++++.+++.++.++..+..+.+++.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999888877 889999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHH----hC-cchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010173 199 TMISMAAL-IFHVFLNWILVAK----LN-YGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (516)
Q Consensus 199 ~~~~ii~~-~l~i~l~~lli~~----~~-~Gv~Gaaia~~i~~~i~~~~~~~~~~~~ 249 (516)
++.++++. ++++++++++.+. ++ +|+.|+++++.+++.+..++..+.++|+
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 9999999999986 56 9999999999999999988876666554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=63.11 E-value=1.1e+02 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 010173 481 KLGINGIWSGLLLGCLFQTTVLVI 504 (516)
Q Consensus 481 ~~g~~g~~~~~~~~~~~~~~~~~~ 504 (516)
..|....+....+..++..++...
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 356666666555555555444433
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=42.27 E-value=1e+02 Score=29.51 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHHHHHHHhhc-CC------c-hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010173 459 LISIACYYVFGLPAGALLGYGF-KL------G-INGIWSGLLLGCLFQTTVLVIRMLQTNW 511 (516)
Q Consensus 459 ~~~~~~~~~~~~~~~~~l~~~~-~~------g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (516)
..++++ ++.+|..++-+.+. ++ + -.|-|+.. ...++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l-~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVM-ALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHH-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 444444 34566666665431 11 1 23444443 3445556677788888888
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=27.36 E-value=4.4e+02 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 010173 474 ALLGYGFKLGINGIWSGLLLGCLFQTTVLV 503 (516)
Q Consensus 474 ~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~ 503 (516)
.+.+...+.+....+.......++..++.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 440 QLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555555555444444444433
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.33 E-value=1.2e+02 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 010173 224 IVGAAIAGDISLWLMVVGLVVYV 246 (516)
Q Consensus 224 v~Gaaia~~i~~~i~~~~~~~~~ 246 (516)
+.|+.++.+.+-.+...+.++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHHe
Confidence 34555555555554444444433
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.52 E-value=1.5e+02 Score=28.65 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 010173 493 LGCLFQTTVLVIRMLQTNW 511 (516)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~ 511 (516)
+..++.+++.+++++|++|
T Consensus 344 ~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 344 AVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3344455667778888888
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=19.33 E-value=5.8e+02 Score=24.14 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHH
Q 010173 48 KIWEIAGPVILASGSEFSITFVTAAFVGHL--GEVEFAAVSVVQN 90 (516)
Q Consensus 48 ~il~~a~p~~l~~~~~~l~~~v~~~~i~~l--g~~~v~a~~ia~~ 90 (516)
.+.....-.+...+...........+...+ ++.+.+.......
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 71 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFY 71 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333344444444444445555555555555 4555554443333
No 9
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=15.53 E-value=84 Score=17.73 Aligned_cols=13 Identities=54% Similarity=0.986 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHhh
Q 010173 426 KNVVQDLRLKSYLRK 440 (516)
Q Consensus 426 ~~~~~~~~~~~~~~~ 440 (516)
|+++| |+|.+++|
T Consensus 6 kkIgQ--kIkdFf~~ 18 (26)
T 2fcg_F 6 KRIVQ--RIKDFLRN 18 (26)
T ss_dssp HHHHH--HHHHHHHH
T ss_pred HHHHH--HHHHHHHh
Confidence 55666 56667664
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.39 E-value=2.9e+02 Score=17.81 Aligned_cols=13 Identities=8% Similarity=0.475 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhC
Q 010173 237 LMVVGLVVYVTSG 249 (516)
Q Consensus 237 i~~~~~~~~~~~~ 249 (516)
+..+..+++++|+
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3334444555554
Done!