Query 010175
Match_columns 516
No_of_seqs 55 out of 57
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 21:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05708 DUF830: Orthopoxvirus 99.4 1.8E-12 4E-17 114.6 9.2 103 211-329 1-103 (158)
2 PRK11479 hypothetical protein; 99.2 1.4E-10 3E-15 116.0 10.8 180 205-455 58-240 (274)
3 PRK10030 hypothetical protein; 99.1 1.2E-09 2.6E-14 103.8 11.9 99 210-325 19-117 (197)
4 PRK11470 hypothetical protein; 98.8 9E-08 2E-12 92.3 12.2 102 209-325 6-107 (200)
5 COG3863 Uncharacterized distan 90.3 0.89 1.9E-05 45.3 7.1 95 205-325 72-172 (231)
6 PF05257 CHAP: CHAP domain; I 84.5 2.6 5.6E-05 36.6 5.8 43 208-264 59-102 (124)
7 PF05382 Amidase_5: Bacterioph 84.5 2.4 5.3E-05 39.8 5.9 53 210-282 74-126 (145)
8 TIGR02219 phage_NlpC_fam putat 84.2 1.2 2.6E-05 40.2 3.7 54 206-282 71-124 (134)
9 PF07313 DUF1460: Protein of u 81.1 3.8 8.1E-05 40.7 6.1 58 209-282 151-208 (216)
10 PF00877 NLPC_P60: NlpC/P60 fa 62.5 5.7 0.00012 33.4 2.2 37 206-262 46-82 (105)
11 PRK10838 spr outer membrane li 55.0 24 0.00052 34.5 5.2 52 206-282 123-175 (190)
12 PF01436 NHL: NHL repeat; Int 50.7 26 0.00057 23.9 3.5 18 246-264 6-23 (28)
13 COG5008 PilU Tfp pilus assembl 42.1 15 0.00032 39.0 1.7 109 134-250 110-232 (375)
14 PRK13914 invasion associated s 40.7 46 0.00099 37.1 5.2 38 206-263 421-458 (481)
15 PF14133 DUF4300: Domain of un 38.2 26 0.00056 35.9 2.7 36 241-281 185-220 (250)
16 PRK15231 fimbrial adhesin prot 33.4 39 0.00085 32.5 2.9 101 146-275 10-117 (150)
17 TIGR02594 conserved hypothetic 33.4 83 0.0018 28.8 4.9 27 409-436 30-56 (129)
18 PF04970 LRAT: Lecithin retino 32.7 2.6E+02 0.0055 24.6 7.7 92 209-326 4-106 (125)
19 PF05382 Amidase_5: Bacterioph 31.9 33 0.00071 32.4 2.2 30 413-444 24-54 (145)
20 PF07646 Kelch_2: Kelch motif; 30.3 53 0.0011 24.3 2.6 16 241-259 2-17 (49)
21 TIGR01293 Kv_beta voltage-depe 28.9 85 0.0019 31.6 4.7 63 361-450 95-157 (317)
22 COG0791 Spr Cell wall-associat 27.7 1.4E+02 0.0029 28.0 5.5 44 192-250 115-163 (197)
23 smart00739 KOW KOW (Kyprides, 26.6 1.1E+02 0.0024 19.8 3.4 23 212-250 2-24 (28)
24 PF07576 BRAP2: BRCA1-associat 24.3 51 0.0011 29.7 1.9 20 305-324 60-80 (110)
25 PF04583 Baculo_p74: Baculovir 24.3 80 0.0017 32.6 3.5 9 321-329 125-133 (249)
26 PF07494 Reg_prop: Two compone 24.0 70 0.0015 21.3 2.1 12 248-259 10-21 (24)
27 TIGR02594 conserved hypothetic 23.9 1.7E+02 0.0037 26.8 5.2 38 211-265 73-112 (129)
28 TIGR03228 anthran_1_2_A anthra 21.7 1.8E+02 0.004 31.8 5.8 115 203-348 39-162 (438)
29 KOG4456 Inner centromere prote 21.6 91 0.002 29.6 3.0 70 320-396 41-119 (134)
30 PF00877 NLPC_P60: NlpC/P60 fa 21.4 61 0.0013 27.3 1.7 20 416-435 13-32 (105)
31 PF13418 Kelch_4: Galactose ox 20.1 1E+02 0.0022 22.4 2.5 18 240-259 1-18 (49)
No 1
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=99.38 E-value=1.8e-12 Score=114.55 Aligned_cols=103 Identities=21% Similarity=0.364 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhhccCCC
Q 010175 211 DVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDDSN 290 (516)
Q Consensus 211 dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~kd~a~ 290 (516)
.+|+||+|... |. +.++..++-+|++..||++|++.+.+++.+|+|+... ++|++.++++|.. .+
T Consensus 1 ~l~~GDIil~~---~~-~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~~-----~Gv~~~~l~~~~~------~~ 65 (158)
T PF05708_consen 1 KLQTGDIILTR---GK-SSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATPG-----DGVRLEPLSDFLK------RN 65 (158)
T ss_dssp ---TT-EEEEE---E--SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEETT-----TCEEEEECHHHHH------CC
T ss_pred CCCCeeEEEEE---CC-chHHHHHHHHhCCCCCEEEEEEecCCCceEEEEeccC-----CCeEEeeHHHHhc------CC
Confidence 36899999998 66 8899999999999999999999987788999999321 2799999999975 15
Q ss_pred CceEEecCChHHHhhcchhHHHHHHHHhcCCCcccccee
Q 010175 291 PQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMI 329 (516)
Q Consensus 291 ~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGyhN~i 329 (516)
-+++++.+.+. +..=...+|.+|++++-|+||++...+
T Consensus 66 ~~~~V~r~~~~-~~~~~~~~~~~~a~~~~g~~Y~~~~~~ 103 (158)
T PF05708_consen 66 EKIAVYRLKDP-LSEEQRQKAAEFAKSYIGKPYDFNFSL 103 (158)
T ss_dssp CEEEEEEECCG-TTCHHHHHHHHHHHCCTTS-B-CC-HC
T ss_pred ceEEEEEECCC-CCHHHHHHHHHHHHHHcCCCccccccC
Confidence 67999988887 222245568889999999999965433
No 2
>PRK11479 hypothetical protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=116.00 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=117.3
Q ss_pred ccCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhh
Q 010175 205 ATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELA 284 (516)
Q Consensus 205 ~~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~ 284 (516)
..|+.+++|+||+|.++ |. +.++..|++.|+|...|++|.+-| | .++|+.. .+|++++.++|..
T Consensus 58 ~~Vs~~~LqpGDLVFfs---t~-t~~S~~Ik~~T~s~~SHVgIylGd--g--~vIEA~g------~GVri~pL~~~~~-- 121 (274)
T PRK11479 58 KEITAPDLKPGDLLFSS---SL-GVTSFGIRVFSTSSVSHVAIYLGE--N--NVAEATG------AGVQIVSLKKAIK-- 121 (274)
T ss_pred cccChhhCCCCCEEEEe---cC-CccccceecccCCCCcEEEEEecC--C--eEEEcCC------CCEEEEechhhhc--
Confidence 36888999999999998 44 678999999999999999999863 4 3799832 3699999999975
Q ss_pred hccCCCCceEEe---cCChHHHhhcchhHHHHHHHHhcCCCccccceeeeeeecCcCCCCCCcchhHHHHHhhhhhhcch
Q 010175 285 LKDDSNPQIALL---PLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHLVVSVMSMWTRVQP 361 (516)
Q Consensus 285 ~kd~a~~~va~L---PL~~e~RakFN~tAA~ef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~v~~v~s~~~~~~P 361 (516)
.+-.|..+ .|.+|.+++ +.+|+.+..|+||.|.+.+ .+...+
T Consensus 122 ----~~~~I~a~Rv~~lt~e~~~k-----l~~fa~~~lGy~YN~~gI~-----------------~i~~y~--------- 166 (274)
T PRK11479 122 ----HSDKLFALRVPDLTPQQATK-----ITAFANKIKDSGYNYRGIV-----------------EFIPFM--------- 166 (274)
T ss_pred ----ccceEEEEeCCCCCHHHHHH-----HHHHHHHhcCCCCCHHHHH-----------------HHHHhh---------
Confidence 23357777 556565554 8899999999999988776 111111
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhhHHHHHHcCCChhhhcCcccCCcccccCCCcchHHHHHHHHHHhcCccCCCcCcee
Q 010175 362 AYAANMWNEALNKRLGTEDLDLHGILDEIEKRGISFDQLLTIPEQDEWVYSDGKSTTCVAFILEMYKEAGVFGPISNSIQ 441 (516)
Q Consensus 362 ~~a~~mwneALNKRLgT~gLdl~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~~~~sIn 441 (516)
+|||+ ..++.|=.....+=++.=-+.++..-- -.|..+++||.||+++|+++|+-- . .-+
T Consensus 167 ----------~~~~~----~~~p~~~~~~r~~~~~~la~i~lg~~~---~~~~~~~fCSqfVaeaf~~aG~pi--~-~~~ 226 (274)
T PRK11479 167 ----------VTRQM----CSLNPFSEDFRQQCVSGLAKAQLGSVG---EGDKKSWFCSEFVTEAFAKAGHPL--T-LAQ 226 (274)
T ss_pred ----------hhhhh----ccCCCCcHHHHHHHHHhhhhhhhcccc---cCCCCcEEHHHHHHHHHHHcCCcc--c-cCC
Confidence 11211 011111111111100000000000000 046789999999999999999843 2 345
Q ss_pred ecccccccceeeec
Q 010175 442 VTEFTIRDAYMLKI 455 (516)
Q Consensus 442 ~tEFTp~D~Y~l~i 455 (516)
..-.||.|+..++=
T Consensus 227 ~~~v~P~Dl~~ir~ 240 (274)
T PRK11479 227 SGWISPADLLHMRE 240 (274)
T ss_pred cCccCHHHHHhccc
Confidence 56669999988764
No 3
>PRK10030 hypothetical protein; Provisional
Probab=99.07 E-value=1.2e-09 Score=103.84 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhhccCC
Q 010175 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDDS 289 (516)
Q Consensus 210 ~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~kd~a 289 (516)
.++|+||+|-.+ |+ +..+..|+.+|+|.-.|++|..+. +|+.+|+||. .+|+.+|+++|.+ +..
T Consensus 19 ~~l~~GDlif~~---g~-~~~s~aI~~~T~s~~SHVGIi~~~-~~~~~ViEAv-------~~V~~~pL~~Fl~----~~~ 82 (197)
T PRK10030 19 WQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMIVKR-NKKPYVFEAV-------GPVKYTPLKQWIA----HGE 82 (197)
T ss_pred cCCCCCCEEEEe---CC-CcHhHHHhHhhCCCCceEEEEEEE-CCcEEEEEec-------CceEEEEHHHHhh----cCc
Confidence 388999999998 66 678999999999999999999985 7899999994 2499999999975 344
Q ss_pred CCceEEecCChHHHhhcchhHHHHHHHHhcCCCccc
Q 010175 290 NPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGY 325 (516)
Q Consensus 290 ~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGy 325 (516)
+.++++..++..+... ...++.+|+.++-|+||++
T Consensus 83 ~~~~~V~Rl~~~lt~~-~~~~li~~A~~~lGkpYD~ 117 (197)
T PRK10030 83 KGKYVVRRLENGLSVE-QQQKLAQTAKRYLGKPYDF 117 (197)
T ss_pred cCcEEEEEeCCCCCHH-HHHHHHHHHHHHcCCCCCc
Confidence 6789988877643322 1445788999999999983
No 4
>PRK11470 hypothetical protein; Provisional
Probab=98.75 E-value=9e-08 Score=92.34 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhhccC
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~kd~ 288 (516)
+.++|+||+|-++- |. .. ..-|+.+|||-..|++|+.+-..++.+|+||.. .+++++|+++|++ ..
T Consensus 6 ~~~l~~GDLvF~~~--~~-~~-~~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~------~~vr~TpLs~fi~----r~ 71 (200)
T PRK11470 6 PAEYEIGDIVFTCI--GA-AL-FGQISAASNCWSNHVGIIIGHNGEDFLVAESRV------PLSTVTTLSRFIK----RS 71 (200)
T ss_pred cCCCCCCCEEEEeC--Cc-ch-hHHHHhccCCccceEEEEEEEcCCceEEEEecC------CceEEeEHHHHHh----cC
Confidence 46899999998873 22 33 355888999999999999954356889999953 2389999999985 46
Q ss_pred CCCceEEecCChHHHhhcchhHHHHHHHHhcCCCccc
Q 010175 289 SNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGY 325 (516)
Q Consensus 289 a~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGy 325 (516)
.+..+++-.|+..+++. =..+|.+++.++-|+||+.
T Consensus 72 ~~g~i~v~Rl~~~l~~~-~~~~~~~~A~~~lGkpYD~ 107 (200)
T PRK11470 72 ANQRYAIKRLDAGLTEQ-QKQRIVEQVPSRLRKLYHT 107 (200)
T ss_pred cCceEEEEEecCCCCHH-HHHHHHHHHHHHcCCCCCC
Confidence 67899999997655542 1355899999999999994
No 5
>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]
Probab=90.35 E-value=0.89 Score=45.32 Aligned_cols=95 Identities=22% Similarity=0.367 Sum_probs=58.9
Q ss_pred ccCCCCCCCCCCEEEEeeecccCCchhhHHHhhh------CcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchh
Q 010175 205 ATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVT------GAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWD 278 (516)
Q Consensus 205 ~~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~t------Gs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~ 278 (516)
.+.++.-.||||.|.= ++--| +|- -|.| +.|-||.+|.. + .|+ ++||..+ ||++.+..
T Consensus 72 ~~~dr~v~~~gd~~~g-dyPTr-~g~----i~~t~~~~~~~~H~gHagmy~-~-a~~--~VEs~ps------GVr~v~~n 135 (231)
T COG3863 72 NNLDRSVLQPGDILLG-DYPTR-GGA----IWLTDTFGNIVGHWGHAGMYI-G-AGQ--MVESWPS------GVRVVSVN 135 (231)
T ss_pred hhhhhhhcCCcchhhc-cCCCC-cce----EEEEcccccccccccceEEEE-c-CCc--EEeeccC------ceEEecch
Confidence 4677778889987753 33223 221 2433 44668888655 2 344 5788764 47777777
Q ss_pred HHHHhhhccCCCCceEEecCChHHHhhcchhHHHHHHHHhcCCCccc
Q 010175 279 EWWELALKDDSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGY 325 (516)
Q Consensus 279 eW~~~~~kd~a~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGy 325 (516)
-|.. +|+ +++-..+-..-+ .++|-+|+.+..|+||.|
T Consensus 136 ~~~~---~dn----~iV~~vsts~~q---k~~AadWa~~kVG~PY~~ 172 (231)
T COG3863 136 MARN---ADN----VIVYRVSTSNDQ---KSKAADWALTKVGLPYDY 172 (231)
T ss_pred hhhc---ccc----eEEEEEecchhh---hHHHHHHHHhccCCcccc
Confidence 7742 333 444443333222 378999999999999997
No 6
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=84.55 E-value=2.6 Score=36.61 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEc-CCCcEEEEecCCC
Q 010175 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKD-KEGNLWVGESGHE 264 (516)
Q Consensus 208 ~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd-~dG~L~v~ES~~~ 264 (516)
.....++||++.+. ..++...||+||+... .+|.+.++|....
T Consensus 59 ~~~~P~~Gdivv~~--------------~~~~~~~GHVaIV~~v~~~~~i~v~e~N~~ 102 (124)
T PF05257_consen 59 TGSTPQPGDIVVWD--------------SGSGGGYGHVAIVESVNDGGTITVIEQNWG 102 (124)
T ss_dssp ECS---TTEEEEEE--------------ECTTTTT-EEEEEEEE-TTSEEEEEECSST
T ss_pred cCcccccceEEEec--------------cCCCCCCCeEEEEEEECCCCEEEEEECCcC
Confidence 45677899999885 3467789999999997 6799999999864
No 7
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=84.45 E-value=2.4 Score=39.78 Aligned_cols=53 Identities=19% Similarity=0.425 Sum_probs=37.9
Q ss_pred CCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHH
Q 010175 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (516)
Q Consensus 210 ~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 282 (516)
.++|.||++..++- |. ++...|||+|+|.. +. +|.-. | +..+|.++..+..|.
T Consensus 74 ~~~q~GDI~I~g~~-g~-----------S~G~~GHtgif~~~--~~--iIhc~---y-~~~g~~~~~~~~~~~ 126 (145)
T PF05382_consen 74 WNLQRGDIFIWGRR-GN-----------SAGAGGHTGIFMDN--DT--IIHCN---Y-GANGIAINNYDWYWY 126 (145)
T ss_pred ccccCCCEEEEcCC-CC-----------CCCCCCeEEEEeCC--Cc--EEEec---C-CCCCeEecCCCeeee
Confidence 37899999997733 32 55678999999842 22 33332 3 888999999888875
No 8
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=84.18 E-value=1.2 Score=40.17 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 282 (516)
.++.+++|+||+|.+. . ..|..++|++|.+ . +|++ |-+.. + .+|.+...+.||.
T Consensus 71 ~v~~~~~qpGDlvff~-~-------------~~~~~~~HvGIy~-G-~g~~--iHa~~----~-~~v~~~~~~~yw~ 124 (134)
T TIGR02219 71 PVPCDAAQPGDVLVFR-W-------------RPGAAAKHAAIAA-S-PTRF--IHAYD----G-AAVVESALVPWWR 124 (134)
T ss_pred ccchhcCCCCCEEEEe-e-------------CCCCCCcEEEEEe-C-CCcE--EEECC----C-CCEEEeCCcHHHH
Confidence 4567889999999875 2 2355689999888 2 5664 44322 1 1345566677775
No 9
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=81.10 E-value=3.8 Score=40.75 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=42.8
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHH
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWE 282 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 282 (516)
.+.||+||+|+|..= . .|=-+.|+.++.|..+| ++...+.. -.++..|.-.|+.||..
T Consensus 151 ~~~i~~GDiI~i~t~--~-----------~GLDvsH~Giav~~~~~-l~l~hASs--~~~~~~vvd~pl~~Yl~ 208 (216)
T PF07313_consen 151 LSQIKNGDIIAIVTN--I-----------KGLDVSHVGIAVWKNDG-LHLRHASS--LHKKVVVVDEPLSEYLK 208 (216)
T ss_dssp HTTS-TT-EEEEEEE--C-----------TTECEEEEEEEEEETTE-EEEEEEET--TTTEEEEECCEHHHHHH
T ss_pred HhcCCCCCEEEEEeC--C-----------CCCceeeEEEEEEECCe-EEEEeCCC--CCCCcEEeccCHHHHHh
Confidence 488999999999832 1 55668999999997555 99887665 44555688899999975
No 10
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=62.50 E-value=5.7 Score=33.44 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=27.0
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecC
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~ 262 (516)
.++.++.++||+|.+.. +..+.|++|.|= +| .+++++
T Consensus 46 ~~~~~~~~pGDlif~~~----------------~~~~~Hvgiy~g--~~--~~iha~ 82 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKG----------------GGGISHVGIYLG--DG--KFIHAS 82 (105)
T ss_dssp HEEGGG-TTTEEEEEEG----------------TGGEEEEEEEEE--TT--EEEEEE
T ss_pred ccchhcCCcccEEEEeC----------------CccCCEeEEEEe--CC--eEEEeC
Confidence 36788999999999981 778999999982 34 345555
No 11
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=54.98 E-value=24 Score=34.51 Aligned_cols=52 Identities=10% Similarity=0.410 Sum_probs=32.3
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchh-HHHH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWD-EWWE 282 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~-eW~~ 282 (516)
.|+.+++++||.|.+. +|+..+|++|.+= +|+ +|.+... .+|.+..++ .||.
T Consensus 123 ~V~~~~lqpGDLVfF~----------------~~~~~~HVGIyiG--ng~--~IHAs~~-----~gV~i~~l~~~yw~ 175 (190)
T PRK10838 123 SVSRSKLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYWK 175 (190)
T ss_pred CcccCCCCCCcEEEEC----------------CCCCCCEEEEEec--CCE--EEEeCCC-----CCEEEEeCCchHhH
Confidence 3567899999998775 2334689999884 455 3444331 235555554 5553
No 12
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.73 E-value=26 Score=23.89 Aligned_cols=18 Identities=39% Similarity=0.888 Sum_probs=14.0
Q ss_pred EEEEEcCCCcEEEEecCCC
Q 010175 246 AVCLKDKEGNLWVGESGHE 264 (516)
Q Consensus 246 av~Lrd~dG~L~v~ES~~~ 264 (516)
.|++ +++|++||.|+...
T Consensus 6 gvav-~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 6 GVAV-DSDGNIYVADSGNH 23 (28)
T ss_dssp EEEE-ETTSEEEEEECCCT
T ss_pred EEEE-eCCCCEEEEECCCC
Confidence 4566 47999999998763
No 13
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.07 E-value=15 Score=39.04 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=74.8
Q ss_pred EeecCChhhHH--HHHhcceEEEEec--cchhhhhhhhhhccccccC-Cch----hhhccHHHHHHhcCCceeeccCC--
Q 010175 134 FDSWEEPAELE--YVKQHGVSVFLMP--SGMMGTLLSLIDILPLFSN-SHW----GQNANLAFLEKHMGATFEKRPQP-- 202 (516)
Q Consensus 134 ~~~~~~~~e~e--~ik~~Gv~vFlm~--~G~~gtl~sl~d~~plF~n-~~w----g~~~Nl~FL~~~mg~~fe~R~~~-- 202 (516)
|.+++=++-++ .+++.|+-||.=. +|=--|+-+..+- .| +-- -...=++|+.+|-+--+..|+.-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~y----RN~~s~gHIiTIEDPIEfih~h~~CIvTQREvGvD 185 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGY----RNKNSTGHIITIEDPIEFIHKHKRCIVTQREVGVD 185 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcc----cccCCCCceEEecChHHHHhcccceeEEeeeeccc
Confidence 34444333333 5678999888654 3334444333332 22 111 23556899999999999999743
Q ss_pred ---ccccCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEE
Q 010175 203 ---WHATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLK 250 (516)
Q Consensus 203 ---~~~~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lr 250 (516)
|.+.+.-..=|+-|+|.|+.+|-| |+++-=.+=|-.||-.||-.
T Consensus 186 Tesw~~AlkNtlRQapDvI~IGEvRsr----etMeyAi~fAeTGHLcmaTL 232 (375)
T COG5008 186 TESWEVALKNTLRQAPDVILIGEVRSR----ETMEYAIQFAETGHLCMATL 232 (375)
T ss_pred hHHHHHHHHHHHhcCCCeEEEeecccH----hHHHHHHHHHhcCceEEEEe
Confidence 444455567799999999999999 99998888899999887765
No 14
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=40.71 E-value=46 Score=37.09 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=27.4
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCC
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGH 263 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~ 263 (516)
.++.+++++||+|.+. +|+..+|.+|.|- +|+ +|.+.+
T Consensus 421 ~Vs~selqpGDLVFF~----------------~~~~~~HVGIYiG--nG~--~IHA~~ 458 (481)
T PRK13914 421 RISESQAKPGDLVFFD----------------YGSGISHVGIYVG--NGQ--MINAQD 458 (481)
T ss_pred ccccccCCCCCEEEeC----------------CCCCCCEEEEEeC--CCE--EEEcCC
Confidence 4677899999999885 1345789999983 566 345543
No 15
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=38.17 E-value=26 Score=35.86 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=24.7
Q ss_pred CcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHH
Q 010175 241 FAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWW 281 (516)
Q Consensus 241 ~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~ 281 (516)
++||++|.+.+.|| ++.+|=.. .++--|.+++..|-
T Consensus 185 FvGH~GVLv~~~dg-~LFiEKla----f~ePYQa~kF~~~~ 220 (250)
T PF14133_consen 185 FVGHTGVLVPTKDG-YLFIEKLA----FEEPYQATKFNNKE 220 (250)
T ss_pred EeeeEEEEEEcCCc-EEEEEeeC----CCCCceeEEeCCHH
Confidence 46899999988667 88888654 34445555555553
No 16
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=33.45 E-value=39 Score=32.51 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=66.8
Q ss_pred HHhcceEEEEeccchhhhhhhhhhccccccCCchhhhccHHHHHHhcCCceeeccCCccccCCCCCCCCCCEEEEeeecc
Q 010175 146 VKQHGVSVFLMPSGMMGTLLSLIDILPLFSNSHWGQNANLAFLEKHMGATFEKRPQPWHATINPEDVHSGDFLAVSKIRG 225 (516)
Q Consensus 146 ik~~Gv~vFlm~~G~~gtl~sl~d~~plF~n~~wg~~~Nl~FL~~~mg~~fe~R~~~~~~~i~~~dI~sGDflai~kirG 225 (516)
|-+.=++||++-.|...++...-++ .|-++ +.|| .=-+.+++|..||-+||--
T Consensus 10 ~~~~~~~~~~~~~~~~Ss~sqA~el-~L~~~-------------~~~~-------------~~~~~l~dg~~laTGri~c 62 (150)
T PRK15231 10 IPKFIVSVFLIVTGFFSSTIKAQEL-KLMIK-------------INEA-------------VFYDRITSNKIIGTGHLFN 62 (150)
T ss_pred cccceeeEeeEeehhhhhhhhceee-EEEee-------------cccc-------------chhhhccCCcEEeeeeEEe
Confidence 4455689999988887777444333 11110 1111 0125789999999999988
Q ss_pred cCCchhhHHHhhh----CcCcceeEEE-EEcCCCcEEEEecCCCCcc--cccceEec
Q 010175 226 RWGGFETLEKWVT----GAFAGHTAVC-LKDKEGNLWVGESGHENEK--GEEIIVVI 275 (516)
Q Consensus 226 r~~Gf~~l~kw~t----Gs~~GHtav~-Lrd~dG~L~v~ES~~~~~~--g~~~I~~~ 275 (516)
| +||- +.||.. |..+||-.|- .+|+.-||+|-=.|.+|-. +.+||.+.
T Consensus 63 r-egfh-iwmns~~~q~gg~P~~YIvqGk~dsqh~LrVRlgGeGWqPd~~g~Giv~~ 117 (150)
T PRK15231 63 R-EGKK-ILISSSLEKIKNTPGAYIIRGQNNSAHKLRIRIGGEDWQPDNSGIGMVSH 117 (150)
T ss_pred c-CCeE-EEEecchhhcCCCccEEEEECCCCCcceEEEEecCCCccCCCCCCceEee
Confidence 8 7998 888877 7788888766 4577789998766665532 33444443
No 17
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=33.36 E-value=83 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=20.8
Q ss_pred ccccCCCcchHHHHHHHHHHhcCccCCC
Q 010175 409 WVYSDGKSTTCVAFILEMYKEAGVFGPI 436 (516)
Q Consensus 409 W~Y~DG~S~~CsafV~~myKaAGlFg~~ 436 (516)
|-..|.-.+ ||+||--+|+++|+-.+-
T Consensus 30 ~~~~~~~~W-Cs~FV~~~~~qaG~~~~r 56 (129)
T TIGR02594 30 VRTDDETPW-CGSFVNMCLEKTGRKGTG 56 (129)
T ss_pred ccCCCCCcH-HHHHHHHHHHHcCCCCCC
Confidence 333455555 999999999999997654
No 18
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=32.68 E-value=2.6e+02 Score=24.60 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEE-EEecCC----------CCcccccceEecch
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLW-VGESGH----------ENEKGEEIIVVIPW 277 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~-v~ES~~----------~~~~g~~~I~~~~w 277 (516)
...+++||.|.+-|. ..-|.++.+= ||+.. ...++. .....+..|++.++
T Consensus 4 ~~~~~~GD~I~~~r~-----------------~y~H~gIYvG--~~~ViH~~~~~~~~~~~~~~~~~~~~~~~~V~~~~l 64 (125)
T PF04970_consen 4 KKRLKPGDHIEVPRG-----------------LYEHWGIYVG--DGEVIHFSGPGEISVSNRSSICGFSKKKAEVKKDSL 64 (125)
T ss_dssp --S--TT-EEEEEET-----------------TEEEEEEEEE--TTEEEEEE-S-SSS-SSSSGGGGT--S-EEEEEEEH
T ss_pred ccCCCCCCEEEEecC-----------------CccEEEEEec--CCeEEEecccccccccccccccceecCCCEEEEEEh
Confidence 456899999999932 5679998885 46544 221111 11235677899999
Q ss_pred hHHHHhhhccCCCCceEEecCChHHHhhcchhHHHHHHHHhcCCCcccc
Q 010175 278 DEWWELALKDDSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYH 326 (516)
Q Consensus 278 ~eW~~~~~kd~a~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGyh 326 (516)
+++.. .. .+-+....+.....+....+.+-|+++-|+...|+
T Consensus 65 ~~~~~-----~~--~~~v~~~~~~~~~~~~~~~iv~rA~~~lg~~~~Y~ 106 (125)
T PF04970_consen 65 EEFAQ-----GR--KVRVNNYLDHRYKPFPPEEIVERAESRLGKEFEYN 106 (125)
T ss_dssp HHHHT-----TS--EEEE--GGGGTS--S-HHHHHHHHHHTTT-EESS-
T ss_pred HHhcC-----CC--EEEEEecCCccCCCCCHHHHHHHHHHHHcCCCccC
Confidence 99953 22 24444443344455677778888999988644655
No 19
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=31.94 E-value=33 Score=32.43 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCc-chHHHHHHHHHHhcCccCCCcCceeecc
Q 010175 413 DGKS-TTCVAFILEMYKEAGVFGPISNSIQVTE 444 (516)
Q Consensus 413 DG~S-~~CsafV~~myKaAGlFg~~~~sIn~tE 444 (516)
.|++ +-||.||..++|+||+.- ..++--||
T Consensus 24 ~G~~s~DCSs~V~~ALr~aG~~~--~g~~~nT~ 54 (145)
T PF05382_consen 24 NGPDSYDCSSFVYQALRAAGFKI--PGSAGNTE 54 (145)
T ss_pred CCCCcCchHHHHHHHHHHcCCCC--CCCccCHH
Confidence 4444 799999999999999963 23344444
No 20
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=30.25 E-value=53 Score=24.28 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.2
Q ss_pred CcceeEEEEEcCCCcEEEE
Q 010175 241 FAGHTAVCLKDKEGNLWVG 259 (516)
Q Consensus 241 ~~GHtav~Lrd~dG~L~v~ 259 (516)
+.||+++++ ++|+||+
T Consensus 2 r~~hs~~~~---~~kiyv~ 17 (49)
T PF07646_consen 2 RYGHSAVVL---DGKIYVF 17 (49)
T ss_pred ccceEEEEE---CCEEEEE
Confidence 579999876 7899976
No 21
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=28.95 E-value=85 Score=31.61 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhhHHHHHHcCCChhhhcCcccCCcccccCCCcchHHHHHHHHHHhcCccCCCcCce
Q 010175 361 PAYAANMWNEALNKRLGTEDLDLHGILDEIEKRGISFDQLLTIPEQDEWVYSDGKSTTCVAFILEMYKEAGVFGPISNSI 440 (516)
Q Consensus 361 P~~a~~mwneALNKRLgT~gLdl~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~~~~sI 440 (516)
|+....-+.+.| |||||.-+|+..+= .... ..|-.+. .=.++-+|++|++. .|
T Consensus 95 ~~~i~~~~~~SL-~rL~td~iDl~~lH------~~~~----~~~~~e~------------~~aL~~l~~~G~ir----~i 147 (317)
T TIGR01293 95 RKHIIEGLKASL-ERLQLEYVDIVFAN------RPDP----NTPMEET------------VRAMTYVINQGMAM----YW 147 (317)
T ss_pred HHHHHHHHHHHH-HHhCCCcEeEEEec------cCCC----CCCHHHH------------HHHHHHHHHcCCee----EE
Confidence 344444444444 79999999987654 1110 0010000 11455677888888 56
Q ss_pred eecccccccc
Q 010175 441 QVTEFTIRDA 450 (516)
Q Consensus 441 n~tEFTp~D~ 450 (516)
-++.|++.++
T Consensus 148 GvSn~~~~~l 157 (317)
T TIGR01293 148 GTSRWSSMEI 157 (317)
T ss_pred EecCCCHHHH
Confidence 6777776664
No 22
>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
Probab=27.72 E-value=1.4e+02 Score=28.03 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=30.5
Q ss_pred cCCceeeccCC-----ccccCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEE
Q 010175 192 MGATFEKRPQP-----WHATINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLK 250 (516)
Q Consensus 192 mg~~fe~R~~~-----~~~~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lr 250 (516)
+|..+ +|..+ .-..+..+++++||+|-+. .+ .++.+.|.++-+-
T Consensus 115 ~gi~l-pr~~~~~q~~~g~~v~~~~~~~GDlvff~------~~--------~~~~~~Hvgiy~g 163 (197)
T COG0791 115 VGIQL-PRTTRADQWNVGTAVDDSDLQPGDLVFFN------TG--------GGSSANHVGIYLG 163 (197)
T ss_pred cCccC-CCCccHHHHhccCccChhhCCCCCEEEEe------cC--------CCCCCCeEEEEec
Confidence 66666 55541 1146677889999999988 22 4667889998875
No 23
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=26.61 E-value=1.1e+02 Score=19.81 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.3
Q ss_pred CCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEE
Q 010175 212 VHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLK 250 (516)
Q Consensus 212 I~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lr 250 (516)
+++||.+.|. .|.+.|+.+..+.
T Consensus 2 ~~~G~~V~I~----------------~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVI----------------AGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEe----------------ECCCCCcEEEEEE
Confidence 5688888887 5777888886664
No 24
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=24.35 E-value=51 Score=29.70 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=17.0
Q ss_pred hc-chhHHHHHHHHhcCCCcc
Q 010175 305 KF-NSTAAWEYARSMSGKPYG 324 (516)
Q Consensus 305 kF-N~tAA~ef~~~~eG~PYG 324 (516)
|| +..+|-+|....+||||-
T Consensus 60 kF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 60 KFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EECCHHHHHHHHHHhCCCccC
Confidence 45 677888999999999984
No 25
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=24.25 E-value=80 Score=32.62 Aligned_cols=9 Identities=56% Similarity=1.401 Sum_probs=8.3
Q ss_pred CCcccccee
Q 010175 321 KPYGYHNMI 329 (516)
Q Consensus 321 ~PYGyhN~i 329 (516)
-||||.||+
T Consensus 125 DPfGYnNMF 133 (249)
T PF04583_consen 125 DPFGYNNMF 133 (249)
T ss_pred CcccccccC
Confidence 599999998
No 26
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.99 E-value=70 Score=21.28 Aligned_cols=12 Identities=50% Similarity=1.273 Sum_probs=8.7
Q ss_pred EEEcCCCcEEEE
Q 010175 248 CLKDKEGNLWVG 259 (516)
Q Consensus 248 ~Lrd~dG~L~v~ 259 (516)
.+.|.+|.|||+
T Consensus 10 i~~D~~G~lWig 21 (24)
T PF07494_consen 10 IYEDSDGNLWIG 21 (24)
T ss_dssp EEE-TTSCEEEE
T ss_pred EEEcCCcCEEEE
Confidence 445888999997
No 27
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=23.94 E-value=1.7e+02 Score=26.78 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=28.3
Q ss_pred CCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcC-C-CcEEEEecCCCC
Q 010175 211 DVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDK-E-GNLWVGESGHEN 265 (516)
Q Consensus 211 dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~-d-G~L~v~ES~~~~ 265 (516)
+-++||++.+. | +| .||+++++... + |.++++|--.++
T Consensus 73 ~p~~GDiv~f~----~-~~------------~~HVGi~~g~~~~~g~i~~lgGNq~~ 112 (129)
T TIGR02594 73 KPAYGCIAVKR----R-GG------------GGHVGFVVGKDKQTGTIIVLGGNQGD 112 (129)
T ss_pred CCCccEEEEEE----C-CC------------CCEEEEEEeEcCCCCEEEEeeCCCCC
Confidence 56999999885 1 21 68999999743 2 689999976654
No 28
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=21.67 E-value=1.8e+02 Score=31.82 Aligned_cols=115 Identities=17% Similarity=0.377 Sum_probs=70.1
Q ss_pred ccccCCCCCC-CCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecC--CC------CcccccceE
Q 010175 203 WHATINPEDV-HSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG--HE------NEKGEEIIV 273 (516)
Q Consensus 203 ~~~~i~~~dI-~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~--~~------~~~g~~~I~ 273 (516)
|+.=--+++| ++|||+.+. | .|...|+.|+.||++.+..-. |. -..|....-
T Consensus 39 W~~v~h~selp~~GDy~t~~-i------------------g~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~ 99 (438)
T TIGR03228 39 WIYACHESELPNNHDFVTVR-A------------------GRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTF 99 (438)
T ss_pred CEEEEEHHHCCCCCCeEEEE-E------------------CCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEE
Confidence 5432335556 569999866 3 235677789999999976531 11 134555566
Q ss_pred ecchhHHHHhhhccCCCCceEEecCChHHHhhcchhHHHHHHHHhcCCCccccceeeeeeecCcCCCCCCcchhH
Q 010175 274 VIPWDEWWELALKDDSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHL 348 (516)
Q Consensus 274 ~~~w~eW~~~~~kd~a~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~ 348 (516)
+=||-.|- | +.+++..-+|...+....|+.. .+-- ++. +=--|..|||.+.|... |+||+..+
T Consensus 100 ~CPYHgW~-y----~~dG~L~~vp~~~~y~~~fd~~-~~~L-~~~--rv~~y~GfIFv~l~~~a---~~~l~e~l 162 (438)
T TIGR03228 100 TCPFHAWC-Y----KSDGRLVKVKAPGEYCEGFDKA-TRGL-KKA--RIASYRGFVFVSLDVAA---TDSLEDFL 162 (438)
T ss_pred EcCCCCCc-c----cCCCceeecCcccccCCCCChh-hCCC-cce--eEEEECCEEEEEeCCCC---CCCHHHHh
Confidence 78999994 3 4567788888766665666642 1111 111 11246789999999533 45676654
No 29
>KOG4456 consensus Inner centromere protein (INCENP), C-terminal domain [Cell cycle control, cell division, chromosome partitioning]
Probab=21.60 E-value=91 Score=29.61 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=39.0
Q ss_pred CCCccccceeeeeeecCcCCCCC-Ccch----hHHHHHhhhhhhcchhHHHHHHHHHHhhhcCCCCCChhhhHHHH----
Q 010175 320 GKPYGYHNMIFSWIDTMADNYPP-PLDA----HLVVSVMSMWTRVQPAYAANMWNEALNKRLGTEDLDLHGILDEI---- 390 (516)
Q Consensus 320 G~PYGyhN~iFsWIDT~~dNyPp-pLd~----~~v~~v~s~~~~~~P~~a~~mwneALNKRLgT~gLdl~~il~ea---- 390 (516)
-++|||.++|=|=--|-+.--|. |.+. +.+.-.+-.-..=-|...+.++.- +++ +||.+|+.++
T Consensus 41 ~n~~~~~~dlnsDdstDdE~hpRkp~PtWar~~v~~eai~~qa~~pp~~v~~Ff~~-----~pk--pdLkeIF~~~~p~~ 113 (134)
T KOG4456|consen 41 ANDYGVESDLNSDDSTDDEKHPRKPFPTWARDMVIVEAIEEQAKNPPFNVNTFFGS-----MPK--PDLKEIFGEMVPSK 113 (134)
T ss_pred CCccchhhhcccccccccccCCCCCCchhhhhchHHHHHHHHhhCCchHHHHHhcc-----cCC--cCHHHHHHhhhhhh
Confidence 57899999996655555444333 3332 222222222222223444445432 233 7999999887
Q ss_pred HHcCCC
Q 010175 391 EKRGIS 396 (516)
Q Consensus 391 ~krg~s 396 (516)
.|||.|
T Consensus 114 ~KR~SS 119 (134)
T KOG4456|consen 114 KKRGSS 119 (134)
T ss_pred hhcccc
Confidence 678887
No 30
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=21.38 E-value=61 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHhcCccCC
Q 010175 416 STTCVAFILEMYKEAGVFGP 435 (516)
Q Consensus 416 S~~CsafV~~myKaAGlFg~ 435 (516)
.+=||.||..+|+++|+-=+
T Consensus 13 g~DCsglV~~~~~~~Gi~l~ 32 (105)
T PF00877_consen 13 GFDCSGLVRWVYRQAGINLP 32 (105)
T ss_dssp EB-HHHHHHHHHHTTTEE--
T ss_pred CcCcHHHHHHHHHHhCCCCC
Confidence 56799999999999998543
No 31
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=20.08 E-value=1e+02 Score=22.42 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=11.0
Q ss_pred cCcceeEEEEEcCCCcEEEE
Q 010175 240 AFAGHTAVCLKDKEGNLWVG 259 (516)
Q Consensus 240 s~~GHtav~Lrd~dG~L~v~ 259 (516)
++.||+++.+. ++++||.
T Consensus 1 pR~~h~~~~~~--~~~i~v~ 18 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVF 18 (49)
T ss_dssp --BS-EEEEE---TTEEEEE
T ss_pred CcceEEEEEEe--CCeEEEE
Confidence 36899997773 5788864
Done!