Query 010173
Match_columns 516
No_of_seqs 265 out of 1907
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 21:29:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 24.1 2.2E+02 0.016 24.8 37.8 28 481-508 406-433 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 21.8 2.4E+02 0.017 24.5 19.1 28 221-248 406-433 (447)
3 d1irqa_ a.43.1.4 (A:) Omega tr 15.6 34 0.0025 20.1 1.6 14 428-441 30-43 (48)
4 d2qalc1 d.52.3.1 (C:1-105) Rib 12.1 44 0.0032 24.3 1.8 25 423-447 27-51 (105)
5 d2uubc1 d.52.3.1 (C:2-106) Rib 8.8 71 0.0052 23.1 1.9 24 424-447 28-51 (105)
6 d2iuba2 f.17.3.1 (A:286-349) M 5.2 2.8E+02 0.02 17.3 3.3 12 467-478 14-25 (64)
7 d2izva1 a.271.1.1 (A:386-429) 4.8 1E+02 0.0076 18.4 0.7 8 433-440 29-36 (44)
8 d1an8a2 d.15.6.1 (A:96-208) St 4.7 1.3E+02 0.0098 21.9 1.4 16 431-446 38-53 (113)
9 d2c9wa1 a.271.1.1 (A:149-198) 4.6 1.2E+02 0.009 18.6 1.0 8 433-440 38-45 (50)
10 d1ty0a2 d.15.6.1 (A:104-211) S 4.4 1.5E+02 0.011 21.5 1.4 16 431-446 32-47 (108)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.11 E-value=2.2e+02 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010173 481 KLGINGIWSGLLLGCLFQTTVLVIRMLQ 508 (516)
Q Consensus 481 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (516)
..|..+.+.......++..++.+....+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677776666666556555555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=2.4e+02 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010173 221 NYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (516)
Q Consensus 221 ~~Gv~Gaaia~~i~~~i~~~~~~~~~~~ 248 (516)
+.|..+..+......++..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666655555555555554444433
No 3
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=15.64 E-value=34 Score=20.05 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhhh
Q 010173 428 VVQDLRLKSYLRKI 441 (516)
Q Consensus 428 ~~~~~~~~~~~~~~ 441 (516)
-|-|.||++|+++.
T Consensus 30 evm~~~l~~~~~~~ 43 (48)
T d1irqa_ 30 EVMDQALEEYIRKY 43 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 36788999999864
No 4
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.11 E-value=44 Score=24.33 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=20.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhh
Q 010173 423 SVQKNVVQDLRLKSYLRKIFNIAGV 447 (516)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (516)
...+.+.||..+..|+.|.+..+|+
T Consensus 27 ~Y~~~l~eD~~IR~~i~k~~~~a~I 51 (105)
T d2qalc1 27 EFADNLDSDFKVRQYLTKELAKASV 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457789999999999999988764
No 5
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.77 E-value=71 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhh
Q 010173 424 VQKNVVQDLRLKSYLRKIFNIAGV 447 (516)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~ 447 (516)
..+.+.+|.+++.|+.|.+-.+|+
T Consensus 28 y~~~l~eD~~IR~~i~k~~~~agI 51 (105)
T d2uubc1 28 YRHLLLEDQRIRGLLEKELYSAGL 51 (105)
T ss_dssp TTHHHHHHHHHHHHHHHSTTTTTE
T ss_pred hHHHHHHHHHHHHHHHhhccccCc
Confidence 346688999999999998877664
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.16 E-value=2.8e+02 Score=17.32 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=7.0
Q ss_pred HhhhHHHHHHHh
Q 010173 467 VFGLPAGALLGY 478 (516)
Q Consensus 467 ~~~~~~~~~l~~ 478 (516)
++.+|..++-+.
T Consensus 14 ~iflP~t~i~gi 25 (64)
T d2iuba2 14 TIFMPLTFIAGI 25 (64)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhh
Confidence 455676666543
No 7
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=1e+02 Score=18.37 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=5.2
Q ss_pred HHHHHHhh
Q 010173 433 RLKSYLRK 440 (516)
Q Consensus 433 ~~~~~~~~ 440 (516)
+||+||++
T Consensus 29 ~Lk~yLke 36 (44)
T d2izva1 29 SMKLYLKE 36 (44)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 56777763
No 8
>d1an8a2 d.15.6.1 (A:96-208) Streptococcal superantigen Spe-C {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.68 E-value=1.3e+02 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhhh
Q 010173 431 DLRLKSYLRKIFNIAG 446 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~ 446 (516)
|.|++.||.+.+|+-+
T Consensus 38 D~KiRk~L~~~~~LY~ 53 (113)
T d1an8a2 38 DFKIRKYLMDNYKIYD 53 (113)
T ss_dssp HHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhccccc
Confidence 7899999999998765
No 9
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=1.2e+02 Score=18.56 Aligned_cols=8 Identities=63% Similarity=1.074 Sum_probs=4.8
Q ss_pred HHHHHHhh
Q 010173 433 RLKSYLRK 440 (516)
Q Consensus 433 ~~~~~~~~ 440 (516)
+||+||++
T Consensus 38 ~Lk~YL~e 45 (50)
T d2c9wa1 38 RLKDYLEE 45 (50)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 56666663
No 10
>d1ty0a2 d.15.6.1 (A:104-211) Streptococcal pyrogenic exotoxin Spe-J {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.39 E-value=1.5e+02 Score=21.47 Aligned_cols=16 Identities=25% Similarity=0.706 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhhhhh
Q 010173 431 DLRLKSYLRKIFNIAG 446 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~ 446 (516)
|++++.||++.+|+-+
T Consensus 32 D~K~Rk~L~~~y~LY~ 47 (108)
T d1ty0a2 32 DFKIRQYLMQTYKIYD 47 (108)
T ss_dssp HHHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHHhhCccc
Confidence 7788999999999865
Done!