Query 010175
Match_columns 516
No_of_seqs 55 out of 57
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 99.4 6.3E-13 2.2E-17 125.3 13.1 161 209-456 37-207 (214)
2 2if6_A Hypothetical protein YI 99.3 1.5E-11 5E-16 112.0 11.6 101 208-325 1-101 (186)
3 4h4j_A Hypothetical protein; P 89.5 0.55 1.9E-05 45.6 6.4 71 209-298 168-238 (240)
4 2jyx_A Lipoprotein SPR; soluti 80.1 2 6.9E-05 37.5 4.8 52 206-282 62-114 (136)
5 2im9_A Hypothetical protein; s 78.7 4 0.00014 41.7 7.1 63 210-283 239-302 (333)
6 2p1g_A Putative xylanase; stru 76.7 6.1 0.00021 38.8 7.6 55 210-282 170-226 (249)
7 2k1g_A Lipoprotein SPR; soluti 59.9 5.5 0.00019 35.3 3.0 51 206-281 62-113 (135)
8 2hbw_A NLP/P60 protein; NLP/P6 48.5 24 0.00083 33.7 5.6 53 206-279 155-207 (235)
9 4hpe_A Putative cell WALL hydr 36.0 14 0.00048 36.5 1.9 40 206-261 243-282 (308)
10 3gt2_A Putative uncharacterize 34.4 51 0.0017 28.7 5.0 31 206-255 84-114 (142)
11 4fdy_A Similar to lipoprotein, 32.8 29 0.00099 34.7 3.6 40 206-261 247-286 (313)
12 3a2z_A Bifunctional glutathion 32.4 50 0.0017 31.2 4.9 43 209-264 109-151 (197)
13 3jxo_A TRKA-N domain protein; 31.2 43 0.0015 25.7 3.7 28 209-239 58-85 (86)
14 3npf_A Putative dipeptidyl-pep 26.9 71 0.0024 30.7 5.1 41 208-262 217-257 (306)
15 3pbi_A Invasion protein; pepti 25.6 59 0.002 30.8 4.2 51 206-281 153-203 (214)
16 2vob_A Trypanothione synthetas 25.0 57 0.0019 35.8 4.4 43 208-264 108-150 (652)
17 2jrn_A CHAP domain protein; mo 23.7 2.2E+02 0.0074 26.5 7.4 24 241-264 106-130 (163)
18 3h41_A NLP/P60 family protein; 23.4 55 0.0019 32.0 3.6 40 206-262 244-283 (311)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=99.44 E-value=6.3e-13 Score=125.31 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=116.4
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhh--c
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELAL--K 286 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~--k 286 (516)
++++++||+|.+. |+ +.++.+|+++|+|..+|++|++.+ +++++|+||.. ..||++.++++|.+..- .
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~~~~~~~ 106 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIKNYENSN 106 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHHCGGGSS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHHHhhccc
Confidence 5899999999997 67 889999999999999999999986 68999999964 36799999999985210 1
Q ss_pred cCCCCceEEecC--------ChHHHhhcchhHHHHHHHHhcCCCccccceeeeeeecCcCCCCCCcchhHHHHHhhhhhh
Q 010175 287 DDSNPQIALLPL--------HPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHLVVSVMSMWTR 358 (516)
Q Consensus 287 d~a~~~va~LPL--------~~e~RakFN~tAA~ef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~v~~v~s~~~~ 358 (516)
+.++..|++..| .++.+ .++.+|+.++.|+||++.+++ .+.-|
T Consensus 107 ~~y~~~i~V~Rl~~~~~v~lt~~~~-----~~l~~~a~~~lGkpYd~~~~~------------------------~l~~r 157 (214)
T 3kw0_A 107 NRYNGSLFIARHELLQNVNDDSEMI-----RNLIKVGFSLLNSGYDKNEIA------------------------QIVAR 157 (214)
T ss_dssp SCCSEEEEEEEEGGGTTSCTTSHHH-----HHHHHHHHHHCCSCCCHHHHH------------------------HHHHH
T ss_pred ccccCceEEEEeccccccCCCHHHH-----HHHHHHHHHhcCCCCCcHHHH------------------------HHHHh
Confidence 234456888654 44544 458999999999999976554 11101
Q ss_pred cchhHHHHHHHHHHhhhcCCCCCChhhhHHHHHHcCCChhhhcCcccCCcccccCCCcchHHHHHHHHHHhcCccCCCcC
Q 010175 359 VQPAYAANMWNEALNKRLGTEDLDLHGILDEIEKRGISFDQLLTIPEQDEWVYSDGKSTTCVAFILEMYKEAGVFGPISN 438 (516)
Q Consensus 359 ~~P~~a~~mwneALNKRLgT~gLdl~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~~~~ 438 (516)
. + .|+.+ -.+...+.||.||+++|+++|+--.
T Consensus 158 ~---------------------------~-----~~~~~-------------~~~~~~~~CSelv~~a~~~~g~~~~--- 189 (214)
T 3kw0_A 158 I---------------------------G-----LGIGR-------------HEDNNEYICSEFVNECFKKIGVEFL--- 189 (214)
T ss_dssp H---------------------------H-----HTCCC-------------CSSCCCCCHHHHHHHHHHTTTCCCC---
T ss_pred h---------------------------h-----hcccc-------------cCCCCcEEeHHHHHHHHHHcCCCcc---
Confidence 0 0 12221 1367889999999999999998542
Q ss_pred ceeecccccccceeeecc
Q 010175 439 SIQVTEFTIRDAYMLKIF 456 (516)
Q Consensus 439 sIn~tEFTp~D~Y~l~iF 456 (516)
.-+..-+||.|..+-.-+
T Consensus 190 ~~~~~~v~P~dl~~s~~l 207 (214)
T 3kw0_A 190 TDSEGFIFPEHIAADHHV 207 (214)
T ss_dssp -----CCCHHHHHHCTTE
T ss_pred CCCCCEEecHHHhCCCCc
Confidence 225667999998765433
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=99.29 E-value=1.5e-11 Score=112.03 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhhcc
Q 010175 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD 287 (516)
Q Consensus 208 ~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~kd 287 (516)
+++++|+||+|.+. |+ +.++.+|+.+|++..+|++|.+.+ +|+.+|+|+.. +|++.++++|...
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~~---- 64 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIAH---- 64 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHHT----
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHhh----
Confidence 46789999999886 66 788999999999999999999975 68899999972 6999999999752
Q ss_pred CCCCceEEecCChHHHhhcchhHHHHHHHHhcCCCccc
Q 010175 288 DSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGY 325 (516)
Q Consensus 288 ~a~~~va~LPL~~e~RakFN~tAA~ef~~~~eG~PYGy 325 (516)
..+.++++.+|+.++.+. ...++.+++.++.|+||+|
T Consensus 65 ~~~~~~~v~Rl~~~ls~~-~~~~~~~~a~~~~G~pY~~ 101 (186)
T 2if6_A 65 GEKGKYVVRRVEGGLSVE-QQQKLAQTAKRYLGKPYDF 101 (186)
T ss_dssp SGGGCEEEEEETTCCCHH-HHHHHHHHHGGGTTCCBCT
T ss_pred ccCCcEEEEEeCCCCCHH-HHHHHHHHHHHHcCCcCCc
Confidence 223478998887532221 2356888999999999997
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=89.45 E-value=0.55 Score=45.61 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHhhhccC
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~kd~ 288 (516)
.+.||+||+|+|..= ..|--+.|+.+++|. +|+++...... ..++-.|...|+.|+.. .+.
T Consensus 168 ~~~l~~GDiIai~t~-------------~~GLDvsH~Giai~~-~~~l~l~hASS--~~~~vvv~d~pl~~Yl~---~~~ 228 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN-------------TPGLDVAHMGIAFYA-DNKLLLVHASS--TDKKVVVSKVPLSQMLK---DNN 228 (240)
T ss_dssp CTTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEET--TTTEEEECSSCHHHHHH---HCT
T ss_pred HhhCCCCcEEEEEec-------------CCCceEEEEEEEEEE-CCeEEEEEcCC--CCCceEEcCccHHHHHh---hCC
Confidence 467999999999832 257788999999995 88899988665 44555666789999985 233
Q ss_pred CCCceEEecC
Q 010175 289 SNPQIALLPL 298 (516)
Q Consensus 289 a~~~va~LPL 298 (516)
+.+-|.++.+
T Consensus 229 ~~~GI~V~R~ 238 (240)
T 4h4j_A 229 KWTGIRVLRM 238 (240)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCeEEEEe
Confidence 4445666654
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=80.11 E-value=2 Score=37.46 Aligned_cols=52 Identities=12% Similarity=0.447 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhH-HHH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE-WWE 282 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~e-W~~ 282 (516)
.++.+++++||+|.+. +|+.++|.+|.+= +|+ +|++.. ..+|++.+.++ ||.
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~-----~~gV~i~~l~~~yw~ 114 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHAST-----SSGVIISSMNEPYWK 114 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEET-----TTEEEEEETTSHHHH
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECC-----CCCEEEEECCchHhH
Confidence 5677899999999886 1234789999883 454 555543 13577777765 553
No 5
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=78.70 E-value=4 Score=41.71 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCCCCCCEEEEeeecccCCchhhHHHhh-hCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHHHh
Q 010175 210 EDVHSGDFLAVSKIRGRWGGFETLEKWV-TGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWEL 283 (516)
Q Consensus 210 ~dI~sGDflai~kirGr~~Gf~~l~kw~-tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~ 283 (516)
+.||+||+|+|..= .| .|.++. +|--+.|++++.|. +|+|+..-.-.. .+ .|.-.|+.|+...
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~~ 302 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLDK 302 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHHH
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHhh
Confidence 78999999999942 12 122332 57889999999997 789998765553 22 4558889999863
No 6
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=76.75 E-value=6.1 Score=38.82 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=41.4
Q ss_pred CCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEe--cchhHHHH
Q 010175 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVV--IPWDEWWE 282 (516)
Q Consensus 210 ~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~--~~w~eW~~ 282 (516)
+.|++||+|+|..= ..|--++|+.++.+. +|+++.+-+... .+ .|.. .++.|++.
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~--~~--kVv~s~~~l~~Y~~ 226 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSK--EG--KVVVGKTALSQMLK 226 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETT--TT--EEEECSSCHHHHHH
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCC--CC--eEEECCcCHHHHHh
Confidence 77999999999832 156678999999997 799998866552 22 3443 49999985
No 7
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=59.85 E-value=5.5 Score=35.32 Aligned_cols=51 Identities=10% Similarity=0.421 Sum_probs=32.3
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchh-HHH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWD-EWW 281 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~-eW~ 281 (516)
.|+.+++||||+|-+. +|+.+.|+++.+= +|+ +|++... .+|++.+.+ .||
T Consensus 62 ~V~~~~l~pGDLvFf~----------------~~~~~~HVGIyiG--~g~--~IHA~~~-----~gV~i~~l~~~yw 113 (135)
T 2k1g_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYW 113 (135)
T ss_dssp EECGGGCCTTEEEEEE----------------ETTTEEEEEEEEE--TTE--EEEEETT-----TEEEEEETTSHHH
T ss_pred EecHHHccCCcEEEEC----------------CCCCCeEEEEEec--CCE--EEEECCC-----CCEEEEeCCCHHh
Confidence 5677899999998875 2345679998884 566 3444321 235555553 344
No 8
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=48.53 E-value=24 Score=33.70 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=36.0
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE 279 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~e 279 (516)
.|+.+++++||+|-+. ++..++|++|.+- +|++ |.+... ..|..+|++.+.++
T Consensus 155 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~~--IHa~~~-~~g~~gV~i~~l~~ 207 (235)
T 2hbw_A 155 AITIDELAPGDLVFFG----------------TPVKATHVGLYLG--DGCY--IHSSGK-AQGRDGIGIDILSE 207 (235)
T ss_dssp EECGGGCCTTCEEEEE----------------CSSCEEEEEEEEE--TTEE--EEEECT-TTSCSEEEEEESST
T ss_pred cccHhhCCCCCEEEEC----------------CCCCCCEEEEEeC--CCEE--EEECCC-CCCCCCEEEEECCc
Confidence 4667889999998876 1246899999884 5653 444321 23556788877765
No 9
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=36.00 E-value=14 Score=36.48 Aligned_cols=40 Identities=10% Similarity=0.337 Sum_probs=28.6
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEec
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGES 261 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES 261 (516)
.++.++++|||+|.+. +. +..|..++|+++.+= +|+ +|.+
T Consensus 243 ~v~~~~l~pGDLvff~---~~---------~~~~~~~~HVgIy~G--~g~--~iha 282 (308)
T 4hpe_A 243 HLPLSQAKAGDLVFFH---ST---------YNAGSYVTHVGIYVG--NNQ--MYHA 282 (308)
T ss_dssp EECGGGCCTTCEEEEE---CS---------SSCSSSEEEEEEECS--TTE--EEEC
T ss_pred eechhhCCCCCEEEEc---CC---------CCCCCCccEEEEEEc--CCE--EEEe
Confidence 4677899999999887 21 234667899998883 565 4454
No 10
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=34.37 E-value=51 Score=28.74 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=22.4
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCc
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGN 255 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~ 255 (516)
.++.+++++||+|.+. . + | ++|.+|.|- +|+
T Consensus 84 ~v~~~~~~pGDlvff~----~-~----------~--~~HVgIy~G--~g~ 114 (142)
T 3gt2_A 84 KILPQQARKGDLIFYG----P-E----------G--TQSVAMYLG--NNQ 114 (142)
T ss_dssp EECGGGCCTTCEEEES----G-G----------G--CSEEEEEEE--TTE
T ss_pred eechhhCCCCCEEEeC----C-C----------C--CCEEEEEec--CCE
Confidence 4567899999999764 1 1 1 589999885 455
No 11
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=32.83 E-value=29 Score=34.66 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=28.4
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEec
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGES 261 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES 261 (516)
.++.++++|||+|.+. +. +..|..++|++|.|- +|+ +|.+
T Consensus 247 ~V~~~~lqpGDLvff~---~~---------~~~g~~~~HVGIYlG--~g~--~IHA 286 (313)
T 4fdy_A 247 EISMEEAQAGDLIFFH---ST---------YNAGTYVTHVAIYLE--GNR--FYHA 286 (313)
T ss_dssp EECTTTCCTTCEEEES---SS---------SCCSSSCCEEEEEEE--TTE--EEES
T ss_pred eechhhCCCCCEEEEe---cC---------CCCCCCCcEEEEEec--CCE--EEEe
Confidence 4677899999999886 11 234567899999984 565 4555
No 12
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=32.35 E-value=50 Score=31.20 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCC
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE 264 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~ 264 (516)
+..=+.||+|... +| ..+...||+||+..-.++.+.|+|....
T Consensus 109 ~~~P~~Gdl~V~~------~g-------~~~~~yGHVAvV~~V~~~~i~i~EQN~~ 151 (197)
T 3a2z_A 109 PRAPVAGALLIWD------KG-------GEFKDTGHVAIITQLHGNKVRIAEQNVI 151 (197)
T ss_dssp SSCCCTTCEEEEC------SC-------GGGTTTCEEEEEEEECSSEEEEECSSSC
T ss_pred CCCCCCCeEEEEC------CC-------CcCCCCccEEEEEEEcCCeEEEEecccC
Confidence 3455889999887 21 0146789999999866789999998664
No 13
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=31.23 E-value=43 Score=25.75 Aligned_cols=28 Identities=32% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCCCCCCCEEEEeeecccCCchhhHHHhhhC
Q 010175 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTG 239 (516)
Q Consensus 209 ~~dI~sGDflai~kirGr~~Gf~~l~kw~tG 239 (516)
...+++||.|.|. |+-+.++.+.++.+|
T Consensus 58 ~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 58 DTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 5679999999988 777888888887664
No 14
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=26.88 E-value=71 Score=30.68 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecC
Q 010175 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (516)
Q Consensus 208 ~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~ 262 (516)
+.+++++||+|-+..- +. -..+..++|.+|.+= +|+ +|.+.
T Consensus 217 ~~~~~~pGDLvff~~~-~~---------~~~~~~~~Hvgiy~g--~~~--~iha~ 257 (306)
T 3npf_A 217 DFSNVKRGDLVFFGRK-AT---------AERKEGISHVGIYLG--NKQ--FIHAL 257 (306)
T ss_dssp TCTTCCTTCEEEEEEC-CC---------SSSCCEEEEEEEEEE--TTE--EEEES
T ss_pred ccccCCCccEEEECCC-Cc---------cCCCCCCeEEEEEEC--CCE--EEEcC
Confidence 3489999999887720 10 013566889999884 464 45553
No 15
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=25.60 E-value=59 Score=30.84 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=32.9
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCCCcccccceEecchhHHH
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWW 281 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~ 281 (516)
.++.+++|+||+|.+. +| ..+|++|.|= +|+ +|++... ...|++.+...||
T Consensus 153 ~V~~~~lqpGDLVff~----------------~g-~~~HVgIYlG--~g~--~IHA~~~----~~~V~i~~l~~~~ 203 (214)
T 3pbi_A 153 HVPPAEAKRGDLIFYG----------------PG-GGQHVTLYLG--NGQ--MLEASGS----AGKVTVSPVRKAG 203 (214)
T ss_dssp EECGGGCCTTCEEEES----------------GG-GCSEEEEEEE--TTE--EEEEETT----TTEEEEEECCCTT
T ss_pred eechhhCCCCCEEEec----------------CC-CCCEEEEEec--CCE--EEEECCC----CCcEEEEECcccC
Confidence 4567899999998874 11 1479999884 565 4555442 2346666666654
No 16
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=25.00 E-value=57 Score=35.76 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=33.4
Q ss_pred CCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecCCC
Q 010175 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE 264 (516)
Q Consensus 208 ~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~~~ 264 (516)
+...-+.||+|+..+ + .+.-.||+||+..-.++.++|+|--..
T Consensus 108 ~~~~P~~GdllV~~~--~------------~~~p~GHVAVV~~V~~~~v~i~EQN~~ 150 (652)
T 2vob_A 108 TTTKPEADALLVYPS--T------------DANPVGHVGTITEVGDDYVCVADQNYR 150 (652)
T ss_dssp BSSCCCSSEEEEECC--C------------SSCTTCEEEEEEEECSSEEEEECSSSC
T ss_pred CCCCCCCceEEEEcC--C------------CCCCCCcEEEEEEecCCEEEEEEecCC
Confidence 344668999999993 2 356789999999876799999997554
No 17
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A 2lrj_A
Probab=23.68 E-value=2.2e+02 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.2
Q ss_pred CcceeEEEEE-cCCCcEEEEecCCC
Q 010175 241 FAGHTAVCLK-DKEGNLWVGESGHE 264 (516)
Q Consensus 241 ~~GHtav~Lr-d~dG~L~v~ES~~~ 264 (516)
.-||+|++-. +.||.+.|.|+...
T Consensus 106 ~YGHVAvVe~V~~DGsI~IsE~Ny~ 130 (163)
T 2jrn_A 106 GYGHVAYVENVNSDGSVEVSEMNYN 130 (163)
T ss_dssp TTCEEEEEEECSSSSCEEEEEESTT
T ss_pred CCCEEEEEEEECCCCcEEEEEcccC
Confidence 5799998887 66899999998763
No 18
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=23.44 E-value=55 Score=31.96 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=27.5
Q ss_pred cCCCCCCCCCCEEEEeeecccCCchhhHHHhhhCcCcceeEEEEEcCCCcEEEEecC
Q 010175 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESG 262 (516)
Q Consensus 206 ~i~~~dI~sGDflai~kirGr~~Gf~~l~kw~tGs~~GHtav~Lrd~dG~L~v~ES~ 262 (516)
.++.+++++||+|.+..=.| ...++|.+|.+= +|+ +|.+.
T Consensus 244 ~v~~~~~~pGDlvff~~~~~-------------~~~~~HVgiy~G--~g~--~iha~ 283 (311)
T 3h41_A 244 AVDKEHLQKGDLIFFAHDQG-------------KGSVHHVAMYIG--DGN--MIHSP 283 (311)
T ss_dssp EECGGGCCTTCEEEEEHHHH-------------TSCEEEEEEEEE--TTE--EEECC
T ss_pred EEcHHHCCCCCEEEEecCCC-------------CCCCcEEEEEEe--CCE--EEEEC
Confidence 56778999999999872111 245789999884 464 45553
Done!