Query 010176
Match_columns 516
No_of_seqs 390 out of 1700
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2187 Uncharacterized protei 100.0 5.8E-33 1.2E-37 276.7 7.4 150 22-183 130-307 (337)
2 COG4185 Uncharacterized protei 99.9 2.9E-26 6.2E-31 212.3 16.6 172 211-450 1-173 (187)
3 PF06414 Zeta_toxin: Zeta toxi 99.9 1.8E-24 3.9E-29 208.0 15.8 172 208-433 11-190 (199)
4 PF13671 AAA_33: AAA domain; P 99.7 9.1E-16 2E-20 138.0 14.4 138 214-412 1-140 (143)
5 COG0645 Predicted kinase [Gene 99.7 1.5E-15 3.1E-20 142.8 13.9 123 212-394 1-126 (170)
6 PHA02530 pseT polynucleotide k 99.6 7.9E-15 1.7E-19 148.7 18.2 144 211-416 1-144 (300)
7 PRK06762 hypothetical protein; 99.5 1.1E-13 2.4E-18 128.6 13.5 133 211-411 1-133 (166)
8 TIGR01663 PNK-3'Pase polynucle 99.5 2.2E-13 4.8E-18 149.0 13.8 108 209-397 366-473 (526)
9 TIGR01313 therm_gnt_kin carboh 99.4 2.8E-12 6E-17 118.8 16.1 147 215-432 1-147 (163)
10 COG4639 Predicted kinase [Gene 99.4 2.9E-12 6.3E-17 119.1 14.1 132 211-411 1-132 (168)
11 cd02021 GntK Gluconate kinase 99.4 7.2E-12 1.6E-16 114.4 15.4 132 214-410 1-133 (150)
12 cd00227 CPT Chloramphenicol (C 99.4 7.3E-12 1.6E-16 118.0 13.2 128 212-393 2-132 (175)
13 PRK12339 2-phosphoglycerate ki 99.3 3.7E-11 7.9E-16 116.5 17.0 139 211-413 2-161 (197)
14 TIGR03574 selen_PSTK L-seryl-t 99.3 7.4E-11 1.6E-15 117.3 15.2 134 214-414 1-134 (249)
15 cd02027 APSK Adenosine 5'-phos 99.2 1.1E-10 2.4E-15 107.8 12.5 115 214-390 1-115 (149)
16 TIGR00455 apsK adenylylsulfate 99.2 3.1E-10 6.7E-15 107.6 13.5 97 209-319 15-111 (184)
17 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 5.4E-10 1.2E-14 105.1 14.8 156 214-432 1-168 (183)
18 PRK14527 adenylate kinase; Pro 99.1 2.1E-09 4.5E-14 102.7 17.5 149 209-417 3-158 (191)
19 PRK12337 2-phosphoglycerate ki 99.1 2.2E-09 4.7E-14 115.7 19.4 171 169-410 220-422 (475)
20 KOG3354 Gluconate kinase [Carb 99.1 6.5E-10 1.4E-14 103.5 13.2 139 209-404 9-147 (191)
21 PF01583 APS_kinase: Adenylyls 99.1 9.2E-10 2E-14 103.2 12.9 95 211-319 1-95 (156)
22 PRK14532 adenylate kinase; Pro 99.1 2.2E-09 4.9E-14 101.8 14.4 123 215-400 3-135 (188)
23 PRK06696 uridine kinase; Valid 99.1 3.2E-10 7E-15 111.2 8.5 54 209-264 19-72 (223)
24 PLN02200 adenylate kinase fami 99.0 8.8E-09 1.9E-13 102.4 17.2 162 204-432 35-208 (234)
25 PRK14531 adenylate kinase; Pro 99.0 5.9E-09 1.3E-13 99.2 14.8 156 212-431 2-167 (183)
26 PRK12338 hypothetical protein; 99.0 8.7E-09 1.9E-13 106.7 17.1 128 210-398 2-156 (319)
27 COG3265 GntK Gluconate kinase 99.0 2.8E-09 6.2E-14 98.6 11.5 122 219-407 2-123 (161)
28 PF07931 CPT: Chloramphenicol 99.0 4.2E-09 9.1E-14 100.4 12.6 121 213-393 2-131 (174)
29 COG4088 Predicted nucleotide k 99.0 3.9E-09 8.4E-14 102.6 11.9 141 213-417 2-143 (261)
30 PRK09825 idnK D-gluconate kina 99.0 1.2E-08 2.5E-13 97.2 15.0 122 212-403 3-127 (176)
31 TIGR01360 aden_kin_iso1 adenyl 99.0 2.8E-08 6.1E-13 93.3 17.4 124 213-400 4-135 (188)
32 PRK05506 bifunctional sulfate 99.0 4.9E-09 1.1E-13 117.8 13.0 96 210-319 458-553 (632)
33 PRK03846 adenylylsulfate kinas 98.9 8.1E-09 1.8E-13 99.4 12.4 96 209-319 21-117 (198)
34 PRK11545 gntK gluconate kinase 98.9 9.4E-09 2E-13 96.4 11.9 110 218-393 1-112 (163)
35 PRK00889 adenylylsulfate kinas 98.9 1.3E-08 2.9E-13 95.6 12.7 90 211-315 3-93 (175)
36 PRK06761 hypothetical protein; 98.9 6.6E-09 1.4E-13 106.1 11.5 148 212-436 3-151 (282)
37 PRK05537 bifunctional sulfate 98.9 1E-08 2.2E-13 114.0 13.2 101 207-320 387-487 (568)
38 PRK05541 adenylylsulfate kinas 98.9 2.3E-08 4.9E-13 94.1 13.2 85 209-308 4-88 (176)
39 PF08433 KTI12: Chromatin asso 98.9 1.5E-08 3.2E-13 103.0 12.4 139 214-416 3-141 (270)
40 COG0529 CysC Adenylylsulfate k 98.9 1.9E-08 4.2E-13 95.7 12.0 92 208-314 19-111 (197)
41 cd02020 CMPK Cytidine monophos 98.9 2.9E-08 6.3E-13 89.3 11.8 125 214-414 1-125 (147)
42 PRK01184 hypothetical protein; 98.8 2.2E-07 4.7E-12 87.9 17.6 30 213-250 2-31 (184)
43 COG0572 Udk Uridine kinase [Nu 98.8 9E-09 2E-13 101.1 7.7 173 210-423 6-186 (218)
44 PRK00279 adk adenylate kinase; 98.8 1.6E-07 3.5E-12 91.5 15.9 33 214-253 2-34 (215)
45 cd01428 ADK Adenylate kinase ( 98.8 4.1E-07 9E-12 86.0 18.3 32 215-253 2-33 (194)
46 TIGR01351 adk adenylate kinase 98.8 1.2E-07 2.7E-12 92.0 15.0 31 215-252 2-32 (210)
47 PRK06547 hypothetical protein; 98.8 6E-08 1.3E-12 92.2 12.6 40 208-254 11-50 (172)
48 PRK04220 2-phosphoglycerate ki 98.8 3.6E-07 7.7E-12 94.1 18.4 101 208-314 88-206 (301)
49 TIGR03575 selen_PSTK_euk L-ser 98.7 2.6E-07 5.6E-12 96.8 15.7 149 214-414 1-193 (340)
50 cd00464 SK Shikimate kinase (S 98.7 5.9E-07 1.3E-11 81.6 14.7 33 215-254 2-34 (154)
51 COG1102 Cmk Cytidylate kinase 98.7 2.3E-07 4.9E-12 87.3 12.0 80 214-308 2-83 (179)
52 PRK14530 adenylate kinase; Pro 98.7 9.5E-07 2.1E-11 86.0 17.0 35 211-253 3-37 (215)
53 PRK07261 topology modulation p 98.7 9.8E-08 2.1E-12 90.3 9.6 103 215-398 3-106 (171)
54 PRK00131 aroK shikimate kinase 98.7 1.2E-06 2.6E-11 80.9 16.5 38 210-254 2-39 (175)
55 PRK13946 shikimate kinase; Pro 98.7 8.1E-07 1.7E-11 84.7 15.7 39 208-253 6-44 (184)
56 TIGR02173 cyt_kin_arch cytidyl 98.7 3.3E-07 7.1E-12 84.8 12.6 32 214-252 2-33 (171)
57 PRK04182 cytidylate kinase; Pr 98.7 7.7E-07 1.7E-11 82.8 15.0 32 214-252 2-33 (180)
58 PRK10078 ribose 1,5-bisphospho 98.6 8.1E-07 1.8E-11 84.6 14.2 26 212-237 2-27 (186)
59 PRK13947 shikimate kinase; Pro 98.6 1.8E-06 4E-11 80.3 16.0 33 215-254 4-36 (171)
60 PRK06217 hypothetical protein; 98.6 2.2E-07 4.7E-12 88.3 9.5 35 214-255 3-37 (183)
61 PRK14528 adenylate kinase; Pro 98.6 6.4E-07 1.4E-11 85.7 12.5 44 375-418 111-155 (186)
62 PRK02496 adk adenylate kinase; 98.6 1.4E-06 3E-11 82.5 14.4 32 215-253 4-35 (184)
63 PRK14730 coaE dephospho-CoA ki 98.6 3.3E-07 7.2E-12 88.6 10.3 35 214-255 3-37 (195)
64 PRK00081 coaE dephospho-CoA ki 98.6 1.2E-06 2.6E-11 84.4 14.0 36 212-255 2-37 (194)
65 PTZ00301 uridine kinase; Provi 98.6 1.9E-07 4.1E-12 91.6 8.3 43 213-256 4-47 (210)
66 PRK15453 phosphoribulokinase; 98.6 5E-07 1.1E-11 92.2 11.6 46 210-257 3-48 (290)
67 PTZ00322 6-phosphofructo-2-kin 98.6 1.6E-06 3.4E-11 98.4 16.9 161 211-421 214-375 (664)
68 PF13207 AAA_17: AAA domain; P 98.5 1.9E-07 4E-12 81.8 7.3 33 214-253 1-33 (121)
69 PRK14731 coaE dephospho-CoA ki 98.5 1.3E-06 2.8E-11 85.2 13.7 37 210-254 3-39 (208)
70 COG2074 2-phosphoglycerate kin 98.5 1.7E-06 3.6E-11 86.6 14.5 136 208-402 85-240 (299)
71 PRK04040 adenylate kinase; Pro 98.5 1.1E-06 2.4E-11 84.6 12.8 37 212-253 2-38 (188)
72 PF01591 6PF2K: 6-phosphofruct 98.5 5.3E-06 1.1E-10 82.2 17.6 103 209-320 9-118 (222)
73 PRK13948 shikimate kinase; Pro 98.5 2.2E-06 4.7E-11 82.4 14.1 39 209-254 7-45 (182)
74 PRK03731 aroL shikimate kinase 98.5 5.8E-06 1.3E-10 77.2 16.1 34 214-254 4-37 (171)
75 TIGR00152 dephospho-CoA kinase 98.5 7.9E-07 1.7E-11 84.8 10.5 34 214-254 1-34 (188)
76 PRK03839 putative kinase; Prov 98.5 3.3E-07 7.2E-12 86.4 7.8 34 214-254 2-35 (180)
77 PRK08233 hypothetical protein; 98.5 2.2E-06 4.8E-11 80.0 13.2 27 211-237 2-28 (182)
78 PRK14734 coaE dephospho-CoA ki 98.5 1.8E-06 3.9E-11 83.8 12.9 34 213-254 2-35 (200)
79 PRK14737 gmk guanylate kinase; 98.5 6.5E-07 1.4E-11 86.1 9.7 27 210-236 2-28 (186)
80 PRK13973 thymidylate kinase; P 98.5 2.3E-05 4.9E-10 76.6 20.4 94 211-307 2-98 (213)
81 PLN02348 phosphoribulokinase 98.5 2.2E-06 4.7E-11 91.2 14.0 49 209-257 46-107 (395)
82 PRK14732 coaE dephospho-CoA ki 98.5 2.5E-06 5.5E-11 82.7 13.5 34 214-255 1-34 (196)
83 PRK05480 uridine/cytidine kina 98.5 2.1E-06 4.5E-11 83.0 12.8 42 210-255 4-45 (209)
84 PRK09270 nucleoside triphospha 98.5 6E-06 1.3E-10 81.4 16.1 50 208-259 29-79 (229)
85 TIGR02322 phosphon_PhnN phosph 98.5 2.6E-06 5.6E-11 80.1 12.9 25 213-237 2-26 (179)
86 cd02029 PRK_like Phosphoribulo 98.4 8.4E-07 1.8E-11 90.0 9.9 41 214-256 1-41 (277)
87 PRK08356 hypothetical protein; 98.4 1.3E-05 2.8E-10 77.1 17.5 32 213-252 6-37 (195)
88 PRK00698 tmk thymidylate kinas 98.4 3.1E-05 6.7E-10 73.8 19.9 26 211-236 2-27 (205)
89 PRK14733 coaE dephospho-CoA ki 98.4 2.1E-06 4.6E-11 84.0 12.0 38 210-254 4-41 (204)
90 cd01672 TMPK Thymidine monopho 98.4 2.5E-05 5.5E-10 73.4 18.9 24 213-236 1-24 (200)
91 COG0194 Gmk Guanylate kinase [ 98.4 6.2E-07 1.3E-11 86.2 8.0 86 211-307 3-102 (191)
92 PRK13808 adenylate kinase; Pro 98.4 1.3E-06 2.9E-11 91.2 10.8 32 215-253 3-34 (333)
93 cd02022 DPCK Dephospho-coenzym 98.4 2.6E-06 5.6E-11 80.9 11.9 34 214-255 1-34 (179)
94 TIGR03263 guanyl_kin guanylate 98.4 5.7E-07 1.2E-11 84.4 7.3 24 213-236 2-25 (180)
95 PRK08118 topology modulation p 98.4 1.8E-06 3.9E-11 81.5 9.9 32 215-253 4-35 (167)
96 TIGR00017 cmk cytidylate kinas 98.4 1.2E-05 2.5E-10 79.4 15.9 36 212-254 2-37 (217)
97 PF00485 PRK: Phosphoribulokin 98.4 2.2E-06 4.7E-11 82.2 10.4 41 214-254 1-43 (194)
98 PRK00625 shikimate kinase; Pro 98.4 2.2E-05 4.7E-10 74.9 16.7 33 214-253 2-34 (173)
99 cd01673 dNK Deoxyribonucleosid 98.4 8.9E-06 1.9E-10 77.4 14.0 24 214-237 1-24 (193)
100 KOG3079 Uridylate kinase/adeny 98.3 2.6E-05 5.7E-10 74.9 15.4 154 208-416 4-158 (195)
101 COG0237 CoaE Dephospho-CoA kin 98.3 5E-06 1.1E-10 81.2 10.7 36 212-255 2-37 (201)
102 PF01121 CoaE: Dephospho-CoA k 98.3 4.8E-06 1E-10 79.9 10.3 33 214-254 2-34 (180)
103 TIGR00041 DTMP_kinase thymidyl 98.3 0.00014 3E-09 69.2 20.0 26 212-237 3-28 (195)
104 PLN02674 adenylate kinase 98.3 1.5E-05 3.2E-10 80.2 13.8 35 212-253 31-65 (244)
105 PTZ00451 dephospho-CoA kinase; 98.3 9.1E-06 2E-10 81.6 12.4 36 213-255 2-37 (244)
106 PF13238 AAA_18: AAA domain; P 98.3 1.8E-06 3.9E-11 75.5 6.1 22 215-236 1-22 (129)
107 PRK05057 aroK shikimate kinase 98.2 3.5E-05 7.7E-10 72.9 15.3 35 212-253 4-38 (172)
108 PRK07667 uridine kinase; Provi 98.2 1.2E-05 2.5E-10 77.5 12.1 43 210-254 15-57 (193)
109 cd02028 UMPK_like Uridine mono 98.2 2.2E-06 4.7E-11 81.7 7.0 41 214-256 1-41 (179)
110 PRK00300 gmk guanylate kinase; 98.2 7.4E-06 1.6E-10 78.5 10.4 27 210-236 3-29 (205)
111 PRK07429 phosphoribulokinase; 98.2 1.7E-05 3.7E-10 82.8 13.3 46 208-257 4-49 (327)
112 PRK08154 anaerobic benzoate ca 98.2 3.7E-05 8E-10 79.5 15.7 38 208-252 129-166 (309)
113 PRK13949 shikimate kinase; Pro 98.2 9.7E-05 2.1E-09 69.9 17.2 32 215-253 4-35 (169)
114 TIGR00235 udk uridine kinase. 98.2 2.3E-05 5E-10 75.9 13.0 42 209-254 3-44 (207)
115 PLN02422 dephospho-CoA kinase 98.2 2.7E-05 5.8E-10 77.7 13.6 33 214-254 3-35 (232)
116 cd02030 NDUO42 NADH:Ubiquinone 98.2 5.1E-05 1.1E-09 74.4 15.4 58 375-432 146-203 (219)
117 PRK14738 gmk guanylate kinase; 98.2 9.9E-06 2.2E-10 78.8 10.1 28 208-235 9-36 (206)
118 cd02026 PRK Phosphoribulokinas 98.2 2.3E-05 4.9E-10 79.9 12.9 40 214-257 1-40 (273)
119 PLN02318 phosphoribulokinase/u 98.2 6.8E-06 1.5E-10 91.3 9.5 39 210-254 63-101 (656)
120 PRK00091 miaA tRNA delta(2)-is 98.2 3.5E-05 7.6E-10 79.9 14.2 84 210-304 2-99 (307)
121 cd02023 UMPK Uridine monophosp 98.1 3.2E-05 6.9E-10 74.1 12.7 37 214-254 1-37 (198)
122 cd02025 PanK Pantothenate kina 98.1 1.3E-05 2.8E-10 79.1 9.5 43 214-256 1-43 (220)
123 PTZ00088 adenylate kinase 1; P 98.1 7E-05 1.5E-09 74.5 14.7 37 211-254 5-41 (229)
124 KOG3220 Similar to bacterial d 98.1 1.1E-05 2.4E-10 78.4 8.5 35 213-255 2-36 (225)
125 smart00072 GuKc Guanylate kina 98.1 2.3E-05 5E-10 74.6 10.4 25 212-236 2-26 (184)
126 cd02024 NRK1 Nicotinamide ribo 98.1 1.3E-05 2.7E-10 77.5 8.5 36 214-255 1-36 (187)
127 COG0703 AroK Shikimate kinase 98.1 0.00018 3.8E-09 68.8 16.1 33 215-254 5-37 (172)
128 PRK14526 adenylate kinase; Pro 98.1 4.3E-05 9.3E-10 75.1 12.4 32 215-253 3-34 (211)
129 PRK13477 bifunctional pantoate 98.1 7.2E-05 1.6E-09 82.5 15.3 38 211-255 283-320 (512)
130 PRK00023 cmk cytidylate kinase 98.0 0.00016 3.4E-09 71.6 15.9 36 211-253 3-38 (225)
131 PRK05416 glmZ(sRNA)-inactivati 98.0 7.6E-05 1.6E-09 76.7 13.3 25 210-234 4-28 (288)
132 PF00406 ADK: Adenylate kinase 98.0 0.00031 6.8E-09 64.4 16.1 29 217-252 1-29 (151)
133 PF02223 Thymidylate_kin: Thym 98.0 0.00024 5.2E-09 67.2 15.7 55 376-433 123-177 (186)
134 TIGR00554 panK_bact pantothena 98.0 6.4E-05 1.4E-09 77.4 12.2 54 208-261 58-111 (290)
135 PRK05439 pantothenate kinase; 98.0 0.00011 2.4E-09 76.4 13.9 50 208-257 82-131 (311)
136 PRK13975 thymidylate kinase; P 98.0 0.00024 5.2E-09 67.5 15.2 26 212-237 2-27 (196)
137 PRK13974 thymidylate kinase; P 98.0 0.00069 1.5E-08 66.1 18.7 26 212-237 3-28 (212)
138 PRK13951 bifunctional shikimat 97.9 0.00033 7.2E-09 77.0 17.1 33 215-254 3-35 (488)
139 COG0563 Adk Adenylate kinase a 97.9 0.00022 4.8E-09 68.4 13.6 33 215-254 3-35 (178)
140 PRK11860 bifunctional 3-phosph 97.9 0.00023 4.9E-09 81.0 16.0 37 213-256 443-479 (661)
141 PLN02459 probable adenylate ki 97.9 0.00036 7.8E-09 70.9 15.2 35 211-252 28-62 (261)
142 PF01202 SKI: Shikimate kinase 97.8 0.00076 1.6E-08 62.7 15.6 26 221-253 1-26 (158)
143 PRK03333 coaE dephospho-CoA ki 97.8 0.00017 3.8E-09 77.2 12.3 34 214-255 3-36 (395)
144 PRK14021 bifunctional shikimat 97.8 0.0008 1.7E-08 74.9 17.8 34 213-253 7-40 (542)
145 PF00625 Guanylate_kin: Guanyl 97.8 3.8E-05 8.2E-10 72.9 6.1 26 211-236 1-26 (183)
146 PLN02924 thymidylate kinase 97.8 0.00064 1.4E-08 67.2 15.0 92 208-307 12-109 (220)
147 PRK14529 adenylate kinase; Pro 97.8 0.00014 3E-09 72.3 10.0 24 215-238 3-26 (223)
148 PRK07933 thymidylate kinase; V 97.8 0.0023 5.1E-08 62.8 18.3 93 213-308 1-98 (213)
149 PLN02772 guanylate kinase 97.7 0.00036 7.9E-09 74.5 12.7 84 211-305 134-233 (398)
150 PRK09518 bifunctional cytidyla 97.7 0.00074 1.6E-08 77.5 15.3 35 214-255 3-37 (712)
151 KOG0635 Adenosine 5'-phosphosu 97.7 0.00032 6.9E-09 65.8 9.9 43 210-254 29-71 (207)
152 COG0283 Cmk Cytidylate kinase 97.6 0.0021 4.5E-08 63.5 15.9 34 212-252 4-37 (222)
153 PLN02842 nucleotide kinase 97.6 0.0012 2.6E-08 72.7 14.7 31 216-253 1-31 (505)
154 COG1428 Deoxynucleoside kinase 97.6 0.0028 6E-08 62.5 15.2 27 212-238 4-30 (216)
155 PLN02748 tRNA dimethylallyltra 97.5 0.00029 6.4E-09 76.9 8.6 88 210-308 20-122 (468)
156 COG0125 Tmk Thymidylate kinase 97.5 0.0065 1.4E-07 59.8 17.0 91 211-308 2-98 (208)
157 PF03668 ATP_bind_2: P-loop AT 97.5 0.0025 5.4E-08 65.4 14.3 62 367-434 77-141 (284)
158 PLN02199 shikimate kinase 97.4 0.0066 1.4E-07 62.9 17.1 36 212-254 102-137 (303)
159 PLN02840 tRNA dimethylallyltra 97.4 0.00047 1E-08 74.3 8.4 93 204-307 13-120 (421)
160 PLN02165 adenylate isopentenyl 97.4 0.00033 7.1E-09 73.4 6.7 38 209-253 40-77 (334)
161 TIGR01425 SRP54_euk signal rec 97.4 0.00071 1.5E-08 73.2 9.2 47 208-256 96-142 (429)
162 COG3896 Chloramphenicol 3-O-ph 97.3 0.0022 4.9E-08 60.7 11.2 127 208-393 19-161 (205)
163 PRK13976 thymidylate kinase; P 97.3 0.0079 1.7E-07 59.0 15.6 91 213-308 1-96 (209)
164 TIGR00064 ftsY signal recognit 97.3 0.0025 5.4E-08 65.0 12.1 46 209-256 69-114 (272)
165 cd03115 SRP The signal recogni 97.3 0.00081 1.8E-08 62.9 7.8 41 214-256 2-42 (173)
166 PRK10416 signal recognition pa 97.2 0.0023 4.9E-08 66.8 11.3 45 209-255 111-155 (318)
167 PF00004 AAA: ATPase family as 97.2 0.00031 6.7E-09 61.5 4.1 34 215-253 1-34 (132)
168 cd00071 GMPK Guanosine monopho 97.2 0.00016 3.4E-09 66.1 2.2 23 214-236 1-23 (137)
169 smart00382 AAA ATPases associa 97.2 0.00044 9.6E-09 59.2 4.5 43 212-256 2-44 (148)
170 PRK14974 cell division protein 97.2 0.0011 2.3E-08 69.7 8.1 46 209-256 137-182 (336)
171 cd01130 VirB11-like_ATPase Typ 97.2 0.0036 7.9E-08 59.7 11.1 132 211-402 24-157 (186)
172 cd02019 NK Nucleoside/nucleoti 97.1 0.00033 7.2E-09 56.5 2.9 23 214-236 1-23 (69)
173 COG1072 CoaA Panthothenate kin 97.1 0.009 1.9E-07 61.0 13.7 157 208-400 78-239 (283)
174 PRK10867 signal recognition pa 97.1 0.00071 1.5E-08 73.3 6.2 47 209-257 97-144 (433)
175 KOG0744 AAA+-type ATPase [Post 97.1 0.0017 3.7E-08 67.6 8.6 26 212-237 177-202 (423)
176 TIGR00959 ffh signal recogniti 97.1 0.0013 2.9E-08 71.2 8.3 47 209-256 96-142 (428)
177 TIGR00174 miaA tRNA isopenteny 97.1 0.001 2.2E-08 68.5 6.8 33 214-253 1-33 (287)
178 COG1936 Predicted nucleotide k 97.1 0.004 8.7E-08 59.6 9.9 24 214-238 2-25 (180)
179 KOG3062 RNA polymerase II elon 97.0 0.003 6.4E-08 62.9 8.4 84 214-310 3-86 (281)
180 PF13401 AAA_22: AAA domain; P 96.9 0.0015 3.2E-08 57.5 5.4 54 211-264 3-59 (131)
181 PF01745 IPT: Isopentenyl tran 96.9 0.012 2.7E-07 58.2 11.6 119 213-394 2-140 (233)
182 TIGR01618 phage_P_loop phage n 96.8 0.001 2.2E-08 66.0 4.0 35 209-252 9-43 (220)
183 COG0324 MiaA tRNA delta(2)-iso 96.8 0.003 6.6E-08 65.5 7.6 86 211-307 2-102 (308)
184 PF00448 SRP54: SRP54-type pro 96.8 0.0014 3.1E-08 63.6 4.7 42 212-255 1-42 (196)
185 PRK00771 signal recognition pa 96.8 0.0035 7.6E-08 68.1 7.7 45 210-256 93-137 (437)
186 PRK12724 flagellar biosynthesi 96.8 0.0074 1.6E-07 65.3 10.0 46 210-256 221-266 (432)
187 COG2019 AdkA Archaeal adenylat 96.7 0.037 7.9E-07 53.0 13.3 25 212-236 4-28 (189)
188 COG1126 GlnQ ABC-type polar am 96.7 0.0019 4E-08 64.1 4.5 47 204-253 20-66 (240)
189 COG3709 Uncharacterized compon 96.7 0.0059 1.3E-07 58.1 7.4 26 211-236 4-29 (192)
190 COG1120 FepC ABC-type cobalami 96.6 0.0025 5.3E-08 64.7 4.6 45 208-255 24-68 (258)
191 KOG3347 Predicted nucleotide k 96.6 0.0044 9.5E-08 58.2 5.8 36 210-253 6-41 (176)
192 PRK14729 miaA tRNA delta(2)-is 96.6 0.0062 1.4E-07 63.1 7.6 81 211-307 3-102 (300)
193 cd00009 AAA The AAA+ (ATPases 96.6 0.0039 8.4E-08 54.1 5.3 40 211-252 18-57 (151)
194 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0032 6.9E-08 57.8 4.8 28 211-238 21-48 (133)
195 TIGR00101 ureG urease accessor 96.5 0.0047 1E-07 60.1 6.2 44 212-258 1-44 (199)
196 PF08303 tRNA_lig_kinase: tRNA 96.5 0.04 8.7E-07 52.5 12.2 76 215-323 2-80 (168)
197 PF13521 AAA_28: AAA domain; P 96.5 0.0085 1.9E-07 55.5 7.6 23 215-238 2-24 (163)
198 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0021 4.4E-08 68.1 3.8 28 210-237 76-103 (361)
199 PRK09087 hypothetical protein; 96.5 0.011 2.4E-07 58.7 8.6 81 214-311 46-130 (226)
200 PLN00020 ribulose bisphosphate 96.5 0.0088 1.9E-07 63.8 8.2 41 208-253 144-184 (413)
201 KOG2134 Polynucleotide kinase 96.5 0.0071 1.5E-07 64.1 7.4 80 210-324 267-346 (422)
202 PRK04195 replication factor C 96.5 0.0038 8.2E-08 68.5 5.6 44 212-260 39-82 (482)
203 PRK05800 cobU adenosylcobinami 96.5 0.0039 8.5E-08 59.2 5.0 33 214-251 3-35 (170)
204 PLN02796 D-glycerate 3-kinase 96.4 0.0057 1.2E-07 64.5 6.5 53 210-264 98-150 (347)
205 PLN03046 D-glycerate 3-kinase; 96.4 0.0056 1.2E-07 66.2 6.5 53 209-263 209-261 (460)
206 PF00005 ABC_tran: ABC transpo 96.4 0.003 6.5E-08 56.3 3.7 43 210-255 9-51 (137)
207 PF13555 AAA_29: P-loop contai 96.4 0.0029 6.4E-08 50.7 3.0 23 214-236 25-47 (62)
208 TIGR03499 FlhF flagellar biosy 96.4 0.0044 9.6E-08 63.4 5.0 46 210-255 192-237 (282)
209 COG0396 sufC Cysteine desulfur 96.3 0.0052 1.1E-07 61.4 5.1 52 207-259 25-76 (251)
210 cd01131 PilT Pilus retraction 96.3 0.003 6.6E-08 61.0 3.4 24 214-237 3-26 (198)
211 PF06309 Torsin: Torsin; Inte 96.3 0.02 4.4E-07 52.2 8.5 31 208-238 49-79 (127)
212 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0047 1E-07 54.7 4.2 37 210-255 13-49 (107)
213 KOG0055 Multidrug/pheromone ex 96.3 0.04 8.7E-07 66.0 13.0 53 209-264 1013-1067(1228)
214 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0048 1.1E-07 59.4 4.6 44 208-254 23-66 (211)
215 COG1660 Predicted P-loop-conta 96.3 0.047 1E-06 55.5 11.5 59 370-434 81-142 (286)
216 cd01120 RecA-like_NTPases RecA 96.3 0.0045 9.8E-08 55.5 4.0 36 214-251 1-36 (165)
217 KOG1384 tRNA delta(2)-isopente 96.2 0.071 1.5E-06 55.8 13.0 139 211-393 6-159 (348)
218 PF05496 RuvB_N: Holliday junc 96.2 0.0082 1.8E-07 59.9 6.0 39 212-255 50-88 (233)
219 PRK08099 bifunctional DNA-bind 96.2 0.016 3.4E-07 62.4 8.5 30 208-237 215-244 (399)
220 PF13191 AAA_16: AAA ATPase do 96.2 0.0036 7.8E-08 58.1 3.2 30 208-237 20-49 (185)
221 TIGR01166 cbiO cobalt transpor 96.2 0.0051 1.1E-07 58.5 4.2 43 208-253 14-56 (190)
222 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0052 1.1E-07 60.3 4.4 45 208-255 22-66 (236)
223 PRK11889 flhF flagellar biosyn 96.2 0.0055 1.2E-07 65.9 4.9 43 210-254 239-281 (436)
224 cd03226 ABC_cobalt_CbiO_domain 96.2 0.005 1.1E-07 59.2 4.1 43 208-253 22-64 (205)
225 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0051 1.1E-07 59.6 4.2 44 208-254 26-69 (218)
226 cd03296 ABC_CysA_sulfate_impor 96.2 0.0055 1.2E-07 60.4 4.4 43 208-253 24-66 (239)
227 PRK05642 DNA replication initi 96.2 0.019 4.2E-07 57.0 8.3 41 213-255 46-86 (234)
228 PRK09435 membrane ATPase/prote 96.2 0.0052 1.1E-07 64.6 4.4 42 209-252 53-94 (332)
229 cd03259 ABC_Carb_Solutes_like 96.2 0.006 1.3E-07 58.9 4.5 44 208-254 22-65 (213)
230 cd01394 radB RadB. The archaea 96.1 0.0076 1.6E-07 58.5 5.2 41 210-252 17-57 (218)
231 COG0378 HypB Ni2+-binding GTPa 96.1 0.0076 1.6E-07 58.8 5.1 50 208-260 8-58 (202)
232 PRK10751 molybdopterin-guanine 96.1 0.0051 1.1E-07 58.9 3.9 28 210-237 4-31 (173)
233 cd03224 ABC_TM1139_LivF_branch 96.1 0.0065 1.4E-07 58.9 4.7 44 208-254 22-65 (222)
234 PRK13768 GTPase; Provisional 96.1 0.0067 1.5E-07 61.1 4.9 40 211-252 1-40 (253)
235 cd03263 ABC_subfamily_A The AB 96.1 0.0061 1.3E-07 59.1 4.4 43 208-253 24-66 (220)
236 TIGR02315 ABC_phnC phosphonate 96.1 0.0057 1.2E-07 60.2 4.3 44 208-254 24-67 (243)
237 PRK06995 flhF flagellar biosyn 96.1 0.1 2.2E-06 57.6 14.2 45 210-254 254-298 (484)
238 cd03269 ABC_putative_ATPase Th 96.1 0.0064 1.4E-07 58.6 4.4 42 208-252 22-63 (210)
239 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0059 1.3E-07 60.1 4.2 44 208-254 23-66 (236)
240 PHA02544 44 clamp loader, smal 96.1 0.0097 2.1E-07 60.9 5.9 39 209-252 40-78 (316)
241 cd03301 ABC_MalK_N The N-termi 96.1 0.0064 1.4E-07 58.7 4.3 43 208-253 22-64 (213)
242 TIGR02673 FtsE cell division A 96.1 0.0065 1.4E-07 58.7 4.4 44 208-254 24-67 (214)
243 cd03292 ABC_FtsE_transporter F 96.1 0.0062 1.4E-07 58.7 4.2 43 208-253 23-65 (214)
244 PF05729 NACHT: NACHT domain 96.1 0.0047 1E-07 55.9 3.1 24 213-236 1-24 (166)
245 PRK12723 flagellar biosynthesi 96.1 0.025 5.4E-07 60.7 9.1 47 210-256 172-220 (388)
246 PRK05201 hslU ATP-dependent pr 96.1 0.014 3.1E-07 63.1 7.2 40 211-255 49-88 (443)
247 cd03258 ABC_MetN_methionine_tr 96.1 0.0067 1.4E-07 59.5 4.4 44 208-254 27-70 (233)
248 cd03256 ABC_PhnC_transporter A 96.1 0.0068 1.5E-07 59.6 4.4 44 208-254 23-66 (241)
249 cd03257 ABC_NikE_OppD_transpor 96.1 0.0067 1.5E-07 59.0 4.4 44 208-254 27-70 (228)
250 PRK08084 DNA replication initi 96.0 0.067 1.5E-06 53.2 11.5 39 213-253 46-84 (235)
251 cd03261 ABC_Org_Solvent_Resist 96.0 0.0067 1.4E-07 59.6 4.3 44 208-254 22-65 (235)
252 cd03260 ABC_PstB_phosphate_tra 96.0 0.0074 1.6E-07 58.9 4.6 44 208-254 22-70 (227)
253 PRK12726 flagellar biosynthesi 96.0 0.039 8.5E-07 59.2 10.3 45 209-255 203-247 (407)
254 PRK13538 cytochrome c biogenes 96.0 0.0091 2E-07 57.5 5.1 44 208-254 23-66 (204)
255 PRK10584 putative ABC transpor 96.0 0.0075 1.6E-07 58.9 4.6 44 208-254 32-75 (228)
256 PRK13541 cytochrome c biogenes 96.0 0.008 1.7E-07 57.5 4.7 43 208-253 22-64 (195)
257 TIGR02211 LolD_lipo_ex lipopro 96.0 0.007 1.5E-07 58.8 4.3 43 208-253 27-69 (221)
258 PHA03132 thymidine kinase; Pro 96.0 0.33 7.1E-06 54.7 17.8 25 212-236 257-281 (580)
259 TIGR02237 recomb_radB DNA repa 96.0 0.0093 2E-07 57.4 5.1 41 210-252 10-50 (209)
260 cd03218 ABC_YhbG The ABC trans 96.0 0.0077 1.7E-07 58.9 4.6 44 208-254 22-65 (232)
261 PRK10247 putative ABC transpor 96.0 0.0084 1.8E-07 58.7 4.8 44 208-254 29-72 (225)
262 TIGR01277 thiQ thiamine ABC tr 96.0 0.0059 1.3E-07 59.2 3.7 44 208-254 20-63 (213)
263 cd03265 ABC_DrrA DrrA is the A 96.0 0.0075 1.6E-07 58.7 4.4 43 208-253 22-64 (220)
264 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0078 1.7E-07 59.5 4.6 44 208-254 23-66 (242)
265 cd03262 ABC_HisP_GlnQ_permease 96.0 0.0077 1.7E-07 58.0 4.4 43 208-253 22-64 (213)
266 KOG3877 NADH:ubiquinone oxidor 96.0 0.12 2.7E-06 53.1 13.0 29 210-238 69-97 (393)
267 cd03268 ABC_BcrA_bacitracin_re 96.0 0.0083 1.8E-07 57.8 4.6 44 208-254 22-65 (208)
268 PF07728 AAA_5: AAA domain (dy 96.0 0.01 2.2E-07 53.3 4.8 23 215-237 2-24 (139)
269 PF13245 AAA_19: Part of AAA d 96.0 0.0065 1.4E-07 50.3 3.3 25 212-236 10-34 (76)
270 TIGR00960 3a0501s02 Type II (G 96.0 0.0072 1.6E-07 58.5 4.2 43 208-253 25-67 (216)
271 PRK11629 lolD lipoprotein tran 96.0 0.0078 1.7E-07 59.2 4.4 44 208-254 31-74 (233)
272 COG4619 ABC-type uncharacteriz 96.0 0.011 2.4E-07 56.9 5.1 45 207-254 24-68 (223)
273 cd03246 ABCC_Protease_Secretio 96.0 0.009 1.9E-07 56.1 4.6 43 208-253 24-66 (173)
274 cd03264 ABC_drug_resistance_li 96.0 0.0082 1.8E-07 57.9 4.4 40 211-254 25-64 (211)
275 cd03214 ABC_Iron-Siderophores_ 95.9 0.0096 2.1E-07 56.3 4.7 44 208-254 21-64 (180)
276 TIGR03015 pepcterm_ATPase puta 95.9 0.0061 1.3E-07 60.6 3.5 28 210-237 41-68 (269)
277 COG0552 FtsY Signal recognitio 95.9 0.027 5.9E-07 59.0 8.3 46 209-256 136-181 (340)
278 cd03251 ABCC_MsbA MsbA is an e 95.9 0.0081 1.7E-07 58.8 4.3 44 208-254 24-67 (234)
279 cd03252 ABCC_Hemolysin The ABC 95.9 0.0081 1.8E-07 59.0 4.3 44 208-254 24-67 (237)
280 TIGR03410 urea_trans_UrtE urea 95.9 0.0089 1.9E-07 58.4 4.6 44 208-254 22-65 (230)
281 PRK14250 phosphate ABC transpo 95.9 0.008 1.7E-07 59.5 4.3 44 208-254 25-68 (241)
282 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0078 1.7E-07 58.5 4.1 41 208-251 26-66 (220)
283 cd03247 ABCC_cytochrome_bd The 95.9 0.0085 1.8E-07 56.5 4.2 42 208-252 24-65 (178)
284 cd03235 ABC_Metallic_Cations A 95.9 0.0081 1.8E-07 58.1 4.2 41 208-251 21-61 (213)
285 TIGR01189 ccmA heme ABC export 95.9 0.011 2.4E-07 56.6 5.0 44 208-254 22-65 (198)
286 PRK11300 livG leucine/isoleuci 95.9 0.0088 1.9E-07 59.4 4.5 45 208-255 27-71 (255)
287 cd03215 ABC_Carb_Monos_II This 95.9 0.0091 2E-07 56.6 4.4 45 208-255 22-66 (182)
288 cd03298 ABC_ThiQ_thiamine_tran 95.9 0.0079 1.7E-07 58.0 4.0 45 208-255 20-64 (211)
289 cd03229 ABC_Class3 This class 95.9 0.0092 2E-07 56.3 4.4 44 208-254 22-65 (178)
290 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0091 2E-07 56.1 4.3 43 208-253 22-64 (173)
291 PRK12269 bifunctional cytidyla 95.9 0.0099 2.2E-07 69.6 5.4 40 210-256 32-71 (863)
292 COG0541 Ffh Signal recognition 95.9 0.016 3.4E-07 62.6 6.5 97 208-309 96-194 (451)
293 cd03254 ABCC_Glucan_exporter_l 95.9 0.0087 1.9E-07 58.4 4.3 44 208-254 25-68 (229)
294 cd03238 ABC_UvrA The excision 95.9 0.0068 1.5E-07 57.9 3.4 27 208-234 17-43 (176)
295 cd03244 ABCC_MRP_domain2 Domai 95.9 0.0094 2E-07 57.9 4.4 43 208-253 26-68 (221)
296 COG4615 PvdE ABC-type sideroph 95.8 0.034 7.3E-07 59.6 8.7 49 202-253 339-387 (546)
297 cd01124 KaiC KaiC is a circadi 95.8 0.0091 2E-07 55.9 4.1 36 215-252 2-37 (187)
298 cd03216 ABC_Carb_Monos_I This 95.8 0.01 2.2E-07 55.4 4.4 44 208-254 22-65 (163)
299 COG1132 MdlB ABC-type multidru 95.8 0.033 7.1E-07 62.0 9.2 110 209-323 352-480 (567)
300 KOG1969 DNA replication checkp 95.8 0.012 2.6E-07 66.8 5.6 31 208-238 322-352 (877)
301 cd03234 ABCG_White The White s 95.8 0.01 2.2E-07 58.1 4.5 46 208-253 29-74 (226)
302 TIGR01184 ntrCD nitrate transp 95.8 0.01 2.2E-07 58.5 4.5 42 209-253 8-49 (230)
303 cd03253 ABCC_ATM1_transporter 95.8 0.012 2.5E-07 57.8 4.9 44 208-254 23-66 (236)
304 PRK11264 putative amino-acid A 95.8 0.0099 2.1E-07 58.9 4.4 43 208-253 25-67 (250)
305 PRK13540 cytochrome c biogenes 95.8 0.011 2.5E-07 56.7 4.7 44 208-254 23-66 (200)
306 cd03266 ABC_NatA_sodium_export 95.8 0.01 2.2E-07 57.5 4.4 43 208-253 27-69 (218)
307 TIGR03608 L_ocin_972_ABC putat 95.8 0.01 2.2E-07 56.8 4.4 42 208-252 20-61 (206)
308 cd03228 ABCC_MRP_Like The MRP 95.8 0.011 2.4E-07 55.4 4.4 43 208-253 24-66 (171)
309 cd03248 ABCC_TAP TAP, the Tran 95.8 0.011 2.4E-07 57.7 4.5 43 208-253 36-78 (226)
310 PRK09493 glnQ glutamine ABC tr 95.8 0.01 2.2E-07 58.6 4.3 44 208-254 23-66 (240)
311 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.011 2.4E-07 59.9 4.6 42 208-252 26-67 (254)
312 PRK10771 thiQ thiamine transpo 95.8 0.011 2.4E-07 58.1 4.5 44 208-254 21-64 (232)
313 PRK10895 lipopolysaccharide AB 95.8 0.011 2.5E-07 58.2 4.6 44 208-254 25-68 (241)
314 PF13189 Cytidylate_kin2: Cyti 95.8 0.063 1.4E-06 51.1 9.5 33 214-253 1-33 (179)
315 PF03029 ATP_bind_1: Conserved 95.8 0.0088 1.9E-07 59.9 3.8 34 217-252 1-34 (238)
316 PRK10575 iron-hydroxamate tran 95.8 0.0091 2E-07 60.0 4.0 43 208-253 33-75 (265)
317 PF00308 Bac_DnaA: Bacterial d 95.8 0.065 1.4E-06 52.8 9.9 40 215-254 37-76 (219)
318 PRK10908 cell division protein 95.8 0.011 2.3E-07 57.7 4.3 43 208-253 24-66 (222)
319 PF13173 AAA_14: AAA domain 95.8 0.01 2.2E-07 53.0 3.9 39 213-254 3-41 (128)
320 cd03245 ABCC_bacteriocin_expor 95.7 0.011 2.3E-07 57.4 4.3 43 208-253 26-68 (220)
321 PF13476 AAA_23: AAA domain; P 95.7 0.0087 1.9E-07 56.0 3.5 27 211-237 18-44 (202)
322 cd03297 ABC_ModC_molybdenum_tr 95.7 0.011 2.5E-07 57.1 4.4 42 208-253 20-61 (214)
323 COG1855 ATPase (PilT family) [ 95.7 0.0066 1.4E-07 65.6 3.0 25 212-236 263-287 (604)
324 cd03223 ABCD_peroxisomal_ALDP 95.7 0.012 2.6E-07 55.2 4.3 39 208-249 23-61 (166)
325 cd01918 HprK_C HprK/P, the bif 95.7 0.011 2.4E-07 55.3 4.1 24 212-235 14-37 (149)
326 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.7 0.012 2.5E-07 58.0 4.4 43 208-253 25-67 (238)
327 PRK11248 tauB taurine transpor 95.7 0.011 2.4E-07 59.2 4.4 42 208-252 23-64 (255)
328 PRK11701 phnK phosphonate C-P 95.7 0.012 2.6E-07 58.8 4.5 42 208-252 28-69 (258)
329 PF03308 ArgK: ArgK protein; 95.7 0.0092 2E-07 60.6 3.7 115 210-335 27-155 (266)
330 PF02367 UPF0079: Uncharacteri 95.7 0.011 2.5E-07 53.5 3.9 29 210-238 13-41 (123)
331 PRK13638 cbiO cobalt transport 95.7 0.011 2.3E-07 59.7 4.1 43 208-253 23-65 (271)
332 COG4778 PhnL ABC-type phosphon 95.7 0.014 3.1E-07 56.2 4.6 38 208-248 33-70 (235)
333 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.0098 2.1E-07 57.6 3.7 43 210-254 36-78 (226)
334 PRK11124 artP arginine transpo 95.7 0.012 2.6E-07 58.1 4.3 43 208-253 24-66 (242)
335 TIGR00635 ruvB Holliday juncti 95.7 0.018 4E-07 58.6 5.8 28 210-237 28-55 (305)
336 PRK14723 flhF flagellar biosyn 95.7 0.21 4.5E-06 57.9 14.8 44 211-254 184-227 (767)
337 PRK13548 hmuV hemin importer A 95.7 0.011 2.5E-07 59.1 4.2 44 208-254 24-67 (258)
338 TIGR02881 spore_V_K stage V sp 95.6 0.01 2.2E-07 59.7 3.8 26 211-236 41-66 (261)
339 COG3839 MalK ABC-type sugar tr 95.6 0.0098 2.1E-07 62.6 3.8 50 208-260 25-74 (338)
340 PRK14722 flhF flagellar biosyn 95.6 0.014 2.9E-07 62.4 4.9 47 210-256 135-181 (374)
341 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.012 2.7E-07 59.3 4.4 44 208-254 46-89 (269)
342 TIGR03771 anch_rpt_ABC anchore 95.6 0.014 3E-07 57.2 4.6 41 210-253 4-44 (223)
343 cd03290 ABCC_SUR1_N The SUR do 95.6 0.014 3E-07 56.7 4.6 43 208-253 23-65 (218)
344 COG2884 FtsE Predicted ATPase 95.6 0.017 3.6E-07 56.5 5.0 43 208-253 24-66 (223)
345 KOG3078 Adenylate kinase [Nucl 95.6 0.037 7.9E-07 55.5 7.5 43 211-265 14-56 (235)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.012 2.7E-07 53.9 3.9 39 208-249 22-60 (144)
347 PRK15177 Vi polysaccharide exp 95.6 0.0096 2.1E-07 58.1 3.4 29 208-236 9-37 (213)
348 cd03300 ABC_PotA_N PotA is an 95.6 0.012 2.7E-07 57.8 4.1 44 208-254 22-65 (232)
349 TIGR03005 ectoine_ehuA ectoine 95.6 0.013 2.7E-07 58.4 4.2 43 208-253 22-64 (252)
350 PF06745 KaiC: KaiC; InterPro 95.6 0.03 6.6E-07 54.6 6.8 41 210-252 17-58 (226)
351 PRK04296 thymidine kinase; Pro 95.6 0.015 3.2E-07 56.0 4.5 37 212-250 2-38 (190)
352 PRK13539 cytochrome c biogenes 95.6 0.014 3.1E-07 56.4 4.5 43 208-253 24-66 (207)
353 TIGR00750 lao LAO/AO transport 95.6 0.015 3.2E-07 60.0 4.7 44 208-253 30-73 (300)
354 PRK13547 hmuV hemin importer A 95.6 0.016 3.5E-07 58.8 5.0 47 208-254 23-74 (272)
355 TIGR02324 CP_lyasePhnL phospho 95.6 0.015 3.2E-07 56.7 4.5 40 208-250 30-69 (224)
356 cd03222 ABC_RNaseL_inhibitor T 95.6 0.014 3E-07 55.9 4.2 39 209-250 22-60 (177)
357 TIGR03411 urea_trans_UrtD urea 95.6 0.015 3.3E-07 57.2 4.7 44 208-254 24-67 (242)
358 TIGR00968 3a0106s01 sulfate AB 95.6 0.012 2.6E-07 58.1 3.9 43 209-254 23-65 (237)
359 COG3840 ThiQ ABC-type thiamine 95.6 0.012 2.6E-07 57.2 3.7 48 209-259 22-69 (231)
360 PRK11831 putative ABC transpor 95.6 0.013 2.8E-07 59.1 4.2 43 208-253 29-71 (269)
361 TIGR02323 CP_lyasePhnK phospho 95.5 0.014 3.1E-07 57.9 4.4 41 208-251 25-65 (253)
362 PRK15056 manganese/iron transp 95.5 0.013 2.7E-07 59.3 4.0 42 208-252 29-70 (272)
363 KOG0780 Signal recognition par 95.5 0.027 5.8E-07 60.1 6.5 106 208-319 97-205 (483)
364 TIGR00073 hypB hydrogenase acc 95.5 0.025 5.4E-07 54.9 5.9 48 208-258 18-65 (207)
365 PRK11614 livF leucine/isoleuci 95.5 0.015 3.2E-07 57.2 4.5 44 208-254 27-70 (237)
366 PHA00729 NTP-binding motif con 95.5 0.01 2.2E-07 59.3 3.2 25 212-236 17-41 (226)
367 cd03250 ABCC_MRP_domain1 Domai 95.5 0.015 3.2E-07 55.9 4.3 39 208-249 27-65 (204)
368 PRK11247 ssuB aliphatic sulfon 95.5 0.013 2.9E-07 59.0 4.1 40 208-250 34-73 (257)
369 PRK00080 ruvB Holliday junctio 95.5 0.022 4.8E-07 59.2 5.8 28 211-238 50-77 (328)
370 PRK03992 proteasome-activating 95.5 0.012 2.5E-07 63.0 3.9 28 210-237 163-190 (389)
371 PRK13632 cbiO cobalt transport 95.5 0.015 3.2E-07 58.8 4.4 44 208-254 31-74 (271)
372 COG1136 SalX ABC-type antimicr 95.5 0.018 3.8E-07 57.5 4.8 44 207-253 26-69 (226)
373 PRK09361 radB DNA repair and r 95.5 0.019 4.2E-07 56.0 5.0 40 210-251 21-60 (225)
374 TIGR03740 galliderm_ABC gallid 95.5 0.015 3.3E-07 56.6 4.3 41 208-251 22-62 (223)
375 cd03233 ABC_PDR_domain1 The pl 95.5 0.015 3.2E-07 56.2 4.1 47 208-254 29-75 (202)
376 TIGR00390 hslU ATP-dependent p 95.5 0.014 2.9E-07 63.3 4.2 29 210-238 45-73 (441)
377 PRK12402 replication factor C 95.5 0.017 3.6E-07 59.3 4.8 40 214-253 38-77 (337)
378 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.017 3.6E-07 55.7 4.5 43 208-253 30-72 (207)
379 PLN03025 replication factor C 95.5 0.02 4.4E-07 59.3 5.4 26 210-236 33-58 (319)
380 PRK10419 nikE nickel transport 95.5 0.016 3.5E-07 58.5 4.5 44 208-254 34-77 (268)
381 PTZ00202 tuzin; Provisional 95.5 0.075 1.6E-06 58.1 9.7 38 209-251 283-320 (550)
382 cd03283 ABC_MutS-like MutS-lik 95.5 0.012 2.6E-07 57.2 3.4 24 212-235 25-48 (199)
383 PF03215 Rad17: Rad17 cell cyc 95.5 0.011 2.4E-07 65.7 3.6 29 210-238 43-71 (519)
384 cd03231 ABC_CcmA_heme_exporter 95.5 0.02 4.4E-07 55.1 5.0 43 208-253 22-64 (201)
385 TIGR02868 CydC thiol reductant 95.5 0.013 2.8E-07 64.6 4.1 44 208-254 357-400 (529)
386 PRK15112 antimicrobial peptide 95.4 0.016 3.5E-07 58.4 4.4 43 208-253 35-77 (267)
387 cd03243 ABC_MutS_homologs The 95.4 0.012 2.7E-07 56.7 3.4 25 210-234 27-51 (202)
388 COG1116 TauB ABC-type nitrate/ 95.4 0.018 4E-07 58.0 4.7 49 202-253 19-67 (248)
389 PRK13648 cbiO cobalt transport 95.4 0.016 3.4E-07 58.4 4.4 43 208-253 31-73 (269)
390 TIGR02928 orc1/cdc6 family rep 95.4 0.022 4.7E-07 59.4 5.5 48 209-256 37-88 (365)
391 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.4 0.015 3.3E-07 57.0 4.1 40 208-250 44-83 (224)
392 TIGR00972 3a0107s01c2 phosphat 95.4 0.016 3.5E-07 57.4 4.3 47 208-254 23-71 (247)
393 PRK14721 flhF flagellar biosyn 95.4 0.097 2.1E-06 56.8 10.4 45 210-254 189-233 (420)
394 cd03267 ABC_NatA_like Similar 95.4 0.017 3.6E-07 57.2 4.3 41 208-251 43-83 (236)
395 PRK13649 cbiO cobalt transport 95.4 0.015 3.3E-07 58.8 4.1 43 208-253 29-71 (280)
396 KOG0733 Nuclear AAA ATPase (VC 95.4 0.038 8.2E-07 61.9 7.4 40 209-253 220-259 (802)
397 cd00544 CobU Adenosylcobinamid 95.4 0.015 3.3E-07 55.2 3.9 33 214-251 1-33 (169)
398 PRK13635 cbiO cobalt transport 95.4 0.016 3.6E-07 58.9 4.3 44 208-254 29-72 (279)
399 cd03213 ABCG_EPDR ABCG transpo 95.4 0.018 3.8E-07 55.3 4.3 44 208-254 31-76 (194)
400 PRK11034 clpA ATP-dependent Cl 95.4 0.036 7.8E-07 64.3 7.5 52 209-266 484-536 (758)
401 cd03272 ABC_SMC3_euk Eukaryoti 95.4 0.011 2.4E-07 58.2 2.9 23 211-233 22-44 (243)
402 TIGR01188 drrA daunorubicin re 95.4 0.017 3.7E-07 59.4 4.4 44 208-254 15-58 (302)
403 PF13086 AAA_11: AAA domain; P 95.4 0.015 3.3E-07 55.4 3.7 25 212-236 17-41 (236)
404 TIGR01978 sufC FeS assembly AT 95.4 0.013 2.8E-07 57.6 3.4 44 208-254 22-67 (243)
405 CHL00195 ycf46 Ycf46; Provisio 95.4 0.016 3.5E-07 64.0 4.4 29 210-238 257-285 (489)
406 PRK10646 ADP-binding protein; 95.4 0.023 4.9E-07 53.5 4.8 27 212-238 28-54 (153)
407 PRK10619 histidine/lysine/argi 95.3 0.017 3.8E-07 57.6 4.2 43 208-253 27-69 (257)
408 PRK11231 fecE iron-dicitrate t 95.3 0.017 3.6E-07 57.7 4.1 43 208-253 24-66 (255)
409 PF03266 NTPase_1: NTPase; In 95.3 0.013 2.8E-07 55.7 3.1 22 215-236 2-23 (168)
410 TIGR01650 PD_CobS cobaltochela 95.3 0.016 3.4E-07 60.8 4.1 31 215-250 67-97 (327)
411 TIGR02770 nickel_nikD nickel i 95.3 0.013 2.9E-07 57.5 3.3 47 208-254 8-55 (230)
412 TIGR02640 gas_vesic_GvpN gas v 95.3 0.019 4.1E-07 58.0 4.5 32 215-251 24-55 (262)
413 TIGR01288 nodI ATP-binding ABC 95.3 0.023 4.9E-07 58.5 5.2 43 208-253 26-68 (303)
414 cd03232 ABC_PDR_domain2 The pl 95.3 0.014 2.9E-07 55.9 3.3 45 208-253 29-73 (192)
415 COG4240 Predicted kinase [Gene 95.3 0.051 1.1E-06 54.5 7.3 57 208-265 46-102 (300)
416 PRK13543 cytochrome c biogenes 95.3 0.019 4E-07 55.9 4.2 43 208-253 33-75 (214)
417 PRK14242 phosphate transporter 95.3 0.013 2.9E-07 58.2 3.3 46 208-253 28-75 (253)
418 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.021 4.6E-07 52.5 4.3 42 209-253 22-63 (157)
419 TIGR01186 proV glycine betaine 95.3 0.018 3.8E-07 61.3 4.3 47 208-257 15-61 (363)
420 PRK13637 cbiO cobalt transport 95.3 0.018 4E-07 58.8 4.3 44 208-254 29-72 (287)
421 PRK13645 cbiO cobalt transport 95.3 0.017 3.8E-07 58.8 4.1 43 208-253 33-75 (289)
422 PRK08903 DnaA regulatory inact 95.3 0.019 4.1E-07 56.1 4.2 40 212-253 42-81 (227)
423 cd03217 ABC_FeS_Assembly ABC-t 95.3 0.022 4.8E-07 54.8 4.6 45 208-255 22-68 (200)
424 COG1618 Predicted nucleotide k 95.3 0.018 3.8E-07 54.9 3.7 26 211-236 4-29 (179)
425 PRK13633 cobalt transporter AT 95.3 0.019 4.1E-07 58.3 4.3 44 208-254 32-75 (280)
426 TIGR03873 F420-0_ABC_ATP propo 95.3 0.019 4.2E-07 57.3 4.3 44 208-254 23-66 (256)
427 PRK13644 cbiO cobalt transport 95.3 0.02 4.3E-07 58.1 4.4 44 208-254 24-67 (274)
428 PRK10253 iron-enterobactin tra 95.3 0.018 3.8E-07 58.0 4.0 43 208-253 29-71 (265)
429 cd02034 CooC The accessory pro 95.2 0.023 5E-07 50.7 4.3 36 215-252 2-37 (116)
430 COG1125 OpuBA ABC-type proline 95.2 0.033 7.2E-07 56.7 5.8 49 208-259 23-71 (309)
431 KOG1532 GTPase XAB1, interacts 95.2 0.076 1.6E-06 54.6 8.3 96 208-306 15-124 (366)
432 PF08477 Miro: Miro-like prote 95.2 0.016 3.5E-07 50.0 3.1 22 215-236 2-23 (119)
433 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.015 3.2E-07 61.8 3.4 25 212-236 134-158 (358)
434 PRK10463 hydrogenase nickel in 95.2 0.032 7E-07 57.6 5.8 48 209-259 101-148 (290)
435 COG3911 Predicted ATPase [Gene 95.2 0.019 4.2E-07 54.0 3.7 26 211-236 8-33 (183)
436 PRK13652 cbiO cobalt transport 95.2 0.021 4.6E-07 57.9 4.4 44 208-254 26-69 (277)
437 cd03299 ABC_ModC_like Archeal 95.2 0.02 4.4E-07 56.4 4.1 43 209-254 22-64 (235)
438 cd01123 Rad51_DMC1_radA Rad51_ 95.2 0.031 6.8E-07 54.6 5.4 43 210-252 17-63 (235)
439 COG4559 ABC-type hemin transpo 95.2 0.022 4.9E-07 56.5 4.3 38 210-250 25-62 (259)
440 PF13479 AAA_24: AAA domain 95.2 0.016 3.6E-07 56.6 3.5 32 211-252 2-33 (213)
441 COG0470 HolB ATPase involved i 95.2 0.03 6.4E-07 56.9 5.5 48 210-257 22-88 (325)
442 PTZ00361 26 proteosome regulat 95.2 0.023 4.9E-07 61.9 4.9 28 210-237 215-242 (438)
443 TIGR02769 nickel_nikE nickel i 95.2 0.021 4.5E-07 57.4 4.3 44 208-254 33-76 (265)
444 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.022 4.7E-07 57.1 4.3 38 210-250 23-60 (246)
445 PRK09544 znuC high-affinity zi 95.2 0.021 4.5E-07 57.3 4.2 29 208-236 26-54 (251)
446 PTZ00454 26S protease regulato 95.2 0.023 4.9E-07 61.2 4.7 28 210-237 177-204 (398)
447 PRK14247 phosphate ABC transpo 95.2 0.017 3.6E-07 57.4 3.4 47 208-254 25-73 (250)
448 PRK13650 cbiO cobalt transport 95.2 0.023 4.9E-07 57.8 4.4 44 208-254 29-72 (279)
449 PRK10851 sulfate/thiosulfate t 95.2 0.018 4E-07 60.8 3.9 45 208-255 24-68 (353)
450 PRK00411 cdc6 cell division co 95.1 0.032 6.9E-07 58.9 5.7 46 210-255 53-98 (394)
451 PRK11432 fbpC ferric transport 95.1 0.018 4E-07 60.8 3.9 46 208-256 28-73 (351)
452 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.019 4.1E-07 55.4 3.7 24 210-233 25-49 (200)
453 PRK14490 putative bifunctional 95.1 0.018 3.8E-07 61.1 3.8 28 210-237 3-30 (369)
454 PRK13900 type IV secretion sys 95.1 0.2 4.3E-06 52.7 11.5 133 211-404 159-294 (332)
455 cd03273 ABC_SMC2_euk Eukaryoti 95.1 0.016 3.5E-07 57.7 3.3 27 211-237 24-50 (251)
456 COG1703 ArgK Putative periplas 95.1 0.017 3.8E-07 59.7 3.4 119 208-335 47-177 (323)
457 PRK11153 metN DL-methionine tr 95.1 0.022 4.7E-07 59.9 4.3 44 208-254 27-70 (343)
458 TIGR01242 26Sp45 26S proteasom 95.1 0.018 3.9E-07 60.7 3.7 28 210-237 154-181 (364)
459 PRK13546 teichoic acids export 95.1 0.022 4.7E-07 57.7 4.1 40 208-250 46-85 (264)
460 PF00437 T2SE: Type II/IV secr 95.1 0.019 4.1E-07 57.7 3.6 26 212-237 127-152 (270)
461 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.026 5.7E-07 57.0 4.7 40 210-251 34-73 (259)
462 PRK10418 nikD nickel transport 95.1 0.024 5.2E-07 56.6 4.3 46 208-253 25-71 (254)
463 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.021 4.7E-07 56.0 3.9 24 210-233 27-50 (213)
464 cd03278 ABC_SMC_barmotin Barmo 95.1 0.019 4.1E-07 55.6 3.5 26 210-236 21-46 (197)
465 PRK13639 cbiO cobalt transport 95.1 0.022 4.8E-07 57.7 4.1 43 208-253 24-66 (275)
466 PRK13643 cbiO cobalt transport 95.1 0.023 4.9E-07 58.1 4.2 43 208-253 28-70 (288)
467 PRK14241 phosphate transporter 95.1 0.018 3.9E-07 57.6 3.4 46 208-253 26-73 (258)
468 COG1131 CcmA ABC-type multidru 95.1 0.031 6.7E-07 57.6 5.2 40 208-250 27-66 (293)
469 TIGR01241 FtsH_fam ATP-depende 95.1 0.017 3.6E-07 63.7 3.4 38 210-252 86-123 (495)
470 PRK10744 pstB phosphate transp 95.1 0.018 3.8E-07 57.7 3.3 46 208-253 35-82 (260)
471 cd03288 ABCC_SUR2 The SUR doma 95.1 0.025 5.4E-07 56.6 4.4 44 208-254 43-86 (257)
472 PRK14255 phosphate ABC transpo 95.1 0.018 3.9E-07 57.2 3.4 28 208-235 27-54 (252)
473 CHL00181 cbbX CbbX; Provisiona 95.1 0.021 4.5E-07 58.8 3.9 25 212-236 59-83 (287)
474 PRK14262 phosphate ABC transpo 95.1 0.018 4E-07 57.1 3.4 46 208-253 25-72 (250)
475 cd03291 ABCC_CFTR1 The CFTR su 95.0 0.025 5.4E-07 57.9 4.4 30 208-237 59-88 (282)
476 PRK11176 lipid transporter ATP 95.0 0.025 5.5E-07 63.0 4.7 43 210-255 367-409 (582)
477 PRK13647 cbiO cobalt transport 95.0 0.026 5.5E-07 57.3 4.4 44 208-254 27-70 (274)
478 COG0467 RAD55 RecA-superfamily 95.0 0.074 1.6E-06 53.3 7.7 41 210-252 21-61 (260)
479 COG3638 ABC-type phosphate/pho 95.0 0.029 6.2E-07 56.4 4.5 44 208-254 26-69 (258)
480 COG1127 Ttg2A ABC-type transpo 95.0 0.031 6.6E-07 56.4 4.7 45 208-255 30-74 (263)
481 PRK14251 phosphate ABC transpo 95.0 0.02 4.3E-07 56.9 3.4 46 208-253 26-73 (251)
482 PRK13640 cbiO cobalt transport 95.0 0.027 5.7E-07 57.4 4.4 47 208-254 29-75 (282)
483 PRK11000 maltose/maltodextrin 95.0 0.021 4.7E-07 60.6 3.8 44 208-254 25-68 (369)
484 PRK14244 phosphate ABC transpo 95.0 0.02 4.3E-07 56.9 3.4 46 208-253 27-74 (251)
485 PRK14240 phosphate transporter 95.0 0.02 4.4E-07 56.8 3.4 46 208-253 25-72 (250)
486 PRK09984 phosphonate/organopho 94.9 0.02 4.4E-07 57.3 3.4 46 208-253 26-71 (262)
487 PRK05703 flhF flagellar biosyn 94.9 0.028 6E-07 61.0 4.6 44 212-255 221-264 (424)
488 PRK14274 phosphate ABC transpo 94.9 0.02 4.4E-07 57.2 3.3 46 208-253 34-81 (259)
489 cd03114 ArgK-like The function 94.9 0.024 5.2E-07 52.6 3.6 36 215-252 2-37 (148)
490 KOG0234 Fructose-6-phosphate 2 94.9 0.6 1.3E-05 50.7 14.6 105 208-321 24-135 (438)
491 PRK14248 phosphate ABC transpo 94.9 0.02 4.4E-07 57.5 3.4 46 208-253 43-90 (268)
492 PRK13646 cbiO cobalt transport 94.9 0.027 5.9E-07 57.4 4.3 43 208-253 29-71 (286)
493 PHA02575 1 deoxynucleoside mon 94.9 0.036 7.7E-07 55.3 5.0 23 214-236 2-24 (227)
494 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.034 7.3E-07 55.2 4.9 41 210-252 19-59 (237)
495 PRK14239 phosphate transporter 94.9 0.021 4.5E-07 56.7 3.4 46 208-253 27-74 (252)
496 PRK09580 sufC cysteine desulfu 94.9 0.019 4.1E-07 56.7 3.1 45 208-255 23-69 (248)
497 TIGR00176 mobB molybdopterin-g 94.9 0.019 4.1E-07 53.7 2.9 23 214-236 1-23 (155)
498 PRK14261 phosphate ABC transpo 94.9 0.021 4.5E-07 56.8 3.4 28 208-235 28-55 (253)
499 PF00910 RNA_helicase: RNA hel 94.9 0.018 4E-07 50.2 2.6 23 215-237 1-23 (107)
500 PRK14963 DNA polymerase III su 94.9 0.045 9.8E-07 60.7 6.3 30 208-237 32-61 (504)
No 1
>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=5.8e-33 Score=276.71 Aligned_cols=150 Identities=10% Similarity=0.170 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHhhh-ccCCCCCCChhhHHHHHHhhHHhhhhhchhhhhhcccccccchHH-HHHHHHHHHHhc------
Q 010176 22 GAFAAAASHYRRQKY-KYHMGNQDIAPLLDRTESGRVGNLERFSHYVARQMGFDDTNECPQ-LCKLAYEYLKKS------ 93 (516)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~i~~~~~~n~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~R------ 93 (516)
..+|..-+.|-++.. +.-+..+|.++.+..++.+||.+++++.+.+.+..+++.++.+++ +++.+.++|++|
T Consensus 130 ~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~t~~f~e~~~~lf~~R~~~g~I 209 (337)
T COG2187 130 DALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFDRRIAEGFI 209 (337)
T ss_pred HHHHHHHHHHhhcCCCCccccccCCHHHHHhHHHhhHHHHhhhcCcccCHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCc
Confidence 344444455544432 223668999999999999999999999999999999999999999 999999999999
Q ss_pred cCCccccc----ccccCCccccccccccchhhhhhh--hcccccccccccchhcccccccccCCchhHHHHHHHHHhh--
Q 010176 94 KGCEDNIY----EYFSKEAEPESLYVKLVEEFDRCI--LSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQ-- 165 (516)
Q Consensus 94 r~cHGDLh----~~~~~~~~~fD~cIEF~~~l~R~i--l~d~AF~~~~~~~~~~l~MDle~~g~~~la~~~l~~yl~~-- 165 (516)
|+|||||| |+++|+|.+|| ||||||.| |+| ++|+|| |+||||++|+++||+.|||.|+++
T Consensus 210 RecHGDLhl~ni~l~dg~~~LFD-CIEFNd~f-r~iDv~~D~AF----------l~MDLe~~gr~dla~~~ln~Yl~~tg 277 (337)
T COG2187 210 RECHGDLHLRNICLWDGEPALFD-CIEFNDPF-RFIDVLYDLAF----------LAMDLEFRGRKDLARRFLNTYLEETG 277 (337)
T ss_pred eecccchhhcceeeecCcceEEE-EeecCCcc-hHHHHHHHHHH----------HHhhHhhcCChHHHHHHHHHHHHHhC
Confidence 99999999 99999999999 99999999 999 999999 999999999999999999999999
Q ss_pred ---h-----HH---HHHHHhHHHHHh-ccc
Q 010176 166 ---R-----FE---KVTKDLKMKRVF-STL 183 (516)
Q Consensus 166 ---~-----~~---RA~vRaKV~~~~-~~~ 183 (516)
+ |+ ||+|||||+++. +++
T Consensus 278 D~~gl~lLpfyla~rA~VRakV~sf~ldd~ 307 (337)
T COG2187 278 DWDGLELLPFYLAYRAYVRAKVTSFLLDDP 307 (337)
T ss_pred CccHHHHhHHHHHHHHHHHHheeEEeccCC
Confidence 2 33 999999999998 443
No 2
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.94 E-value=2.9e-26 Score=212.27 Aligned_cols=172 Identities=23% Similarity=0.232 Sum_probs=139.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|++.+|+|+|||||||+...+...+. ++.++||+|++. +++++... .. . .-.+.+.+..+
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA------~~i~p~~p-~~------~-~i~A~r~ai~~ 61 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIA------AQISPDNP-TS------A-AIQAARVAIDR 61 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHh------hhcCCCCc-hH------H-HHHHHHHHHHH
Confidence 589999999999999999988877763 478999666654 44655321 11 1 11234456668
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
+..+++.|.+|++|+||+.+++++.+. . ++.+|
T Consensus 62 i~~~I~~~~~F~~ETtLS~~s~~~~ik----------------------------------~-------------Ak~~G 94 (187)
T COG4185 62 IARLIDLGRPFIAETTLSGPSILELIK----------------------------------T-------------AKAAG 94 (187)
T ss_pred HHHHHHcCCCcceEEeeccchHHHHHH----------------------------------H-------------HHhCC
Confidence 999999999999999999998776532 1 36789
Q ss_pred ceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCCCCCCCeeEEEecCCCc
Q 010176 371 YRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSN 449 (516)
Q Consensus 371 y~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~~~~~p~li~~k~~~~~ 449 (516)
|.|.|.|+. .++|++++|+..|+..|||+||+++++++|.|.++++.+|..+||++.+|||++. . |+|++++.++..
T Consensus 95 f~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~-~-~~lv~e~~~~~i 172 (187)
T COG4185 95 FYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRL-A-PRLVAEFSGGGI 172 (187)
T ss_pred eEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCC-C-ceEEEEeCCceE
Confidence 999998886 5799999999999999999999999999999999999999999999999997754 3 999999987654
Q ss_pred e
Q 010176 450 L 450 (516)
Q Consensus 450 ~ 450 (516)
.
T Consensus 173 ~ 173 (187)
T COG4185 173 I 173 (187)
T ss_pred E
Confidence 3
No 3
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.92 E-value=1.8e-24 Score=208.02 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=124.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a 287 (516)
+...|++++++|+|||||||++..+.+.+. .++.++||+|+|+...+.+.++... .+...+..++..+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA 82 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence 668999999999999999999999999872 2478999999999988776665442 11123455577778888
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~ 367 (516)
..++..++++|++||+|+||++++....+++. ++
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~----------------------------------------------~k 116 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIRE----------------------------------------------AK 116 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHH----------------------------------------------HH
Confidence 89999999999999999999998766654333 25
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhhc------CcccchhhhHhHHHHHHHhHHHhhc--cCceEEEEecCC
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIRRAIMM------KRAVRVNSQLKSHKRFANAFRNYCE--LVDNARLYCTNA 433 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~R~~~g------Gr~Vp~~~ql~s~~rf~~~~~~y~~--lvD~~~lydnn~ 433 (516)
++||+|+|++|.+|+++++.|+..|+.++ ||.||.+.+..+|..+.+++..... ++|++.+||++.
T Consensus 117 ~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~~~~~~~~~~~~~~~~d~i~v~d~~g 190 (199)
T PF06414_consen 117 AAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYANLPETLEALENEKLFDRITVYDRDG 190 (199)
T ss_dssp CTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHHHHHHHHHHHHHCT--SEEEEE-TTS
T ss_pred cCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 67999999999999999999999999999 9999999999999999999988766 999999999764
No 4
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.67 E-value=9.1e-16 Score=138.01 Aligned_cols=138 Identities=23% Similarity=0.230 Sum_probs=97.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
||+|+|+|||||||+++.|++.+ ++.+| +.|.++..+.+..... .....+. .......+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-------~~~~i------~~D~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-------GAVVI------SQDEIRRRLAGEDPPS-PSDYIEA-EERAYQILNAAIRK 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-------TEEEE------EHHHHHHHHCCSSSGC-CCCCHHH-HHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-------CCEEE------eHHHHHHHHccccccc-chhHHHH-HHHHHHHHHHHHHH
Confidence 68999999999999999999888 35899 5555666676642111 1111112 33445555678899
Q ss_pred HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 373 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I 373 (516)
.+..|.++|+|.|+..++.|+.+.++++. .||.+
T Consensus 66 ~l~~g~~~vvd~~~~~~~~r~~~~~~~~~----------------------------------------------~~~~~ 99 (143)
T PF13671_consen 66 ALRNGNSVVVDNTNLSREERARLRELARK----------------------------------------------HGYPV 99 (143)
T ss_dssp HHHTT-EEEEESS--SHHHHHHHHHHHHH----------------------------------------------CTEEE
T ss_pred HHHcCCCceeccCcCCHHHHHHHHHHHHH----------------------------------------------cCCeE
Confidence 99999999999999999988887777543 36778
Q ss_pred EEEEEecCHHHHHHHHHHhhhhcCcc--cchhhhHhHHHHH
Q 010176 374 ELVGVVCDAYLAVVRGIRRAIMMKRA--VRVNSQLKSHKRF 412 (516)
Q Consensus 374 ~li~V~~d~elav~R~~~R~~~gGr~--Vp~~~ql~s~~rf 412 (516)
.+|++.++.+++.+|...|...+++. ++.+...+.++.|
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 140 (143)
T PF13671_consen 100 RVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARF 140 (143)
T ss_dssp EEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhh
Confidence 89999999999999999999877653 5555544444444
No 5
>COG0645 Predicted kinase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=142.77 Aligned_cols=123 Identities=23% Similarity=0.209 Sum_probs=104.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC---CCCChhhHHHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~---~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
++|++++|+|||||||+++.|.+.+ ++++| ++|.+||.|++. .+.+..+|+++. ...+|..+.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-------gA~~l------rsD~irk~L~g~p~~~r~~~g~ys~~~-~~~vy~~l~ 66 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-------GAIRL------RSDVIRKRLFGVPEETRGPAGLYSPAA-TAAVYDELL 66 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-------CceEE------ehHHHHHHhcCCcccccCCCCCCcHHH-HHHHHHHHH
Confidence 4689999999999999999999998 67999 999999999993 222356777777 777888888
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+..+|..|++||+|+||.++..|+....+|++.
T Consensus 67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~--------------------------------------------- 101 (170)
T COG0645 67 GRAELLLSSGHSVVLDATFDRPQERALARALARDV--------------------------------------------- 101 (170)
T ss_pred HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhcc---------------------------------------------
Confidence 89999999999999999999999999988887654
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAI 394 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~ 394 (516)
|..+.+|-+.+++++...|.+.|.-
T Consensus 102 -gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 102 -GVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -CCceEEEEcCCcHHHHHHHHHHhCC
Confidence 2345667778899999999999874
No 6
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.64 E-value=7.9e-15 Score=148.69 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=105.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|.+|++.|+|||||||+++.|++.+. +..+|+.|+++ +.+.+.+......+..+. ...........
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~------~~~~l~~D~~r------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP------KAVNVNRDDLR------QSLFGHGEWGEYKFTKEK-EDLVTKAQEAA 67 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC------CCEEEeccHHH------HHhcCCCcccccccChHH-HHHHHHHHHHH
Confidence 478999999999999999999999882 45899666654 444432110011111111 11223344557
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
+..++..|.+||+|+|+..+.+++.+.++++. .+
T Consensus 68 ~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~----------------------------------------------~~ 101 (300)
T PHA02530 68 ALAALKSGKSVIISDTNLNPERRRKWKELAKE----------------------------------------------LG 101 (300)
T ss_pred HHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----------------------------------------------cC
Confidence 78888999999999999999988887766543 24
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176 371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF 416 (516)
Q Consensus 371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~ 416 (516)
+.+.++++.+|.+++.+|...| ++|.+|.+.+.++|+++....
T Consensus 102 ~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~ 144 (300)
T PHA02530 102 AEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYR 144 (300)
T ss_pred CeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhc
Confidence 6677889999999999999999 689999999988888877543
No 7
>PRK06762 hypothetical protein; Provisional
Probab=99.53 E-value=1.1e-13 Score=128.59 Aligned_cols=133 Identities=15% Similarity=0.102 Sum_probs=92.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|++|+|+|+|||||||+|+.|++.++ .++++++. |.+++.+......+. .+. . ..+...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~------D~~r~~l~~~~~~~~-~~~----~----~~~~~~ 60 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQ------DVVRRDMLRVKDGPG-NLS----I----DLIEQL 60 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecH------HHHHHHhccccCCCC-CcC----H----HHHHHH
Confidence 589999999999999999999999883 26788954 555555543211011 011 1 112235
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
+..++..|.+||+|++|....++..+..++.. .+
T Consensus 61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~----------------------------------------------~~ 94 (166)
T PRK06762 61 VRYGLGHCEFVILEGILNSDRYGPMLKELIHL----------------------------------------------FR 94 (166)
T ss_pred HHHHHhCCCEEEEchhhccHhHHHHHHHHHHh----------------------------------------------cC
Confidence 56678899999999999877666665545322 23
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH
Q 010176 371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR 411 (516)
Q Consensus 371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r 411 (516)
+.+.++++.+|++++++|...|.. .|.++++.+...|..
T Consensus 95 ~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 95 GNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNP 133 (166)
T ss_pred CCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhh
Confidence 457789999999999999999973 577776665555444
No 8
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.49 E-value=2.2e-13 Score=149.04 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=89.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..+|.||+|+|+|||||||+++.++... ++++||.|++.. ++ .+.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-------g~~~vn~D~lg~------------------------~~----~~~ 410 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-------GYKHVNADTLGS------------------------TQ----NCL 410 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-------CCeEECcHHHHH------------------------HH----HHH
Confidence 4689999999999999999999999887 459996655421 11 123
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+.++|++|++||+|+||..++.|..++++|++
T Consensus 411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~---------------------------------------------- 444 (526)
T TIGR01663 411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARA---------------------------------------------- 444 (526)
T ss_pred HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHH----------------------------------------------
Confidence 4788999999999999999999999999988854
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcC
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMK 397 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gG 397 (516)
.|+.+.++++.+|.+++..|...|.....
T Consensus 445 ~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~ 473 (526)
T TIGR01663 445 AGIPCRCFLFNAPLAQAKHNIAFRELSDS 473 (526)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHhhccCCc
Confidence 35678889999999999999999987433
No 9
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.45 E-value=2.8e-12 Score=118.84 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=95.8
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 294 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~a 294 (516)
|++.|+|||||||+++.|+..+ +.++||.|.+......++.+.+...... . ....+..+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-------~~~~v~~D~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~ 66 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-------GAKFIEGDDLHPAANIEKMSAGIPLNDD--D-----RWPWLQNLNDASTAA 66 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-------CCeEEeCccccChHHHHHHHcCCCCChh--h-----HHHHHHHHHHHHHHH
Confidence 4688999999999999999998 3589999998654334454444321111 1 112223344466678
Q ss_pred HhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEE
Q 010176 295 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 374 (516)
Q Consensus 295 L~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~ 374 (516)
+..|.++|+++|+..+.+|+.+. ..++.+.
T Consensus 67 l~~~~~~Vi~~t~~~~~~r~~~~--------------------------------------------------~~~~~~~ 96 (163)
T TIGR01313 67 AAKNKVGIITCSALKRHYRDILR--------------------------------------------------EAEPNLH 96 (163)
T ss_pred HhcCCCEEEEecccHHHHHHHHH--------------------------------------------------hcCCCEE
Confidence 88898899999988766554321 1234567
Q ss_pred EEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176 375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 432 (516)
Q Consensus 375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn 432 (516)
++++.+|++++.+|...|. |+.++.+.+...|..+..+. + .- .++.++||+
T Consensus 97 ~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~--~-~e-~~~~~id~~ 147 (163)
T TIGR01313 97 FIYLSGDKDVILERMKARK---GHFMKADMLESQFAALEEPL--A-DE-TDVLRVDID 147 (163)
T ss_pred EEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCC--C-CC-CceEEEECC
Confidence 7899999999999999995 56666655555444422110 0 01 246888865
No 10
>COG4639 Predicted kinase [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=119.09 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=97.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
++.|+++.|+|||||||+++..... ..+++.|+++. .+... . ....+..-...+.+.+...
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~---------~~~lsld~~r~------~lg~~-~---~~e~sqk~~~~~~~~l~~~ 61 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQ---------NYVLSLDDLRL------LLGVS-A---SKENSQKNDELVWDILYKQ 61 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCC---------cceecHHHHHH------Hhhhc-h---hhhhccccHHHHHHHHHHH
Confidence 3689999999999999999975433 36785555543 23111 0 0011111122345556669
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
++..|..|...|+|||..+++.|..+++||..+ |
T Consensus 62 l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y----------------------------------------------~ 95 (168)
T COG4639 62 LEQRLRRGKFTIIDATNLRREDRRKLIDLAKAY----------------------------------------------G 95 (168)
T ss_pred HHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHh----------------------------------------------C
Confidence 999999999999999999999999999998764 3
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH
Q 010176 371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR 411 (516)
Q Consensus 371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r 411 (516)
|.+.+|+++.|++++.+|...|. |.||++.+.++++.
T Consensus 96 ~~~~~ivfdtp~~~c~aRNk~~~----Rqv~~~VI~r~~r~ 132 (168)
T COG4639 96 YKIYAIVFDTPLELCLARNKLRE----RQVPEEVIPRMLRE 132 (168)
T ss_pred CeEEEEEEeCCHHHHHHHhhccc----hhCCHHHHHHHHHH
Confidence 55777889999999999888555 89999999888877
No 11
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.40 E-value=7.2e-12 Score=114.37 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=83.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
||+++|+|||||||+++.|++.+ +..+++.|.++..-...+...+... .+... +. ....+...+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-------~~~~i~~D~~~~~~~~~~~~~~~~~-~~~~~--~~----~~~~~~~~~~~ 66 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-------GAPFIDGDDLHPPANIAKMAAGIPL-NDEDR--WP----WLQALTDALLA 66 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-------CCEEEeCcccccHHHHHHHHcCCCC-Cccch--hh----HHHHHHHHHHH
Confidence 58899999999999999999987 4589999998764222222223211 11000 11 11111112222
Q ss_pred -HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCce
Q 010176 294 -ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR 372 (516)
Q Consensus 294 -aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~ 372 (516)
.+..|.+||+|+++..+.+++.+.++| .|+.
T Consensus 67 ~l~~~~~~vVid~~~~~~~~r~~~~~~~------------------------------------------------~~~~ 98 (150)
T cd02021 67 KLASAGEGVVVACSALKRIYRDILRGGA------------------------------------------------ANPR 98 (150)
T ss_pred HHHhCCCCEEEEeccccHHHHHHHHhcC------------------------------------------------CCCC
Confidence 235899999999998877665543332 2455
Q ss_pred EEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHH
Q 010176 373 IELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK 410 (516)
Q Consensus 373 I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~ 410 (516)
+.++++.||+++..+|...|. ++..|...+...++
T Consensus 99 ~~~v~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~ 133 (150)
T cd02021 99 VRFVHLDGPREVLAERLAARK---GHFMPADLLDSQFE 133 (150)
T ss_pred EEEEEEECCHHHHHHHHHhcc---cCCCCHHHHHHHHH
Confidence 778999999999999999995 55555444444333
No 12
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.36 E-value=7.3e-12 Score=118.01 Aligned_cols=128 Identities=17% Similarity=0.140 Sum_probs=82.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH-h-cCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL-S-SKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L-~-~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
..+|++.|+|||||||+++.|.+.++. ..++++.|.+...-+....- . +....++..+.++..+...|.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-----PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-----CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence 458999999999999999999988732 34677777664331110000 0 0000010111222235566777777
Q ss_pred HHHHHHhCCCcEEEeCCCC-ChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 290 LLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs-~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
.+..++++|.+||+|+++. .+..++.+..+
T Consensus 77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~------------------------------------------------- 107 (175)
T cd00227 77 AVAAMARAGANVIADDVFLGRAALQDCWRSF------------------------------------------------- 107 (175)
T ss_pred HHHHHHhCCCcEEEeeeccCCHHHHHHHHHh-------------------------------------------------
Confidence 8899999999999999998 45444332111
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.+..+.+|++.||.+++.+|...|.
T Consensus 108 ~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 108 VGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred cCCCEEEEEEECCHHHHHHHHHhcC
Confidence 1234678999999999999999985
No 13
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.34 E-value=3.7e-11 Score=116.55 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC---C-CCChhhHHH----------
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---G-HHDDMLQTA---------- 276 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~---~-~~~~~~y~~---------- 276 (516)
.|.+|+++|+|||||||+++.|+++++. ..++ .+|.+|+.+.+. + ......|.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~------~~~~------~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~ 69 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI------DIVL------SGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDE 69 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC------eEEe------hhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchh
Confidence 5789999999999999999999999853 3567 455555555432 1 000000100
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhc
Q 010176 277 ------ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQV 350 (516)
Q Consensus 277 ------e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v 350 (516)
....+.++..+...+..++.+|++||+|+++..+.+++. +.
T Consensus 70 ~~~~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~----------------------------- 116 (197)
T PRK12339 70 NIVKGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NR----------------------------- 116 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HH-----------------------------
Confidence 001234555677889999999999999999999876532 10
Q ss_pred cccchhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHH
Q 010176 351 KEGEEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFA 413 (516)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~ 413 (516)
..+ +.++++. .|+++...|+..|...++++.|.++.++.|+...
T Consensus 117 -----------------~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir 161 (197)
T PRK12339 117 -----------------TNN--IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYR 161 (197)
T ss_pred -----------------hcC--eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence 011 2344554 5899999999999999999999876666555433
No 14
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.27 E-value=7.4e-11 Score=117.32 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=90.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
||+++|+|||||||+++.|++.+.. .+.+.++++.|.++.. +... ...+. .. ........+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~--~~~~v~~i~~D~lr~~------~~~~----~~~~e-~~----~~~~~~~~i~~ 63 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE--KNIDVIILGTDLIRES------FPVW----KEKYE-EF----IRDSTLYLIKT 63 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--cCCceEEEccHHHHHH------hHHh----hHHhH-HH----HHHHHHHHHHH
Confidence 6899999999999999999987732 1235678866655432 2110 00011 11 11223347888
Q ss_pred HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 373 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I 373 (516)
+++.|..||+|+++....+|..+..+|+.. ++..
T Consensus 64 ~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~----------------------------------------------~~~~ 97 (249)
T TIGR03574 64 ALKNKYSVIVDDTNYYNSMRRDLINIAKEY----------------------------------------------NKNY 97 (249)
T ss_pred HHhCCCeEEEeccchHHHHHHHHHHHHHhC----------------------------------------------CCCE
Confidence 999999999999998877777776665432 3345
Q ss_pred EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHH
Q 010176 374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFAN 414 (516)
Q Consensus 374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~ 414 (516)
.+|++.+|+++++.|...| |+.+|.+.+...+.+|..
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~e~ 134 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIER----GEKIPNEVIKDMYEKFDE 134 (249)
T ss_pred EEEEecCCHHHHHHHHHhC----CCCCCHHHHHHHHHhhCC
Confidence 6688999999999998776 456776666666666643
No 15
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.22 E-value=1.1e-10 Score=107.79 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=77.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
+++|+|+|||||||+++.|+..+.. .+.++++++.|.+ ++.+.+... +..+. ....++.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~--~g~~~~~i~~d~~------r~~l~~~~~-----~~~~~-~~~~~~~~~~~a~~ 66 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ--RGRPVYVLDGDNV------RHGLNKDLG-----FSRED-REENIRRIAEVAKL 66 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCHHH------HHhhhhccC-----CCcch-HHHHHHHHHHHHHH
Confidence 3788999999999999999998732 1124678855554 444443200 11111 12233334456777
Q ss_pred HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 373 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I 373 (516)
.+++|.+||+|+++.++..|..+.+++ . ++.+
T Consensus 67 l~~~G~~VIid~~~~~~~~R~~~~~l~----------------------------------------------~--~~~~ 98 (149)
T cd02027 67 LADAGLIVIAAFISPYREDREAARKII----------------------------------------------G--GGDF 98 (149)
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHhc----------------------------------------------C--CCCE
Confidence 888999999999999888876654442 1 4557
Q ss_pred EEEEEecCHHHHHHHHH
Q 010176 374 ELVGVVCDAYLAVVRGI 390 (516)
Q Consensus 374 ~li~V~~d~elav~R~~ 390 (516)
.++++.||++++..|..
T Consensus 99 ~~i~l~~~~e~~~~R~~ 115 (149)
T cd02027 99 LEVFVDTPLEVCEQRDP 115 (149)
T ss_pred EEEEEeCCHHHHHHhCc
Confidence 78999999999988753
No 16
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.18 E-value=3.1e-10 Score=107.58 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=66.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..+|.+++|+|+|||||||+++.|...+.. .+.++++++.|.+ ++.+.+.. .|..+. ....+..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~--~~~~~~~l~~d~~------r~~l~~~~-----~~~~~~-~~~~~~~~~ 80 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLES--KGYRVYVLDGDNV------RHGLNKDL-----GFSEED-RKENIRRIG 80 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECChHH------Hhhhcccc-----CCCHHH-HHHHHHHHH
Confidence 356899999999999999999999988631 1224688855554 44454421 111222 223334445
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
..+...+.+|.+||+|+++..+.+|+.+..+
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~ 111 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMVREL 111 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHHh
Confidence 5777889999999999999998888766544
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.18 E-value=5.4e-10 Score=105.13 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=90.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHH------HHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE------LVHQSSTDAA 287 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e------~v~~~~~~~a 287 (516)
+|+|.|+|||||||+++.|++++ ++++|++++ .+++.+... ++....... .+... .+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-------~~~~is~~d-----~lr~~~~~~--~~~~~~~~~~~~~g~~~~~~---~~ 63 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-------GFTHLSAGD-----LLRAEIKSG--SENGELIESMIKNGKIVPSE---VT 63 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-------CCeEEECCh-----HHHHHHhcC--ChHHHHHHHHHHCCCcCCHH---HH
Confidence 47899999999999999999998 458996533 333333321 000000000 00000 11
Q ss_pred HHHHHHHHhC--CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176 288 SSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365 (516)
Q Consensus 288 ~~la~~aL~~--G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~ 365 (516)
..++...+.. +..||+|+.+.+..++..+..++..
T Consensus 64 ~~ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~------------------------------------------- 100 (183)
T TIGR01359 64 VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDN------------------------------------------- 100 (183)
T ss_pred HHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhc-------------------------------------------
Confidence 1233344432 6789999999887766655443210
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhH---HHhhccCceEEEEecC
Q 010176 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF---RNYCELVDNARLYCTN 432 (516)
Q Consensus 366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~---~~y~~lvD~~~lydnn 432 (516)
.....+ ++++.+|++.+..|...|....||.-. .+.+.+++..|.+.. ..|...-+.+..+|++
T Consensus 101 --~~~~d~-~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~ 168 (183)
T TIGR01359 101 --KVNFKF-VLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAE 168 (183)
T ss_pred --CCCCCE-EEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 001122 588899999999999999765555433 445555554444433 3333444667888855
No 18
>PRK14527 adenylate kinase; Provisional
Probab=99.15 E-value=2.1e-09 Score=102.74 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHH---HHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTD 285 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~---~~~~ 285 (516)
..+|.+|++.|+|||||||+++.|++.++ ..+++.|++ +++.+.... +......+.... ...+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~-------~~~is~gd~-----~r~~~~~~~--~~~~~~~~~~~~g~~~p~~ 68 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELG-------LKKLSTGDI-----LRDHVARGT--ELGQRAKPIMEAGDLVPDE 68 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC-------CCCCCccHH-----HHHHHhcCc--HHHHHHHHHHHcCCCCcHH
Confidence 34689999999999999999999999984 477855433 233332210 000000000000 0001
Q ss_pred HHHHHHHHHHhC--CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhh
Q 010176 286 AASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 363 (516)
Q Consensus 286 ~a~~la~~aL~~--G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~ 363 (516)
.+..++...+.+ +..+|+|+...+..+++.+..+++..
T Consensus 69 ~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~---------------------------------------- 108 (191)
T PRK14527 69 LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEEL---------------------------------------- 108 (191)
T ss_pred HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHc----------------------------------------
Confidence 123345555544 46799999777777766655554321
Q ss_pred ccccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHH
Q 010176 364 QVFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFR 417 (516)
Q Consensus 364 ~~~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~ 417 (516)
|..+ .+++++||+++++.|...|....||.- .++.+.++++.|.++..
T Consensus 109 ------g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~ 158 (191)
T PRK14527 109 ------GARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQ 158 (191)
T ss_pred ------CCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhH
Confidence 1222 257889999999999999987666643 36666666666655444
No 19
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.14 E-value=2.2e-09 Score=115.66 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=106.2
Q ss_pred HHHHHhHHHHHh-ccchHHHHHHHHhcccccccccccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEE
Q 010176 169 KVTKDLKMKRVF-STLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (516)
Q Consensus 169 RA~vRaKV~~~~-~~~~~e~~~~~~~~A~~~~~~~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~ 247 (516)
|+.+|.+|.... ....++.... -.+++.+. ...+|.+|+++|+|||||||++..|+..+++ ..+
T Consensus 220 ra~VR~~V~~~L~~~l~~~~a~~-y~la~~i~--------~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~------~~i 284 (475)
T PRK12337 220 RDQLRRKVEALLLEEAGEEVARR-YRLLRSIR--------RPPRPLHVLIGGVSGVGKSVLASALAYRLGI------TRI 284 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHH-HHHHHHhh--------ccCCCeEEEEECCCCCCHHHHHHHHHHHcCC------cEE
Confidence 899999998765 3222211111 12333333 4457999999999999999999999999854 247
Q ss_pred EeCcccccchHHHHHHhcC---C-----C-----------CC-----hhhHH-----H-HHHHHHHHHHHHHHHHHHHhC
Q 010176 248 VEADAFKETDVIYRALSSK---G-----H-----------HD-----DMLQT-----A-ELVHQSSTDAASSLLVTALNE 297 (516)
Q Consensus 248 IdaD~ir~sD~irk~L~~~---~-----~-----------~~-----~~~y~-----~-e~v~~~~~~~a~~la~~aL~~ 297 (516)
|++|.++. .+.+. + + .+ ...+. . ...-+.+...+..+++.++..
T Consensus 285 i~tD~iR~------~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~e 358 (475)
T PRK12337 285 VSTDAVRE------VLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQE 358 (475)
T ss_pred eehhHHHH------HHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 86666553 22221 0 0 00 00010 0 000112334467899999999
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEE
Q 010176 298 GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVG 377 (516)
Q Consensus 298 G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~ 377 (516)
|.|||+|++...+.+++. +. +..+--|. +.
T Consensus 359 G~SvIIEGVHl~P~~i~~----~~---------------------------------------------~~~~~~i~-fl 388 (475)
T PRK12337 359 GTSLVLEGVHLVPGYLRH----PY---------------------------------------------QAGALVVP-ML 388 (475)
T ss_pred CCeEEEECCCCCHHHHHH----HH---------------------------------------------hcCCceEE-EE
Confidence 999999999999876541 10 11111132 34
Q ss_pred Ee-cCHHHHHHHHHHhhhhcCcccchhhhHhHHH
Q 010176 378 VV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK 410 (516)
Q Consensus 378 V~-~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~ 410 (516)
|+ .|.+....|...|...++..-|.++.++.|+
T Consensus 389 v~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~ 422 (475)
T PRK12337 389 VTLPDEALHRRRFELRDRETGASRPRERYLRHFE 422 (475)
T ss_pred EEECCHHHHHHHHHHHhhhccCCCchhHHHHhHH
Confidence 44 5999999999999998877777666555444
No 20
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=6.5e-10 Score=103.50 Aligned_cols=139 Identities=13% Similarity=0.081 Sum_probs=97.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
.+-|..|++.|++||||||+++.|.+++++ .++|+|++...-...|.-.|. ..++...++.+ + .. .
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~-------~F~dgDd~Hp~~NveKM~~Gi-pLnD~DR~pWL-~-~i----~ 74 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGL-------KFIDGDDLHPPANVEKMTQGI-PLNDDDRWPWL-K-KI----A 74 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCC-------cccccccCCCHHHHHHHhcCC-CCCcccccHHH-H-HH----H
Confidence 345678999999999999999999999976 899999998655455543332 11232233333 1 11 1
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+...+..|+-||+-++-+.+.||+.+..-. ..|++.+.
T Consensus 75 ~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl----------------------------------------~~gk~~~~ 114 (191)
T KOG3354|consen 75 VELRKALASGQGVVLACSALKKKYRDILRHSL----------------------------------------KDGKPGKC 114 (191)
T ss_pred HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhc----------------------------------------ccCCccCC
Confidence 23444555899999999999998888765311 11222344
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS 404 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ 404 (516)
....+.++++..+.|+-..|...|. ||.+|.+.
T Consensus 115 ~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~l 147 (191)
T KOG3354|consen 115 PESQLHFILLSASFEVILKRLKKRK---GHFMPADL 147 (191)
T ss_pred ccceEEEeeeeccHHHHHHHHhhcc---cccCCHHH
Confidence 5566888888899999999999998 79999654
No 21
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.11 E-value=9.2e-10 Score=103.21 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|.+|+++|+|||||||+|+.|.+.+.- .+..+.+||.|.++.. |... ..++.+- ..+..+.+..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~--~g~~~~~LDgD~lR~~------l~~d-----l~fs~~d-R~e~~rr~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA--RGIKVYLLDGDNLRHG------LNAD-----LGFSKED-REENIRRIAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH--TTS-EEEEEHHHHCTT------TTTT-------SSHHH-HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEecCcchhhc------cCCC-----CCCCHHH-HHHHHHHHHHH
Confidence 5889999999999999999999988842 2457899988887754 3321 1111122 33444556778
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
+....++|..||+.+.-..++.|+.+.++
T Consensus 67 A~ll~~~G~ivIva~isp~~~~R~~~R~~ 95 (156)
T PF01583_consen 67 AKLLADQGIIVIVAFISPYREDREWAREL 95 (156)
T ss_dssp HHHHHHTTSEEEEE----SHHHHHHHHHH
T ss_pred HHHHHhCCCeEEEeeccCchHHHHHHHHh
Confidence 99999999999999888888877766544
No 22
>PRK14532 adenylate kinase; Provisional
Probab=99.08 E-value=2.2e-09 Score=101.78 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=74.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC---------ChhhHHHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH---------DDMLQTAELVHQSSTD 285 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~---------~~~~y~~e~v~~~~~~ 285 (516)
|++.|+|||||||+++.|++.++ .++|++|++- ++.+...... ....+..+. +..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g-------~~~is~~d~l-----r~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~ 66 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG-------MVQLSTGDML-----RAAIASGSELGQRVKGIMDRGELVSDEI----VIA 66 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-------CeEEeCcHHH-----HHHHHcCCHHHHHHHHHHHCCCccCHHH----HHH
Confidence 78899999999999999999984 5899774432 2222110000 000011111 111
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176 286 AASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365 (516)
Q Consensus 286 ~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~ 365 (516)
.+...+ ..+..|..||+|+...+..+++.+.+++...
T Consensus 67 ~~~~~~-~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~------------------------------------------ 103 (188)
T PRK14532 67 LIEERL-PEAEAAGGAIFDGFPRTVAQAEALDKMLASR------------------------------------------ 103 (188)
T ss_pred HHHHHH-hCcCccCcEEEeCCCCCHHHHHHHHHHHHhc------------------------------------------
Confidence 111122 1223577899999999888877766554321
Q ss_pred ccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176 366 FSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAV 400 (516)
Q Consensus 366 ~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~V 400 (516)
|..+ .++++++|++.++.|...|....+|.-
T Consensus 104 ----g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~d 135 (188)
T PRK14532 104 ----GQKIDVVIRLKVDDEALIERIVKRFEEQGRPD 135 (188)
T ss_pred ----CCCCCEEEEEECCHHHHHHHHHcCcCcCCCCC
Confidence 1112 358889999999999999975545544
No 23
>PRK06696 uridine kinase; Validated
Probab=99.07 E-value=3.2e-10 Score=111.17 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~ 264 (516)
...|.+|.|+|+|||||||+|+.|++.+.. .+-.++++..|+|-..+..++.+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--~g~~v~~~~~Ddf~~~~~~r~~~~ 72 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK--RGRPVIRASIDDFHNPRVIRYRRG 72 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeccccccCCHHHHHHcC
Confidence 457999999999999999999999998832 012456778899988877766553
No 24
>PLN02200 adenylate kinase family protein
Probab=99.04 E-value=8.8e-09 Score=102.41 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=89.5
Q ss_pred cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHH-----
Q 010176 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAEL----- 278 (516)
Q Consensus 204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~----- 278 (516)
+..+..+.|.+|+|.|+|||||||+++.|++.++ ..+|+.++ .+|+.+.... +......+.
T Consensus 35 ~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g-------~~his~gd-----llR~~i~~~s--~~~~~i~~~~~~G~ 100 (234)
T PLN02200 35 GSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG-------FKHLSAGD-----LLRREIASNS--EHGAMILNTIKEGK 100 (234)
T ss_pred cCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC-------CeEEEccH-----HHHHHHhccC--hhHHHHHHHHHcCC
Confidence 3333456789999999999999999999999984 47885533 3344443311 000000000
Q ss_pred -HHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccch
Q 010176 279 -VHQSSTDAASSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE 355 (516)
Q Consensus 279 -v~~~~~~~a~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~ 355 (516)
+.. +....++...+. .+..+|+|+......++..+..++.
T Consensus 101 ~vp~---e~~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~---------------------------------- 143 (234)
T PLN02200 101 IVPS---EVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIG---------------------------------- 143 (234)
T ss_pred CCcH---HHHHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhc----------------------------------
Confidence 000 001112222222 2467999998877655544332210
Q ss_pred hhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhHHH---hhccCceEEEEec
Q 010176 356 DYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFRN---YCELVDNARLYCT 431 (516)
Q Consensus 356 ~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~~~---y~~lvD~~~lydn 431 (516)
..+ -.++++.+++++.+.|...|.. +|... ++.+.++.+.|...... |-+--+.++.+|+
T Consensus 144 ------------~~p--d~vi~Ld~~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 144 ------------AEP--NVVLFFDCPEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred ------------cCC--CEEEEEECCHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 011 1357889999999999998853 34322 44555555555544333 3222345677774
Q ss_pred C
Q 010176 432 N 432 (516)
Q Consensus 432 n 432 (516)
+
T Consensus 208 ~ 208 (234)
T PLN02200 208 V 208 (234)
T ss_pred C
Confidence 4
No 25
>PRK14531 adenylate kinase; Provisional
Probab=99.02 E-value=5.9e-09 Score=99.17 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=84.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhh----HHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDML----QTAELVHQSSTDAA 287 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~----y~~e~v~~~~~~~a 287 (516)
+.-|++.|+|||||||+++.|++.+ +..+|+++ |.+|+++.+........ .....+..++.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~-------g~~~is~g-----d~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~--- 66 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH-------GLRHLSTG-----DLLRSEVAAGSALGQEAEAVMNRGELVSDALV--- 66 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-------CCCeEecc-----cHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHH---
Confidence 3458889999999999999999998 45889653 33444443310000000 00000011111
Q ss_pred HHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcc
Q 010176 288 SSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 365 (516)
Q Consensus 288 ~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~ 365 (516)
..+....+. .+..+|+|+...+..+...+.+++....
T Consensus 67 ~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~----------------------------------------- 105 (183)
T PRK14531 67 LAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELK----------------------------------------- 105 (183)
T ss_pred HHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcC-----------------------------------------
Confidence 112222222 3567999999998877666554433210
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHHhHH---HhhccCceEEEEec
Q 010176 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFANAFR---NYCELVDNARLYCT 431 (516)
Q Consensus 366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~~~~---~y~~lvD~~~lydn 431 (516)
..+ ..++++.||+++.+.|...|. |. -..+.+.+++..|..... +|-+--+.+..+|+
T Consensus 106 --~~~--~~vi~l~~~~~~l~~Rl~~R~----r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~ 167 (183)
T PRK14531 106 --QPI--EAVVLLELDDAVLIERLLARG----RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEA 167 (183)
T ss_pred --CCC--CeEEEEECCHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 011 125888999999999999883 42 234455455554444333 33222334555553
No 26
>PRK12338 hypothetical protein; Provisional
Probab=99.02 E-value=8.7e-09 Score=106.72 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=85.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCC-C--CC---hhhHHH-------
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-H--HD---DMLQTA------- 276 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~-~--~~---~~~y~~------- 276 (516)
++|.+|+++|+|||||||+|+.|++.+++ ..++..|.+ ++.+.+.. . .| ...|.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~------~~~~~tD~~------r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~ 69 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNI------KHLIETDFI------REVVRGIIGKEYAPALHKSSYNAYTALRDK 69 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCC------eEEccChHH------HHHHcCCCCcccCchhhcccHHHHhhcCCc
Confidence 46899999999999999999999999854 234544444 44444421 0 00 000110
Q ss_pred -------H-------HHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcc
Q 010176 277 -------E-------LVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTV 342 (516)
Q Consensus 277 -------e-------~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~ 342 (516)
+ ...+.+...+...+..++..|.++|+||+...|.+.... +
T Consensus 70 ~~~~~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~----~--------------------- 124 (319)
T PRK12338 70 ENFKNNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE----Q--------------------- 124 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh----h---------------------
Confidence 0 012334555677899999999999999999988765421 0
Q ss_pred cccchhhccccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCc
Q 010176 343 IENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR 398 (516)
Q Consensus 343 ~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr 398 (516)
......|.++.+..|.+....|...|...++|
T Consensus 125 ------------------------~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r 156 (319)
T PRK12338 125 ------------------------FEENASIHFFILSADEEVHKERFVKRAMEIKR 156 (319)
T ss_pred ------------------------hcccCceEEEEEECCHHHHHHHHHHhhhccCC
Confidence 00112355566668999999999999987776
No 27
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=2.8e-09 Score=98.61 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=90.0
Q ss_pred cCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010176 219 GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEG 298 (516)
Q Consensus 219 G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~aL~~G 298 (516)
|.+||||||++..|+++++ +.+||.|++.....+.|.-.|. +..+....+.+ +.+...+......|
T Consensus 2 GVsG~GKStvg~~lA~~lg-------~~fidGDdlHp~aNi~KM~~Gi-PL~DdDR~pWL------~~l~~~~~~~~~~~ 67 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-------AKFIDGDDLHPPANIEKMSAGI-PLNDDDRWPWL------EALGDAAASLAQKN 67 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-------CceecccccCCHHHHHHHhCCC-CCCcchhhHHH------HHHHHHHHHhhcCC
Confidence 8999999999999999995 4899999998877777765553 22233333433 22223555556678
Q ss_pred CcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEEE
Q 010176 299 RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGV 378 (516)
Q Consensus 299 ~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V 378 (516)
.++|+-++-+.+.||+.++.- ..+ +.+||+
T Consensus 68 ~~~vi~CSALKr~YRD~LR~~------------------------------------------------~~~--~~Fv~L 97 (161)
T COG3265 68 KHVVIACSALKRSYRDLLREA------------------------------------------------NPG--LRFVYL 97 (161)
T ss_pred CceEEecHHHHHHHHHHHhcc------------------------------------------------CCC--eEEEEe
Confidence 888998888888888875311 112 788999
Q ss_pred ecCHHHHHHHHHHhhhhcCcccchhhhHh
Q 010176 379 VCDAYLAVVRGIRRAIMMKRAVRVNSQLK 407 (516)
Q Consensus 379 ~~d~elav~R~~~R~~~gGr~Vp~~~ql~ 407 (516)
..+.++...|+..|. ||.+|......
T Consensus 98 ~g~~~~i~~Rm~~R~---gHFM~~~ll~S 123 (161)
T COG3265 98 DGDFDLILERMKARK---GHFMPASLLDS 123 (161)
T ss_pred cCCHHHHHHHHHhcc---cCCCCHHHHHH
Confidence 999999999999997 99999655433
No 28
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.00 E-value=4.2e-09 Score=100.45 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=75.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC----CCC----ChhhHHHHHHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHH----DDMLQTAELVHQSST 284 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~----~~~----~~~~y~~e~v~~~~~ 284 (516)
.+|++.|+|-|||||+++.|.+.+. ....++.-|.|. +.+.+. +.. ++.... ......++
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 69 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFV------DMMPPGRYRPGDGLEPAGDRPDG-GPLFRRLY 69 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHH------HHS-GGGGTSTTSEEEETTSEEE--HHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHH------hhcCcccccCCccccccccCCch-hHHHHHHH
Confidence 5899999999999999999999883 356889555554 333221 000 000001 12255566
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCChHH-HHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhh
Q 010176 285 DAASSLLVTALNEGRDVIMDGTLSWVPF-VEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 363 (516)
Q Consensus 285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~-r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~ 363 (516)
..+..-+....+.|.+||+|.++..+.+ .+.+.++
T Consensus 70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~-------------------------------------------- 105 (174)
T PF07931_consen 70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRL-------------------------------------------- 105 (174)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHH--------------------------------------------
Confidence 6666788889999999999999988754 2221111
Q ss_pred ccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176 364 QVFSRKPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 364 ~~~~~~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
=.||.|.+|+|.||++++.+|-+.|.
T Consensus 106 ----L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 106 ----LAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp ----HTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred ----hCCCceEEEEEECCHHHHHHHHHhcC
Confidence 13678999999999999988888886
No 29
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.99 E-value=3.9e-09 Score=102.65 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=91.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHH-HHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST-DAASSLL 291 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~-~~a~~la 291 (516)
.||+++|+|||||||+|+.|++.+.- ..-..+++.+|... --++.. + .+.. ..+|.++. +....++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~--~i~~vi~l~kdy~~------~i~~DE--s-lpi~--ke~yres~~ks~~rll 68 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ--EIWRVIHLEKDYLR------GILWDE--S-LPIL--KEVYRESFLKSVERLL 68 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH--hhhhccccchhhhh------heeccc--c-cchH--HHHHHHHHHHHHHHHH
Confidence 37899999999999999999987721 11144666443321 001110 0 1111 11122222 1223366
Q ss_pred HHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCc
Q 010176 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 371 (516)
Q Consensus 292 ~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy 371 (516)
..+++ .+-||+|+|.--.++|.++.-.|.+. ..+|
T Consensus 69 dSalk-n~~VIvDdtNYyksmRrqL~ceak~~--------------------------------------------~tt~ 103 (261)
T COG4088 69 DSALK-NYLVIVDDTNYYKSMRRQLACEAKER--------------------------------------------KTTW 103 (261)
T ss_pred HHHhc-ceEEEEecccHHHHHHHHHHHHHHhc--------------------------------------------CCce
Confidence 67776 77899999999999999887666542 1122
Q ss_pred eEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHH
Q 010176 372 RIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFR 417 (516)
Q Consensus 372 ~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~ 417 (516)
-+|++.|+++++..|- .+.|.+.|.+...+.|.||-++=.
T Consensus 104 --ciIyl~~plDtc~rrN----~ergepip~Evl~qly~RfEePn~ 143 (261)
T COG4088 104 --CIIYLRTPLDTCLRRN----RERGEPIPEEVLRQLYDRFEEPNP 143 (261)
T ss_pred --EEEEEccCHHHHHHhh----ccCCCCCCHHHHHHHHHhhcCCCC
Confidence 3588899999996655 667899999999999999987543
No 30
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.99 E-value=1.2e-08 Score=97.21 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=78.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASS 289 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--~~y~~e~v~~~~~~~a~~ 289 (516)
..++++.|+|||||||+++.|+..+. .++++.|.+.....+++...+...... ..|.... .+.++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~-------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~----- 69 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS-------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERL-NDASY----- 69 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHH-HHHHH-----
Confidence 45789999999999999999999874 379999998655445665544322111 1122111 12121
Q ss_pred HHHHHHhCCC-cEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 290 LLVTALNEGR-DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 290 la~~aL~~G~-sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+..+. .+|+ +||..+.+|+.+ ++
T Consensus 70 ---~~~~~~~~g~iv-~s~~~~~~R~~~----r~---------------------------------------------- 95 (176)
T PRK09825 70 ---SLYKKNETGFIV-CSSLKKQYRDIL----RK---------------------------------------------- 95 (176)
T ss_pred ---HHHhcCCCEEEE-EEecCHHHHHHH----Hh----------------------------------------------
Confidence 1223223 3344 889888777643 11
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVN 403 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~ 403 (516)
.+..+.++++.|++++...|+..|. ||.++.+
T Consensus 96 ~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~~~~ 127 (176)
T PRK09825 96 SSPNVHFLWLDGDYETILARMQRRA---GHFMPPD 127 (176)
T ss_pred hCCCEEEEEEeCCHHHHHHHHhccc---CCCCCHH
Confidence 1233677899999999999999996 5766543
No 31
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.98 E-value=2.8e-08 Score=93.31 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=72.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--------hhHHHHHHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--------MLQTAELVHQSST 284 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--------~~y~~e~v~~~~~ 284 (516)
.+|++.|+|||||||+++.|++.++ ..+++++++ +++.+.+...... ..+.+ ...++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g-------~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 68 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG-------FTHLSTGDL-----LRAEVASGSERGKQLQAIMESGDLVP---LDTVL 68 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH-----HHHHHhcCCHHHHHHHHHHHCCCCCC---HHHHH
Confidence 3677889999999999999999884 478866432 3333322100000 00000 11222
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhc
Q 010176 285 DAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 364 (516)
Q Consensus 285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~ 364 (516)
..+...+...+..|..||+|+..........+ ...
T Consensus 69 ~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~---~~~------------------------------------------ 103 (188)
T TIGR01360 69 DLLKDAMVAALGTSKGFLIDGYPREVKQGEEF---ERR------------------------------------------ 103 (188)
T ss_pred HHHHHHHHcccCcCCeEEEeCCCCCHHHHHHH---HHc------------------------------------------
Confidence 33334455557788999999876553222211 100
Q ss_pred cccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176 365 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV 400 (516)
Q Consensus 365 ~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V 400 (516)
. +....++++.+|++.++.|...|....+|..
T Consensus 104 --~--~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d 135 (188)
T TIGR01360 104 --I--GPPTLVLYFDCSEDTMVKRLLKRAETSGRVD 135 (188)
T ss_pred --C--CCCCEEEEEECCHHHHHHHHHcccccCCCCC
Confidence 0 0112357889999999999999976555543
No 32
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.95 E-value=4.9e-09 Score=117.84 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
.+|.+|+|+|+|||||||+|+.|+..+.. .+.++++||.|+++ +.+.+. ..|+.+. ....+..+..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r------~~l~~~-----~~~~~~~-r~~~~~~l~~ 523 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVR------HGLNRD-----LGFSDAD-RVENIRRVAE 523 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhh------hccCCC-----CCCCHHH-HHHHHHHHHH
Confidence 46999999999999999999999998742 13467899665554 445431 1133333 3445555566
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
.+...+++|.+||+|+++..+..|+.+.++
T Consensus 524 ~a~~~~~~G~~Vivda~~~~~~~R~~~r~l 553 (632)
T PRK05506 524 VARLMADAGLIVLVSFISPFREERELARAL 553 (632)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHh
Confidence 888888999999999999988888765544
No 33
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=8.1e-09 Score=99.41 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~a 287 (516)
+.+|.+|.|.|+|||||||+++.|...+.. .+.+.++++.|.++. .+... +.. .+. ....+..+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~--~~~~~~~ld~d~~~~------~~~~~~~~~------~~~-~~~~~~~l 85 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE--LGVSTYLLDGDNVRH------GLCSDLGFS------DAD-RKENIRRV 85 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh--CCCCEEEEcCEeHHh------hhhhcCCcC------ccc-HHHHHHHH
Confidence 367999999999999999999999987732 123578997777653 23221 111 111 22333444
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
...+...+.+|.+||.+.....+++|+.+.++
T Consensus 86 ~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~ 117 (198)
T PRK03846 86 GEVAKLMVDAGLVVLTAFISPHRAERQMVRER 117 (198)
T ss_pred HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHH
Confidence 45778888899988876555567788776655
No 34
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.93 E-value=9.4e-09 Score=96.45 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred ecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 010176 218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASSLLVTAL 295 (516)
Q Consensus 218 ~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~--~~y~~e~v~~~~~~~a~~la~~aL 295 (516)
.|+|||||||+++.|+..+ +.++|+.|.+.....+++.+.+...... ..|.... ...++ ....
T Consensus 1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-------~~~~ 65 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL-NDAAF-------AMQR 65 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHH-HHHHH-------HHHH
Confidence 4999999999999999998 4589999987554446665555422111 1122111 11111 1123
Q ss_pred hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEE
Q 010176 296 NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIEL 375 (516)
Q Consensus 296 ~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~l 375 (516)
..|.+||+ +||..+.+|+.+.+ .+..+.+
T Consensus 66 ~~~~~viv-~s~~~~~~r~~~~~--------------------------------------------------~~~~~~~ 94 (163)
T PRK11545 66 TNKVSLIV-CSALKKHYRDLLRE--------------------------------------------------GNPNLSF 94 (163)
T ss_pred cCCceEEE-EecchHHHHHHHHc--------------------------------------------------cCCCEEE
Confidence 45667777 89998777654321 2234677
Q ss_pred EEEecCHHHHHHHHHHhh
Q 010176 376 VGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 376 i~V~~d~elav~R~~~R~ 393 (516)
+++.||+++..+|+..|.
T Consensus 95 v~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 95 IYLKGDFDVIESRLKARK 112 (163)
T ss_pred EEEECCHHHHHHHHHhcc
Confidence 999999999999999996
No 35
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.92 E-value=1.3e-08 Score=95.56 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=55.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc-CCCCChhhHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~-~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
++.+|+|.|+|||||||+++.|+..+.. .+.+..++|.|.++ +.+.. ....... ....+..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~--~g~~v~~id~D~~~------~~~~~~~~~~~~~-------r~~~~~~~~~ 67 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE--AGYPVEVLDGDAVR------TNLSKGLGFSKED-------RDTNIRRIGF 67 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEcCccHH------HHHhcCCCCChhh-------HHHHHHHHHH
Confidence 5779999999999999999999988732 12246789777664 33432 1111110 1112222233
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHH
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQ 315 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~ 315 (516)
.+......|..||+|+++..+..++.
T Consensus 68 ~a~~~~~~g~~vi~~~~~~~~~~~~~ 93 (175)
T PRK00889 68 VANLLTRHGVIVLVSAISPYRETREE 93 (175)
T ss_pred HHHHHHhCCCEEEEecCCCCHHHHHH
Confidence 55556678999999998765444433
No 36
>PRK06761 hypothetical protein; Provisional
Probab=98.92 E-value=6.6e-09 Score=106.05 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=91.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCce-EEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA-VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~a-v~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+.+|++.|+|||||||+++.|++.+... +-++ .+.++|.....| +.+........+. .. -+.....+..+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~--g~~v~~~~~~~~~~p~d-----~~~~~~~~~eer~-~~-l~~~~~f~~~l 73 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN--GIEVELYLEGNLDHPAD-----YDGVACFTKEEFD-RL-LSNYPDFKEVL 73 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC--ceEEEEEecCCCCCchh-----hccccCCCHHHHH-HH-HHhhhHHHHHH
Confidence 5689999999999999999999988421 1111 234444433332 2221111111111 11 11222223457
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
.+.++..|.+||+-..-..+++|+.+.
T Consensus 74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~----------------------------------------------------- 100 (282)
T PRK06761 74 LKNVLKKGDYYLLPYRKIKNEFGDQFS----------------------------------------------------- 100 (282)
T ss_pred HHHHHHcCCeEEEEehhhhHHHhhhhh-----------------------------------------------------
Confidence 778888899988877766666665542
Q ss_pred ceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCCCCC
Q 010176 371 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGG 436 (516)
Q Consensus 371 y~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~~~~ 436 (516)
++++++.|+. -||.+|.+.+.++|.+...+|.+...+.|.+.+|||+....
T Consensus 101 ----------~~~~~~~~v~-----~~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~~~ 151 (282)
T PRK06761 101 ----------DELFNDISKN-----DIYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFIQN 151 (282)
T ss_pred ----------hhhcccceee-----eeecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCcCC
Confidence 1111111111 17888888999999999999999999999999999876543
No 37
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.91 E-value=1e-08 Score=114.05 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=70.7
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~ 286 (516)
...++|.+|+|+|+|||||||+++.|++.++. ..+..+.++|.|.+ ++.+.+.. .++.+. ....+..
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~v------r~~l~ge~-----~f~~~e-r~~~~~~ 453 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVV------RKHLSSEL-----GFSKED-RDLNILR 453 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHH------HHhccCCC-----CCCHHH-HHHHHHH
Confidence 35678999999999999999999999998853 01223688965544 55565521 122222 2333343
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHH
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lA 320 (516)
+...+...++.|..||+|+++..+..|+..++++
T Consensus 454 l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~ll 487 (568)
T PRK05537 454 IGFVASEITKNGGIAICAPIAPYRATRREVREMI 487 (568)
T ss_pred HHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHH
Confidence 4446778889999999999999988887776664
No 38
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.89 E-value=2.3e-08 Score=94.07 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..+|.+|++.|+|||||||+++.|...+.. ...+.++++.|.+ ++.+...+. +. .. .........
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~~d~~------r~~~~~~~~--~~----~~-~~~~~~~~~ 68 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLDGDEL------REILGHYGY--DK----QS-RIEMALKRA 68 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEecHHH------HhhcCCCCC--CH----HH-HHHHHHHHH
Confidence 357889999999999999999999988731 1235688865554 332322111 11 01 011112222
Q ss_pred HHHHHHHhCCCcEEEeCCCC
Q 010176 289 SLLVTALNEGRDVIMDGTLS 308 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs 308 (516)
.+.......|..||+|++..
T Consensus 69 ~l~~~l~~~g~~VI~~~~~~ 88 (176)
T PRK05541 69 KLAKFLADQGMIVIVTTISM 88 (176)
T ss_pred HHHHHHHhCCCEEEEEeCCc
Confidence 34444557899999998874
No 39
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.88 E-value=1.5e-08 Score=103.00 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=82.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
||+|+|.|||||||+++.|.+.+.- .....++++-|.+. +... . |.....-..+...+.+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~--~~~~v~~i~~~~~~--------~~~~----~--y~~~~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE--KGKEVVIISDDSLG--------IDRN----D--YADSKKEKEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH--TT--EEEE-THHHH---------TTS----S--S--GGGHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCEEEEEcccccc--------cchh----h--hhchhhhHHHHHHHHHHHHH
Confidence 7899999999999999999987531 12345677433332 1110 0 11111011222345568888
Q ss_pred HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 373 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I 373 (516)
+|....-||+|+.|--+++|-.+..+|+..+ ...
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~----------------------------------------------~~~ 100 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARAYG----------------------------------------------TTF 100 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-----------------------------------------------EE
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHHcC----------------------------------------------CCE
Confidence 9999999999999999999999988887642 223
Q ss_pred EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176 374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF 416 (516)
Q Consensus 374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~ 416 (516)
-+|+|.|+.+.|+.|-..|... ..++.+.+.++..||-.+-
T Consensus 101 c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P~ 141 (270)
T PF08433_consen 101 CVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEPD 141 (270)
T ss_dssp EEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---TT
T ss_pred EEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCCC
Confidence 4589999999999999888642 3389999988888888653
No 40
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.9e-08 Score=95.71 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=59.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~ 286 (516)
...+|.+|.++|+|||||||+|.+|.+.+.. .+....++|.|.+|. .|... +.+.. - ..+-.+.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~--~G~~~y~LDGDnvR~------gL~~dLgFs~e------d-R~eniRR 83 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFA--KGYHVYLLDGDNVRH------GLNRDLGFSRE------D-RIENIRR 83 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHH--cCCeEEEecChhHhh------cccCCCCCChH------H-HHHHHHH
Confidence 3467899999999999999999999998853 244678897777654 35532 33211 1 2233344
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHH
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVE 314 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~ 314 (516)
....+.-...+|.-||+-..-.-++.|+
T Consensus 84 vaevAkll~daG~iviva~ISP~r~~R~ 111 (197)
T COG0529 84 VAEVAKLLADAGLIVIVAFISPYREDRQ 111 (197)
T ss_pred HHHHHHHHHHCCeEEEEEeeCccHHHHH
Confidence 4557777888887777654333333333
No 41
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.85 E-value=2.9e-08 Score=89.27 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=76.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
+|+|+|+|||||||+++.|++.++ ..+++.|.+.... ....... ... .......+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~-------~~~~~~~~i~~e~--~~~~~~~--~~~--------~~~i~~~l~~~~~~ 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-------LPYLDTGGIRTEE--VGKLASE--VAA--------IPEVRKALDERQRE 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-------CceeccccCCHHH--HHHHHHH--hcc--------cHhHHHHHHHHHHH
Confidence 478999999999999999999984 4789888553221 1111110 000 01111222223333
Q ss_pred HHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceE
Q 010176 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 373 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I 373 (516)
+..+.++|+|+.... |.+ .+ .. .
T Consensus 62 -~~~~~~~Vidg~~~~------------------------~~~-------------~~------------------~~-~ 84 (147)
T cd02020 62 -LAKKPGIVLEGRDIG------------------------TVV-------------FP------------------DA-D 84 (147)
T ss_pred -HhhCCCEEEEeeeee------------------------eEE-------------cC------------------CC-C
Confidence 444568999987642 110 00 01 2
Q ss_pred EEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHH
Q 010176 374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFAN 414 (516)
Q Consensus 374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~ 414 (516)
.+|++.+|+++.+.|+..|...+++.++.+...+.++....
T Consensus 85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~ 125 (147)
T cd02020 85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDE 125 (147)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34888999999999999999776778887776665555533
No 42
>PRK01184 hypothetical protein; Provisional
Probab=98.83 E-value=2.2e-07 Score=87.89 Aligned_cols=30 Identities=30% Similarity=0.247 Sum_probs=24.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.+|+|+|+|||||||+++ ++++++ ..++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g-------~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG-------IPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC-------CcEEEh
Confidence 478999999999999987 677774 477855
No 43
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.81 E-value=9e-09 Score=101.12 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=92.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
.++.+|.|+|+|||||||+++.|...++. ..+++|.-|.+-+.+..+..- ..+.. + -..++... .+++.+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~----~~~~~I~~D~YYk~~~~~~~~-~~~~~-n-~d~p~A~D---~dLl~~ 75 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV----EKVVVISLDDYYKDQSHLPFE-ERNKI-N-YDHPEAFD---LDLLIE 75 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc----CcceEeeccccccchhhcCHh-hcCCc-C-ccChhhhc---HHHHHH
Confidence 56799999999999999999999999852 256788667665432111110 00000 0 00111100 111222
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccC-CCcccccchhhccccchhhhhhhhhccccC
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNE-DGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~-~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
.+. .|.+|..|.+- .++-.. |.... +-..+.. +=.++|++.-..++ ..+
T Consensus 76 ~L~-~L~~g~~v~~P-~yd~~~------------~~r~~---~~i~~~p~~VVIvEGi~~l~d~-------------~lr 125 (218)
T COG0572 76 HLK-DLKQGKPVDLP-VYDYKT------------HTREP---ETIKVEPNDVVIVEGILLLYDE-------------RLR 125 (218)
T ss_pred HHH-HHHcCCccccc-ccchhc------------ccccC---CccccCCCcEEEEecccccccH-------------HHH
Confidence 333 34566663321 111100 00000 0000000 00123444333221 244
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhh-hcCcccc-hhh-----hHhHHHHHHHhHHHhhccC
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR-VNS-----QLKSHKRFANAFRNYCELV 423 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~-~gGr~Vp-~~~-----ql~s~~rf~~~~~~y~~lv 423 (516)
.-+.++ |||++|.+++..|.+.|.. +.||.++ +-. ..++|..|.+...+|.+++
T Consensus 126 ~~~d~k-Ifvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADii 186 (218)
T COG0572 126 DLMDLK-IFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADII 186 (218)
T ss_pred hhcCEE-EEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEE
Confidence 456666 8999999999999999987 6899888 222 3567788888777776554
No 44
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.80 E-value=1.6e-07 Score=91.46 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=28.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
-|+|.|+|||||||+++.|++.++ +.+|+.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~-------~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG-------IPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEECCcc
Confidence 378899999999999999999984 589976544
No 45
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.80 E-value=4.1e-07 Score=85.97 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|+|.|+|||||||+++.|++.+ +..+|+.|++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-------~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-------GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-------CCeEEECcHH
Confidence 7889999999999999999998 4588977654
No 46
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.80 E-value=1.2e-07 Score=91.96 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=26.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|+|.|+|||||||+++.|++.+ ++.+|++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-------g~~~is~gd 32 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-------GLPHISTGD 32 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-------CCCeeehhH
Confidence 6789999999999999999988 458896643
No 47
>PRK06547 hypothetical protein; Provisional
Probab=98.80 E-value=6e-08 Score=92.18 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
....|.+|+|.|+|||||||+++.|++.+ +..+++.|.+.
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~-------~~~~~~~d~~~ 50 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART-------GFQLVHLDDLY 50 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh-------CCCeeccccee
Confidence 45678999999999999999999999987 45788777664
No 48
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.78 E-value=3.6e-07 Score=94.11 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=66.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc-------hH-------HHHHHhcC-C-CCCh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET-------DV-------IYRALSSK-G-HHDD 271 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s-------D~-------irk~L~~~-~-~~~~ 271 (516)
..+.|.+|+++|+|||||||+|..|+..++. ..+|+.|.+++. |. .|..+... . ..++
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~------~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~ 161 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGI------RSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPE 161 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCc
Confidence 4468999999999999999999999999954 257888888721 10 11111100 0 0011
Q ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHH
Q 010176 272 M--LQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE 314 (516)
Q Consensus 272 ~--~y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~ 314 (516)
. ++.=....+.+...+...+.+++.+|.++|+||....|.+..
T Consensus 162 ~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~ 206 (301)
T PRK04220 162 PPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK 206 (301)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH
Confidence 1 110011122233446789999999999999999999987644
No 49
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.72 E-value=2.6e-07 Score=96.76 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=94.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----c------hHHHHH----Hhc--------CCCC-
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----T------DVIYRA----LSS--------KGHH- 269 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----s------D~irk~----L~~--------~~~~- 269 (516)
|.++.|+|||||||+++.|...+.. ..+-.+.+++.|++-. . ..++|. +.. .+.+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4678999999999999999876631 0123567899998651 0 112221 111 0000
Q ss_pred ---ChhhHHHHHHHHHHHH-----------------HHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhccc
Q 010176 270 ---DDMLQTAELVHQSSTD-----------------AASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYR 329 (516)
Q Consensus 270 ---~~~~y~~e~v~~~~~~-----------------~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~ 329 (516)
+.+..+ +.+...... ....++...++.+.-||+|++|..+++|..+..+|+...
T Consensus 80 ~~~~~~~~~-~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~----- 153 (340)
T TIGR03575 80 ELSAPPGKT-EGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYS----- 153 (340)
T ss_pred cccCCcccc-hhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhC-----
Confidence 000000 011111111 123455667777888999999999999999988886531
Q ss_pred ccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHH
Q 010176 330 MGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSH 409 (516)
Q Consensus 330 ~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~ 409 (516)
..+.++++.||++++..|...|. +.+|.+.+..++
T Consensus 154 -----------------------------------------~~~~~V~ld~ple~~l~RN~~R~----~~v~devie~m~ 188 (340)
T TIGR03575 154 -----------------------------------------LGFCQLFLDCPVESCLLRNKQRP----VPLPDETIQLMG 188 (340)
T ss_pred -----------------------------------------CCEEEEEEeCCHHHHHHHHhcCC----CCCCHHHHHHHH
Confidence 12456899999999999998884 678888877777
Q ss_pred HHHHH
Q 010176 410 KRFAN 414 (516)
Q Consensus 410 ~rf~~ 414 (516)
.+|-.
T Consensus 189 ~r~E~ 193 (340)
T TIGR03575 189 RKIEK 193 (340)
T ss_pred HHhcC
Confidence 66664
No 50
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.68 E-value=5.9e-07 Score=81.64 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=28.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
|++.|+|||||||+++.|++.+++ .++++|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~-------~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL-------PFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence 688999999999999999999854 789777653
No 51
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.67 E-value=2.3e-07 Score=87.33 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=48.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCC-ChhhHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHH-DDMLQTAELVHQSSTDAASSLL 291 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~-~~~~y~~e~v~~~~~~~a~~la 291 (516)
.|.++|+|||||||+++.|++.++ ..++++ -.+|+++... +.+ .++...++. +...-....+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-------l~~vsa------G~iFR~~A~e~gmsl~ef~~~AE~-~p~iD~~iD~rq 67 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-------LKLVSA------GTIFREMARERGMSLEEFSRYAEE-DPEIDKEIDRRQ 67 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-------Cceeec------cHHHHHHHHHcCCCHHHHHHHHhc-CchhhHHHHHHH
Confidence 588999999999999999999995 478843 3344444432 211 122222222 223323333344
Q ss_pred HHHHhCCCcEEEeCCCC
Q 010176 292 VTALNEGRDVIMDGTLS 308 (516)
Q Consensus 292 ~~aL~~G~sVIvDaTfs 308 (516)
..... ..|||+|+-+.
T Consensus 68 ~e~a~-~~nvVlegrLA 83 (179)
T COG1102 68 KELAK-EGNVVLEGRLA 83 (179)
T ss_pred HHHHH-cCCeEEhhhhH
Confidence 44444 77999997764
No 52
>PRK14530 adenylate kinase; Provisional
Probab=98.67 E-value=9.5e-07 Score=86.05 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=28.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|. |+|.|+|||||||+++.|++.++ ..+|+.+++
T Consensus 3 ~~~-I~i~G~pGsGKsT~~~~La~~~~-------~~~i~~g~~ 37 (215)
T PRK14530 3 QPR-ILLLGAPGAGKGTQSSNLAEEFG-------VEHVTTGDA 37 (215)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHhC-------CeEEeccHH
Confidence 344 67789999999999999999984 488866554
No 53
>PRK07261 topology modulation protein; Provisional
Probab=98.67 E-value=9.8e-08 Score=90.26 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=66.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 294 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~a 294 (516)
|+|.|+|||||||+++.|+..++ ..+++.|.+.-... . ... + .++ ..+.+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~-------~~~i~~D~~~~~~~----~--~~~--~--------~~~----~~~~~~~~ 55 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN-------CPVLHLDTLHFQPN----W--QER--D--------DDD----MIADISNF 55 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCeEecCCEEeccc----c--ccC--C--------HHH----HHHHHHHH
Confidence 78899999999999999998873 46787777642100 0 000 0 111 12245556
Q ss_pred HhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCceEE
Q 010176 295 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 374 (516)
Q Consensus 295 L~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy~I~ 374 (516)
+.++. +|+|++++...+... ++.+ . .
T Consensus 56 ~~~~~-wIidg~~~~~~~~~~----------------------------------l~~a------------------d-~ 81 (171)
T PRK07261 56 LLKHD-WIIDGNYSWCLYEER----------------------------------MQEA------------------D-Q 81 (171)
T ss_pred HhCCC-EEEcCcchhhhHHHH----------------------------------HHHC------------------C-E
Confidence 66665 999999975321111 1111 1 2
Q ss_pred EEEEecCHHHHHHHHHHhhhh-cCc
Q 010176 375 LVGVVCDAYLAVVRGIRRAIM-MKR 398 (516)
Q Consensus 375 li~V~~d~elav~R~~~R~~~-gGr 398 (516)
++++++|-++++.|+++|... .|+
T Consensus 82 vI~Ld~p~~~~~~R~lkR~~~~rg~ 106 (171)
T PRK07261 82 IIFLNFSRFNCLYRAFKRYLKYRGK 106 (171)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 588999999999999999875 454
No 54
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.66 E-value=1.2e-06 Score=80.89 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+|.+|++.|+|||||||+++.|++.++ ..++|.|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~-------~~~~d~d~~~ 39 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-------YDFIDTDHLI 39 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence 4578999999999999999999999984 4788776653
No 55
>PRK13946 shikimate kinase; Provisional
Probab=98.66 E-value=8.1e-07 Score=84.69 Aligned_cols=39 Identities=28% Similarity=0.247 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+...+..|++.|+|||||||+++.|++.+++ .++|+|.+
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~-------~~id~D~~ 44 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGL-------PFLDADTE 44 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeECcCHH
Confidence 3446788999999999999999999999954 78977753
No 56
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.66 E-value=3.3e-07 Score=84.78 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=27.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+|+|.|++||||||+++.|++.++ ..+++.|+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-------~~~~~~~~ 33 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-------LKLISAGD 33 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CceecHHH
Confidence 689999999999999999999884 47896543
No 57
>PRK04182 cytidylate kinase; Provisional
Probab=98.65 E-value=7.7e-07 Score=82.84 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+|+|.|+|||||||+++.|++.++ ..++|.|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg-------~~~id~~~ 33 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG-------LKHVSAGE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CcEecHHH
Confidence 689999999999999999999984 47887544
No 58
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.61 E-value=8.1e-07 Score=84.62 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..++++.|||||||||+++.|+..++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999988763
No 59
>PRK13947 shikimate kinase; Provisional
Probab=98.60 E-value=1.8e-06 Score=80.29 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=29.1
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
|++.|+|||||||+++.|++.+++ .++|.|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~-------~~id~d~~~ 36 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSF-------GFIDTDKEI 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-------CEEECchhh
Confidence 788999999999999999999955 789888754
No 60
>PRK06217 hypothetical protein; Validated
Probab=98.59 E-value=2.2e-07 Score=88.35 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
-|+|.|+|||||||+++.|++.++ ..+++.|.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~-------~~~~~~D~~~~ 37 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD-------IPHLDTDDYFW 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CcEEEcCceee
Confidence 488999999999999999999984 47898887753
No 61
>PRK14528 adenylate kinase; Provisional
Probab=98.58 E-value=6.4e-07 Score=85.73 Aligned_cols=44 Identities=11% Similarity=-0.014 Sum_probs=33.1
Q ss_pred EEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhHHH
Q 010176 375 LVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFRN 418 (516)
Q Consensus 375 li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~~~ 418 (516)
+|.++||+++++.|...|....||.-. ++.+.++...|......
T Consensus 111 vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p 155 (186)
T PRK14528 111 AINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP 155 (186)
T ss_pred EEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence 477899999999999999988788643 66676666655555543
No 62
>PRK02496 adk adenylate kinase; Provisional
Probab=98.57 E-value=1.4e-06 Score=82.49 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.5
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
++|.|+|||||||+++.|++.++ ..+++.|++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~-------~~~i~~~~~ 35 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH-------IPHISTGDI 35 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CcEEEhHHH
Confidence 77889999999999999999884 478855443
No 63
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.57 E-value=3.3e-07 Score=88.59 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=30.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.++|++||||||+++.|.+.+ |+.++|+|.+.+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~-------g~~~i~~D~~~~ 37 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK-------GIPILDADIYAR 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-------CCeEeeCcHHHH
Confidence 68999999999999999999876 458999998853
No 64
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.56 E-value=1.2e-06 Score=84.40 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+.+|.++|++||||||+++.|.+ + ++.+||+|.+.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-------g~~~i~~D~~~~ 37 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-------GAPVIDADAIAH 37 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEecHHHH
Confidence 46899999999999999999987 6 458999998853
No 65
>PTZ00301 uridine kinase; Provisional
Probab=98.56 E-value=1.9e-07 Score=91.62 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCc-eEEEeCcccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAFKET 256 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~-av~IdaD~ir~s 256 (516)
.+|.|+|+|||||||+|+.|.+.+.- ..++. +.++.-|.|-..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~-~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMA-HCGPVSIGVICEDFYYRD 47 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHh-hcCCCeEEEeCCCCCccC
Confidence 68999999999999999998776510 00122 347766766543
No 66
>PRK15453 phosphoribulokinase; Provisional
Probab=98.55 E-value=5e-07 Score=92.24 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=36.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 257 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD 257 (516)
+++.+|.|+|.|||||||+++.|++.+.. ...++.+|+.|.|.+.|
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~--~~~~~~vi~~D~yh~yd 48 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR--ENINAAVVEGDSFHRYT 48 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeEEEecccccccC
Confidence 45678999999999999999999977632 12357899999987643
No 67
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.55 E-value=1.6e-06 Score=98.35 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=94.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-ChhhHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-~~~~y~~e~v~~~~~~~a~~ 289 (516)
...+++|.|.||+||||+++.|++.+.| ..+++|.| ..+..++.+.+.... .++......-.+.....+..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~-------~~~~~~~~-~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d 285 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQW-------NGLQSRIF-IHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHD 285 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHh-------cCCCcEEE-ccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999876 23344444 333444445422111 01111111112222222223
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 369 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~ 369 (516)
+..-.++.|..+|+|+|......|..+.+..++.. ...
T Consensus 286 ~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~------------------------------------------~~~ 323 (664)
T PTZ00322 286 MTTFICKTDGVAVLDGTNTTHARRMALLRAIRETG------------------------------------------LIR 323 (664)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHcC------------------------------------------CCc
Confidence 44445667889999999999877777666654320 222
Q ss_pred CceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhc
Q 010176 370 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE 421 (516)
Q Consensus 370 gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~ 421 (516)
|..|.++-+.|+....+.|.+.|......+.+++...+.++++...-..|..
T Consensus 324 ~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~Ye~ 375 (664)
T PTZ00322 324 MTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAVYKS 375 (664)
T ss_pred cCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 4557677777877777888888876555555554444444444444444443
No 68
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.55 E-value=1.9e-07 Score=81.83 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=28.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|+|.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-------~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-------FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-------CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-------CeEEEecce
Confidence 589999999999999999999984 488877774
No 69
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.54 E-value=1.3e-06 Score=85.16 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=31.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.|.+|.++|++||||||+++.|.+ + |+.++|+|.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-------g~~v~d~D~i~ 39 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-------GCELFEADRVA 39 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeccHHH
Confidence 4578999999999999999999986 5 45899999764
No 70
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=1.7e-06 Score=86.64 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=88.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-C----------------CC-
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G----------------HH- 269 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~----------------~~- 269 (516)
.++.|.+|++||+||.||||+|..++.+++. -.+|.+|.+|+- .|+-+.+. . .+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI------~~visTD~IREv--lR~ii~~~l~PtLh~Ssy~Awkalr~~~~ 156 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGI------RSVISTDSIREV--LRKIISPELLPTLHTSSYDAWKALRDPTD 156 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCC------ceeecchHHHHH--HHHhCCHHhcchhhHhHHHHHHHhcCCCC
Confidence 5678999999999999999999999999976 267877777642 33332211 0 00
Q ss_pred ChhhHHHHHHH-HHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh
Q 010176 270 DDMLQTAELVH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE 348 (516)
Q Consensus 270 ~~~~y~~e~v~-~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~ 348 (516)
..+.-+.-.-| +.+.-.....+++|+++|.|+|+|++..-|.+.+
T Consensus 157 ~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~---------------------------------- 202 (299)
T COG2074 157 ENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIK---------------------------------- 202 (299)
T ss_pred CcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeecccccc----------------------------------
Confidence 01111111111 2233446789999999999999999998663211
Q ss_pred hccccchhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccch
Q 010176 349 QVKEGEEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV 402 (516)
Q Consensus 349 ~v~~a~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~ 402 (516)
+. .. ++.+.+++|. .|+++...|.-.|...+-..=|-
T Consensus 203 ---~~-------------~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~ 240 (299)
T COG2074 203 ---EE-------------AL-GNNVFMFMLYIADEELHRERFYDRIRYTHASRPG 240 (299)
T ss_pred ---Hh-------------hh-ccceEEEEEEeCCHHHHHHHHHHHHHHHhccCch
Confidence 11 11 3335555554 69999999999999776443343
No 71
>PRK04040 adenylate kinase; Provisional
Probab=98.53 E-value=1.1e-06 Score=84.65 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|.+|++.|+|||||||+++.|++.+. .+..+++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchH
Confidence 78999999999999999999999882 14567766554
No 72
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.52 E-value=5.3e-06 Score=82.21 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-----ChhhHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQSS 283 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-----~~~~y~~e~v~~~~ 283 (516)
...+.+|+|.|+||.|||++|+.|..-+.|. +-.+.++|..++ |+.+.+.... +....+... .++.
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~--g~~~~vFn~g~y------RR~~~~~~~~~~ff~p~n~~~~~~-R~~~ 79 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWL--GVKTKVFNVGDY------RRKLSGAPQDAEFFDPDNEEAKKL-REQI 79 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHT--T--EEEEEHHHH------HHHHHSS-S-GGGGSTT-HHHHHH-HHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc--CCCcceeecccc------eecccccccccccCCCCChHHHHH-HHHH
Confidence 4568899999999999999999999888773 234566644444 3334443111 111122222 4554
Q ss_pred HHHH-HHHHHHHH-hCCCcEEEeCCCCChHHHHHHHHHH
Q 010176 284 TDAA-SSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMA 320 (516)
Q Consensus 284 ~~~a-~~la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lA 320 (516)
...+ ..++.-.. ..|.--|+|||.++.+.|..+.+..
T Consensus 80 a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~ 118 (222)
T PF01591_consen 80 AKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERF 118 (222)
T ss_dssp HHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4433 44444444 3677889999999999998877664
No 73
>PRK13948 shikimate kinase; Provisional
Probab=98.51 E-value=2.2e-06 Score=82.39 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+.|..|++.|+|||||||+++.|++.+++ .+||+|.+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D~~i 45 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTDRYI 45 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECCHHH
Confidence 456899999999999999999999999954 789888553
No 74
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.49 E-value=5.8e-06 Score=77.16 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=28.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|++.|+|||||||+++.|++.+++ .++|.|.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~-------~~~d~D~~~ 37 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY-------RFVDTDQWL 37 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEccHHH
Confidence 4777899999999999999999854 789776654
No 75
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.49 E-value=7.9e-07 Score=84.76 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=29.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.++|++||||||+++.|.+.. ++.++|+|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHHH
Confidence 37899999999999999998875 35899999885
No 76
>PRK03839 putative kinase; Provisional
Probab=98.49 E-value=3.3e-07 Score=86.44 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=29.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|++.|+|||||||+++.|++.++ ..++|.|++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~-------~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG-------YEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhhhh
Confidence 488899999999999999999984 4889877653
No 77
>PRK08233 hypothetical protein; Provisional
Probab=98.48 E-value=2.2e-06 Score=80.02 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
++.+|.|.|+|||||||+++.|++.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999999884
No 78
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.48 E-value=1.8e-06 Score=83.80 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+|.++|++||||||+++.|.. . |+.+||+|.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-------g~~vid~D~i~ 35 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-------GFLIVDADQVA 35 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeCcHHH
Confidence 3689999999999999999986 4 45899999763
No 79
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.48 E-value=6.5e-07 Score=86.09 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=24.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..|.+|+|+|||||||||+++.|.++.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999998875
No 80
>PRK13973 thymidylate kinase; Provisional
Probab=98.47 E-value=2.3e-05 Score=76.60 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCC-CCChhhHHHHHHHHH-HHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG-HHDDMLQTAELVHQS-STDAA 287 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~-~~~~~~y~~e~v~~~-~~~~a 287 (516)
++.+|++-|+.||||||.++.|++.+.- .+..++.. +|+.-.-.+.+|+.+.+.. ...++ ++....+.. -.+.+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~--~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~-~~~~ll~~a~r~~~~ 78 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRA--AGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGP-RMEALLFAAARDDHV 78 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEECCCCCchHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHH
Confidence 3689999999999999999999998832 11122222 3332222445565555421 10011 111111111 11223
Q ss_pred HHHHHHHHhCCCcEEEeCCC
Q 010176 288 SSLLVTALNEGRDVIMDGTL 307 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTf 307 (516)
...+..+|+.|..||.|--+
T Consensus 79 ~~~i~~~l~~g~~Vi~DRy~ 98 (213)
T PRK13973 79 EEVIRPALARGKIVLCDRFI 98 (213)
T ss_pred HHHHHHHHHCCCEEEEcchh
Confidence 45688899999999999644
No 81
>PLN02348 phosphoribulokinase
Probab=98.47 E-value=2.2e-06 Score=91.17 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=37.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-------------CCceEEEeCcccccch
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFKETD 257 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-------------~~~av~IdaD~ir~sD 257 (516)
...|.+|.|+|+|||||||+++.|...++.... ...+.+|.-|+|...|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~d 107 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLD 107 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCC
Confidence 467999999999999999999999998842100 1245788889886544
No 82
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.47 E-value=2.5e-06 Score=82.70 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=28.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.++|++||||||+++.|.. . |..++|+|.+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~i~~ 34 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-L-------GAFGISADRLAK 34 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-C-------CCEEEecchHHH
Confidence 478999999999999998864 4 458999999853
No 83
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.46 E-value=2.1e-06 Score=83.02 Aligned_cols=42 Identities=29% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.+|.+|.|+|+|||||||+++.|...+. .....+|+.|.+-.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcccc
Confidence 4789999999999999999999999873 23567888888743
No 84
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=6e-06 Score=81.36 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=36.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEE-EeCcccccchHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VEADAFKETDVI 259 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~-IdaD~ir~sD~i 259 (516)
...+|.++.+.|+|||||||+++.|+..+... .....+ |.-|.+...+..
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~~~ 79 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDNAV 79 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCHHH
Confidence 45679999999999999999999999877421 122334 777887655444
No 85
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.45 E-value=2.6e-06 Score=80.11 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+++|.|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 86
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.45 E-value=8.4e-07 Score=90.04 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=32.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
+|.++|+|||||||+++.+.+.+.. .+..+.+|+.|.|.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~--~g~~v~vI~~D~yyr~ 41 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR--EGIHPAVVEGDSFHRY 41 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--cCCceEEEeccccccC
Confidence 4788999999999999999987732 1224689999998764
No 87
>PRK08356 hypothetical protein; Provisional
Probab=98.44 E-value=1.3e-05 Score=77.05 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+|+++|+|||||||+++.|. +.+ +.+|...+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g-------~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKG-------FCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC-------CcEEeCCC
Confidence 578999999999999999995 453 35665544
No 88
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.43 E-value=3.1e-05 Score=73.83 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.+|++.|++||||||+++.|.+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999876
No 89
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.43 E-value=2.1e-06 Score=83.95 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..|..|.++|++||||||+++.|.+.++ +.++|+|.+.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg-------~~vidaD~i~ 41 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN-------LNVVCADTIS 41 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC-------CeEEeccHHH
Confidence 4688999999999999999999998774 4789898874
No 90
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.43 E-value=2.5e-05 Score=73.36 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+|++.|++||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999887
No 91
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.43 E-value=6.2e-07 Score=86.18 Aligned_cols=86 Identities=26% Similarity=0.430 Sum_probs=55.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccc--------------cCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA 276 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~--------------~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~ 276 (516)
++.|+++.||||+||||+.+.|.+...+ ...+.++.+++.+ +++.+...+ ..++++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~-------EF~~~i~~~---~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEE-------EFEELIERD---EFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHH-------HHHHHHhcC---CcEEEE
Confidence 6889999999999999999999987633 1122234445333 344443331 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEeCCC
Q 010176 277 ELVHQSSTDAASSLLVTALNEGRDVIMDGTL 307 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~sVIvDaTf 307 (516)
+. +...|.....-++.+++.|.+||+|-.+
T Consensus 73 ~~-~gnyYGT~~~~ve~~~~~G~~vildId~ 102 (191)
T COG0194 73 EY-HGNYYGTSREPVEQALAEGKDVILDIDV 102 (191)
T ss_pred EE-cCCcccCcHHHHHHHHhcCCeEEEEEeh
Confidence 33 3334444556888999999999999655
No 92
>PRK13808 adenylate kinase; Provisional
Probab=98.42 E-value=1.3e-06 Score=91.15 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|+|.|||||||||+++.|++.+ +.++|+.+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y-------gl~~is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY-------GIVQLSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------CCceecccHH
Confidence 6779999999999999999998 4589976554
No 93
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.42 E-value=2.6e-06 Score=80.89 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=29.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.++|++||||||+++.|.+ + |+.+|++|.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~~~~ 34 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-------GIPVIDADKIAH 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-------CCCEEecCHHHH
Confidence 478999999999999999987 6 458999998753
No 94
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.41 E-value=5.7e-07 Score=84.40 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=22.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+|++.|||||||||+++.|+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999865
No 95
>PRK08118 topology modulation protein; Reviewed
Probab=98.38 E-value=1.8e-06 Score=81.50 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|+|.|+|||||||+|+.|++.++ ..+++.|.+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~-------~~~~~lD~l 35 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN-------IPVHHLDAL 35 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CCceecchh
Confidence 78889999999999999999984 467766654
No 96
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.38 E-value=1.2e-05 Score=79.36 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.+|.|.||+||||||+++.|++++++ .+++++.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~-------~~~~~g~~~ 37 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGY-------AYLDSGAMY 37 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC-------ceeeCchHH
Confidence 568999999999999999999999854 788776654
No 97
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.37 E-value=2.2e-06 Score=82.21 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=29.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCC--CceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAA--TNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~--~~av~IdaD~ir 254 (516)
+|.|+|+|||||||+|+.|...+.-.+.. ....++..|.+-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 58899999999999999999988421100 024567667664
No 98
>PRK00625 shikimate kinase; Provisional
Probab=98.36 E-value=2.2e-05 Score=74.86 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=29.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|++.|.|||||||+++.|++.++ ..++|.|.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~-------~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS-------LPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CCEEEhhHH
Confidence 488999999999999999999984 489988765
No 99
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.35 E-value=8.9e-06 Score=77.39 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+|++.|++||||||+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 100
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=2.6e-05 Score=74.88 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=84.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a 287 (516)
....|.+|++-|+|||||-|....+++.++| .+|.+. |.+|.+....+. +.
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~f-------tHlSaG-----dLLR~E~~~~gs--------e~--------- 54 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGF-------THLSAG-----DLLRAEIASAGS--------ER--------- 54 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCc-------eeecHH-----HHHHHHHccccC--------hH---------
Confidence 4567888888999999999999999999955 899443 334444433210 00
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~ 367 (516)
..++...+++|.-|=.+-|.+ .+.+--++.+.. .|| .|+.|...++.. ..+++...
T Consensus 55 g~~I~~~i~~G~iVP~ei~~~------LL~~am~~~~~~-----~~f-------LIDGyPR~~~q~------~~fe~~i~ 110 (195)
T KOG3079|consen 55 GALIKEIIKNGDLVPVEITLS------LLEEAMRSSGDS-----NGF-------LIDGYPRNVDQL------VEFERKIQ 110 (195)
T ss_pred HHHHHHHHHcCCcCcHHHHHH------HHHHHHHhcCCC-----CeE-------EecCCCCChHHH------HHHHHHhc
Confidence 124455555555444433321 000000010000 012 223344433332 22221111
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHHhH
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAF 416 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~~~ 416 (516)
..+ . -+++++|+.|.++.|+..|....+|... ++++.++.+-|..+-
T Consensus 111 ~~~-~-fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t 158 (195)
T KOG3079|consen 111 GDP-D-FVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKST 158 (195)
T ss_pred CCC-C-EEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcc
Confidence 111 1 2378899999999999999987666554 666666655555443
No 101
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.28 E-value=5e-06 Score=81.18 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=31.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+.+|.++|.+||||||+++.+.+ + |+.+||+|.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-------G~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-------GFPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-------CCeEEEccHHHH
Confidence 57899999999999999999998 6 458999999875
No 102
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.28 E-value=4.8e-06 Score=79.89 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=28.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.++|+.||||||+++.|.+ + |+.++|+|.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~-------G~~vidaD~i~ 34 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-L-------GFPVIDADEIA 34 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-T-------T-EEEEHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-C-------CCCEECccHHH
Confidence 688999999999999999987 5 56899999875
No 103
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.27 E-value=0.00014 Score=69.15 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=24.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+.+|++.|++||||||+++.|++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999884
No 104
>PLN02674 adenylate kinase
Probab=98.27 E-value=1.5e-05 Score=80.17 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=28.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.-|++.|+|||||||+++.|++.++ ..+|+++++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~-------~~his~Gdl 65 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 65 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-------CcEEchhHH
Confidence 44577899999999999999999984 488966443
No 105
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.26 E-value=9.1e-06 Score=81.61 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=31.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.+|.++|+.||||||+++.|.+.. |+.+||+|.+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-------G~~viDaD~iar 37 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-------HIEVIDADLVVR 37 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-------CCeEEehHHHHH
Confidence 368899999999999999999876 458999999853
No 106
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.25 E-value=1.8e-06 Score=75.47 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|+|+|+|||||||+++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 107
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.25 E-value=3.5e-05 Score=72.92 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+..|++.|+|||||||+++.|+..++ ..++|+|..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~-------~~~vd~D~~ 38 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE 38 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC-------CcEEECCch
Confidence 55689999999999999999999884 478988864
No 108
>PRK07667 uridine kinase; Provisional
Probab=98.24 E-value=1.2e-05 Score=77.49 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..+.+|.|+|+|||||||+++.|.+.+.- .+.+..+++.|.+-
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~--~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ--EGIPFHIFHIDDYI 57 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEEcCccc
Confidence 45589999999999999999999987731 12356788888864
No 109
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.24 E-value=2.2e-06 Score=81.73 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=32.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
+|.|+|+|||||||+++.|.+.+.. .+.+..+|+.|.|-..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~--~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV--NGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEehhhcccC
Confidence 5789999999999999999988731 1236788988877653
No 110
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.23 E-value=7.4e-06 Score=78.54 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=24.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+++.+|+|.|+|||||||+++.|+..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356899999999999999999999876
No 111
>PRK07429 phosphoribulokinase; Provisional
Probab=98.20 E-value=1.7e-05 Score=82.84 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=36.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 257 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD 257 (516)
...+|.+|.|+|+|||||||+++.|+..++. .+..++..|.+...+
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~----~~~~vi~~Dd~~~~~ 49 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGE----ELVTVICTDDYHSYD 49 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhcc----CceEEEEecccccCC
Confidence 4568999999999999999999999988742 234577788875433
No 112
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.20 E-value=3.7e-05 Score=79.52 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=31.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...++..|++.|+|||||||+++.|++.+++ .++|.|.
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~-------~~id~D~ 166 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGV-------PFVELNR 166 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEeHHH
Confidence 4567788999999999999999999999954 6785553
No 113
>PRK13949 shikimate kinase; Provisional
Probab=98.20 E-value=9.7e-05 Score=69.86 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=27.9
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|++.|+|||||||+++.|++.+++ .++|.|.+
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~-------~~id~D~~ 35 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGL-------SFIDLDFF 35 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-------CeecccHH
Confidence 788899999999999999999854 78977754
No 114
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.19 E-value=2.3e-05 Score=75.94 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=33.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
++.+.+|.|.|+|||||||+++.|...+.. .+..++..|.+-
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~----~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK----LEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc----cCCeEecccccc
Confidence 466789999999999999999999987631 245678777763
No 115
>PLN02422 dephospho-CoA kinase
Probab=98.18 E-value=2.7e-05 Score=77.72 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=29.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.++|++||||||+++.|. ++ |+.++|+|++.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~-------g~~~idaD~~~ 35 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SS-------GIPVVDADKVA 35 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HC-------CCeEEehhHHH
Confidence 68999999999999999998 45 45899999885
No 116
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.18 E-value=5.1e-05 Score=74.43 Aligned_cols=58 Identities=9% Similarity=-0.085 Sum_probs=34.6
Q ss_pred EEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176 375 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 432 (516)
Q Consensus 375 li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn 432 (516)
+|++++||+.+..|...|....-..++.+.+.+-+..+.+.+.......+.+.++|.|
T Consensus 146 ~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~ 203 (219)
T cd02030 146 VIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWT 203 (219)
T ss_pred EEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 4788999999999998886432223555544444555544443211223566677743
No 117
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.17 E-value=9.9e-06 Score=78.78 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=25.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.+.+|.+|++.|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4568999999999999999999999764
No 118
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.16 E-value=2.3e-05 Score=79.92 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=31.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 257 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD 257 (516)
++.|+|+|||||||+++.|...+.. .+..+|..|.+...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~----~~~~vi~~Dd~~~~~ 40 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS----DLVTVICLDDYHSLD 40 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC----CceEEEECcccccCC
Confidence 4778999999999999999987742 245678888886543
No 119
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.15 E-value=6.8e-06 Score=91.27 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..+.+|.|+|+|||||||+++.|+..+. ++.+|.-|.+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence 4578999999999999999999998762 45677777775
No 120
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.15 E-value=3.5e-05 Score=79.87 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cchH-----HHHHHhcCCCC------ChhhHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETDV-----IYRALSSKGHH------DDMLQT 275 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD~-----irk~L~~~~~~------~~~~y~ 275 (516)
.+|.+|+|+||+||||||++..|++.+ +..+|++|.+. .-|. --.++.+..|+ +...++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s 74 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYS 74 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhccc
Confidence 357899999999999999999999998 44789888842 1110 01111121111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEe
Q 010176 276 AELVHQSSTDAASSLLVTALNEGRDVIMD 304 (516)
Q Consensus 276 ~e~v~~~~~~~a~~la~~aL~~G~sVIvD 304 (516)
.. ...+.+...++.+++.|...|++
T Consensus 75 ~~----~f~~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 75 VA----DFQRDALAAIADILARGKLPILV 99 (307)
T ss_pred HH----HHHHHHHHHHHHHHhCCCCEEEE
Confidence 22 23344567888889999987775
No 121
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.14 E-value=3.2e-05 Score=74.07 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=30.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.|.|+|||||||+++.|...+. ...+.++..|.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence 478999999999999999998762 2356788888765
No 122
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.11 E-value=1.3e-05 Score=79.08 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=31.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
+|.|+|+|||||||+++.|+..+........+.+|.-|.+-..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~ 43 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP 43 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence 4778999999999999999987731001235678888887544
No 123
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.10 E-value=7e-05 Score=74.53 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|.-|++.|+|||||||+++.|++.++ ..+|+.|++-
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g-------~~~is~gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKEN-------LKHINMGNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-------CcEEECChHH
Confidence 355588899999999999999999984 5899777653
No 124
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.09 E-value=1.1e-05 Score=78.39 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.++-++|..||||||+++.+. .+ |..+||+|.+.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~-------G~~vIDaD~vaR 36 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-AL-------GIPVIDADVVAR 36 (225)
T ss_pred eEEEeecccccChHHHHHHHH-Hc-------CCcEecHHHHHH
Confidence 367889999999999999987 55 458999998764
No 125
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.08 E-value=2.3e-05 Score=74.63 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+++|++.|||||||||+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999999885
No 126
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.07 E-value=1.3e-05 Score=77.52 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=30.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.|+|+|||||||+++.|++.+. ++.+|+.|.|-.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~------~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP------NCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------CCeEEccccccC
Confidence 478999999999999999999872 468898888753
No 127
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00018 Score=68.76 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.9
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
|++.|+|||||||+.+.|++.+ +..++|.|..-
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L-------~~~F~D~D~~I 37 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKAL-------NLPFIDTDQEI 37 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHc-------CCCcccchHHH
Confidence 6778999999999999999999 45899888764
No 128
>PRK14526 adenylate kinase; Provisional
Probab=98.07 E-value=4.3e-05 Score=75.06 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|++.|+|||||||+++.|++.++ ..+|+++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~-------~~~is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN-------YYHISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CceeecChH
Confidence 67799999999999999999884 477865544
No 129
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.07 E-value=7.2e-05 Score=82.46 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.+|.|.|||||||||+++.|++.++ ..++|.|.+-+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~-------~~~~d~g~~YR 320 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG-------LLYLDTGAMYR 320 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEecCCceeh
Confidence 578899999999999999999999994 58998776644
No 130
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.05 E-value=0.00016 Score=71.65 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+.+|.+.|++||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~-------~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLG-------FHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCchh
Confidence 468899999999999999999999994 478876664
No 131
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.01 E-value=7.6e-05 Score=76.74 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
..+.+|+|+|+|||||||+++.|..
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999963
No 132
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.01 E-value=0.00031 Score=64.41 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.4
Q ss_pred EecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 217 i~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|.|||||||||+++.|++++ +.++|++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~-------~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-------GLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-------TSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-------CcceechHH
Confidence 46999999999999999998 458995533
No 133
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.00 E-value=0.00024 Score=67.23 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=36.5
Q ss_pred EEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecCC
Q 010176 376 VGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNA 433 (516)
Q Consensus 376 i~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn~ 433 (516)
+++++||+++..|...|.. ..-.....+..++++.+.+......-+++.+-|++.
T Consensus 123 ~~Ldv~pe~~~~R~~~r~~---~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~ 177 (186)
T PF02223_consen 123 FFLDVDPEEALKRIAKRGE---KDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASR 177 (186)
T ss_dssp EEEECCHHHHHHHHHHTSS---TTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS
T ss_pred EEEecCHHHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 7889999999999999986 222233334445555555554444557888888653
No 134
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.99 E-value=6.4e-05 Score=77.37 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=37.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR 261 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk 261 (516)
..+.|.+|.|+|+|||||||+++.|..-+......+.+.++..|.|......++
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~ 111 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLK 111 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHH
Confidence 346799999999999999999988866542101123467788888765433433
No 135
>PRK05439 pantothenate kinase; Provisional
Probab=97.98 E-value=0.00011 Score=76.36 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=37.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 257 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD 257 (516)
....|.+|.|+|+|||||||+++.|...+.....+..+.+|..|.|-...
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 45679999999999999999999998865311112357789888885443
No 136
>PRK13975 thymidylate kinase; Provisional
Probab=97.98 E-value=0.00024 Score=67.52 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+.+|++.|++||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999984
No 137
>PRK13974 thymidylate kinase; Provisional
Probab=97.97 E-value=0.00069 Score=66.13 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..+|++-|++||||||.++.|.+.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998874
No 138
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.92 E-value=0.00033 Score=77.02 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=28.6
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
|++.|+|||||||+++.|++.++ ..++|+|.+.
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg-------~~~id~D~~i 35 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLD-------LQFIDMDEEI 35 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-------CeEEECcHHH
Confidence 78899999999999999999984 4899777653
No 139
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00022 Score=68.36 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=27.8
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
|+|-|+|||||||+|+.|++.+ +..+|+.+++-
T Consensus 3 iiilG~pGaGK~T~A~~La~~~-------~i~hlstgd~~ 35 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL-------GLPHLDTGDIL 35 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------CCcEEcHhHHh
Confidence 6778999999999999999998 45899765553
No 140
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.91 E-value=0.00023 Score=80.98 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..|.+-||+||||||+++.|++++++ .++|+|.+-+.
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~-------~~~~~~~~~~~ 479 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGY-------HYLDSGALYRL 479 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCC-------eEecHHHhhhH
Confidence 36888999999999999999999954 88966665443
No 141
>PLN02459 probable adenylate kinase
Probab=97.88 E-value=0.00036 Score=70.86 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+|.-|++.|+|||||||+++.|++.++ ..+|++.+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~-------~~~is~gd 62 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG-------VPHIATGD 62 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeCcH
Confidence 345577789999999999999999984 48885544
No 142
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.84 E-value=0.00076 Score=62.72 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 221 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 221 sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|||||||+++.|++.+++ .++|.|.+
T Consensus 1 ~GsGKStvg~~lA~~L~~-------~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR-------PFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS-------EEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCC-------CccccCHH
Confidence 799999999999999965 89977765
No 143
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.81 E-value=0.00017 Score=77.15 Aligned_cols=34 Identities=44% Similarity=0.635 Sum_probs=29.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.|.++|++||||||+++.|++ + |+.+||+|.+.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~-------G~~vidaD~i~~ 36 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-L-------GAVVVDADVLAR 36 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-------CCeEEehHHHHH
Confidence 488999999999999999986 5 458999998854
No 144
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.81 E-value=0.0008 Score=74.92 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|++.|.|||||||+++.|++.+++ .+||.|..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~-------~fiD~D~~ 40 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRL-------PFADADVE 40 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCC-------CEEEchHH
Confidence 44666799999999999999999965 79988864
No 145
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.79 E-value=3.8e-05 Score=72.93 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++++|++.||+||||||+++.|.+.+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999999876
No 146
>PLN02924 thymidylate kinase
Probab=97.79 E-value=0.00064 Score=67.25 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=52.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe-Ccc-cccchHHHHHHhcCCCCCh----hhHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADA-FKETDVIYRALSSKGHHDD----MLQTAELVHQ 281 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id-aD~-ir~sD~irk~L~~~~~~~~----~~y~~e~v~~ 281 (516)
+++++.+|++.|+.||||||+++.|.+.+... +..++++. ++. -.-...+++-+.+...... ..+++.+ .+
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~--g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR-~~ 88 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGL--GVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANR-WE 88 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HH
Confidence 45678899999999999999999999988531 11222221 110 0001124444433211111 1122222 11
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCC
Q 010176 282 SSTDAASSLLVTALNEGRDVIMDGTL 307 (516)
Q Consensus 282 ~~~~~a~~la~~aL~~G~sVIvDaTf 307 (516)
. ...+..+|+.|..||.|--+
T Consensus 89 ~-----~~~I~pal~~g~vVI~DRy~ 109 (220)
T PLN02924 89 K-----RSLMERKLKSGTTLVVDRYS 109 (220)
T ss_pred H-----HHHHHHHHHCCCEEEEccch
Confidence 1 24688899999999999654
No 147
>PRK14529 adenylate kinase; Provisional
Probab=97.78 E-value=0.00014 Score=72.27 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~ 238 (516)
|+|.|+|||||||+++.|++.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 677999999999999999999843
No 148
>PRK07933 thymidylate kinase; Validated
Probab=97.76 E-value=0.0023 Score=62.75 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=49.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eC--cccccchHHHHHHhcC-CCCChhhHHHHHHHHHH-HHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EA--DAFKETDVIYRALSSK-GHHDDMLQTAELVHQSS-TDAA 287 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-da--D~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~-~~~a 287 (516)
.+|.+-|+-||||||+++.|.+.+... +..++++ .| +.-.-.+.+++.+.+. +......++....+... ...+
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~--g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~ 78 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEAR--GRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGAR 78 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence 378999999999999999999988431 1222322 22 1111124466656542 11000011111101100 0111
Q ss_pred HHHHHHHHhCCCcEEEeCCCC
Q 010176 288 SSLLVTALNEGRDVIMDGTLS 308 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs 308 (516)
..+..+|+.|..||.|-.+.
T Consensus 79 -~~I~p~l~~g~~VI~DRy~~ 98 (213)
T PRK07933 79 -DELAGLLAAHDVVILDRYVA 98 (213)
T ss_pred -HHHHHHHhCCCEEEECCccc
Confidence 34677889999999996554
No 149
>PLN02772 guanylate kinase
Probab=97.71 E-value=0.00036 Score=74.49 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccc--------------cC--CCCceEEEeCcccccchHHHHHHhcCCCCChhhH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SG--AATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 274 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~--------------~~--~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y 274 (516)
..++++++||||+||||+.+.|.+.... ++ .+.++.++ +...+..+...+ .+++
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-------s~eeFe~~i~~g---~FlE 203 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-------ERSVMEKEIKDG---KFLE 203 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-------CHHHHHHHHHhC---ccce
Confidence 5579999999999999999999886521 00 01112222 112222222211 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176 275 TAELVHQSSTDAASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 275 ~~e~v~~~~~~~a~~la~~aL~~G~sVIvDa 305 (516)
..+. +...|....+.++..+++|+.+|+|-
T Consensus 204 ~~e~-~Gn~YGTsk~~V~~vl~~Gk~vILdL 233 (398)
T PLN02772 204 FASV-HGNLYGTSIEAVEVVTDSGKRCILDI 233 (398)
T ss_pred eeee-cCccccccHHHHHHHHHhCCcEEEeC
Confidence 2222 44455555668889999999999993
No 150
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.67 E-value=0.00074 Score=77.47 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=29.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.|.|.|||||||||+++.|++.+++ .++|+..+-+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~-------~~~~~g~~~r 37 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGY-------AYLDTGAMYR 37 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEeecCcEeH
Confidence 6889999999999999999999954 7787766543
No 151
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00032 Score=65.83 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+...|.|+|+|||||||+|-+|.+.+.- .+.-..++|.|.+|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~q--rgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQ--RGKLTYILDGDNVR 71 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHh--cCceEEEecCcccc
Confidence 45678999999999999999999887742 23345788888886
No 152
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.0021 Score=63.51 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...|.|=||+||||||+++.|++++++ .++|+-.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~-------~yldTGa 37 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGF-------HYLDTGA 37 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCC-------CeecccH
Confidence 367899999999999999999999955 8895543
No 153
>PLN02842 nucleotide kinase
Probab=97.58 E-value=0.0012 Score=72.67 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred EEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 216 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 216 li~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|.|+|||||||+++.|++.++ ..+|+++++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg-------~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG-------LVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC-------CCEEEccHH
Confidence 3689999999999999999984 478865543
No 154
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0028 Score=62.46 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
-.+|+|+|+-|+||||+|+.|+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 357999999999999999999999953
No 155
>PLN02748 tRNA dimethylallyltransferase
Probab=97.50 E-value=0.00029 Score=76.89 Aligned_cols=88 Identities=25% Similarity=0.326 Sum_probs=55.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc---cccchHH-----HHHHhcCCCC------ChhhHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA---FKETDVI-----YRALSSKGHH------DDMLQT 275 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~---ir~sD~i-----rk~L~~~~~~------~~~~y~ 275 (516)
+.+.+|+|.||+||||||++..|++.+ +..+|++|. ++..|.. ..+..+..|+ ++..|+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ys 92 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFT 92 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCc
Confidence 467799999999999999999999998 458999995 3333311 1112222222 223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCCC
Q 010176 276 AELVHQSSTDAASSLLVTALNEGR-DVIMDGTLS 308 (516)
Q Consensus 276 ~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTfs 308 (516)
... ....+...+....+.|+ +||+=||..
T Consensus 93 v~~----F~~~A~~~I~~I~~rgk~PIlVGGTgl 122 (468)
T PLN02748 93 AKD----FRDHAVPLIEEILSRNGLPVIVGGTNY 122 (468)
T ss_pred HHH----HHHHHHHHHHHHHhcCCCeEEEcChHH
Confidence 433 22334557788888885 677766653
No 156
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0065 Score=59.81 Aligned_cols=91 Identities=22% Similarity=0.224 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcC-CCC-C---hhhHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSK-GHH-D---DMLQTAELVHQSST 284 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~-~~~-~---~~~y~~e~v~~~~~ 284 (516)
++.+|.+-|.=||||||.++.|.+.+.. .+-.+++. .|-.-.-...+|.-+... ... + ..++++.+ ++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~--~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR-~~--- 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEE--RGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADR-AQ--- 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHH-HH---
Confidence 5789999999999999999999988742 11122222 111100012233333321 111 1 11223333 22
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCC
Q 010176 285 DAASSLLVTALNEGRDVIMDGTLS 308 (516)
Q Consensus 285 ~~a~~la~~aL~~G~sVIvDaTfs 308 (516)
.+...+..++..|+-||.|--+.
T Consensus 76 -h~~~~i~pal~~g~vVI~DRy~~ 98 (208)
T COG0125 76 -HLEEVIKPALKEGKVVICDRYVD 98 (208)
T ss_pred -HHHHHHHHhhcCCCEEEECCccc
Confidence 24558889999999999996543
No 157
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.47 E-value=0.0025 Score=65.40 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=38.8
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhh---hHhHHHHHHHhHHHhhccCceEEEEecCCC
Q 010176 367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS---QLKSHKRFANAFRNYCELVDNARLYCTNAV 434 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~---ql~s~~rf~~~~~~y~~lvD~~~lydnn~~ 434 (516)
++.+..++++|++|+.++.+ +|..++.|.=|... .+..-+.=.+.+......+|. +.||+..
T Consensus 77 ~~~~~~~~ilFLdA~d~~Li----rRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~--vIDTs~l 141 (284)
T PF03668_consen 77 RKKGIDVRILFLDASDEVLI----RRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADL--VIDTSNL 141 (284)
T ss_pred HhcCCceEEEEEECChHHHH----HHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE--EEECCCC
Confidence 45588899999999999875 45666666666432 233333333444555566663 5677654
No 158
>PLN02199 shikimate kinase
Probab=97.45 E-value=0.0066 Score=62.86 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=30.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..-|++.|.+||||||+++.|++.+++ .+||+|.+-
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~-------~fIDtD~lI 137 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGY-------TFFDCDTLI 137 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEehHHHH
Confidence 456788899999999999999999854 899887654
No 159
>PLN02840 tRNA dimethylallyltransferase
Probab=97.40 E-value=0.00047 Score=74.33 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=56.8
Q ss_pred cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch-----HHHHHHhcCCCC------
Q 010176 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD-----VIYRALSSKGHH------ 269 (516)
Q Consensus 204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD-----~irk~L~~~~~~------ 269 (516)
+.++...++.+|+|.||+||||||++..|++.++ ..+|++|.+. ..| +-..++.+..|+
T Consensus 13 ~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~ 85 (421)
T PLN02840 13 SGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILH 85 (421)
T ss_pred CccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecC
Confidence 3334556778999999999999999999999983 4678887642 111 001111121111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176 270 DDMLQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTL 307 (516)
Q Consensus 270 ~~~~y~~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf 307 (516)
+...|+... ..+.+...++..++.|+ +||+=||.
T Consensus 86 p~e~ySv~~----F~~~A~~~I~~i~~rgkiPIvVGGTG 120 (421)
T PLN02840 86 PSDDYSVGA----FFDDARRATQDILNRGRVPIVAGGTG 120 (421)
T ss_pred CCCceeHHH----HHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 222344333 23345568888888886 57776664
No 160
>PLN02165 adenylate isopentenyltransferase
Probab=97.37 E-value=0.00033 Score=73.39 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=32.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...+.+|+|.||+||||||++..|+..++ ..+|++|.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~-------~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP-------SEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC-------CceecCChh
Confidence 34566899999999999999999999984 478999877
No 161
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.35 E-value=0.00071 Score=73.19 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=37.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
....|.+|+++|++||||||++..|+..+. ..+....+|++|.+|..
T Consensus 96 ~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~a 142 (429)
T TIGR01425 96 KKGKQNVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAG 142 (429)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchh
Confidence 345689999999999999999999987652 12235688999999854
No 162
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.35 E-value=0.0022 Score=60.66 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=77.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC------CCC------ChhhH-
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK------GHH------DDMLQ- 274 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~------~~~------~~~~y- 274 (516)
.....++|++-|.|-||||++|.++.+-.. ..-.+|.-|.| ..++.+. +.+ ++...
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a-----~pwmhigiD~f------~e~lpp~~~d~a~g~~~~~~v~~dg~~~ 87 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAA-----EPWMHIGIDLF------WEALPPEQLDLARGYTWDSAVEADGLEW 87 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhh-----cchhhhhHHHH------HHhCCHHhhccccccccccccccCCcee
Confidence 445679999999999999999999876541 12356644443 3333221 100 00000
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcc
Q 010176 275 ---TAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVK 351 (516)
Q Consensus 275 ---~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~ 351 (516)
.+..+++.+..-....+...+.+|.+||.|.+...+.+.- +.++
T Consensus 88 v~v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~---Dc~r------------------------------ 134 (205)
T COG3896 88 VTVHPGPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLV---DCLR------------------------------ 134 (205)
T ss_pred eEeechhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHH---HHHH------------------------------
Confidence 0111233333333345667778899999999998754432 2222
Q ss_pred ccchhhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176 352 EGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.-.|++|.+++|.|+.|.-..|-.+|.
T Consensus 135 ---------------~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 135 ---------------VLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred ---------------HHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 123678999999999998888777764
No 163
>PRK13976 thymidylate kinase; Provisional
Probab=97.34 E-value=0.0079 Score=59.03 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=48.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCCh----hhHHHHHHHHHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDAA 287 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~----~~y~~e~v~~~~~~~a 287 (516)
.+|++-|.-||||||.++.|++.+.-......+++. .|..-.-...+++-+.+...... ..+++.+ .+..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R-----~~~~ 75 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMR-----REHF 75 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHH-----HHHH
Confidence 378999999999999999999887320000122222 22110012234444443211111 1112211 1122
Q ss_pred HHHHHHHHhCCCcEEEeCCCC
Q 010176 288 SSLLVTALNEGRDVIMDGTLS 308 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs 308 (516)
...+..+|+.|..||.|--+.
T Consensus 76 ~~~I~p~l~~G~~VI~DRy~~ 96 (209)
T PRK13976 76 VKVILPALLQGKIVICDRFID 96 (209)
T ss_pred HHHHHHHHHCCCEEEECCCcC
Confidence 346888999999999996553
No 164
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.31 E-value=0.0025 Score=65.05 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=36.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
...|.++++.|++|+||||++..|+..+. ..+....++++|.++..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAA 114 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHH
Confidence 45688999999999999999999987662 22345678999998754
No 165
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.30 E-value=0.00081 Score=62.90 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=32.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
++++.|+|||||||++..++..+.- .+....+++.|.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK--KGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCChH
Confidence 5788999999999999999876521 1235678999988754
No 166
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.25 E-value=0.0023 Score=66.83 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=35.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
...|.++.+.|||||||||++..|+..+.. .+....++++|.++.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRA 155 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccch
Confidence 356899999999999999999999887632 233567789998874
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00031 Score=61.51 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=26.8
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|++.||||+||||+++.++..++. ..+.++...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----cccccccccc
Confidence 688999999999999999999843 4455655443
No 168
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.23 E-value=0.00016 Score=66.06 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|++.|||||||||+++.|++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999999875
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00044 Score=59.25 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=32.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
+..+++.|||||||||+++.++..+... ....++++++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEcccc
Confidence 4578999999999999999999988531 114677877665443
No 170
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.0011 Score=69.75 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=35.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..+|.+|++.|+||+||||++..|+..+.. .+....++++|.+|..
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~--~g~~V~li~~Dt~R~~ 182 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKK--NGFSVVIAAGDTFRAG 182 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcCcHH
Confidence 346899999999999999988888765521 1234567999988754
No 171
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.18 E-value=0.0036 Score=59.72 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=74.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
....++++|++||||||+.+.|...... ..+.+.+ +++++........++.. .. ......+.. ....
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~---~~~~i~ied~~E~~~~~~~~~~~~~-~~-~~~~~~~~~-------~~~~ 91 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP---DERIITIEDTAELQLPHPNWVRLVT-RP-GNVEGSGEV-------TMAD 91 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEECCccccCCCCCCEEEEEE-ec-CCCCCCCcc-------CHHH
Confidence 4678999999999999999999876632 2244444 22222211000000000 00 000000000 1123
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 369 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~ 369 (516)
.+..++..+-++|+-+-+..++-.+ +++.+..
T Consensus 92 ~l~~~lR~~pd~i~igEir~~ea~~-~~~a~~t----------------------------------------------- 123 (186)
T cd01130 92 LLRSALRMRPDRIIVGEVRGGEALD-LLQAMNT----------------------------------------------- 123 (186)
T ss_pred HHHHHhccCCCEEEEEccCcHHHHH-HHHHHhc-----------------------------------------------
Confidence 6677888889999999998876433 2332221
Q ss_pred CceEEEEEEe-cCHHHHHHHHHHhhhhcCcccch
Q 010176 370 PYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV 402 (516)
Q Consensus 370 gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~ 402 (516)
|+...+.-+. .++..++.|...+..++|+.++.
T Consensus 124 Gh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~ 157 (186)
T cd01130 124 GHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL 157 (186)
T ss_pred CCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH
Confidence 2221223444 48999999999999988887765
No 172
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.14 E-value=0.00033 Score=56.50 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|.++|+|||||||+++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999885
No 173
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.13 E-value=0.009 Score=61.04 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=83.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHH--HhcC-CCCChhhHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRA--LSSK-GHHDDMLQTAELVHQSST 284 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~--L~~~-~~~~~~~y~~e~v~~~~~ 284 (516)
..+.|.+|.++|++|+||||+++.|..-+......+.+..|-.|-|--.+.+-++ |... |.+ ..|-... .
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfP--eSyD~~~----l- 150 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFP--ESYDVAA----L- 150 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCC--ccccHHH----H-
Confidence 5678999999999999999999998775522122334667777777544333221 2211 211 1121111 1
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCC--cccccchhhccccchhhhhhhh
Q 010176 285 DAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDG--TVIENYWEQVKEGEEDYQQKEN 362 (516)
Q Consensus 285 ~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~--~~~e~yw~~v~~a~~~~~~~~~ 362 (516)
......+++|...|.==+|++.-+ .-..+ .|.+...- -++|+-|....+.+
T Consensus 151 ----l~fl~~vK~~~~~v~aPvysh~~y--------------D~vpd-~~~v~~~pdIlI~EG~nvLq~~~p-------- 203 (283)
T COG1072 151 ----LRFLSDVKAGKPDVFAPVYSHLIY--------------DPVPD-AFQVVPQPDILIVEGNNVLQDGEP-------- 203 (283)
T ss_pred ----HHHHHHHhcCCCcccccccccccc--------------ccCCC-ceeecCCCCEEEEechhhhcCCCc--------
Confidence 133344555766555445554210 00011 23322221 12333333322211
Q ss_pred hccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc
Q 010176 363 RQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV 400 (516)
Q Consensus 363 ~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V 400 (516)
.......|.+. |||++|.++.-.|.+.|....|-..
T Consensus 204 -~~~~sdffDfS-IyvDa~~~~le~wyi~Rfl~~g~~a 239 (283)
T COG1072 204 -WLFLSDFFDFS-IYVDADEELLEERYIERFLKFGLTA 239 (283)
T ss_pred -cccccccceEE-EEecCCHHHHHHHHHHHHHhcccch
Confidence 01233455554 8999999999999999998766543
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=97.12 E-value=0.00071 Score=73.35 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=36.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcccccch
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETD 257 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~ir~sD 257 (516)
...|.+|+++|++||||||++..|+..+.- . +....+|++|.+|...
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccccchHH
Confidence 456999999999999999988888775521 1 2356889999998653
No 175
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0017 Score=67.60 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=24.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
-+||+++||||+||||+.++|++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 58999999999999999999999983
No 176
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.12 E-value=0.0013 Score=71.18 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=36.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
...|.+++++|++||||||++..|+..+.. ..+....+|++|.+|..
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKK-KQGKKVLLVACDLYRPA 142 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCeEEEEeccccchH
Confidence 456999999999999999999988876420 11335788999998854
No 177
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.10 E-value=0.001 Score=68.53 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=28.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|+|.||+|||||+++..|++.+ +..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-------~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-------NAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-------CCcEEEechh
Confidence 47899999999999999999988 4467888875
No 178
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.004 Score=59.63 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
+|+|+|.||.||||+++.|. .+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 68999999999999999999 7755
No 179
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.98 E-value=0.003 Score=62.88 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=51.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
||+++|.|-|||||.|..|.+.+..++. +..++| ..|.- .+.++. ..|....--..+...+.+.+.+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~-K~~v~i------i~des----lg~~~n--s~y~~s~~EK~lRg~L~S~v~R 69 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGT-KQSVRI------IDDES----LGIEKN--SNYGDSQAEKALRGKLRSAVDR 69 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcc-cceEEE------echhh----cCCCCc--ccccccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999988743221 235555 22211 222221 1121111012233445678889
Q ss_pred HHhCCCcEEEeCCCCCh
Q 010176 294 ALNEGRDVIMDGTLSWV 310 (516)
Q Consensus 294 aL~~G~sVIvDaTfs~~ 310 (516)
.|..|.-||+|+-..-.
T Consensus 70 ~Lsk~~iVI~DslNyIK 86 (281)
T KOG3062|consen 70 SLSKGDIVIVDSLNYIK 86 (281)
T ss_pred hcccCcEEEEecccccc
Confidence 99999999999766543
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.93 E-value=0.0015 Score=57.51 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcccc---CCCCceEEEeCcccccchHHHHHHh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFKETDVIYRALS 264 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~---~~~~~av~IdaD~ir~sD~irk~L~ 264 (516)
...++++.|++|+||||+++.+...+... ....+.++++...-.....++..+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 59 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEIL 59 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999999999999876210 0012556776555543344444444
No 181
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.85 E-value=0.012 Score=58.22 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=65.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc-CCCC------------------Chhh
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHH------------------DDML 273 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~-~~~~------------------~~~~ 273 (516)
.+++|.||+|+|||.++-.|++++++ .+|..|-+.=. .++.- .+++ .++.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y----~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~ 70 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCY----PELSVGSGRPTPSELKGTRRIYLDDRPLSDGI 70 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-----GGGTTTTT---SGGGTT-EEEES----GGG-S
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecc----cccccccCCCCHHHHcccceeeeccccccCCC
Confidence 47899999999999999999999954 77877776421 12211 1110 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcccc
Q 010176 274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG 353 (516)
Q Consensus 274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a 353 (516)
..++..++.+.. .+...- .+..+|+|+-= ...+..|+++ .||
T Consensus 71 i~a~ea~~~Li~----~v~~~~-~~~~~IlEGGS-----ISLl~~m~~~----------------------~~w------ 112 (233)
T PF01745_consen 71 INAEEAHERLIS----EVNSYS-AHGGLILEGGS-----ISLLNCMAQD----------------------PYW------ 112 (233)
T ss_dssp --HHHHHHHHHH----HHHTTT-TSSEEEEEE-------HHHHHHHHH-----------------------TTT------
T ss_pred cCHHHHHHHHHH----HHHhcc-ccCceEEeCch-----HHHHHHHHhc----------------------ccc------
Confidence 343333443332 333333 37789999643 3344555443 133
Q ss_pred chhhhhhhhhccccCCCceEEEEEEe-cCHHHHHHHHHHhhh
Q 010176 354 EEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAI 394 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~~gy~I~li~V~-~d~elav~R~~~R~~ 394 (516)
..+|+..+..+. .|.+.=+.|..+|+.
T Consensus 113 --------------~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 113 --------------SLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp --------------SSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred --------------cCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 347888887775 578888899999985
No 182
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.84 E-value=0.001 Score=66.03 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=27.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+.|.++++.|+||+||||+++.+.. ...+++.|.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~---------~~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG---------KTLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC---------CCEEEeccc
Confidence 34588899999999999999998752 246786655
No 183
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.003 Score=65.54 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=55.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch-----HHHHHHhcCCCC------ChhhHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD-----VIYRALSSKGHH------DDMLQTA 276 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD-----~irk~L~~~~~~------~~~~y~~ 276 (516)
.|.+|+|+||.+||||-++-.|++++ +..+|+.|.+. .-| +-..++.+..|+ +...|++
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~-------~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRL-------GGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHc-------CCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccH
Confidence 47899999999999999999999999 45899888753 221 111112222111 2223444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176 277 ELVHQSSTDAASSLLVTALNEGR-DVIMDGTL 307 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf 307 (516)
...+ +.+...+....+.|+ ++++=||.
T Consensus 75 ~~f~----~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 75 AEFQ----RDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred HHHH----HHHHHHHHHHHhCCCCcEEEccHH
Confidence 3323 334558888889985 66666665
No 184
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.0014 Score=63.57 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=34.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
|.+|++.||+|+||||.+..|+..+... +....+|..|.+|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCc
Confidence 8899999999999999999998877432 44678899999984
No 185
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.76 E-value=0.0035 Score=68.12 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..|.+|+++|++|+||||++..|+..+.- .+....+|++|.++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g~kV~lV~~D~~R~a 137 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK--KGLKVGLVAADTYRPA 137 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEecCCCCCHH
Confidence 56999999999999999999999876631 2335788999999763
No 186
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0074 Score=65.31 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=34.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.+|.++++.||+||||||++..|+..+.. ..+....+++.|.++..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIA 266 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhh
Confidence 35788999999999999999999875421 11234678999998754
No 187
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.037 Score=53.04 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=23.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.+++.|.||+||||+.+...+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6889999999999999999998887
No 188
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0019 Score=64.05 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=34.0
Q ss_pred cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.....-.+..++.|+|||||||||+.+.|-.-..+ ..|.+.||.+.+
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~ 66 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDV 66 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEec
Confidence 33445567889999999999999999998532211 346788988544
No 189
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0059 Score=58.10 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.++|++.|||||||-|+.......+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l 29 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARL 29 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHh
Confidence 46899999999999999999988777
No 190
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.57 E-value=0.0025 Score=64.72 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=36.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+-+...++.+-|||||||||+.+.|+.-+.+ ..|.+.+|.-.+.+
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~ 68 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIAS 68 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhh
Confidence 4566789999999999999999999986644 35779998877764
No 191
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0044 Score=58.22 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|. ||++|-||+||||++.+|++.++ ..+|+--++
T Consensus 6 ~~PN-ILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~ 41 (176)
T KOG3347|consen 6 ERPN-ILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL 41 (176)
T ss_pred cCCC-EEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence 3455 67789999999999999998884 477755333
No 192
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.57 E-value=0.0062 Score=63.12 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=51.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh------------cCCCC------Chh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS------------SKGHH------DDM 272 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~------------~~~~~------~~~ 272 (516)
.+.+|+|.||.|||||.+|-.|+++. ..+|++|.+. +|+.|. +..|+ +..
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~--------~eIIsaDS~Q----vYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e 70 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK--------AEIINVDSIQ----VYKEFDIASCKPSKELRKHIKHHLVDFLEPIK 70 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC--------CcEEeccHHH----HHCCCceecCCCCHHHHcCCCeeeeeccCCCC
Confidence 45689999999999999999999884 2789888753 233321 11121 223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCC
Q 010176 273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTL 307 (516)
Q Consensus 273 ~y~~e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTf 307 (516)
.|+... ..+.+...+++....|+ +||+=||.
T Consensus 71 ~~sv~~----f~~~a~~~i~~i~~~gk~PilvGGTg 102 (300)
T PRK14729 71 EYNLGI----FYKEALKIIKELRQQKKIPIFVGGSA 102 (300)
T ss_pred ceeHHH----HHHHHHHHHHHHHHCCCCEEEEeCch
Confidence 344333 22234457777777786 56666664
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.56 E-value=0.0039 Score=54.12 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+..+++.|+||+||||+++.+...+.. .....++++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhh
Confidence 3557888999999999999999987621 112445564433
No 194
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.55 E-value=0.0032 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
...+|++.|++||||||+++.+++.++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999864
No 195
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.54 E-value=0.0047 Score=60.05 Aligned_cols=44 Identities=18% Similarity=0.420 Sum_probs=32.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ 258 (516)
|..+.+.|++||||||+.+.+...+.. ..+..++..|.....|.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~---~~~~~~~~~d~~~~~~~ 44 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ---KYQLAVITNDIYTQEDA 44 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc---CCcEEEEeCCcCChhHH
Confidence 678999999999999999999987632 12445666666554443
No 196
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.53 E-value=0.04 Score=52.48 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=51.1
Q ss_pred EEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~-~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~~ 293 (516)
++=.+.+|+||||++.+|..-++ | -+|..|+|.... .+ . ..+ .+.+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~w-------gHvQnDnI~~k~-------------~~-----~----f~~----~~l~ 48 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEW-------GHVQNDNITGKR-------------KP-----K----FIK----AVLE 48 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCC-------CccccCCCCCCC-------------HH-----H----HHH----HHHH
Confidence 44468899999999999998887 7 679777775321 00 0 111 2223
Q ss_pred HH--hCCCcEEEeCCCCChHHHHHHHHHHHhh
Q 010176 294 AL--NEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (516)
Q Consensus 294 aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~ 323 (516)
.| ....-||.|=-......|+++++.....
T Consensus 49 ~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~ 80 (168)
T PF08303_consen 49 LLAKDTHPVVIADRNNHQKRERKQLFEDVSQL 80 (168)
T ss_pred HHhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence 34 3444577787888888999988887664
No 197
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.53 E-value=0.0085 Score=55.52 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=18.1
Q ss_pred EEEecCCCCCHHHHHHHHHHhccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~ 238 (516)
|+|.|++|+||||+++.|++. ++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~ 24 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GY 24 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CC
Confidence 678999999999999999987 43
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.51 E-value=0.0021 Score=68.15 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+.++++++|||||||||+++.|+..+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999998873
No 199
>PRK09087 hypothetical protein; Validated
Probab=96.49 E-value=0.011 Score=58.65 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC----CCCChhhHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~----~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
.+++.|++||||||+++.++... ++.+|+++.+... ....+... +.. +.. + ...+. +..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~~l~iDDi-~~~--~-~~~~~----lf~ 108 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD--AANAAAEGPVLIEDI-DAG--G-FDETG----LFH 108 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH--HHHhhhcCeEEEECC-CCC--C-CCHHH----HHH
Confidence 36788999999999999988776 4578877654322 11111110 000 000 0 00122 334
Q ss_pred HHHHHHhCCCcEEEeCCCCChH
Q 010176 290 LLVTALNEGRDVIMDGTLSWVP 311 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~ 311 (516)
+...+.+.|..+|+-++...+.
T Consensus 109 l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred HHHHHHhCCCeEEEECCCChHH
Confidence 7777778888888888775543
No 200
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.48 E-value=0.0088 Score=63.77 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-+.|..+++.||||+|||.++++++.+++. ..+.+++-++
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-----~~i~vsa~eL 184 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGEL 184 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHHh
Confidence 3477999999999999999999999999964 5677744333
No 201
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.48 E-value=0.0071 Score=64.10 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
..+.+|++.|.|||||||++......- +..++|+|.+..- +.. ..
T Consensus 267 ~~~eiV~~vgfp~sGks~f~a~~~~~~-------~y~~vn~d~lg~~------------------------~~C----~~ 311 (422)
T KOG2134|consen 267 GHGEIVVAVGFPGSGKSTFAAKRVVPN-------GYKIVNADTLGTP------------------------QNC----LL 311 (422)
T ss_pred CCCcEEEEEecCCCCcchhhhhhcccC-------ceeEeecccCCCc------------------------hhh----HH
Confidence 445899999999999999998765443 5688977776421 011 12
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhh
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 324 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h 324 (516)
...++|..|.+||+|.|--....|..+++.|++..
T Consensus 312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e~~ 346 (422)
T KOG2134|consen 312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCATERE 346 (422)
T ss_pred HHHHHhhcccEEeeCCCCcchHHHHHHhhhHHHhC
Confidence 55678889999999999999999999999998753
No 202
>PRK04195 replication factor C large subunit; Provisional
Probab=96.46 E-value=0.0038 Score=68.47 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=35.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY 260 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir 260 (516)
|..+++.||||+||||+++.++.++++ ..+.+|+.+.+..+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~~~i~ 82 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTADVIE 82 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccHHHHH
Confidence 778999999999999999999999965 56778776666555443
No 203
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.46 E-value=0.0039 Score=59.24 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=26.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
++++.|+|||||||+|..++..++. ...+|.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCC
Confidence 5899999999999999999988632 45666543
No 204
>PLN02796 D-glycerate 3-kinase
Probab=96.44 E-value=0.0057 Score=64.55 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=36.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~ 264 (516)
..|.+|.|.|++||||||+++.|...+... +.....|.-|.+--....++.+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~--g~~~g~IsiDdfYLt~~e~~~L~ 150 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNAT--GRRAASLSIDDFYLTAADQAKLA 150 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhccc--CCceeEEEECCcccchhhHHHHH
Confidence 478999999999999999999998877321 11345566666654333444443
No 205
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.44 E-value=0.0056 Score=66.18 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L 263 (516)
..+|.+|.|.|++||||||+++.|...+.. .+.....|.-|+|--....+..+
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~--~g~~vgvISiDDfYLt~eer~kL 261 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRV--TGRKSATLSIDDFYLTAEGQAEL 261 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcc--cCCceEEEEECCccCChHHHHHH
Confidence 347999999999999999999999765521 01235667777775444444444
No 206
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.41 E-value=0.003 Score=56.32 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=33.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
....++.|.|+|||||||+.+.|+..... ..|.+.++...+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISD 51 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTT
T ss_pred cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccc
Confidence 45678999999999999999999876632 23567787666654
No 207
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.38 E-value=0.0029 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.++.|+|||||||+..++.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987544
No 208
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.35 E-value=0.0044 Score=63.39 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..|.+|++.||+|+||||++..|+..+........+.+|+.|.++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4688999999999999999999987662110013567898888763
No 209
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0052 Score=61.40 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i 259 (516)
+.-....+..+-|||||||||++..|+..... +.-.|-+.++..+|....+.
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPD 76 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHh
Confidence 34566788999999999999999999976533 11235577888777665443
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.32 E-value=0.003 Score=61.04 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+++++||+||||||+...++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999887763
No 211
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.32 E-value=0.02 Score=52.24 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=28.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
.+++|.++-++|+||+|||.+++.|++.+..
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 5789999999999999999999999998743
No 212
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.30 E-value=0.0047 Score=54.73 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
....++.+.|+|||||||+++.+. . +.+.++.|++..
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~--~-------G~i~~~g~di~~ 49 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI--K-------RKHRLVGDDNVE 49 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh--C-------CeEEEeeEeHHH
Confidence 445789999999999999999987 2 236777766643
No 213
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.29 E-value=0.04 Score=66.02 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHHHh
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRALS 264 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~L~ 264 (516)
-+...-+.+.|||||||||+...|..-+.+ ..|.+.||..++++-+ .+|+.+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDP---DAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCcccccCCHHHHHHhcc
Confidence 345567889999999999999988776644 3478999999999655 3566543
No 214
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.28 E-value=0.0048 Score=59.43 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 66 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLT 66 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcc
Confidence 4456789999999999999999999876532 2356777765554
No 215
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.26 E-value=0.047 Score=55.50 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=34.3
Q ss_pred CceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhh---HhHHHHHHHhHHHhhccCceEEEEecCCC
Q 010176 370 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQ---LKSHKRFANAFRNYCELVDNARLYCTNAV 434 (516)
Q Consensus 370 gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~q---l~s~~rf~~~~~~y~~lvD~~~lydnn~~ 434 (516)
++.+.++|+.++.++.+. |..++.|.=|...+ +...+.=.+.+.+....+|. +.||+..
T Consensus 81 ~~~~~iLFLeA~~~~Lv~----RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~--vIDTs~l 142 (286)
T COG1660 81 DIDPRVLFLEADDETLVR----RYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADL--VIDTSEL 142 (286)
T ss_pred CCCceEEEEECchhHHHH----HHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhh--EeecccC
Confidence 477999999999998865 55556565553332 23333333333333344443 6787764
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.0045 Score=55.47 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=26.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
++++.|+||+||||++..++..... .+...++++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECC
Confidence 3688999999999999999876621 12345666443
No 217
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.071 Score=55.80 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=82.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc---cch--------HHHHHHhcC--CCC-ChhhHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK---ETD--------VIYRALSSK--GHH-DDMLQTA 276 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir---~sD--------~irk~L~~~--~~~-~~~~y~~ 276 (516)
+-++++|.|+.|||||-|+-.|+.++ ++.+||+|-+. .-| .+++++.-- ++. ++..|+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t- 77 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYT- 77 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhC-------CceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhcc-
Confidence 45789999999999999999999997 56899998874 111 122111000 111 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccch
Q 010176 277 ELVHQSSTDAASSLLVTALNEGR-DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE 355 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~-sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~ 355 (516)
-.+..+.+...++..++.|+ ++|+-||.+- ...+ ++.... . .++-+.+.
T Consensus 78 ---~~~F~~~a~~aie~I~~rgk~PIv~GGs~~y---i~al--~~~~~d-----~-~~dp~~~~---------------- 127 (348)
T KOG1384|consen 78 ---AGEFEDDASRAIEEIHSRGKLPIVVGGSNSY---LQAL--LSKRFD-----P-KIDPFSSN---------------- 127 (348)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCEEeCCchhh---HHHH--hhcCCC-----c-ccCccccc----------------
Confidence 33445555668888998885 7888788764 2221 111100 0 01111000
Q ss_pred hhhhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176 356 DYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 356 ~~~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.|...-.-.|.-=++.|+++..+...|+-.|+
T Consensus 128 ------~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV 159 (348)
T KOG1384|consen 128 ------TGSIPSELRYDCCFLWLDADQAVLFERLDKRV 159 (348)
T ss_pred ------CCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence 01001122577777888899999999999998
No 218
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.23 E-value=0.0082 Score=59.90 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=28.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-=+++.||||.||||+|..++.+++. +...+++-.+.+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~-----~~~~~sg~~i~k 88 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGV-----NFKITSGPAIEK 88 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--S
T ss_pred cceEEEECCCccchhHHHHHHHhccCC-----CeEeccchhhhh
Confidence 344788999999999999999999954 566777766544
No 219
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.22 E-value=0.016 Score=62.39 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=25.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+-.+..|+|.|++|||||||++.|+..++
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344577899999999999999999999874
No 220
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.21 E-value=0.0036 Score=58.09 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=20.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
....|.++++.|++|+||||+.+++.....
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999987763
No 221
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.20 E-value=0.0051 Score=58.46 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=31.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.++...+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 56 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPL 56 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEc
Confidence 4456778999999999999999999875532 235577765444
No 222
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.20 E-value=0.0052 Score=60.28 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|-+.++...+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~ 66 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITG 66 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCC
Confidence 4456789999999999999999999875532 23557777655543
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.0055 Score=65.89 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..|..|++.|++|+||||++..|+..+. ..+....++++|.+|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcc
Confidence 4578999999999999999999987663 223356789999987
No 224
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.18 E-value=0.005 Score=59.23 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=32.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.++...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 64 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPI 64 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEh
Confidence 4456789999999999999999999876532 235577766444
No 225
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.18 E-value=0.0051 Score=59.61 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|.+.++...+.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 69 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDIS 69 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehh
Confidence 4456789999999999999999999876533 2355777665443
No 226
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0055 Score=60.42 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|.+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 66 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDA 66 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 4567789999999999999999999876532 235577765444
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=96.16 E-value=0.019 Score=57.00 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..+++.|++|+|||+++++++.+.. ..+..+++++++++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHHHHh
Confidence 4578899999999999999976542 1134678898777643
No 228
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.16 E-value=0.0052 Score=64.57 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...|.+|.+.|+|||||||+...|...+.. .+....+|..|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~--~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE--QGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence 467899999999999999999998776632 123566676665
No 229
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.006 Score=58.94 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVT 65 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcC
Confidence 4456788999999999999999999875532 2355777655443
No 230
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.15 E-value=0.0076 Score=58.47 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+..++++.|+|||||||++..++..... .+..+++++.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCC
Confidence 46789999999999999999999876521 234567886643
No 231
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.15 E-value=0.0076 Score=58.77 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=37.6
Q ss_pred cCCCC-EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176 208 SERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY 260 (516)
Q Consensus 208 ~~~~P-~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir 260 (516)
...+| ..|-++|||||||||+...+.+.+.- .-...+|..|.+.+.|..+
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~---~~~~aVI~~Di~t~~Da~~ 58 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKD---EYKIAVITGDIYTKEDADR 58 (202)
T ss_pred HhcCceEEEEecCCCCcCHHHHHHHHHHHHHh---hCCeEEEeceeechhhHHH
Confidence 34567 88999999999999999998776621 1245778888887666543
No 232
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.14 E-value=0.0051 Score=58.91 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+|.++.++|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3566889999999999999999998773
No 233
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.14 E-value=0.0065 Score=58.92 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDIT 65 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence 4466789999999999999999999865532 2355777664443
No 234
>PRK13768 GTPase; Provisional
Probab=96.13 E-value=0.0067 Score=61.06 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++.++++.|++||||||++..++..+.. .+..+.+||.|.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEECCC
Confidence 3678999999999999999998876621 234567777765
No 235
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.13 E-value=0.0061 Score=59.13 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 66 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSI 66 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence 4456779999999999999999999976532 235577766544
No 236
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.12 E-value=0.0057 Score=60.24 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.++...+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDIT 67 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhh
Confidence 4456789999999999999999999865532 2356777665443
No 237
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.1 Score=57.57 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.++.++.+.||||+||||.+..|+..+..........+|+.|.++
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 457899999999999999999999765221111245678888875
No 238
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0064 Score=58.64 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 63 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKP 63 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCc
Confidence 4466789999999999999999999976532 23556775543
No 239
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.10 E-value=0.0059 Score=60.13 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.|.|+|||||||+.+.|+....+ ..|.+.++...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~ 66 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLR 66 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcc
Confidence 4467889999999999999999999865532 2356777665553
No 240
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.09 E-value=0.0097 Score=60.93 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...|.++++.|+||+||||+++.++...+. +...+|+..
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~ 78 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD 78 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc
Confidence 445889999999999999999999988742 556776654
No 241
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.09 E-value=0.0064 Score=58.69 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|-+.++...+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~ 64 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDV 64 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 3456778999999999999999999976532 235577765444
No 242
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.08 E-value=0.0065 Score=58.66 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|-+.++...+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVN 67 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 3456779999999999999999999876532 2355777665553
No 243
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.07 E-value=0.0062 Score=58.71 Aligned_cols=43 Identities=33% Similarity=0.403 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|-+.++...+
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 65 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDV 65 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEc
Confidence 4456789999999999999999999976532 235577765444
No 244
>PF05729 NACHT: NACHT domain
Probab=96.07 E-value=0.0047 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++++|.|.+|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999999999998766
No 245
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.025 Score=60.71 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=36.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcccc--CCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~--~~~~~av~IdaD~ir~s 256 (516)
..|.+|++.||+|+||||.+..|+..+... ..+....+++.|.++..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a 220 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG 220 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH
Confidence 468999999999999999999998765321 11345678999998743
No 246
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.07 E-value=0.014 Score=63.13 Aligned_cols=40 Identities=33% Similarity=0.438 Sum_probs=32.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.|.-|++.||||+||||+|+.|++.++. ..+.+|+..|..
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~-----~fi~vD~t~f~e 88 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE 88 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-----hheeecchhhcc
Confidence 4678999999999999999999998854 556676665653
No 247
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0067 Score=59.47 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|.+.++...+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 70 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLT 70 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 3456789999999999999999999876643 2356777665443
No 248
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0068 Score=59.56 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|-+.++...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 66 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDIN 66 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEecc
Confidence 4456789999999999999999999865532 2355777665543
No 249
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.06 E-value=0.0067 Score=58.98 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 70 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLL 70 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 4466789999999999999999999976532 2355777665543
No 250
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.05 E-value=0.067 Score=53.16 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-+++.||+|+|||+++..++....- .+..+.+++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~ 84 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKR 84 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHH
Confidence 35788999999999999999876521 1224567766654
No 251
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0067 Score=59.61 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+.+ ..|-+.++...+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDIS 65 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 4456788999999999999999999976532 2356777765554
No 252
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.04 E-value=0.0074 Score=58.93 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=33.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc-----cccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES-----FWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l-----~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+... .. ..|-+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~ 70 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY 70 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence 44567899999999999999999998765 32 2356778765554
No 253
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.039 Score=59.19 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=35.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
...+.++++.||+|+||||++..|+..+.. .+....+|++|.++.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~ 247 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRS 247 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCc
Confidence 356889999999999999999999876521 123567899999986
No 254
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0091 Score=57.53 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|-+.++...+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~v~~~g~~~~ 66 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIR 66 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcc
Confidence 4466789999999999999999999976543 2356777665543
No 255
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.03 E-value=0.0075 Score=58.91 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+.-... ..|.+.++...+.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~ 75 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLH 75 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcc
Confidence 4467889999999999999999999876532 2355777665443
No 256
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.03 E-value=0.008 Score=57.52 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++.-.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 64 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNI 64 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCccc
Confidence 3456779999999999999999999876543 235577765444
No 257
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.02 E-value=0.007 Score=58.77 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 69 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSL 69 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEh
Confidence 4456789999999999999999999876532 245677765444
No 258
>PHA03132 thymidine kinase; Provisional
Probab=96.02 E-value=0.33 Score=54.72 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
-.+|.+-|..||||||+++.|.+.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4788999999999999999999886
No 259
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.02 E-value=0.0093 Score=57.37 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++..++.+.|+||||||+++..++..... .+..+++|+.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC
Confidence 45689999999999999999998865421 134678897765
No 260
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.01 E-value=0.0077 Score=58.89 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 65 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDIT 65 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3456789999999999999999999876532 2355777665543
No 261
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.00 E-value=0.0084 Score=58.74 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 72 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDIS 72 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcC
Confidence 4466789999999999999999999875432 2356777665543
No 262
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.00 E-value=0.0059 Score=59.19 Aligned_cols=44 Identities=25% Similarity=0.213 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 63 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHT 63 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEcc
Confidence 4456789999999999999999999976533 2355777665553
No 263
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0075 Score=58.66 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=32.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..+.+ ..|-+.++...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 64 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDV 64 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEec
Confidence 4456789999999999999999999875532 235577765444
No 264
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0078 Score=59.48 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=33.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 66 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIR 66 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcC
Confidence 4456788999999999999999999876532 2356778765554
No 265
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.99 E-value=0.0077 Score=58.03 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 64 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKL 64 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 3456789999999999999999999976532 235577766544
No 266
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.99 E-value=0.12 Score=53.05 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=26.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
...++|.+-|+-|||||++|++|++++++
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf 97 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGF 97 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCC
Confidence 45789999999999999999999999965
No 267
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.98 E-value=0.0083 Score=57.76 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQ 65 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCccc
Confidence 3456789999999999999999999875532 2356777665553
No 268
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.98 E-value=0.01 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEecCCCCCHHHHHHHHHHhcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~ 237 (516)
|++.|+||+|||++++.+++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67899999999999999999884
No 269
>PF13245 AAA_19: Part of AAA domain
Probab=95.98 E-value=0.0065 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.+++|.|||||||||++..+...+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999996665555444
No 270
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.97 E-value=0.0072 Score=58.52 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=32.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++.-.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 67 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDL 67 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence 4456788999999999999999999976532 235577765444
No 271
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0078 Score=59.15 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|.+.++...+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~ 74 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMS 74 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 4456789999999999999999999876532 2356777664443
No 272
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.96 E-value=0.011 Score=56.88 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=31.7
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+-...-.+.+.|||||||||+.+.++.-... -.|.+.+....+-
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs 68 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVS 68 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCcccc
Confidence 34566778999999999999999999864422 2244556554443
No 273
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.009 Score=56.15 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~ 66 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADI 66 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEc
Confidence 4456789999999999999999999976532 235677766444
No 274
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0082 Score=57.92 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+. ++.+.|+|||||||+.+.|+.-+.. ..|-+.++...+.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 64 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVL 64 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccc
Confidence 35 8899999999999999999875532 2355777665543
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.93 E-value=0.0096 Score=56.32 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|...... ..|.+.++...+.
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~ 64 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLA 64 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence 3456789999999999999999999876532 2356777654443
No 276
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.93 E-value=0.0061 Score=60.63 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..+.++++.|++||||||+++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3356788999999999999999998873
No 277
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.027 Score=58.98 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=36.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..+|.+|++.|.||+||||-...|+..+. ..+...++.-+|.||..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAa 181 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAA 181 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHH
Confidence 46799999999999999999999987763 22345667788999843
No 278
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0081 Score=58.83 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVR 67 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhh
Confidence 4456789999999999999999999876533 2356777665443
No 279
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.93 E-value=0.0081 Score=59.01 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDLA 67 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCeehH
Confidence 4467889999999999999999999976532 2356777665443
No 280
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.93 E-value=0.0089 Score=58.45 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|-+.++...+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDIT 65 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECC
Confidence 4456789999999999999999999876532 2356777665543
No 281
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.008 Score=59.53 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~ 68 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIK 68 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhh
Confidence 3456789999999999999999999976532 2356777665543
No 282
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0078 Score=58.53 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=30.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.-.+..++.+.|+|||||||+.+.|+....+ ..|.+.++.-
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~ 66 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGE 66 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 4456789999999999999999999875532 2355666543
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.91 E-value=0.0085 Score=56.51 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=32.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~ 65 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVP 65 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEE
Confidence 4456789999999999999999999876533 34567776543
No 284
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.91 E-value=0.0081 Score=58.06 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++.-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~ 61 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGK 61 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCc
Confidence 4456789999999999999999999876532 2355677543
No 285
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.91 E-value=0.011 Score=56.62 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALA 65 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcc
Confidence 3456789999999999999999999876532 2355777665443
No 286
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0088 Score=59.41 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~ 71 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEG 71 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCC
Confidence 4456789999999999999999999876533 23667787655543
No 287
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.90 E-value=0.0091 Score=56.59 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=33.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~ 66 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTR 66 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCc
Confidence 4456778999999999999999999976643 23557777655543
No 288
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0079 Score=58.03 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+..
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~ 64 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTA 64 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCc
Confidence 3456778999999999999999999876532 23567777655543
No 289
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0092 Score=56.34 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. -.|-+.++...+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLT 65 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3456788999999999999999999876532 2355777665443
No 290
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0091 Score=56.12 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=32.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~ 64 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDI 64 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence 3456779999999999999999999876532 235577766444
No 291
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.88 E-value=0.0099 Score=69.57 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
....+|.|.|||||||||+++.|++.+++ .+||.+.+-+.
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~~-------~~~~~g~~yRa 71 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGA-------QCLNTGSFYRA 71 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHHHH
Confidence 34468999999999999999999999954 88966665443
No 292
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.016 Score=62.62 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=56.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH-HHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-YRALSSKGHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i-rk~L~~~~~~~~~~y~~e~v~~~~~~~ 286 (516)
....|.+|+++|+=||||||.+..|+..+. ..+..+-++.+|.+|-.-.. .+.|...- ..+.|.. -..+.-.+.
T Consensus 96 ~~~~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~-~~~~~Pv~I 170 (451)
T COG0541 96 AKKPPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGS-GTEKDPVEI 170 (451)
T ss_pred CCCCCeEEEEEeccCCChHhHHHHHHHHHH--HcCCceEEEecccCChHHHHHHHHHHHHc--CCceecC-CCCCCHHHH
Confidence 356799999999999999999999987662 23446688999999853111 12222210 0000100 001112233
Q ss_pred HHHHHHHHHhCCCc-EEEeCCCCC
Q 010176 287 ASSLLVTALNEGRD-VIMDGTLSW 309 (516)
Q Consensus 287 a~~la~~aL~~G~s-VIvDaTfs~ 309 (516)
+.+-++.+-..+++ ||+||.-..
T Consensus 171 ak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcc
Confidence 44566777777876 556665433
No 293
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0087 Score=58.42 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 68 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIR 68 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHH
Confidence 4456778999999999999999999976633 2366778665443
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.87 E-value=0.0068 Score=57.95 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
.-....++.+.|||||||||+.+.++.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 456778999999999999999999864
No 295
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.86 E-value=0.0094 Score=57.85 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 68 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDI 68 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence 4456789999999999999999999876532 235577765444
No 296
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.034 Score=59.64 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=35.7
Q ss_pred cccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 202 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 202 ~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|...+-++..++++.|.|||||||+++-|..-..+ ..|-+++|..-+
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P---qsG~I~ldg~pV 387 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGKPV 387 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC---CCCceeECCccC
Confidence 3455666688999999999999999999988764432 234467765444
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.85 E-value=0.0091 Score=55.87 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=26.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++|.|+||+|||+++..++...- ..+..+.++..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 68999999999999999876541 2244677886544
No 298
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.85 E-value=0.01 Score=55.45 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 65 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVS 65 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECC
Confidence 4456789999999999999999999876532 2355777664443
No 299
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.84 E-value=0.033 Score=62.04 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc--chHHHHHHhcC-CCC-------------Chh
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE--TDVIYRALSSK-GHH-------------DDM 272 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~--sD~irk~L~~~-~~~-------------~~~ 272 (516)
-++...+.+.|+|||||||+++.|..-+.+ ..|.+.||.-+++. .+.+|+.+.-. +.+ ..+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence 345677889999999999999999876643 34678886656653 34456665411 000 000
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhCCCcEEEe--CCCCChHHHHHHHHHHHhh
Q 010176 273 LQTAELVHQSSTDA-ASSLLVTALNEGRDVIMD--GTLSWVPFVEQTIAMARNV 323 (516)
Q Consensus 273 ~y~~e~v~~~~~~~-a~~la~~aL~~G~sVIvD--aTfs~~~~r~~~~~lAr~~ 323 (516)
..+.+.+.+.+... +...+.. +.+|++.++. +......+|++ +++||..
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~-lp~g~dt~vge~G~~LSgGQrQr-laiARal 480 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIAN-LPDGYDTIVGERGVNLSGGQRQR-LAIARAL 480 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHh-CcccccceecCCCccCCHHHHHH-HHHHHHH
Confidence 01122222222211 1222222 3559998887 55666666665 5677764
No 300
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.84 E-value=0.012 Score=66.80 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=27.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
.++..++.++|||||.||||+|.-++..-|+
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 4556689999999999999999999998855
No 301
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.84 E-value=0.01 Score=58.10 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..+...+...|-++++...+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4456789999999999999999999876530000235577765444
No 302
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.82 E-value=0.01 Score=58.47 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 49 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQI 49 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 345779999999999999999999876532 235577765444
No 303
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.012 Score=57.76 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~ 66 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIR 66 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhh
Confidence 3456789999999999999999999876532 3466778665543
No 304
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.81 E-value=0.0099 Score=58.89 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=32.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|.+.++...+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITI 67 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEc
Confidence 4456788999999999999999999876532 235567765444
No 305
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.80 E-value=0.011 Score=56.69 Aligned_cols=44 Identities=30% Similarity=0.279 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-++++...+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 66 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIK 66 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccc
Confidence 4456789999999999999999999876532 2356778765554
No 306
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.80 E-value=0.01 Score=57.48 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++.-.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 69 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDV 69 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEc
Confidence 4456788999999999999999999876532 235577755433
No 307
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.80 E-value=0.01 Score=56.84 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=31.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|-+.++.-.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 61 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKE 61 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence 3456778999999999999999999976532 23556775544
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.011 Score=55.43 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~ 66 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDL 66 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence 4456789999999999999999999876643 235577766444
No 309
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.78 E-value=0.011 Score=57.69 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++.-.+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 78 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPI 78 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCch
Confidence 4467889999999999999999999876532 235577755433
No 310
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.78 E-value=0.01 Score=58.56 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 66 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVN 66 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 4456789999999999999999999976532 2355777765543
No 311
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.011 Score=59.86 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=31.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+-.+..++.+.|||||||||+.+.++.-+.+ ..|.+.+....
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~ 67 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKP 67 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEcccc
Confidence 4566789999999999999999999874432 23556665543
No 312
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.011 Score=58.07 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 64 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHT 64 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecC
Confidence 3456789999999999999999999876532 2356777765554
No 313
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.011 Score=58.20 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 68 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDIS 68 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence 4456789999999999999999999976532 2355777665554
No 314
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.76 E-value=0.063 Score=51.13 Aligned_cols=33 Identities=6% Similarity=0.171 Sum_probs=25.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|.|.+..|||++|+++.|++.++ ..++|.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg-------~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG-------YPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT---------EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC-------CccCCHHHH
Confidence 578999999999999999999995 477866544
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.76 E-value=0.0088 Score=59.90 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred EecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 217 i~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|.||+||||||+.+.+.+.+.. .+....+||-|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~--~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES--NGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT--T-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHh--ccCCceEEEcch
Confidence 5799999999999999987632 234566776553
No 316
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0091 Score=60.03 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|-+.++...+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 75 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPL 75 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEeh
Confidence 4456789999999999999999999876532 235677876554
No 317
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.76 E-value=0.065 Score=52.83 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=28.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+++.|++|+|||++.+++..+..-......++++++++|.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI 76 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence 5789999999999999997764211112356889887764
No 318
>PRK10908 cell division protein FtsE; Provisional
Probab=95.76 E-value=0.011 Score=57.69 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 66 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDI 66 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 4456789999999999999999999876532 235577766444
No 319
>PF13173 AAA_14: AAA domain
Probab=95.75 E-value=0.01 Score=53.04 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=30.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.++++.|+.|+||||+++.+++.+.. ..+.+++|-|+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHH
Confidence 56889999999999999999988731 2356788665543
No 320
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.75 E-value=0.011 Score=57.38 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 68 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDI 68 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEh
Confidence 4467889999999999999999999876532 235577765444
No 321
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.74 E-value=0.0087 Score=55.98 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.|.+.+|.|+|||||||+..+|.--++
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999999976664
No 322
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.011 Score=57.12 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=30.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+ .++.+.|+|||||||+.+.|+..+.. ..|.+.++.-.+
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 61 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKP---DGGTIVLNGTVL 61 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEec
Confidence 3455 89999999999999999999876532 235566755433
No 323
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.73 E-value=0.0066 Score=65.64 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..=|+++|+||+||||++++|++-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 3458999999999999999999866
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.73 E-value=0.012 Score=55.19 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=29.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~ 61 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMP 61 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEEC
Confidence 4456789999999999999999999876533 23445553
No 325
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.72 E-value=0.011 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
..-+++.|+|||||||++..|.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 567899999999999999999876
No 326
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.71 E-value=0.012 Score=57.96 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.++.++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 67 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDI 67 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEeh
Confidence 4467889999999999999999999976532 235577765443
No 327
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.011 Score=59.23 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=31.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 64 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSITLDGKP 64 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 4456789999999999999999999976532 23556675433
No 328
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.70 E-value=0.012 Score=58.80 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 69 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRD 69 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCcc
Confidence 4467789999999999999999999976532 23567777654
No 329
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.70 E-value=0.0092 Score=60.62 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=58.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----chHHHHH-HhcCCCCChhhH-------HH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----TDVIYRA-LSSKGHHDDMLQ-------TA 276 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----sD~irk~-L~~~~~~~~~~y-------~~ 276 (516)
.+...|-|+|+||+||||+...|...+--.+...+.+-|||---.. -|-+|-. ++.. +..++. ..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d--~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD--PGVFIRSMATRGSLG 104 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTS--TTEEEEEE---SSHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCC--CCEEEeecCcCCCCC
Confidence 4567899999999999999999988774323333444566532211 0111111 1110 000000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHHHHhhhhhccccccccc
Q 010176 277 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK 335 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~ 335 (516)
.. ...+. ..+.-+-..|++ ||+||+=-.++.. +.+.-++...|.+.||+-
T Consensus 105 Gl-s~~t~----~~v~ll~aaG~D~IiiETVGvGQsE~----~I~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 105 GL-SRATR----DAVRLLDAAGFDVIIIETVGVGQSEV----DIADMADTVVLVLVPGLG 155 (266)
T ss_dssp HH-HHHHH----HHHHHHHHTT-SEEEEEEESSSTHHH----HHHTTSSEEEEEEESSTC
T ss_pred Cc-cHhHH----HHHHHHHHcCCCEEEEeCCCCCccHH----HHHHhcCeEEEEecCCCc
Confidence 11 22222 244555557997 5678877676553 345556677777777754
No 330
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.69 E-value=0.011 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=24.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
+...+|++.|..||||||+++.++..++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999999854
No 331
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.011 Score=59.71 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.|.|+|||||||+.+.|+..+.. ..|.+.++...+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 65 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQGKPL 65 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CccEEEECCEEc
Confidence 4456789999999999999999999876532 235677766554
No 332
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.014 Score=56.21 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I 248 (516)
+-....+++++|+|||||||+.+.|-..+.. ..|-++|
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~---d~G~I~v 70 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLP---DEGQILV 70 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCC---CCceEEE
Confidence 5567889999999999999999999887744 2355666
No 333
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.67 E-value=0.0098 Score=57.57 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..+..+++.|++|+||||+++.+.....- .....++++.+.+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHH
Confidence 44677889999999999999999876521 12245777665553
No 334
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.012 Score=58.10 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 66 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHF 66 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEec
Confidence 3456788999999999999999999876532 235577766543
No 335
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.66 E-value=0.018 Score=58.58 Aligned_cols=28 Identities=32% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|.-+++.||||+||||+++.++.+++
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455678899999999999999999874
No 336
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.21 Score=57.92 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+.+|.+.||+|+||||.+..|+..+..........++..|.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 47899999999999999999998765211111245688899887
No 337
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.66 E-value=0.011 Score=59.14 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+....+ ..|-+.++...+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~ 67 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLA 67 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcc
Confidence 4456789999999999999999999976532 2356778665543
No 338
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.64 E-value=0.01 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=+++.||||+||||+|+.++..+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34457789999999999999998865
No 339
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.0098 Score=62.60 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=37.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY 260 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir 260 (516)
.-....++++-|||||||||+.+.|+.-... ..|-+.|+..++....|..
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhH
Confidence 4456778999999999999999999864432 3467889887776544443
No 340
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.014 Score=62.41 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=34.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.++.++++.||+|+||||++..|+..+-.........+|..|.++-.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~g 181 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIG 181 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 45678999999999999999999876421000124578889998743
No 341
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.012 Score=59.30 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.+ ..|-+.++...+.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~ 89 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQDIA 89 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcc
Confidence 4567789999999999999999999876532 2355777665443
No 342
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.63 E-value=0.014 Score=57.21 Aligned_cols=41 Identities=32% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+..++.+.|+|||||||+.+.|+..... ..|-+.+|...+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 44 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGASP 44 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc
Confidence 35678999999999999999999976532 235577766543
No 343
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.62 E-value=0.014 Score=56.68 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 65 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNE 65 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCccc
Confidence 4456789999999999999999999976532 245677765444
No 344
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.62 E-value=0.017 Score=56.49 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++++.|||||||||+.+.|.....+ ..|-+.++.-++
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl 66 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDL 66 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeec
Confidence 3456788999999999999999999876633 235566655443
No 345
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.037 Score=55.51 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=33.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~ 265 (516)
++.-+++.|+|||||+|.+..+.+.++ +.+| ...|.+|..+..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~-------~~hl-----~tGdllr~~ia~ 56 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG-------VIHI-----STGDLLRDEIAS 56 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC-------Cccc-----hhHHHHHHHHhc
Confidence 567788899999999999999999884 4565 345666666654
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.61 E-value=0.012 Score=53.88 Aligned_cols=39 Identities=31% Similarity=0.144 Sum_probs=29.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~ 60 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWG 60 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEEC
Confidence 3456788999999999999999999876532 23456664
No 347
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.60 E-value=0.0096 Score=58.10 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-....++.+.|+|||||||+.+.|+.-.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34567899999999999999999998654
No 348
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.012 Score=57.76 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+-....++.+.|+|||||||+.+.|+..... ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~ 65 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEILLDGKDIT 65 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 3456789999999999999999999977643 2356777665443
No 349
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.59 E-value=0.013 Score=58.35 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=32.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|-+.++...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 64 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQL 64 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 4456788999999999999999999876532 235577766444
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.59 E-value=0.03 Score=54.63 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=28.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~ 252 (516)
+++.++++.|+||||||+++.+++.+.- .. +..+++|..++
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEE 58 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecC
Confidence 4578999999999999999999775431 11 23668885544
No 351
>PRK04296 thymidine kinase; Provisional
Probab=95.58 E-value=0.015 Score=55.97 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=27.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
..++++.|+|||||||++..++.+... ++..+.++.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEec
Confidence 468999999999999999999887632 2334566644
No 352
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.014 Score=56.37 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 66 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDI 66 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeC
Confidence 4456789999999999999999999876532 235677766443
No 353
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.58 E-value=0.015 Score=60.00 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
....+.+|.+.|+|||||||++..+...+.. .+....+|+.|..
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~--~~~~v~~i~~D~~ 73 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRR--RGLKVAVIAVDPS 73 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 3456788888899999999999998876521 1224567777743
No 354
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.57 E-value=0.016 Score=58.84 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccC-C----CCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-A----ATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~-~----~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+.... . -.|-+.++...+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 345678999999999999999999987653200 0 0356778766554
No 355
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.56 E-value=0.015 Score=56.72 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|.+.++.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~~ 69 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLP---DSGRILVRH 69 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEEec
Confidence 4456789999999999999999999876532 235677763
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.014 Score=55.93 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
-....++.+.|+|||||||+.+.|+.-... ..|.+.++.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g 60 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDG 60 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECC
Confidence 356678999999999999999999875532 234566643
No 357
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.56 E-value=0.015 Score=57.24 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 67 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRP---DEGSVLFGGTDLT 67 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEECCeecC
Confidence 4456789999999999999999999976532 2355777664443
No 358
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.56 E-value=0.012 Score=58.14 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
-....++.+.|+|||||||+.+.|+..+.+ ..|.+.++...+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~ 65 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDAT 65 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 456779999999999999999999976532 2355777665554
No 359
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.56 E-value=0.012 Score=57.21 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i 259 (516)
-.....+.|.|||||||||+..-++.-..+ ..|.+.||..+...+.|.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPA 69 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcc
Confidence 345678899999999999999999864422 447789988887655443
No 360
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.55 E-value=0.013 Score=59.09 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 71 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENI 71 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 4466789999999999999999999876532 235577765444
No 361
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.54 E-value=0.014 Score=57.95 Aligned_cols=41 Identities=20% Similarity=0.077 Sum_probs=31.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~ 65 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMR 65 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecc
Confidence 4456789999999999999999999876532 2355777653
No 362
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.013 Score=59.31 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.-....++.+.|+|||||||+.+.|+....+ ..|-+.++...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 70 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQP 70 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence 4456789999999999999999999876532 23556675543
No 363
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.027 Score=60.07 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=63.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc--chHHHHHHhcCCCCChhhHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE--TDVIYRALSSKGHHDDMLQTAELVHQSSTD 285 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~--sD~irk~L~~~~~~~~~~y~~e~v~~~~~~ 285 (516)
...+|.+|.+.|+.||||||....++-.+. ..+-....|-+|.||. .|.+.. ..... .-+.|.+ .+...-..
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRagAfDQLkq-nA~k~--~iP~ygs-yte~dpv~ 170 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAGAFDQLKQ-NATKA--RVPFYGS-YTEADPVK 170 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHH--hcCCceeEEeecccccchHHHHHH-HhHhh--CCeeEec-ccccchHH
Confidence 456899999999999999999999886551 1122567899999984 333221 11100 0111210 11112233
Q ss_pred HHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHH
Q 010176 286 AASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 286 ~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~l 319 (516)
.+.+-.++.-+++++ ||+||+-.+...-..|.+|
T Consensus 171 ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 171 IASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 445567777888987 4567766666555555444
No 364
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.53 E-value=0.025 Score=54.86 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ 258 (516)
....|..|.+.|++||||||+...++..+.. .....++..|.....|.
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~---~~~v~v~~~~~~~~~D~ 65 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD---EVKIAVIEGDVITKFDA 65 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhc---CCeEEEEECCCCCcccH
Confidence 3456889999999999999999999987531 11334555555444444
No 365
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.015 Score=57.21 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++...+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 70 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDIT 70 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecC
Confidence 4456789999999999999999999875532 2355777665443
No 366
>PHA00729 NTP-binding motif containing protein
Probab=95.53 E-value=0.01 Score=59.25 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..-|+|.|+||+||||+|..|+..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999886
No 367
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.53 E-value=0.015 Score=55.89 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=29.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~ 65 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVP 65 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEc
Confidence 4567889999999999999999999876532 23445554
No 368
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.52 E-value=0.013 Score=58.97 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=30.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++.
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g 73 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGT 73 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECC
Confidence 4456789999999999999999999876532 234566654
No 369
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.52 E-value=0.022 Score=59.18 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=24.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
.|.-+++.||||+||||+++.++.++++
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 3556788999999999999999999854
No 370
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.52 E-value=0.012 Score=63.02 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|.-+++.||||+|||+++++++.+++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4577799999999999999999999874
No 371
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.015 Score=58.76 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~ 74 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITIS 74 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecC
Confidence 4456789999999999999999999876532 2356777665553
No 372
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.50 E-value=0.018 Score=57.53 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=32.2
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-++..++.|.|||||||||+...+..-..+ ..+.++|+.-++
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~ 69 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDL 69 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEc
Confidence 35567889999999999999999998754322 235677776333
No 373
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.49 E-value=0.019 Score=55.98 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
+...++++.|+|||||||++..++.+.- ..+..+++|+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC
Confidence 4578999999999999999999987541 123467889776
No 374
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.48 E-value=0.015 Score=56.58 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|.+.++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~ 62 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGH 62 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 3456779999999999999999999976532 2355666553
No 375
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.015 Score=56.21 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..........|.+.++...+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence 44567899999999999999999998765300002355777654443
No 376
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.48 E-value=0.014 Score=63.27 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
-.|.-|++.||||+||||+++.|+..++.
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35777999999999999999999999843
No 377
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.48 E-value=0.017 Score=59.32 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=28.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
-+++.||||+||||+++.++..+...+...+.+.+|+.++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 3678999999999999999988742110123567766444
No 378
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.48 E-value=0.017 Score=55.67 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=31.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++.-.+
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 72 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDI 72 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEh
Confidence 3456778999999999999999999876532 235577755433
No 379
>PLN03025 replication factor C subunit; Provisional
Probab=95.47 E-value=0.02 Score=59.26 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..|. +++.||||+||||++..++.++
T Consensus 33 ~~~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 3455 5679999999999999999887
No 380
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.47 E-value=0.016 Score=58.45 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.|.|+|||||||+.+.|+..... -.|-+.++...+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~ 77 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLA 77 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3456789999999999999999999865432 2355777665554
No 381
>PTZ00202 tuzin; Provisional
Probab=95.47 E-value=0.075 Score=58.12 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
...|.++++.|++|+||||+++.+...++. -..++|+-
T Consensus 283 ~~~privvLtG~~G~GKTTLlR~~~~~l~~-----~qL~vNpr 320 (550)
T PTZ00202 283 TAHPRIVVFTGFRGCGKSSLCRSAVRKEGM-----PAVFVDVR 320 (550)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhcCCc-----eEEEECCC
Confidence 345779999999999999999999977643 35667665
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.46 E-value=0.012 Score=57.15 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
..++++.|||||||||+.+.+...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 479999999999999999998753
No 383
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.46 E-value=0.011 Score=65.65 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=25.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
....++++.||+||||||..+.|++++++
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34569999999999999999999999965
No 384
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.46 E-value=0.02 Score=55.07 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=32.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 64 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPL 64 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence 4456789999999999999999999876532 235577765444
No 385
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.45 E-value=0.013 Score=64.56 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=33.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-++...+.+.|+|||||||+++.|..-+.+ ..|.+.+|.-+++
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~i~g~~i~ 400 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDP---LQGEVTLDGVSVS 400 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence 3456788999999999999999999876643 3466888765544
No 386
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.45 E-value=0.016 Score=58.39 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=32.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..+.+ ..|.+.++...+
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 77 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPL 77 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEC
Confidence 4566789999999999999999999876633 235577765444
No 387
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.44 E-value=0.012 Score=56.71 Aligned_cols=25 Identities=44% Similarity=0.398 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
..+.++++.|+|||||||+.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 4467999999999999999999984
No 388
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.018 Score=58.00 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=35.8
Q ss_pred cccccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 202 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 202 ~~~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+......-.+..++.+.||||+||||+.+.++.-... ..|.+.++...+
T Consensus 19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~~~g~~v 67 (248)
T COG1116 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVLLDGRPV 67 (248)
T ss_pred eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc
Confidence 3334445677889999999999999999999864432 335677766655
No 389
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.016 Score=58.41 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|.+.++.-.+
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~ 73 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAI 73 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 3456789999999999999999999876532 235677866544
No 390
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.43 E-value=0.022 Score=59.40 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCC----CceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA----TNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~----~~av~IdaD~ir~s 256 (516)
...|..++|.|+||+||||+++.+...+...... -..++||+......
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 3456678999999999999999998765210000 14577887666543
No 391
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.43 E-value=0.015 Score=57.05 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=30.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g 83 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRG 83 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence 4456789999999999999999999875432 234566644
No 392
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.42 E-value=0.016 Score=57.39 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCC--CCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~--~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+....+... ..|-+.++...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence 4456789999999999999999999865532000 0355777665553
No 393
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.097 Score=56.82 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..+.++.+.|+||+||||+...|+...-........-++..|.++
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 457899999999999999999998753110001234567777776
No 394
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.40 E-value=0.017 Score=57.15 Aligned_cols=41 Identities=24% Similarity=0.114 Sum_probs=30.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.-....++.+.|+|||||||+.+.|+....+ -.|.+.++..
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~g~ 83 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVRVAGL 83 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCE
Confidence 3456789999999999999999999876532 2355666543
No 395
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.015 Score=58.85 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.++...+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i 71 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLI 71 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 3456778999999999999999999876532 235677766444
No 396
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.038 Score=61.88 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
-..|+=++++||||+|||.+|++++.+++. ...-|++-++
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~isApei 259 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSISAPEI 259 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeecchhh
Confidence 356888999999999999999999999954 4455655554
No 397
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.40 E-value=0.015 Score=55.22 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=25.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
+++|.|++||||||+|..++...+ ....++..-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEcc
Confidence 478899999999999999987742 255677443
No 398
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.016 Score=58.86 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=34.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|-+.++...+.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i~~~g~~i~ 72 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTITVGGMVLS 72 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence 4456789999999999999999999876533 3456788776654
No 399
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.38 E-value=0.018 Score=55.32 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+... .. ..|.+.++...+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~ 76 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLD 76 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCc
Confidence 44567899999999999999999998765 32 2356777665443
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.38 E-value=0.036 Score=64.26 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=38.8
Q ss_pred CCCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176 209 ERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 266 (516)
Q Consensus 209 ~~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~ 266 (516)
+.+|. .+++.||||+|||++|+.|++.++. ..+.+|..++...+.. ..|.|.
T Consensus 484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~~~-~~LiG~ 536 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTV-SRLIGA 536 (758)
T ss_pred CCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccccH-HHHcCC
Confidence 34564 6899999999999999999998843 5677887777655443 456553
No 401
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.37 E-value=0.011 Score=58.19 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La 233 (516)
.|.+..+.|||||||||+.++|.
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999997
No 402
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.36 E-value=0.017 Score=59.37 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+.-+.+ ..|-+.++...+.
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 58 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRP---TSGTARVAGYDVV 58 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 4456788999999999999999999976532 2356777665553
No 403
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.36 E-value=0.015 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.+.+|.||||+||||+...++..+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3478999999999998888877665
No 404
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.36 E-value=0.013 Score=57.60 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+ .. ..|.+.++...+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~ 67 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLL 67 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecC
Confidence 44567799999999999999999998753 11 2366788765553
No 405
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.35 E-value=0.016 Score=63.95 Aligned_cols=29 Identities=34% Similarity=0.348 Sum_probs=26.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
+.|+-|++.||||+|||++++.++.+.+.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56788999999999999999999999853
No 406
>PRK10646 ADP-binding protein; Provisional
Probab=95.35 E-value=0.023 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
+.+|++.|.-||||||+++.+++.++.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999999864
No 407
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.35 E-value=0.017 Score=57.61 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 69 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTI 69 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence 4457789999999999999999999976532 235577766544
No 408
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.017 Score=57.67 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=32.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..+.+ ..|-+.++...+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 66 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPI 66 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEh
Confidence 3456788999999999999999999876532 235577766444
No 409
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.34 E-value=0.013 Score=55.68 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|+++|+||+||||+.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998877
No 410
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.34 E-value=0.016 Score=60.79 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.1
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
|++.|+||+||||+++.|+..+++ ..+.|+.
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~ 97 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNL 97 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEe
Confidence 888999999999999999999976 4555543
No 411
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.34 E-value=0.013 Score=57.47 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc-CCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~-~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+...... ....|-+.++...+.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL 55 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech
Confidence 34567899999999999999999999765310 001355777665543
No 412
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.34 E-value=0.019 Score=57.98 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.2
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
+++.|+||+||||+|+.|+..++. ..+.++..
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~ 55 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGD 55 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCC
Confidence 456899999999999999987743 55667554
No 413
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.33 E-value=0.023 Score=58.48 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=32.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++...+
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPV 68 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 4456789999999999999999999875532 235577765444
No 414
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=55.94 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..... ....|-+.++...+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~ 73 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPL 73 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEeh
Confidence 3456789999999999999999999863210 00235577765443
No 415
>COG4240 Predicted kinase [General function prediction only]
Probab=95.32 E-value=0.051 Score=54.52 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=39.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~ 265 (516)
+..+|.++.++||-||||||++..|...+-..+ ......++-|++--....+-+|..
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg-~ert~~lSLDDlYlthadrl~La~ 102 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKG-LERTATLSLDDLYLTHADRLRLAR 102 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhc-ccceEEeehhhhhcchHHHHHHHH
Confidence 567899999999999999999998876553211 124567777777554444444443
No 416
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.32 E-value=0.019 Score=55.89 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=31.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~i 75 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTA 75 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCEEc
Confidence 3456778999999999999999999876532 235577765444
No 417
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.013 Score=58.15 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=31.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++.-.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 4456789999999999999999999864310 00 0125577766444
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.021 Score=52.54 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
-....++.+.|+|||||||+.+.|...+.. ..+-+.++...+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~ 63 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDI 63 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEc
Confidence 345578999999999999999999876532 235566755444
No 419
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.29 E-value=0.018 Score=61.29 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=36.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 257 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD 257 (516)
.-.+..++.+.|+|||||||+.+.|...... ..|-++++...+...+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~ 61 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQS 61 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCC
Confidence 4466789999999999999999999976643 3466888887766544
No 420
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.018 Score=58.76 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=33.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.+ ..|-+.++...+.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 72 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDIT 72 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEECCEECC
Confidence 3456789999999999999999999876533 2356788776654
No 421
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.017 Score=58.79 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=31.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++.-.+
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 75 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAI 75 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEc
Confidence 3456779999999999999999999876532 235577765433
No 422
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.28 E-value=0.019 Score=56.10 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=29.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+..+++.|++|+|||++++.+...... .+..++++++..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY--GGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEehHHh
Confidence 456789999999999999999876521 1335678866554
No 423
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.28 E-value=0.022 Score=54.84 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=33.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+... .. ..|-+.+|...+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~ 68 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITD 68 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCc
Confidence 44567899999999999999999998752 11 23557887766654
No 424
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.018 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|+++|+||+||||++..+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45668999999999999999999876
No 425
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.019 Score=58.32 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|.+.++...+.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~ 75 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTS 75 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEecc
Confidence 4456789999999999999999999876532 3366788765553
No 426
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.26 E-value=0.019 Score=57.25 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=33.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..+.. ..|-+.++...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 66 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLH 66 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcc
Confidence 3456789999999999999999999876532 2355777665554
No 427
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.02 Score=58.06 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=33.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.|.|+|||||||+.+.|+..+.+ ..|.+.++...+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTG 67 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECC
Confidence 4456789999999999999999999876532 3466778765554
No 428
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.018 Score=57.95 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=32.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... ..|.+.++...+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 71 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHI 71 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEh
Confidence 4456789999999999999999999876532 235577765444
No 429
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.25 E-value=0.023 Score=50.67 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|++.|.+|+||||++..++..+. ..+....+||+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~--~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA--EKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCc
Confidence 68899999999999999987762 2233567788887
No 430
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.25 E-value=0.033 Score=56.70 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=38.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i 259 (516)
.-....++++.|+|||||||+.+.+-.-... ..|-++||.-++...|+.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEILIDGEDISDLDPV 71 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCC---CCceEEECCeecccCCHH
Confidence 3456778899999999999999988654422 347799999999888765
No 431
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.24 E-value=0.076 Score=54.57 Aligned_cols=96 Identities=21% Similarity=0.324 Sum_probs=54.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc-cc------cc---h-HHHHHHhcC---CCCChhh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA-FK------ET---D-VIYRALSSK---GHHDDML 273 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~-ir------~s---D-~irk~L~~~---~~~~~~~ 273 (516)
..++|.+|++.|--||||||+.++|-..+...+.+ ..+||-|- ++ +- | +-||+.... |+ +.++
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p--pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP-NGgI 91 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP--PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP-NGGI 91 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCC--CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC-Ccch
Confidence 45789999999999999999999998877542222 24555542 11 11 1 234443332 21 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCC
Q 010176 274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 306 (516)
Q Consensus 274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaT 306 (516)
-++-...-.-.+....++++....-..+++|+.
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTP 124 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDTP 124 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCC
Confidence 332221222223334567777666668899974
No 432
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.23 E-value=0.016 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|+|.|++||||||+.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6788999999999999998765
No 433
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.22 E-value=0.015 Score=61.78 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
-.+|+++||+||||||+.+.|+..+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 434
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.21 E-value=0.032 Score=57.62 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~i 259 (516)
.....++-+.|+|||||||+...+...+.. ..+..+|..|.-...|..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~---~~~~~VI~gD~~t~~Da~ 148 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD---SVPCAVIEGDQQTVNDAA 148 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhcc---CCCEEEECCCcCcHHHHH
Confidence 345678889999999999999999887632 235677877754433433
No 435
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.21 E-value=0.019 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+-..+|+.|.||+||||+..+|+..-
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~G 33 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAG 33 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcC
Confidence 33688999999999999999999764
No 436
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.20 E-value=0.021 Score=57.90 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|-+.++.-.+.
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 69 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPIT 69 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 4466789999999999999999999876532 2355777665443
No 437
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.02 Score=56.45 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
-....++.+.|+|||||||+.+.|+..+.. ..|.++++...+.
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~ 64 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDIT 64 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcC
Confidence 345779999999999999999999876533 2356777665443
No 438
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.19 E-value=0.031 Score=54.55 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ 252 (516)
+...++.+.|+|||||||++..++...... +...++++|+.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 457899999999999999999997543110 1124678886654
No 439
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.022 Score=56.54 Aligned_cols=38 Identities=34% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
+...+..|-|||||||||+.+.|..++.+ ..|-+.++.
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~~~g 62 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELSP---DSGEVTLNG 62 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccCC---CCCeEeeCC
Confidence 44567888999999999999999998854 224455533
No 440
>PF13479 AAA_24: AAA domain
Probab=95.19 E-value=0.016 Score=56.58 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=26.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+|.-++|.|+||+||||++..+ + +..+||.|.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~-~---------k~l~id~E~ 33 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL-P---------KPLFIDTEN 33 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC-C---------CeEEEEeCC
Confidence 5788999999999999999987 1 457887654
No 441
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.03 Score=56.91 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccC-------------------CCCceEEEeCcccccch
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-------------------AATNAVVVEADAFKETD 257 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~-------------------~~~~av~IdaD~ir~sD 257 (516)
+.|..+++.||||+||||++..|+..+.... ..++...+++.+-+..|
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~ 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence 4577899999999999999999999886311 13577778887776644
No 442
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.19 E-value=0.023 Score=61.94 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=25.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|.-+++.||||+|||++++.++.++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4577889999999999999999999874
No 443
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.19 E-value=0.021 Score=57.44 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~ 76 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLY 76 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcc
Confidence 4456789999999999999999999876532 2355777665443
No 444
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.022 Score=57.09 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=28.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
....++.+.|+|||||||+.+.|+....+ ..|.+.++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p---~~G~i~~~g 60 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKP---DEGDIEIEL 60 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEEECC
Confidence 45678999999999999999999876532 224455543
No 445
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.18 E-value=0.021 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-....++.+.|+|||||||+.+.|+..+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44667899999999999999999998754
No 446
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.17 E-value=0.023 Score=61.21 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|.-+++.||||+|||++++.++.+..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578899999999999999999998874
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.017 Score=57.38 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+..... ++ ...|-+.++...+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 3456789999999999999999999876421 00 01355777665543
No 448
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.023 Score=57.81 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|.++++.-.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~ 72 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQIIIDGDLLT 72 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence 3456788999999999999999999876532 3456778765553
No 449
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.15 E-value=0.018 Score=60.81 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=34.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.++...+..
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~i~g~~i~~ 68 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVSR 68 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCC
Confidence 3456789999999999999999999976533 33667887766543
No 450
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.15 E-value=0.032 Score=58.86 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..|..++|.|+||+||||+++.+...+.-....-..++||+.....
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 4566678999999999999999987662100012457788766654
No 451
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.018 Score=60.79 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=34.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|.+.+|...+...
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~ 73 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQIFIDGEDVTHR 73 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCC
Confidence 4456779999999999999999999875533 336688877666443
No 452
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.15 E-value=0.019 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCC-EEEEEecCCCCCHHHHHHHHH
Q 010176 210 RSP-VLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 210 ~~P-~LIli~G~sGSGKSTlA~~La 233 (516)
..+ .++++.|||||||||+.+.+.
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 344 689999999999999999987
No 453
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.14 E-value=0.018 Score=61.13 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+|.+|.|+|+|||||||++..|.+.+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999998884
No 454
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.13 E-value=0.2 Score=52.70 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=71.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccccc-chHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKE-TDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~-sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
....|+++|++||||||+.++|+..... ....+.| |+.++.- .++....+... ..... .... .+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~---~~ri~tiEd~~El~l~~~~n~~~~~~~-~~~~~--~~~~-------~~~ 225 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA---IERLITVEDAREIVLSNHPNRVHLLAS-KGGQG--RAKV-------TTQ 225 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC---CCeEEEecCCCccccccCCCEEEEEec-CCCCC--cCcC-------cHH
Confidence 3466999999999999999999987742 1223334 1112210 00000000000 00000 0000 123
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
.++..+|...-++|+=+-....+-...+. .+.. ..
T Consensus 226 ~ll~~~LR~~PD~IivGEiR~~ea~~~l~-a~~t--------------------------------------------Gh 260 (332)
T PRK13900 226 DLIEACLRLRPDRIIVGELRGAEAFSFLR-AINT--------------------------------------------GH 260 (332)
T ss_pred HHHHHHhccCCCeEEEEecCCHHHHHHHH-HHHc--------------------------------------------CC
Confidence 47788888898888888777764332221 1111 01
Q ss_pred CCceEEEEEEe-cCHHHHHHHHHHhhhhcCcccchhh
Q 010176 369 KPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNS 404 (516)
Q Consensus 369 ~gy~I~li~V~-~d~elav~R~~~R~~~gGr~Vp~~~ 404 (516)
.| .+--+. .++..++.|......++|..++.+.
T Consensus 261 ~G---~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~ 294 (332)
T PRK13900 261 PG---SISTLHADSPAMAIEQLKLMVMQAGLGMPPDQ 294 (332)
T ss_pred Cc---EEEEEecCCHHHHHHHHHHHHHhccCCCCHHH
Confidence 11 122333 3789999999998888887776543
No 455
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.13 E-value=0.016 Score=57.74 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.|.+..|.|+|||||||+.++|.--++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 478899999999999999999987664
No 456
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.11 E-value=0.017 Score=59.68 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=65.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc-----chHHHHH-HhcC-C---CC-ChhhHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----TDVIYRA-LSSK-G---HH-DDMLQTA 276 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~-----sD~irk~-L~~~-~---~~-~~~~y~~ 276 (516)
...+|..|-|+|+||+||||+...|..++.-.|+.-..+-|||-.-+. -|-+|-. +... + ++ +.--...
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 446788899999999999999999998874433333445566633221 1222211 1100 0 00 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCCCCChHHHHHHHHHHHhhhhhccccccccc
Q 010176 277 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYK 335 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~s-VIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~ 335 (516)
.. .+. ....+.-+=..|++ ||+||+--.++..+ .+.-++.-.|.+-||+-
T Consensus 127 Gl-S~a----t~~~i~~ldAaG~DvIIVETVGvGQsev~----I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 127 GL-SRA----TREAIKLLDAAGYDVIIVETVGVGQSEVD----IANMADTFLVVMIPGAG 177 (323)
T ss_pred hh-hHH----HHHHHHHHHhcCCCEEEEEecCCCcchhH----HhhhcceEEEEecCCCC
Confidence 11 222 22355556667998 56788777665543 33334556677766653
No 457
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.022 Score=59.89 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+.-..+ ..|-+.++...+.
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I~~~g~~i~ 70 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERP---TSGRVLVDGQDLT 70 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 4456789999999999999999999876532 2356777765554
No 458
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.10 E-value=0.018 Score=60.73 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|.-+++.||||+||||+++.++.++.
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567799999999999999999999884
No 459
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.10 E-value=0.022 Score=57.72 Aligned_cols=40 Identities=20% Similarity=0.025 Sum_probs=29.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.-....++.+.|+|||||||+.+.|+..+.+ ..|-+.++.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p---~~G~I~~~g 85 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSP---TVGKVDRNG 85 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECC
Confidence 4567789999999999999999999876532 224455543
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.09 E-value=0.019 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
...++++|++||||||+.+.++....
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 57899999999999999999998874
No 461
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.09 E-value=0.026 Score=56.96 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
+...+++|.|+||+||||++.+++...- ..+..+.+++.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEec
Confidence 4578999999999999999999876531 123466778554
No 462
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.09 E-value=0.024 Score=56.58 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=32.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc-CCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~-~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+...... ....|-+.++...+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence 44567899999999999999999998754210 00125577765444
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.09 E-value=0.021 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La 233 (516)
..++.+++.||||+||||+.+.+.
T Consensus 27 ~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 27 GGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred CCceEEEEECCCCCChHHHHHHHH
Confidence 335899999999999999999987
No 464
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.08 E-value=0.019 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+ ++.+.|+|||||||+.+.|.--+
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 334 88999999999999999997443
No 465
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.022 Score=57.70 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=32.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-+.. ..|-+.++.-.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~ 66 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKP---TSGEVLIKGEPI 66 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence 4456789999999999999999999875532 235677766554
No 466
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.023 Score=58.09 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|+|||||||+.+.|+..+.. ..|.+.++.-.+
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 70 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDIVV 70 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 4567789999999999999999999976533 346677866544
No 467
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.07 E-value=0.018 Score=57.56 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=31.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++.-.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 4456789999999999999999999975421 00 0135577765443
No 468
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.07 E-value=0.031 Score=57.58 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=31.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.-+...++.+.|+|||||||+.+.|+.-... -.|-+.++.
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G 66 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLG 66 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcC
Confidence 4566789999999999999999999976633 235566655
No 469
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.07 E-value=0.017 Score=63.65 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
..|.-+++.||||+|||++++.++.+.+. ..+.+++.+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~-----~~~~i~~~~ 123 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----PFFSISGSD 123 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCC-----CeeeccHHH
Confidence 45667999999999999999999988743 345554433
No 470
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.06 E-value=0.018 Score=57.72 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-..+ +. ...|.+.++...+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3456789999999999999999999865420 00 0125577765444
No 471
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.06 E-value=0.025 Score=56.59 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+..... ..|-+.++...+.
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~ 86 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDIS 86 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhh
Confidence 4456789999999999999999999876533 2355777664443
No 472
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.06 E-value=0.018 Score=57.16 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.-....++.+.|+|||||||+.+.|+.-
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4456789999999999999999999864
No 473
>CHL00181 cbbX CbbX; Provisional
Probab=95.06 E-value=0.021 Score=58.75 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-+++.|+||+||||+|+.++..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4447889999999999999998765
No 474
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.05 E-value=0.018 Score=57.06 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... + ....|-+.++...+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 4456789999999999999999999854320 0 00125577766544
No 475
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.04 E-value=0.025 Score=57.93 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.-....++.+.|+|||||||+.+.|+..+.
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446678999999999999999999987653
No 476
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.02 E-value=0.025 Score=62.97 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
++...+.+.|+|||||||+++.|+.-+.+ ..|-+.+|..++..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~ 409 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI---DEGEILLDGHDLRD 409 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC---CCceEEECCEEhhh
Confidence 45678899999999999999999987644 34668887766654
No 477
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.026 Score=57.26 Aligned_cols=44 Identities=25% Similarity=0.123 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|+.-+.+ ..|-+.++...+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 70 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRVKVMGREVN 70 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 3456789999999999999999999876532 2356778775554
No 478
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.02 E-value=0.074 Score=53.29 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++-.++++.|+||||||+++.+++-+.- ..+...++|..|+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecC
Confidence 4567899999999999999999877652 2234567884444
No 479
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.029 Score=56.44 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=34.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.+.|+|||||||+.+.|..-... ..|.++++..++.
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~ 69 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQIT 69 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchh
Confidence 4456788999999999999999999874433 3456888886664
No 480
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.00 E-value=0.031 Score=56.37 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=36.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-.+..+..+.|||||||||+.+.+...+.+ ..|.++|+..++.+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P---~~GeI~i~G~~i~~ 74 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRP---DKGEILIDGEDIPQ 74 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCC---CCCeEEEcCcchhc
Confidence 4567788899999999999999999876643 34678888877764
No 481
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.99 E-value=0.02 Score=56.87 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=31.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... + ....|-+.++...+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 3456788999999999999999999975420 0 00135566755443
No 482
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.027 Score=57.38 Aligned_cols=47 Identities=21% Similarity=0.139 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-.+..++.|.|+|||||||+.+.|+..+.+.....|-+.++...+.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence 44567899999999999999999998765321000156778776654
No 483
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.021 Score=60.58 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++...+.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p---~~G~I~~~g~~i~ 68 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI---TSGDLFIGEKRMN 68 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 4456788999999999999999999875532 2355777665543
No 484
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.02 Score=56.90 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=31.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.|.|+|||||||+.+.|+..... +. ...|-+.++...+
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 4456789999999999999999999865420 00 0125577765443
No 485
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.02 Score=56.77 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=31.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++...+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 4456789999999999999999999864310 00 0125577765444
No 486
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.95 E-value=0.02 Score=57.31 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..........|.+.++.-.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 3456789999999999999999999876532000125677766444
No 487
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.94 E-value=0.028 Score=61.01 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=32.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+.++++.||+|+||||++..|+..+-....+..+.+|+.|.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 56888899999999999999887652001123578899998863
No 488
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.02 Score=57.21 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+..... +. .-.|.+.++...+
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 4456788999999999999999999865420 00 0025577765444
No 489
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.94 E-value=0.024 Score=52.56 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.0
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+.+.|++||||||++..++..+.. .+....+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~--~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA--RGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeCC
Confidence 677899999999999999876622 233566777774
No 490
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=94.94 E-value=0.6 Score=50.70 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=61.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-----ChhhHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-----DDMLQTAELVHQS 282 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-----~~~~y~~e~v~~~ 282 (516)
....|.+|+|.|.|.+|||.++..+-.-+.|-+ -+.-+.|.-+ .+........+ ++-..+... ..+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~--~~tk~fn~g~------yrr~~~~~~~s~~ff~p~n~~~~~l-r~~ 94 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLG--VNTKVFNVGE------YRREAVKKVDSEPFFLPDNAEASKL-RKQ 94 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhc--cccccccHHH------HHHHHhcccccccccccCChhhhhh-hHH
Confidence 346799999999999999999999988776621 1122232222 22222221000 111111111 233
Q ss_pred HHHH-HHHHHHHHH-hCCCcEEEeCCCCChHHHHHHHHHHH
Q 010176 283 STDA-ASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMAR 321 (516)
Q Consensus 283 ~~~~-a~~la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lAr 321 (516)
+... +..+..-.. ..|+..|+|+|..++..|..++.+++
T Consensus 95 ~a~~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~ 135 (438)
T KOG0234|consen 95 LALLALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAE 135 (438)
T ss_pred HHHHHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHh
Confidence 2222 223333333 46899999999999999999888874
No 491
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.02 Score=57.52 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-c-CCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~-~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... + ....|.+.++...+
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 4456789999999999999999999864310 0 00125577766554
No 492
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.93 E-value=0.027 Score=57.43 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=32.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... ..|-+.+|.-.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i~~~g~~i 71 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKP---TTGTVTVDDITI 71 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 3455678999999999999999999876532 235677766444
No 493
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.93 E-value=0.036 Score=55.31 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|.++|.|||||||+++.+.+..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g 24 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENY 24 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC
Confidence 78999999999999999997664
No 494
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.93 E-value=0.034 Score=55.18 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=30.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++..++++.|+|||||||++.+++-+.. ..+...++|..++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee 59 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE 59 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC
Confidence 4678999999999999999998765431 1134567885544
No 495
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.021 Score=56.66 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=30.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cC-CCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SG-AATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~-~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-... +. ...|-+.++...+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 3456789999999999999999999754210 00 0025577765444
No 496
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.93 E-value=0.019 Score=56.72 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir~ 255 (516)
.-.+..++.+.|+|||||||+.+.|+... .. ..|-+.++...+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~ 69 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLE 69 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCcccc
Confidence 34567899999999999999999998763 11 23557776655543
No 497
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.92 E-value=0.019 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.+.|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999876
No 498
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.021 Score=56.82 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.-....++.+.|+|||||||+.+.|+.-
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3456789999999999999999999853
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.92 E-value=0.018 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.2
Q ss_pred EEEecCCCCCHHHHHHHHHHhcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~ 237 (516)
|.+.|+||.|||++++.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999988763
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.045 Score=60.66 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=26.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+.+.|.++++.||||+||||+++.++..+.
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688899999999999999999998874
Done!