Query 010176
Match_columns 516
No_of_seqs 390 out of 1700
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gvn_B Zeta; postsegregational 99.8 2E-17 6.8E-22 166.4 18.3 169 208-432 29-207 (287)
2 1ly1_A Polynucleotide kinase; 99.6 4.6E-14 1.6E-18 128.7 16.5 142 211-415 1-146 (181)
3 2p5t_B PEZT; postsegregational 99.6 5.6E-14 1.9E-18 137.9 17.0 168 208-431 28-205 (253)
4 1ltq_A Polynucleotide kinase; 99.5 8.2E-13 2.8E-17 131.4 18.1 144 211-416 1-147 (301)
5 2rhm_A Putative kinase; P-loop 99.4 2.2E-12 7.4E-17 119.2 16.5 128 210-398 3-131 (193)
6 3zvl_A Bifunctional polynucleo 99.4 1.5E-12 5.1E-17 137.3 14.6 123 209-412 255-379 (416)
7 1knq_A Gluconate kinase; ALFA/ 99.3 3.2E-11 1.1E-15 110.4 17.1 121 209-393 5-125 (175)
8 1tev_A UMP-CMP kinase; ploop, 99.3 3.5E-10 1.2E-14 104.0 21.8 163 211-432 2-178 (196)
9 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 5.4E-11 1.9E-15 117.1 14.8 131 211-412 3-136 (260)
10 3t61_A Gluconokinase; PSI-biol 99.3 4.7E-11 1.6E-15 112.1 13.5 117 210-393 16-132 (202)
11 1ukz_A Uridylate kinase; trans 99.3 5.4E-10 1.8E-14 104.5 20.6 161 208-432 11-185 (203)
12 1qhx_A CPT, protein (chloramph 99.3 7E-11 2.4E-15 108.0 14.1 123 211-393 2-134 (178)
13 1qf9_A UMP/CMP kinase, protein 99.3 3.7E-10 1.3E-14 103.6 19.0 159 209-432 3-175 (194)
14 2vli_A Antibiotic resistance p 99.2 1.8E-11 6.2E-16 112.2 9.7 121 211-393 4-126 (183)
15 2axn_A 6-phosphofructo-2-kinas 99.2 3E-10 1E-14 123.2 20.8 132 209-395 32-171 (520)
16 4eun_A Thermoresistant glucoki 99.2 1.6E-10 5.5E-15 108.7 16.0 121 209-393 26-146 (200)
17 2c95_A Adenylate kinase 1; tra 99.2 2.2E-10 7.5E-15 105.9 15.7 159 210-432 7-177 (196)
18 3lw7_A Adenylate kinase relate 99.2 3E-10 1E-14 101.8 15.7 154 213-432 2-160 (179)
19 3cm0_A Adenylate kinase; ATP-b 99.2 5.7E-10 1.9E-14 102.6 16.5 155 211-432 3-170 (186)
20 2bwj_A Adenylate kinase 5; pho 99.2 2.3E-10 7.9E-15 106.0 13.4 88 210-312 10-105 (199)
21 2cdn_A Adenylate kinase; phosp 99.1 2.4E-09 8.4E-14 100.2 14.7 39 208-253 16-54 (201)
22 2yvu_A Probable adenylyl-sulfa 99.0 6.4E-09 2.2E-13 96.2 14.3 124 208-391 9-132 (186)
23 3fb4_A Adenylate kinase; psych 99.0 2.4E-08 8.3E-13 94.1 17.7 33 214-253 2-34 (216)
24 3kb2_A SPBC2 prophage-derived 98.9 2.2E-08 7.5E-13 90.2 16.1 35 213-254 2-36 (173)
25 2pbr_A DTMP kinase, thymidylat 98.9 3.4E-08 1.2E-12 90.7 17.5 87 214-306 2-91 (195)
26 3dl0_A Adenylate kinase; phosp 98.9 2.2E-08 7.7E-13 94.5 15.8 33 214-253 2-34 (216)
27 4gp7_A Metallophosphoesterase; 98.9 2.5E-08 8.4E-13 91.9 15.5 152 209-432 6-157 (171)
28 1aky_A Adenylate kinase; ATP:A 98.9 2E-08 6.9E-13 95.4 14.6 37 210-253 2-38 (220)
29 3uie_A Adenylyl-sulfate kinase 98.9 8.1E-09 2.8E-13 97.0 10.9 92 209-316 22-115 (200)
30 3trf_A Shikimate kinase, SK; a 98.9 7.5E-08 2.6E-12 88.4 17.2 35 212-253 5-39 (185)
31 3tlx_A Adenylate kinase 2; str 98.9 7.5E-08 2.6E-12 93.8 17.7 39 208-253 25-63 (243)
32 1m7g_A Adenylylsulfate kinase; 98.9 1.4E-08 4.7E-13 96.2 12.0 98 209-319 22-119 (211)
33 1bif_A 6-phosphofructo-2-kinas 98.8 3.4E-08 1.2E-12 105.3 16.1 106 209-322 36-147 (469)
34 2f6r_A COA synthase, bifunctio 98.8 3E-08 1E-12 98.9 14.2 37 209-253 72-108 (281)
35 2xb4_A Adenylate kinase; ATP-b 98.8 8.3E-08 2.8E-12 92.0 16.4 33 214-253 2-34 (223)
36 3vaa_A Shikimate kinase, SK; s 98.8 2E-07 6.9E-12 87.4 18.2 37 210-253 23-59 (199)
37 3umf_A Adenylate kinase; rossm 98.8 1.1E-07 3.6E-12 92.3 16.5 160 208-430 25-195 (217)
38 2qor_A Guanylate kinase; phosp 98.8 2.9E-09 9.9E-14 100.4 5.3 30 207-236 7-36 (204)
39 2bdt_A BH3686; alpha-beta prot 98.8 8.6E-08 2.9E-12 88.6 15.0 134 212-407 2-135 (189)
40 1e6c_A Shikimate kinase; phosp 98.8 1.7E-07 5.7E-12 84.8 16.3 34 213-253 3-36 (173)
41 2ze6_A Isopentenyl transferase 98.8 2.6E-08 8.9E-13 97.8 11.5 128 213-403 2-151 (253)
42 1zd8_A GTP:AMP phosphotransfer 98.7 1.3E-07 4.4E-12 90.4 14.4 37 210-253 5-41 (227)
43 2plr_A DTMP kinase, probable t 98.7 3E-07 1E-11 85.4 16.6 28 211-238 3-30 (213)
44 3be4_A Adenylate kinase; malar 98.7 3.2E-07 1.1E-11 87.3 16.7 35 212-253 5-39 (217)
45 2pt5_A Shikimate kinase, SK; a 98.7 1.6E-07 5.3E-12 84.8 13.6 34 214-254 2-35 (168)
46 2z0h_A DTMP kinase, thymidylat 98.7 4.2E-07 1.5E-11 83.7 16.5 23 214-236 2-24 (197)
47 2iyv_A Shikimate kinase, SK; t 98.7 2.5E-07 8.7E-12 84.9 14.4 34 213-253 3-36 (184)
48 1x6v_B Bifunctional 3'-phospho 98.7 1.3E-07 4.6E-12 104.7 14.1 119 210-391 50-171 (630)
49 1jjv_A Dephospho-COA kinase; P 98.7 2E-07 6.7E-12 87.4 13.2 35 212-254 2-36 (206)
50 1nks_A Adenylate kinase; therm 98.7 5.1E-07 1.7E-11 82.5 15.3 86 213-306 2-93 (194)
51 1zak_A Adenylate kinase; ATP:A 98.7 2.9E-07 9.9E-12 87.5 14.1 36 211-253 4-39 (222)
52 2wwf_A Thymidilate kinase, put 98.6 6.9E-08 2.3E-12 90.3 9.4 30 209-238 7-36 (212)
53 1nn5_A Similar to deoxythymidy 98.6 1.5E-07 5.3E-12 87.9 11.8 29 209-237 6-34 (215)
54 1ak2_A Adenylate kinase isoenz 98.6 1.8E-06 6.1E-11 82.9 19.0 38 209-253 13-50 (233)
55 3r20_A Cytidylate kinase; stru 98.6 1.1E-06 3.8E-11 86.0 17.4 38 210-254 7-44 (233)
56 1m8p_A Sulfate adenylyltransfe 98.6 3.1E-07 1.1E-11 100.8 15.0 98 209-319 393-490 (573)
57 2pez_A Bifunctional 3'-phospho 98.6 2.3E-07 7.8E-12 85.1 11.8 44 210-255 3-46 (179)
58 4eaq_A DTMP kinase, thymidylat 98.6 6.5E-07 2.2E-11 86.7 15.4 29 209-237 23-51 (229)
59 1kht_A Adenylate kinase; phosp 98.6 4.1E-07 1.4E-11 83.1 12.3 39 212-252 3-41 (192)
60 3iij_A Coilin-interacting nucl 98.6 3.1E-07 1.1E-11 84.2 11.0 38 209-253 8-45 (180)
61 1vht_A Dephospho-COA kinase; s 98.5 1.6E-06 5.3E-11 82.0 15.5 35 211-253 3-37 (218)
62 1uj2_A Uridine-cytidine kinase 98.5 1.6E-06 5.3E-11 84.5 15.8 48 208-255 18-68 (252)
63 1zp6_A Hypothetical protein AT 98.5 1.1E-06 3.7E-11 80.8 13.9 41 209-254 6-46 (191)
64 1kag_A SKI, shikimate kinase I 98.5 1.9E-06 6.4E-11 78.0 14.4 36 211-253 3-38 (173)
65 2qt1_A Nicotinamide riboside k 98.5 1.2E-06 4.2E-11 82.1 13.5 42 208-255 17-58 (207)
66 4tmk_A Protein (thymidylate ki 98.5 1.4E-05 4.7E-10 77.0 21.0 89 211-305 2-100 (213)
67 2gks_A Bifunctional SAT/APS ki 98.5 5E-07 1.7E-11 98.6 12.2 92 210-315 370-461 (546)
68 2grj_A Dephospho-COA kinase; T 98.5 5.3E-07 1.8E-11 85.4 10.4 37 211-254 11-47 (192)
69 3lv8_A DTMP kinase, thymidylat 98.5 7.4E-06 2.5E-10 80.2 18.3 94 210-305 25-122 (236)
70 4edh_A DTMP kinase, thymidylat 98.5 1.4E-05 4.8E-10 76.8 19.8 92 210-305 4-99 (213)
71 1y63_A LMAJ004144AAA protein; 98.4 2.7E-07 9.4E-12 85.5 7.2 40 208-254 6-46 (184)
72 1e4v_A Adenylate kinase; trans 98.4 1.7E-06 5.9E-11 81.7 12.7 32 214-252 2-33 (214)
73 2jaq_A Deoxyguanosine kinase; 98.4 1.1E-05 3.8E-10 74.3 17.4 24 214-237 2-25 (205)
74 1uf9_A TT1252 protein; P-loop, 98.4 1.7E-06 5.6E-11 80.1 11.7 38 209-254 5-42 (203)
75 3sr0_A Adenylate kinase; phosp 98.4 1.2E-05 4.1E-10 77.0 17.2 121 214-394 2-126 (206)
76 1via_A Shikimate kinase; struc 98.4 3.6E-06 1.2E-10 76.8 12.8 34 214-254 6-39 (175)
77 4hlc_A DTMP kinase, thymidylat 98.3 4.6E-05 1.6E-09 72.7 20.1 86 212-305 2-92 (205)
78 4i1u_A Dephospho-COA kinase; s 98.3 8.4E-06 2.9E-10 78.7 15.0 35 212-254 9-43 (210)
79 1q3t_A Cytidylate kinase; nucl 98.3 1.1E-05 3.9E-10 77.5 15.4 40 209-255 13-52 (236)
80 1cke_A CK, MSSA, protein (cyti 98.3 7.2E-06 2.5E-10 77.4 13.7 37 212-255 5-41 (227)
81 2if2_A Dephospho-COA kinase; a 98.3 3.5E-06 1.2E-10 78.5 11.3 32 214-253 3-34 (204)
82 1zuh_A Shikimate kinase; alpha 98.3 7.1E-06 2.4E-10 74.2 13.0 35 213-254 8-42 (168)
83 3ake_A Cytidylate kinase; CMP 98.3 4.7E-06 1.6E-10 77.3 11.9 35 214-255 4-38 (208)
84 1rz3_A Hypothetical protein rb 98.3 5.1E-06 1.7E-10 78.1 12.0 46 209-256 19-64 (201)
85 3v9p_A DTMP kinase, thymidylat 98.2 1.3E-05 4.4E-10 78.1 13.9 96 208-305 21-119 (227)
86 4e22_A Cytidylate kinase; P-lo 98.2 1.8E-05 6.1E-10 77.3 14.8 37 211-254 26-62 (252)
87 2h92_A Cytidylate kinase; ross 98.2 3.5E-05 1.2E-09 72.4 16.2 37 211-254 2-38 (219)
88 3c8u_A Fructokinase; YP_612366 98.2 1.2E-05 4.2E-10 75.7 13.0 43 209-253 19-61 (208)
89 3ld9_A DTMP kinase, thymidylat 98.2 1.6E-05 5.6E-10 77.2 14.1 91 208-305 17-114 (223)
90 3a00_A Guanylate kinase, GMP k 98.2 3.1E-07 1.1E-11 85.3 1.6 26 212-237 1-26 (186)
91 3gmt_A Adenylate kinase; ssgci 98.2 2.7E-05 9.1E-10 76.2 14.7 32 214-252 10-41 (230)
92 1a7j_A Phosphoribulokinase; tr 98.2 9.5E-06 3.2E-10 81.4 11.7 43 211-255 4-46 (290)
93 1ex7_A Guanylate kinase; subst 98.1 1.2E-06 4.1E-11 82.9 4.4 23 214-236 3-25 (186)
94 3a8t_A Adenylate isopentenyltr 98.1 1.3E-05 4.3E-10 82.7 11.7 37 210-253 38-74 (339)
95 3tau_A Guanylate kinase, GMP k 98.1 1.2E-06 4E-11 83.0 3.7 27 210-236 6-32 (208)
96 1gtv_A TMK, thymidylate kinase 98.1 9.1E-07 3.1E-11 82.7 2.8 24 214-237 2-25 (214)
97 3crm_A TRNA delta(2)-isopenten 98.1 2E-05 6.7E-10 80.8 12.7 36 211-253 4-39 (323)
98 3hdt_A Putative kinase; struct 98.1 7E-05 2.4E-09 72.6 15.7 37 211-254 13-49 (223)
99 3tqc_A Pantothenate kinase; bi 98.1 3E-05 1E-09 79.3 13.1 49 208-256 88-136 (321)
100 2bbw_A Adenylate kinase 4, AK4 98.0 9.1E-05 3.1E-09 71.4 15.5 27 211-237 26-52 (246)
101 3fdi_A Uncharacterized protein 98.0 7.5E-05 2.5E-09 70.8 13.7 35 212-253 6-40 (201)
102 3exa_A TRNA delta(2)-isopenten 98.0 4.8E-05 1.6E-09 77.8 13.1 85 211-306 2-101 (322)
103 1p5z_B DCK, deoxycytidine kina 98.0 6E-06 2.1E-10 80.7 6.1 29 208-236 20-48 (263)
104 3tr0_A Guanylate kinase, GMP k 98.0 0.00014 4.9E-09 67.2 14.6 27 210-236 5-31 (205)
105 1kgd_A CASK, peripheral plasma 97.9 4.4E-06 1.5E-10 77.2 3.7 26 211-236 4-29 (180)
106 2v54_A DTMP kinase, thymidylat 97.9 5.8E-05 2E-09 69.8 11.2 26 211-236 3-28 (204)
107 3hjn_A DTMP kinase, thymidylat 97.9 0.00046 1.6E-08 65.2 17.6 87 214-305 2-89 (197)
108 3nwj_A ATSK2; P loop, shikimat 97.9 6.5E-05 2.2E-09 74.0 11.4 35 212-253 48-82 (250)
109 2vp4_A Deoxynucleoside kinase; 97.8 1.1E-05 3.7E-10 77.5 4.6 28 208-235 16-43 (230)
110 2ocp_A DGK, deoxyguanosine kin 97.8 2.4E-05 8.3E-10 75.2 6.8 26 211-236 1-26 (241)
111 3cr8_A Sulfate adenylyltranfer 97.8 0.00012 3.9E-09 80.2 12.2 44 210-254 367-410 (552)
112 1s96_A Guanylate kinase, GMP k 97.7 4.5E-05 1.6E-09 73.5 6.9 30 207-236 11-40 (219)
113 3foz_A TRNA delta(2)-isopenten 97.7 6.9E-05 2.4E-09 76.5 7.7 38 209-253 7-44 (316)
114 3d3q_A TRNA delta(2)-isopenten 97.6 5.5E-05 1.9E-09 78.0 5.5 36 211-253 6-41 (340)
115 3ney_A 55 kDa erythrocyte memb 97.5 1.4E-05 4.9E-10 76.3 -0.1 29 208-236 15-43 (197)
116 3asz_A Uridine kinase; cytidin 97.4 0.00012 4.2E-09 68.3 5.0 40 210-254 4-43 (211)
117 3eph_A TRNA isopentenyltransfe 97.3 0.00029 9.8E-09 74.3 6.9 35 212-253 2-36 (409)
118 2j41_A Guanylate kinase; GMP, 97.2 0.00021 7.2E-09 66.0 3.6 27 210-236 4-30 (207)
119 3tmk_A Thymidylate kinase; pho 97.1 0.002 6.8E-08 62.1 10.2 27 211-237 4-30 (216)
120 2jeo_A Uridine-cytidine kinase 97.1 0.00035 1.2E-08 67.4 4.6 30 208-237 21-50 (245)
121 3dm5_A SRP54, signal recogniti 97.1 0.00067 2.3E-08 72.3 6.9 45 210-256 98-142 (443)
122 1sq5_A Pantothenate kinase; P- 96.9 0.00099 3.4E-08 66.9 6.6 51 209-261 77-129 (308)
123 3t15_A Ribulose bisphosphate c 96.9 0.0005 1.7E-08 68.5 3.7 38 208-250 32-69 (293)
124 1odf_A YGR205W, hypothetical 3 96.9 0.00084 2.9E-08 67.3 5.2 56 208-263 27-83 (290)
125 1g8f_A Sulfate adenylyltransfe 96.7 0.00074 2.5E-08 73.1 3.9 43 209-252 392-435 (511)
126 1vma_A Cell division protein F 96.7 0.0012 4.1E-08 66.9 5.2 47 208-256 100-146 (306)
127 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0014 4.9E-08 62.6 5.3 39 210-253 37-75 (262)
128 1lv7_A FTSH; alpha/beta domain 96.7 0.0014 4.9E-08 63.1 5.3 39 211-254 44-82 (257)
129 1lvg_A Guanylate kinase, GMP k 96.6 0.00075 2.6E-08 63.2 2.8 26 211-236 3-28 (198)
130 2x8a_A Nuclear valosin-contain 96.6 0.0016 5.4E-08 64.5 4.6 34 215-253 47-80 (274)
131 3aez_A Pantothenate kinase; tr 96.6 0.0024 8.4E-08 64.6 6.0 45 209-253 87-131 (312)
132 3lnc_A Guanylate kinase, GMP k 96.5 0.00071 2.4E-08 64.4 1.8 28 209-236 24-52 (231)
133 3h4m_A Proteasome-activating n 96.5 0.002 6.7E-08 62.8 4.9 39 210-253 49-87 (285)
134 3b9q_A Chloroplast SRP recepto 96.5 0.0026 9E-08 64.1 5.8 45 208-254 96-140 (302)
135 3b9p_A CG5977-PA, isoform A; A 96.5 0.0022 7.4E-08 62.9 5.0 38 211-253 53-90 (297)
136 3ec2_A DNA replication protein 96.5 0.0014 4.7E-08 59.7 3.3 26 211-236 37-62 (180)
137 3ch4_B Pmkase, phosphomevalona 96.5 0.018 6E-07 55.2 11.0 45 210-263 9-53 (202)
138 3e70_C DPA, signal recognition 96.4 0.0027 9.4E-08 64.8 5.6 46 209-256 126-171 (328)
139 4b4t_M 26S protease regulatory 96.4 0.0023 7.7E-08 68.0 5.1 40 209-253 212-251 (434)
140 4b4t_L 26S protease subunit RP 96.4 0.0023 7.8E-08 68.1 5.1 40 209-253 212-251 (437)
141 1rj9_A FTSY, signal recognitio 96.4 0.0028 9.4E-08 64.0 5.5 42 211-254 101-142 (304)
142 3u61_B DNA polymerase accessor 96.4 0.0027 9.4E-08 63.1 5.4 40 209-253 45-84 (324)
143 2qmh_A HPR kinase/phosphorylas 96.4 0.0022 7.5E-08 61.6 4.4 35 211-253 33-67 (205)
144 3kl4_A SRP54, signal recogniti 96.4 0.0024 8.3E-08 67.7 5.1 45 210-256 95-139 (433)
145 4b4t_K 26S protease regulatory 96.4 0.0025 8.5E-08 67.6 5.1 39 210-253 204-242 (428)
146 1jbk_A CLPB protein; beta barr 96.4 0.0019 6.5E-08 57.4 3.7 27 210-236 41-67 (195)
147 3bos_A Putative DNA replicatio 96.4 0.0028 9.6E-08 59.0 4.9 42 211-254 51-92 (242)
148 1znw_A Guanylate kinase, GMP k 96.4 0.0018 6.2E-08 60.6 3.6 28 209-236 17-44 (207)
149 3tif_A Uncharacterized ABC tra 96.4 0.0017 5.9E-08 62.9 3.5 46 207-255 26-71 (235)
150 4b4t_J 26S protease regulatory 96.4 0.0062 2.1E-07 64.1 7.9 39 210-253 180-218 (405)
151 1z6g_A Guanylate kinase; struc 96.3 0.0016 5.6E-08 61.9 3.0 28 209-236 20-47 (218)
152 2og2_A Putative signal recogni 96.3 0.0036 1.2E-07 64.8 5.8 45 208-254 153-197 (359)
153 1zu4_A FTSY; GTPase, signal re 96.3 0.0036 1.2E-07 63.7 5.6 47 208-256 101-147 (320)
154 2eyu_A Twitching motility prot 96.3 0.0028 9.6E-08 62.5 4.6 42 210-253 23-64 (261)
155 3cf0_A Transitional endoplasmi 96.3 0.004 1.4E-07 62.0 5.6 35 210-249 47-81 (301)
156 1ofh_A ATP-dependent HSL prote 96.3 0.0029 1E-07 61.7 4.6 39 211-254 49-87 (310)
157 2cvh_A DNA repair and recombin 96.3 0.0036 1.2E-07 58.0 4.9 38 210-252 18-55 (220)
158 1of1_A Thymidine kinase; trans 96.3 0.019 6.6E-07 59.8 10.8 28 210-237 47-74 (376)
159 2ehv_A Hypothetical protein PH 96.2 0.002 6.9E-08 60.9 3.0 40 210-252 28-69 (251)
160 3czq_A Putative polyphosphate 96.2 0.012 4E-07 59.8 8.7 167 210-432 84-259 (304)
161 2v1u_A Cell division control p 96.2 0.0042 1.4E-07 62.2 5.4 48 209-256 41-92 (387)
162 1mv5_A LMRA, multidrug resista 96.2 0.003 1E-07 61.4 4.1 45 206-253 22-66 (243)
163 1ye8_A Protein THEP1, hypothet 96.2 0.0024 8.4E-08 59.2 3.3 23 214-236 2-24 (178)
164 1d2n_A N-ethylmaleimide-sensit 96.2 0.0044 1.5E-07 60.2 5.3 29 209-237 61-89 (272)
165 1ixz_A ATP-dependent metallopr 96.2 0.0026 9E-08 61.1 3.6 31 215-250 52-82 (254)
166 1e2k_A Thymidine kinase; trans 96.2 0.02 6.8E-07 58.7 10.3 27 211-237 3-29 (331)
167 2kjq_A DNAA-related protein; s 96.2 0.0039 1.3E-07 56.1 4.4 42 211-254 35-76 (149)
168 1htw_A HI0065; nucleotide-bind 96.2 0.0035 1.2E-07 57.3 4.1 28 209-236 30-57 (158)
169 2yhs_A FTSY, cell division pro 96.1 0.0049 1.7E-07 66.6 5.8 45 208-255 289-334 (503)
170 2px0_A Flagellar biosynthesis 96.1 0.0046 1.6E-07 62.1 5.2 46 210-256 103-148 (296)
171 4b4t_H 26S protease regulatory 96.1 0.0039 1.3E-07 66.7 4.9 39 210-253 241-279 (467)
172 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0044 1.5E-07 62.6 5.0 40 210-253 43-82 (322)
173 4a74_A DNA repair and recombin 96.1 0.0027 9.2E-08 59.2 3.2 43 210-252 23-69 (231)
174 4g1u_C Hemin import ATP-bindin 96.1 0.0027 9.1E-08 62.9 3.3 45 208-255 33-77 (266)
175 1sxj_A Activator 1 95 kDa subu 96.1 0.0052 1.8E-07 66.0 5.8 45 211-260 76-120 (516)
176 3eie_A Vacuolar protein sortin 96.1 0.0032 1.1E-07 63.2 3.6 35 211-250 50-84 (322)
177 2p65_A Hypothetical protein PF 96.1 0.0027 9.1E-08 56.6 2.7 26 211-236 42-67 (187)
178 4b4t_I 26S protease regulatory 96.0 0.0051 1.7E-07 65.3 5.2 41 209-254 213-253 (437)
179 1njg_A DNA polymerase III subu 96.0 0.0038 1.3E-07 57.4 3.7 28 210-237 43-70 (250)
180 3te6_A Regulatory protein SIR3 96.0 0.0051 1.8E-07 62.7 5.0 55 208-262 41-100 (318)
181 2chg_A Replication factor C sm 96.0 0.0064 2.2E-07 55.3 5.1 22 215-236 41-62 (226)
182 2dr3_A UPF0273 protein PH0284; 96.0 0.0043 1.5E-07 58.4 4.1 40 211-252 22-61 (247)
183 1yrb_A ATP(GTP)binding protein 96.0 0.0087 3E-07 57.3 6.2 42 208-252 10-51 (262)
184 3pfi_A Holliday junction ATP-d 96.0 0.0077 2.6E-07 60.1 6.0 38 212-254 55-92 (338)
185 2pcj_A ABC transporter, lipopr 96.0 0.0029 9.8E-08 60.8 2.6 44 208-254 26-69 (224)
186 1p6x_A Thymidine kinase; P-loo 95.9 0.091 3.1E-06 53.9 13.9 27 211-237 6-32 (334)
187 3d8b_A Fidgetin-like protein 1 95.9 0.0056 1.9E-07 62.5 4.9 39 210-253 115-153 (357)
188 1in4_A RUVB, holliday junction 95.9 0.0055 1.9E-07 62.0 4.8 27 211-237 50-76 (334)
189 1xjc_A MOBB protein homolog; s 95.9 0.0041 1.4E-07 57.8 3.5 25 212-236 4-28 (169)
190 1c9k_A COBU, adenosylcobinamid 95.9 0.0039 1.3E-07 58.6 3.4 32 214-251 1-32 (180)
191 2ixe_A Antigen peptide transpo 95.9 0.0037 1.3E-07 61.9 3.4 46 206-254 39-84 (271)
192 3gfo_A Cobalt import ATP-bindi 95.9 0.0043 1.5E-07 61.7 3.8 43 208-253 30-72 (275)
193 2w58_A DNAI, primosome compone 95.9 0.0042 1.4E-07 57.3 3.5 37 212-250 54-90 (202)
194 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0039 1.3E-07 57.9 3.2 40 211-252 22-61 (235)
195 1b0u_A Histidine permease; ABC 95.9 0.0037 1.3E-07 61.6 3.2 44 207-253 27-70 (262)
196 2cbz_A Multidrug resistance-as 95.9 0.0034 1.2E-07 60.9 2.9 29 208-236 27-55 (237)
197 1iy2_A ATP-dependent metallopr 95.9 0.0045 1.5E-07 60.5 3.7 31 215-250 76-106 (278)
198 2ff7_A Alpha-hemolysin translo 95.9 0.0034 1.2E-07 61.3 2.8 44 208-254 31-74 (247)
199 2r62_A Cell division protease 95.9 0.0021 7.2E-08 62.1 1.3 37 212-253 44-80 (268)
200 1g6h_A High-affinity branched- 95.8 0.0036 1.2E-07 61.4 2.9 44 208-254 29-72 (257)
201 2onk_A Molybdate/tungstate ABC 95.8 0.0047 1.6E-07 60.1 3.7 42 208-253 21-62 (240)
202 3kta_A Chromosome segregation 95.8 0.0042 1.4E-07 56.4 3.2 26 212-237 26-51 (182)
203 2pze_A Cystic fibrosis transme 95.8 0.0036 1.2E-07 60.3 2.8 39 208-249 30-68 (229)
204 1ji0_A ABC transporter; ATP bi 95.8 0.0036 1.2E-07 60.7 2.9 44 208-254 28-71 (240)
205 4fcw_A Chaperone protein CLPB; 95.8 0.01 3.5E-07 58.2 6.1 42 213-256 48-89 (311)
206 2f1r_A Molybdopterin-guanine d 95.8 0.0025 8.5E-08 59.1 1.4 41 213-253 3-43 (171)
207 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0069 2.4E-07 59.7 4.8 38 211-253 37-74 (324)
208 3syl_A Protein CBBX; photosynt 95.8 0.007 2.4E-07 59.4 4.7 44 210-253 65-110 (309)
209 2olj_A Amino acid ABC transpor 95.8 0.0043 1.5E-07 61.3 3.2 46 205-253 43-88 (263)
210 1sgw_A Putative ABC transporte 95.8 0.0032 1.1E-07 60.4 2.1 43 208-253 31-73 (214)
211 1l8q_A Chromosomal replication 95.8 0.004 1.4E-07 62.1 2.9 41 211-253 36-76 (324)
212 1np6_A Molybdopterin-guanine d 95.8 0.0054 1.9E-07 57.0 3.6 25 212-236 6-30 (174)
213 1vpl_A ABC transporter, ATP-bi 95.7 0.0048 1.6E-07 60.7 3.3 45 207-254 36-80 (256)
214 1fnn_A CDC6P, cell division co 95.7 0.011 3.7E-07 59.5 6.0 40 214-254 46-85 (389)
215 3nh6_A ATP-binding cassette SU 95.7 0.0035 1.2E-07 63.5 2.3 47 207-256 75-121 (306)
216 2qby_B CDC6 homolog 3, cell di 95.7 0.0078 2.7E-07 60.6 4.8 28 209-236 42-69 (384)
217 2yz2_A Putative ABC transporte 95.7 0.005 1.7E-07 60.7 3.2 44 207-253 28-71 (266)
218 2xxa_A Signal recognition part 95.7 0.0099 3.4E-07 63.0 5.7 46 209-256 97-143 (433)
219 2qby_A CDC6 homolog 1, cell di 95.7 0.007 2.4E-07 60.4 4.3 45 209-253 42-87 (386)
220 3hws_A ATP-dependent CLP prote 95.6 0.0073 2.5E-07 61.4 4.2 35 211-250 50-84 (363)
221 2ihy_A ABC transporter, ATP-bi 95.6 0.0052 1.8E-07 61.2 3.0 45 207-254 42-86 (279)
222 1p9r_A General secretion pathw 95.6 0.01 3.5E-07 62.5 5.5 40 211-253 166-205 (418)
223 3n70_A Transport activator; si 95.6 0.01 3.4E-07 52.5 4.6 36 215-253 27-62 (145)
224 1g41_A Heat shock protein HSLU 95.5 0.0087 3E-07 63.7 4.6 39 211-254 49-87 (444)
225 1um8_A ATP-dependent CLP prote 95.5 0.0095 3.3E-07 60.8 4.8 37 212-253 72-108 (376)
226 3vfd_A Spastin; ATPase, microt 95.5 0.01 3.5E-07 61.1 5.0 38 212-254 148-185 (389)
227 1n0w_A DNA repair protein RAD5 95.5 0.0059 2E-07 57.5 2.9 43 210-252 22-68 (243)
228 1svm_A Large T antigen; AAA+ f 95.5 0.0072 2.5E-07 62.9 3.7 29 208-236 165-193 (377)
229 2d2e_A SUFC protein; ABC-ATPas 95.5 0.006 2.1E-07 59.5 2.9 44 208-254 25-70 (250)
230 2ghi_A Transport protein; mult 95.5 0.006 2.1E-07 60.0 3.0 46 205-254 39-84 (260)
231 2zu0_C Probable ATP-dependent 95.5 0.007 2.4E-07 59.7 3.4 45 207-254 41-87 (267)
232 2qp9_X Vacuolar protein sortin 95.4 0.0065 2.2E-07 62.1 3.1 35 211-250 83-117 (355)
233 2gza_A Type IV secretion syste 95.4 0.0086 2.9E-07 61.6 3.9 35 212-249 175-209 (361)
234 3cf2_A TER ATPase, transitiona 95.4 0.015 5E-07 66.3 6.1 30 209-238 235-264 (806)
235 2ffh_A Protein (FFH); SRP54, s 95.4 0.014 4.9E-07 61.6 5.7 44 211-256 97-140 (425)
236 1cr0_A DNA primase/helicase; R 95.4 0.0082 2.8E-07 59.1 3.6 42 209-251 32-73 (296)
237 2zan_A Vacuolar protein sortin 95.4 0.011 3.8E-07 62.3 4.8 39 211-253 166-204 (444)
238 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.0096 3.3E-07 53.5 3.7 25 212-236 23-47 (149)
239 2ce7_A Cell division protein F 95.4 0.012 4.2E-07 63.1 5.0 38 211-253 48-85 (476)
240 2v3c_C SRP54, signal recogniti 95.3 0.0057 1.9E-07 64.8 2.4 44 210-255 97-140 (432)
241 2r2a_A Uncharacterized protein 95.3 0.0097 3.3E-07 56.4 3.7 26 210-235 3-28 (199)
242 1j8m_F SRP54, signal recogniti 95.3 0.012 4.1E-07 59.1 4.5 43 212-256 98-140 (297)
243 2qi9_C Vitamin B12 import ATP- 95.3 0.0063 2.1E-07 59.6 2.4 43 208-254 22-64 (249)
244 3b85_A Phosphate starvation-in 95.3 0.0072 2.5E-07 57.6 2.8 24 212-235 22-45 (208)
245 3d31_A Sulfate/molybdate ABC t 95.3 0.007 2.4E-07 62.3 2.8 51 207-260 21-71 (348)
246 1ls1_A Signal recognition part 95.3 0.015 5.1E-07 58.2 5.1 43 211-255 97-139 (295)
247 2j37_W Signal recognition part 95.3 0.012 4.3E-07 63.5 4.8 45 210-256 99-143 (504)
248 3jvv_A Twitching mobility prot 95.3 0.011 3.6E-07 61.1 4.1 26 212-237 123-148 (356)
249 2nq2_C Hypothetical ABC transp 95.2 0.0068 2.3E-07 59.4 2.3 29 208-236 27-55 (253)
250 3tui_C Methionine import ATP-b 95.2 0.01 3.6E-07 61.6 3.9 49 204-255 46-94 (366)
251 2c9o_A RUVB-like 1; hexameric 95.2 0.015 5.1E-07 61.4 5.2 40 211-253 62-101 (456)
252 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0092 3.2E-07 61.8 3.4 43 208-253 26-68 (359)
253 1sxj_E Activator 1 40 kDa subu 95.2 0.0089 3E-07 59.8 3.2 27 209-236 34-60 (354)
254 2v9p_A Replication protein E1; 95.2 0.0081 2.8E-07 60.9 2.9 30 207-236 121-150 (305)
255 2ewv_A Twitching motility prot 95.2 0.011 3.9E-07 61.0 4.0 28 210-237 134-161 (372)
256 2pjz_A Hypothetical protein ST 95.2 0.0093 3.2E-07 58.9 3.1 42 207-253 26-67 (263)
257 1nij_A Hypothetical protein YJ 95.2 0.015 5E-07 58.6 4.6 24 213-236 5-28 (318)
258 3rlf_A Maltose/maltodextrin im 95.2 0.011 3.8E-07 61.7 3.9 44 208-254 25-68 (381)
259 3tqf_A HPR(Ser) kinase; transf 95.2 0.014 4.8E-07 54.9 4.1 25 211-235 15-39 (181)
260 1dek_A Deoxynucleoside monopho 95.2 0.023 7.7E-07 55.6 5.8 25 213-237 2-26 (241)
261 3p32_A Probable GTPase RV1496/ 95.1 0.02 6.9E-07 58.4 5.6 42 209-252 76-117 (355)
262 2bjv_A PSP operon transcriptio 95.1 0.026 9E-07 54.3 6.2 50 213-265 30-79 (265)
263 3hr8_A Protein RECA; alpha and 95.1 0.014 4.8E-07 60.4 4.4 42 211-254 60-101 (356)
264 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.01 3.5E-07 60.3 3.3 35 212-249 171-205 (330)
265 2i3b_A HCR-ntpase, human cance 95.1 0.0097 3.3E-07 55.8 2.9 23 214-236 3-25 (189)
266 3uk6_A RUVB-like 2; hexameric 95.1 0.01 3.6E-07 59.6 3.3 26 212-237 70-95 (368)
267 2orw_A Thymidine kinase; TMTK, 95.1 0.012 4.1E-07 54.7 3.5 25 212-236 3-27 (184)
268 2it1_A 362AA long hypothetical 95.1 0.012 4.3E-07 60.8 3.9 45 207-254 24-68 (362)
269 2yyz_A Sugar ABC transporter, 95.1 0.013 4.3E-07 60.7 3.9 44 207-253 24-67 (359)
270 1nlf_A Regulatory protein REPA 95.0 0.011 3.8E-07 57.8 3.1 27 210-236 28-54 (279)
271 2dhr_A FTSH; AAA+ protein, hex 95.0 0.019 6.5E-07 61.9 5.1 37 212-253 64-100 (499)
272 1z47_A CYSA, putative ABC-tran 95.0 0.012 4E-07 60.9 3.3 43 208-253 37-79 (355)
273 1v43_A Sugar-binding transport 94.9 0.014 4.7E-07 60.7 3.7 44 207-253 32-75 (372)
274 1tue_A Replication protein E1; 94.9 0.011 3.7E-07 57.1 2.7 26 212-237 58-83 (212)
275 3sop_A Neuronal-specific septi 94.8 0.013 4.6E-07 57.9 3.2 23 214-236 4-26 (270)
276 2bbs_A Cystic fibrosis transme 94.8 0.012 4E-07 59.0 2.8 32 205-236 57-88 (290)
277 1sxj_C Activator 1 40 kDa subu 94.8 0.013 4.6E-07 58.8 3.2 25 212-237 47-71 (340)
278 3b5x_A Lipid A export ATP-bind 94.8 0.018 6.2E-07 62.8 4.4 45 208-255 365-409 (582)
279 2wsm_A Hydrogenase expression/ 94.8 0.04 1.4E-06 51.1 6.2 39 211-252 29-67 (221)
280 1g29_1 MALK, maltose transport 94.7 0.014 4.6E-07 60.7 3.1 43 208-253 25-67 (372)
281 3hu3_A Transitional endoplasmi 94.7 0.016 5.6E-07 62.1 3.8 36 210-250 236-271 (489)
282 3m6a_A ATP-dependent protease 94.7 0.021 7.3E-07 61.9 4.7 38 211-253 107-144 (543)
283 2oap_1 GSPE-2, type II secreti 94.7 0.017 5.9E-07 62.3 3.8 40 211-253 259-299 (511)
284 3qks_A DNA double-strand break 94.7 0.019 6.5E-07 54.1 3.7 26 211-236 22-47 (203)
285 1ypw_A Transitional endoplasmi 94.7 0.016 5.4E-07 65.9 3.6 37 209-250 235-271 (806)
286 2zr9_A Protein RECA, recombina 94.6 0.02 6.7E-07 58.8 4.0 40 211-252 60-99 (349)
287 2qm8_A GTPase/ATPase; G protei 94.6 0.025 8.5E-07 57.6 4.7 29 208-236 51-79 (337)
288 3b60_A Lipid A export ATP-bind 94.6 0.017 5.8E-07 63.0 3.5 43 210-255 367-409 (582)
289 1jr3_A DNA polymerase III subu 94.5 0.02 6.9E-07 57.3 3.7 28 210-237 36-63 (373)
290 3i1a_A Spectinomycin phosphotr 94.5 0.012 4.3E-07 59.3 2.2 56 94-165 207-270 (339)
291 2zts_A Putative uncharacterize 94.5 0.019 6.5E-07 54.0 3.3 26 210-235 28-53 (251)
292 1v5w_A DMC1, meiotic recombina 94.5 0.042 1.4E-06 55.9 6.1 43 210-252 120-166 (343)
293 3qf4_B Uncharacterized ABC tra 94.5 0.017 5.8E-07 63.3 3.3 45 209-256 378-422 (598)
294 2b8t_A Thymidine kinase; deoxy 94.5 0.024 8.2E-07 54.8 4.0 37 210-248 10-46 (223)
295 2z4s_A Chromosomal replication 94.5 0.018 6.2E-07 60.7 3.4 42 212-253 130-171 (440)
296 1oxx_K GLCV, glucose, ABC tran 94.5 0.011 3.8E-07 60.9 1.6 43 208-253 27-69 (353)
297 1sxj_D Activator 1 41 kDa subu 94.4 0.02 6.7E-07 57.0 3.3 22 215-236 61-82 (353)
298 4a82_A Cystic fibrosis transme 94.4 0.013 4.4E-07 64.0 2.0 45 209-256 364-408 (578)
299 2wjg_A FEOB, ferrous iron tran 94.3 0.029 9.8E-07 50.3 3.8 26 210-235 5-30 (188)
300 2r44_A Uncharacterized protein 94.3 0.022 7.6E-07 56.7 3.4 24 214-237 48-71 (331)
301 1u94_A RECA protein, recombina 94.3 0.028 9.4E-07 58.0 4.1 40 211-252 62-101 (356)
302 2ga8_A Hypothetical 39.9 kDa p 94.3 0.029 9.9E-07 58.2 4.2 31 374-404 291-321 (359)
303 2yl4_A ATP-binding cassette SU 94.3 0.018 6.2E-07 63.0 2.8 44 209-255 367-410 (595)
304 1lw7_A Transcriptional regulat 94.2 0.022 7.4E-07 58.3 3.2 26 212-237 170-195 (365)
305 3pvs_A Replication-associated 94.2 0.031 1E-06 59.3 4.4 25 213-237 51-75 (447)
306 1w5s_A Origin recognition comp 94.2 0.05 1.7E-06 55.1 5.9 27 210-236 48-76 (412)
307 2z43_A DNA repair and recombin 94.2 0.032 1.1E-06 56.2 4.3 42 211-252 106-151 (324)
308 3co5_A Putative two-component 94.2 0.012 4.2E-07 51.9 1.1 22 215-236 30-51 (143)
309 3qf4_A ABC transporter, ATP-bi 94.2 0.02 6.9E-07 62.6 3.0 44 210-256 367-410 (587)
310 3czp_A Putative polyphosphate 94.2 0.31 1.1E-05 52.5 12.2 167 209-432 40-216 (500)
311 3qkt_A DNA double-strand break 94.2 0.028 9.5E-07 57.0 3.8 26 211-236 22-47 (339)
312 2hf9_A Probable hydrogenase ni 94.1 0.046 1.6E-06 50.8 5.0 26 211-236 37-62 (226)
313 1tf7_A KAIC; homohexamer, hexa 94.1 0.031 1E-06 60.1 4.3 40 210-252 37-78 (525)
314 1xx6_A Thymidine kinase; NESG, 94.1 0.038 1.3E-06 52.0 4.4 37 210-248 6-42 (191)
315 2chq_A Replication factor C sm 94.1 0.028 9.6E-07 54.8 3.6 25 211-236 38-62 (319)
316 3qf7_A RAD50; ABC-ATPase, ATPa 94.1 0.029 9.9E-07 57.7 3.8 24 212-235 23-46 (365)
317 3gd7_A Fusion complex of cysti 94.1 0.025 8.5E-07 59.1 3.3 46 207-256 42-87 (390)
318 1iqp_A RFCS; clamp loader, ext 94.0 0.032 1.1E-06 54.6 3.9 22 215-236 49-70 (327)
319 1pzn_A RAD51, DNA repair and r 94.0 0.025 8.6E-07 57.9 3.2 44 210-253 129-176 (349)
320 2fna_A Conserved hypothetical 94.0 0.041 1.4E-06 54.1 4.7 35 214-253 32-66 (357)
321 1ojl_A Transcriptional regulat 94.0 0.06 2.1E-06 53.8 5.9 51 213-266 26-76 (304)
322 1oix_A RAS-related protein RAB 94.0 0.029 1E-06 51.2 3.3 25 212-236 29-53 (191)
323 2fn4_A P23, RAS-related protei 94.0 0.036 1.2E-06 48.8 3.7 27 210-236 7-33 (181)
324 2f9l_A RAB11B, member RAS onco 93.9 0.03 1E-06 51.3 3.2 24 213-236 6-29 (199)
325 1sxj_B Activator 1 37 kDa subu 93.9 0.033 1.1E-06 54.4 3.7 25 211-236 42-66 (323)
326 1pui_A ENGB, probable GTP-bind 93.9 0.021 7.3E-07 52.3 2.2 28 208-235 22-49 (210)
327 2wji_A Ferrous iron transport 93.9 0.038 1.3E-06 49.0 3.7 24 212-235 3-26 (165)
328 1g8p_A Magnesium-chelatase 38 93.9 0.019 6.4E-07 57.1 1.8 23 215-237 48-70 (350)
329 2p67_A LAO/AO transport system 93.8 0.048 1.6E-06 55.4 4.8 43 209-253 53-95 (341)
330 3lda_A DNA repair protein RAD5 93.8 0.073 2.5E-06 55.7 6.3 42 211-252 177-222 (400)
331 2orv_A Thymidine kinase; TP4A 93.7 0.06 2E-06 52.6 5.0 43 204-248 11-53 (234)
332 2qgz_A Helicase loader, putati 93.7 0.037 1.3E-06 55.5 3.6 37 212-250 152-189 (308)
333 3ozx_A RNAse L inhibitor; ATP 93.7 0.035 1.2E-06 60.3 3.6 29 208-236 21-49 (538)
334 1nrj_B SR-beta, signal recogni 93.6 0.042 1.4E-06 50.7 3.7 26 211-236 11-36 (218)
335 2www_A Methylmalonic aciduria 93.5 0.045 1.5E-06 55.9 4.0 26 211-236 73-98 (349)
336 3bh0_A DNAB-like replicative h 93.5 0.04 1.4E-06 55.4 3.6 40 210-251 66-105 (315)
337 1xp8_A RECA protein, recombina 93.5 0.044 1.5E-06 56.7 4.0 40 211-252 73-112 (366)
338 1ky3_A GTP-binding protein YPT 93.5 0.047 1.6E-06 48.1 3.6 27 210-236 6-32 (182)
339 2dyk_A GTP-binding protein; GT 93.4 0.042 1.4E-06 47.6 3.1 22 215-236 4-25 (161)
340 2ce2_X GTPase HRAS; signaling 93.4 0.05 1.7E-06 46.8 3.5 24 213-236 4-27 (166)
341 1z2a_A RAS-related protein RAB 93.4 0.05 1.7E-06 47.3 3.5 25 212-236 5-29 (168)
342 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.043 1.5E-06 56.2 3.6 34 212-250 123-156 (331)
343 2lkc_A Translation initiation 93.4 0.05 1.7E-06 48.0 3.6 27 210-236 6-32 (178)
344 2r8r_A Sensor protein; KDPD, P 93.3 0.07 2.4E-06 51.9 4.7 40 213-254 7-46 (228)
345 2yv5_A YJEQ protein; hydrolase 93.3 0.043 1.5E-06 54.9 3.3 25 211-236 164-188 (302)
346 1kao_A RAP2A; GTP-binding prot 93.2 0.061 2.1E-06 46.4 3.8 25 212-236 3-27 (167)
347 2ged_A SR-beta, signal recogni 93.2 0.055 1.9E-06 48.7 3.6 26 211-236 47-72 (193)
348 3czp_A Putative polyphosphate 93.2 0.24 8.2E-06 53.4 9.1 160 208-424 296-461 (500)
349 2npi_A Protein CLP1; CLP1-PCF1 93.2 0.038 1.3E-06 58.9 2.9 26 211-236 137-162 (460)
350 3clv_A RAB5 protein, putative; 93.2 0.068 2.3E-06 47.7 4.2 27 210-236 5-31 (208)
351 3euj_A Chromosome partition pr 93.2 0.048 1.6E-06 58.6 3.6 26 210-236 28-53 (483)
352 4ag6_A VIRB4 ATPase, type IV s 93.2 0.07 2.4E-06 54.8 4.8 36 214-251 37-72 (392)
353 2hxs_A RAB-26, RAS-related pro 93.1 0.067 2.3E-06 47.1 4.0 26 210-235 4-29 (178)
354 1ek0_A Protein (GTP-binding pr 93.1 0.051 1.8E-06 47.2 3.1 24 213-236 4-27 (170)
355 1u8z_A RAS-related protein RAL 93.1 0.066 2.3E-06 46.2 3.8 25 212-236 4-28 (168)
356 3tkl_A RAS-related protein RAB 93.1 0.054 1.9E-06 48.7 3.4 26 211-236 15-40 (196)
357 2qen_A Walker-type ATPase; unk 93.1 0.071 2.4E-06 52.4 4.5 33 213-252 32-64 (350)
358 2i1q_A DNA repair and recombin 93.0 0.048 1.6E-06 54.5 3.2 26 210-235 96-121 (322)
359 1yqt_A RNAse L inhibitor; ATP- 93.0 0.047 1.6E-06 59.2 3.4 27 210-236 45-71 (538)
360 1ko7_A HPR kinase/phosphatase; 93.0 0.065 2.2E-06 54.5 4.2 25 211-235 143-167 (314)
361 2j9r_A Thymidine kinase; TK1, 93.0 0.097 3.3E-06 50.5 5.2 37 210-248 26-62 (214)
362 3kkq_A RAS-related protein M-R 93.0 0.069 2.4E-06 47.5 3.9 26 211-236 17-42 (183)
363 1a5t_A Delta prime, HOLB; zinc 93.0 0.058 2E-06 54.3 3.8 31 208-238 20-50 (334)
364 1upt_A ARL1, ADP-ribosylation 93.0 0.074 2.5E-06 46.4 4.0 27 210-236 5-31 (171)
365 1z0j_A RAB-22, RAS-related pro 92.9 0.055 1.9E-06 47.1 3.1 25 212-236 6-30 (170)
366 2qag_B Septin-6, protein NEDD5 92.9 0.047 1.6E-06 57.8 3.1 28 208-235 36-65 (427)
367 2gj8_A MNME, tRNA modification 92.9 0.061 2.1E-06 48.2 3.5 24 212-235 4-27 (172)
368 1e69_A Chromosome segregation 92.9 0.042 1.5E-06 55.1 2.6 23 212-234 24-46 (322)
369 1r6b_X CLPA protein; AAA+, N-t 92.9 0.076 2.6E-06 59.3 4.9 41 210-255 485-526 (758)
370 2r6a_A DNAB helicase, replicat 92.8 0.059 2E-06 56.8 3.7 41 210-251 201-241 (454)
371 2erx_A GTP-binding protein DI- 92.8 0.057 2E-06 47.0 3.1 23 213-235 4-26 (172)
372 3iqw_A Tail-anchored protein t 92.8 0.11 3.9E-06 52.9 5.7 42 209-252 13-54 (334)
373 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.058 2E-06 47.5 3.1 25 212-236 7-31 (177)
374 3rhf_A Putative polyphosphate 92.8 0.23 8E-06 49.9 7.8 128 210-394 73-202 (289)
375 3io5_A Recombination and repai 92.8 0.079 2.7E-06 54.3 4.4 39 214-252 30-68 (333)
376 1ypw_A Transitional endoplasmi 92.8 0.032 1.1E-06 63.5 1.6 39 210-253 509-547 (806)
377 3con_A GTPase NRAS; structural 92.8 0.06 2.1E-06 48.3 3.2 26 211-236 20-45 (190)
378 1g16_A RAS-related protein SEC 92.8 0.059 2E-06 46.9 3.1 24 213-236 4-27 (170)
379 3ug7_A Arsenical pump-driving 92.7 0.095 3.2E-06 53.4 5.0 43 208-252 22-64 (349)
380 2rcn_A Probable GTPase ENGC; Y 92.7 0.056 1.9E-06 55.9 3.3 26 211-236 214-239 (358)
381 3auy_A DNA double-strand break 92.7 0.059 2E-06 55.2 3.5 24 211-234 24-47 (371)
382 2zej_A Dardarin, leucine-rich 92.7 0.056 1.9E-06 48.8 2.9 21 214-234 4-24 (184)
383 1u0j_A DNA replication protein 92.7 0.072 2.5E-06 53.0 3.8 25 212-236 104-128 (267)
384 2h17_A ADP-ribosylation factor 92.6 0.058 2E-06 48.3 2.9 27 210-236 19-45 (181)
385 1w1w_A Structural maintenance 92.6 0.057 2E-06 56.3 3.3 27 210-236 24-50 (430)
386 1svi_A GTP-binding protein YSX 92.6 0.08 2.7E-06 47.6 3.8 25 211-235 22-46 (195)
387 3iev_A GTP-binding protein ERA 92.6 0.061 2.1E-06 53.8 3.3 30 207-236 5-34 (308)
388 3zq6_A Putative arsenical pump 92.6 0.088 3E-06 53.0 4.5 40 211-252 13-52 (324)
389 1tq4_A IIGP1, interferon-induc 92.6 0.065 2.2E-06 56.4 3.6 26 211-236 68-93 (413)
390 3pxi_A Negative regulator of g 92.6 0.1 3.5E-06 58.5 5.4 44 210-255 518-562 (758)
391 1kjw_A Postsynaptic density pr 92.6 0.094 3.2E-06 52.6 4.6 25 209-236 102-126 (295)
392 1knx_A Probable HPR(Ser) kinas 92.6 0.074 2.5E-06 54.1 3.8 25 211-235 146-170 (312)
393 4f4c_A Multidrug resistance pr 92.5 0.053 1.8E-06 64.9 3.2 110 210-323 442-569 (1321)
394 1z06_A RAS-related protein RAB 92.5 0.079 2.7E-06 47.7 3.7 27 210-236 18-44 (189)
395 1c1y_A RAS-related protein RAP 92.5 0.083 2.8E-06 45.8 3.7 24 213-236 4-27 (167)
396 1yqt_A RNAse L inhibitor; ATP- 92.5 0.056 1.9E-06 58.6 3.0 27 210-236 310-336 (538)
397 3lxx_A GTPase IMAP family memb 92.4 0.074 2.5E-06 50.4 3.5 27 210-236 27-53 (239)
398 1z08_A RAS-related protein RAB 92.4 0.071 2.4E-06 46.5 3.1 25 212-236 6-30 (170)
399 1vg8_A RAS-related protein RAB 92.4 0.079 2.7E-06 48.1 3.6 27 210-236 6-32 (207)
400 3q85_A GTP-binding protein REM 92.4 0.07 2.4E-06 46.6 3.1 20 215-234 5-24 (169)
401 2nzj_A GTP-binding protein REM 92.4 0.085 2.9E-06 46.2 3.6 24 212-235 4-27 (175)
402 1r2q_A RAS-related protein RAB 92.4 0.074 2.5E-06 46.1 3.2 25 212-236 6-30 (170)
403 1u0l_A Probable GTPase ENGC; p 92.4 0.064 2.2E-06 53.5 3.2 25 212-236 169-193 (301)
404 1z0f_A RAB14, member RAS oncog 92.4 0.072 2.5E-06 46.8 3.1 25 212-236 15-39 (179)
405 3j16_B RLI1P; ribosome recycli 92.4 0.069 2.4E-06 58.9 3.6 28 209-236 100-127 (608)
406 1wb9_A DNA mismatch repair pro 92.4 0.068 2.3E-06 60.8 3.7 25 210-234 605-629 (800)
407 3bc1_A RAS-related protein RAB 92.4 0.075 2.6E-06 47.2 3.2 26 211-236 10-35 (195)
408 1moz_A ARL1, ADP-ribosylation 92.3 0.062 2.1E-06 47.7 2.7 25 210-234 16-40 (183)
409 3q72_A GTP-binding protein RAD 92.3 0.065 2.2E-06 46.7 2.7 20 215-234 5-24 (166)
410 1qvr_A CLPB protein; coiled co 92.3 0.099 3.4E-06 59.5 4.9 45 210-256 585-630 (854)
411 2o5v_A DNA replication and rep 92.3 0.08 2.7E-06 54.6 3.8 23 212-234 26-48 (359)
412 3tvt_A Disks large 1 tumor sup 92.3 0.044 1.5E-06 55.1 1.7 24 210-236 98-121 (292)
413 4dzz_A Plasmid partitioning pr 92.2 0.1 3.5E-06 47.6 4.1 41 212-254 2-42 (206)
414 2efe_B Small GTP-binding prote 92.2 0.078 2.7E-06 46.8 3.1 26 211-236 11-36 (181)
415 3end_A Light-independent proto 92.2 0.11 3.9E-06 51.1 4.6 42 210-253 39-80 (307)
416 1r8s_A ADP-ribosylation factor 92.1 0.087 3E-06 45.7 3.3 22 215-236 3-24 (164)
417 3bk7_A ABC transporter ATP-bin 92.1 0.072 2.5E-06 58.7 3.4 27 210-236 380-406 (607)
418 2gno_A DNA polymerase III, gam 92.1 0.18 6.3E-06 50.5 6.1 40 212-251 18-58 (305)
419 1qhl_A Protein (cell division 92.1 0.032 1.1E-06 54.0 0.5 25 213-237 28-52 (227)
420 2woo_A ATPase GET3; tail-ancho 92.1 0.14 4.8E-06 51.7 5.3 42 210-253 17-58 (329)
421 2y8e_A RAB-protein 6, GH09086P 92.1 0.077 2.6E-06 46.6 3.0 25 212-236 14-38 (179)
422 3ozx_A RNAse L inhibitor; ATP 92.1 0.057 2E-06 58.6 2.5 27 210-236 292-318 (538)
423 1fzq_A ADP-ribosylation factor 92.1 0.094 3.2E-06 47.2 3.6 26 210-235 14-39 (181)
424 2a9k_A RAS-related protein RAL 92.1 0.096 3.3E-06 46.3 3.6 26 211-236 17-42 (187)
425 3g5u_A MCG1178, multidrug resi 92.0 0.062 2.1E-06 64.1 2.9 45 209-256 413-457 (1284)
426 3cf2_A TER ATPase, transitiona 92.0 0.13 4.5E-06 58.5 5.5 29 210-238 509-537 (806)
427 2bme_A RAB4A, RAS-related prot 92.0 0.079 2.7E-06 47.1 3.0 25 212-236 10-34 (186)
428 1w4r_A Thymidine kinase; type 92.0 0.1 3.4E-06 49.7 3.8 41 208-250 16-56 (195)
429 3nbx_X ATPase RAVA; AAA+ ATPas 91.9 0.059 2E-06 58.1 2.4 22 215-236 44-65 (500)
430 1zd9_A ADP-ribosylation factor 91.9 0.091 3.1E-06 47.4 3.3 26 211-236 21-46 (188)
431 3tw8_B RAS-related protein RAB 91.9 0.085 2.9E-06 46.4 3.0 24 212-235 9-32 (181)
432 3ea0_A ATPase, para family; al 91.9 0.19 6.6E-06 47.1 5.7 40 212-253 5-45 (245)
433 3k1j_A LON protease, ATP-depen 91.9 0.076 2.6E-06 58.1 3.2 25 213-237 61-85 (604)
434 2bov_A RAla, RAS-related prote 91.9 0.11 3.7E-06 47.0 3.8 25 212-236 14-38 (206)
435 4dsu_A GTPase KRAS, isoform 2B 91.9 0.09 3.1E-06 46.7 3.2 25 212-236 4-28 (189)
436 2xtp_A GTPase IMAP family memb 91.9 0.095 3.3E-06 50.2 3.6 27 210-236 20-46 (260)
437 2g6b_A RAS-related protein RAB 91.9 0.09 3.1E-06 46.4 3.1 26 211-236 9-34 (180)
438 3pxg_A Negative regulator of g 91.9 0.083 2.8E-06 56.0 3.4 23 214-236 203-225 (468)
439 3pqc_A Probable GTP-binding pr 91.9 0.092 3.2E-06 46.8 3.2 23 214-236 25-47 (195)
440 2cxx_A Probable GTP-binding pr 91.9 0.079 2.7E-06 47.2 2.8 22 215-236 4-25 (190)
441 3bk7_A ABC transporter ATP-bin 91.9 0.07 2.4E-06 58.8 2.9 27 210-236 115-141 (607)
442 4aby_A DNA repair protein RECN 91.8 0.034 1.2E-06 57.2 0.3 28 208-236 57-84 (415)
443 3ihw_A Centg3; RAS, centaurin, 91.8 0.12 4E-06 46.9 3.9 27 210-236 18-44 (184)
444 2gf0_A GTP-binding protein DI- 91.7 0.13 4.3E-06 46.3 4.0 27 210-236 6-32 (199)
445 2oil_A CATX-8, RAS-related pro 91.7 0.093 3.2E-06 47.3 3.1 25 212-236 25-49 (193)
446 1ihu_A Arsenical pump-driving 91.7 0.14 4.7E-06 55.7 5.0 42 209-252 5-46 (589)
447 3c5c_A RAS-like protein 12; GD 91.7 0.11 3.7E-06 47.1 3.6 27 210-236 19-45 (187)
448 3cio_A ETK, tyrosine-protein k 91.7 0.14 4.7E-06 51.1 4.6 43 211-255 103-146 (299)
449 2q6t_A DNAB replication FORK h 91.7 0.095 3.3E-06 55.1 3.6 41 210-251 198-238 (444)
450 3thx_A DNA mismatch repair pro 91.7 0.091 3.1E-06 60.8 3.7 22 211-232 661-682 (934)
451 3bwd_D RAC-like GTP-binding pr 91.7 0.11 3.8E-06 45.9 3.5 27 210-236 6-32 (182)
452 3j16_B RLI1P; ribosome recycli 91.6 0.085 2.9E-06 58.2 3.3 24 213-236 379-402 (608)
453 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.1 3.5E-06 46.2 3.2 25 212-236 5-29 (186)
454 4bas_A ADP-ribosylation factor 91.6 0.1 3.5E-06 46.9 3.3 27 210-236 15-41 (199)
455 1tf7_A KAIC; homohexamer, hexa 91.6 0.086 3E-06 56.6 3.2 40 210-251 279-318 (525)
456 3t5g_A GTP-binding protein RHE 91.6 0.085 2.9E-06 46.8 2.6 25 212-236 6-30 (181)
457 4a1f_A DNAB helicase, replicat 91.5 0.1 3.5E-06 53.5 3.5 40 210-251 44-83 (338)
458 3thx_B DNA mismatch repair pro 91.4 0.074 2.5E-06 61.4 2.6 24 210-233 671-694 (918)
459 1ewq_A DNA mismatch repair pro 91.4 0.091 3.1E-06 59.5 3.3 23 212-234 576-598 (765)
460 2p5s_A RAS and EF-hand domain 91.4 0.13 4.3E-06 46.9 3.7 27 210-236 26-52 (199)
461 1ksh_A ARF-like protein 2; sma 91.3 0.13 4.4E-06 45.9 3.6 26 210-235 16-41 (186)
462 1m7b_A RND3/RHOE small GTP-bin 91.3 0.12 4.1E-06 46.4 3.4 26 211-236 6-31 (184)
463 2qnr_A Septin-2, protein NEDD5 91.3 0.083 2.8E-06 52.8 2.5 22 214-235 20-41 (301)
464 2h57_A ADP-ribosylation factor 91.2 0.1 3.4E-06 47.0 2.8 27 210-236 19-45 (190)
465 2gf9_A RAS-related protein RAB 91.1 0.12 4E-06 46.6 3.1 25 212-236 22-46 (189)
466 2a5j_A RAS-related protein RAB 91.1 0.13 4.5E-06 46.4 3.5 25 212-236 21-45 (191)
467 3e1s_A Exodeoxyribonuclease V, 91.1 0.11 3.7E-06 56.8 3.4 25 212-236 204-228 (574)
468 1x3s_A RAS-related protein RAB 91.1 0.12 4E-06 46.2 3.1 25 212-236 15-39 (195)
469 2atv_A RERG, RAS-like estrogen 91.1 0.15 5.1E-06 46.2 3.8 26 211-236 27-52 (196)
470 3t1o_A Gliding protein MGLA; G 91.1 0.13 4.3E-06 46.0 3.3 25 212-236 14-38 (198)
471 3bgw_A DNAB-like replicative h 91.1 0.12 4.1E-06 54.7 3.6 41 210-252 195-235 (444)
472 2iw3_A Elongation factor 3A; a 91.0 0.094 3.2E-06 60.9 2.9 27 208-234 457-483 (986)
473 3k9g_A PF-32 protein; ssgcid, 91.0 0.19 6.5E-06 48.3 4.7 41 211-254 27-67 (267)
474 3upu_A ATP-dependent DNA helic 91.0 0.12 4.1E-06 54.4 3.5 23 214-236 47-69 (459)
475 1m2o_B GTP-binding protein SAR 91.0 0.12 4.3E-06 46.9 3.2 25 212-236 23-47 (190)
476 3cbq_A GTP-binding protein REM 91.0 0.11 3.8E-06 47.6 2.8 23 211-233 22-44 (195)
477 1zbd_A Rabphilin-3A; G protein 90.9 0.12 4.1E-06 46.9 3.1 24 213-236 9-32 (203)
478 1zj6_A ADP-ribosylation factor 90.9 0.15 5.3E-06 45.6 3.7 26 210-235 14-39 (187)
479 3dz8_A RAS-related protein RAB 90.9 0.13 4.4E-06 46.5 3.2 24 213-236 24-47 (191)
480 3g5u_A MCG1178, multidrug resi 90.9 0.11 3.8E-06 61.9 3.5 44 210-256 1057-1100(1284)
481 3oes_A GTPase rhebl1; small GT 90.8 0.14 4.9E-06 46.6 3.5 26 211-236 23-48 (201)
482 1zcb_A G alpha I/13; GTP-bindi 90.8 0.14 4.8E-06 52.8 3.8 24 210-233 31-54 (362)
483 2obl_A ESCN; ATPase, hydrolase 90.8 0.13 4.3E-06 52.8 3.4 28 210-237 69-96 (347)
484 2fg5_A RAB-22B, RAS-related pr 90.8 0.12 4.1E-06 46.8 2.9 25 212-236 23-47 (192)
485 3io3_A DEHA2D07832P; chaperone 90.8 0.23 7.7E-06 51.0 5.2 43 209-251 15-57 (348)
486 2fh5_B SR-beta, signal recogni 90.8 0.14 4.6E-06 47.1 3.3 25 212-236 7-31 (214)
487 2ph1_A Nucleotide-binding prot 90.7 0.23 7.7E-06 47.9 4.9 42 211-254 18-59 (262)
488 1t9h_A YLOQ, probable GTPase E 90.7 0.051 1.7E-06 55.0 0.3 26 211-236 172-197 (307)
489 4f4c_A Multidrug resistance pr 90.7 0.1 3.5E-06 62.4 3.0 50 210-262 1103-1154(1321)
490 2bcg_Y Protein YP2, GTP-bindin 90.6 0.13 4.4E-06 47.0 2.9 25 212-236 8-32 (206)
491 1q57_A DNA primase/helicase; d 90.6 0.17 5.7E-06 53.9 4.3 42 210-252 240-281 (503)
492 1f6b_A SAR1; gtpases, N-termin 90.6 0.14 4.9E-06 46.9 3.3 23 212-234 25-47 (198)
493 3la6_A Tyrosine-protein kinase 90.6 0.3 1E-05 48.5 5.8 43 211-255 92-134 (286)
494 2woj_A ATPase GET3; tail-ancho 90.5 0.24 8.1E-06 50.7 5.1 43 210-252 16-58 (354)
495 3szr_A Interferon-induced GTP- 90.5 0.1 3.4E-06 57.4 2.5 24 212-236 46-69 (608)
496 1g3q_A MIND ATPase, cell divis 90.5 0.23 7.8E-06 46.5 4.6 40 212-253 3-42 (237)
497 3k53_A Ferrous iron transport 90.4 0.16 5.6E-06 49.2 3.7 24 213-236 4-27 (271)
498 3kjh_A CO dehydrogenase/acetyl 90.4 0.16 5.6E-06 47.4 3.6 36 215-252 3-38 (254)
499 1z6t_A APAF-1, apoptotic prote 90.4 0.16 5.6E-06 54.4 4.0 25 210-234 145-169 (591)
500 3reg_A RHO-like small GTPase; 90.4 0.15 5.1E-06 46.0 3.1 26 211-236 22-47 (194)
No 1
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.75 E-value=2e-17 Score=166.38 Aligned_cols=169 Identities=19% Similarity=0.262 Sum_probs=123.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHH-H
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTD-A 286 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~-~ 286 (516)
...+|.+|+|+|+|||||||+++.|++.+. .+.++|++|.++...+.+..+... ...+..+. +...+. .
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~----~~~~a~~~-~~~~~~~~ 98 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL----YEKDVVKH-VTPYSNRM 98 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH----HGGGCHHH-HHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH----ccchhhhh-hhHHHHHH
Confidence 566799999999999999999999998872 256899888876542222221110 00011122 122222 2
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 366 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~ 366 (516)
....+..+++.|.+||+|+++....++..+.+.+
T Consensus 99 ~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~---------------------------------------------- 132 (287)
T 1gvn_B 99 TEAIISRLSDQGYNLVIEGTGRTTDVPIQTATML---------------------------------------------- 132 (287)
T ss_dssp HHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH----------------------------------------------
Confidence 4567788899999999999999987666655443
Q ss_pred cCCCceEEEEEEecCHHHH----HHHHHHhhhhc---CcccchhhhHhHHHHHHHhHHHh--hccCceEEEEecC
Q 010176 367 SRKPYRIELVGVVCDAYLA----VVRGIRRAIMM---KRAVRVNSQLKSHKRFANAFRNY--CELVDNARLYCTN 432 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~ela----v~R~~~R~~~g---Gr~Vp~~~ql~s~~rf~~~~~~y--~~lvD~~~lydnn 432 (516)
+..||.+.++++.+|++++ +.|...|+..+ ||.+|.+.+...++++..++... ...+|.+.+||+.
T Consensus 133 ~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~ 207 (287)
T 1gvn_B 133 QAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE 207 (287)
T ss_dssp HTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTT
T ss_pred HhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 3347788888899999999 88888888764 58999888888999999888654 6789999999965
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.57 E-value=4.6e-14 Score=128.68 Aligned_cols=142 Identities=16% Similarity=0.103 Sum_probs=99.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHH-hccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~-~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
+|.+|+|.|+|||||||+++.|++ .+ +..+|+. |.++..+.+........+..+. .......+..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~------d~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 66 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINR------DDYRQSIMAHEERDEYKYTKKK-EGIVTGMQFD 66 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECH------HHHHHHHTTSCCGGGCCCCHHH-HHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecH------HHHHHHhhCCCccchhhhchhh-hhHHHHHHHH
Confidence 478999999999999999999998 45 4589954 5555555542000000011111 1122334456
Q ss_pred HHHHHH---hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176 290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 366 (516)
Q Consensus 290 la~~aL---~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~ 366 (516)
.+..++ ..|.+||+|+++....+++.+..+++.
T Consensus 67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~-------------------------------------------- 102 (181)
T 1ly1_A 67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE-------------------------------------------- 102 (181)
T ss_dssp HHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHH--------------------------------------------
Confidence 788888 899999999999988777766655432
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHh
Q 010176 367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA 415 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~ 415 (516)
.|+.+.+|++.||+++++.|...|.. |.++.+.+.++++.|...
T Consensus 103 --~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 103 --YGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREY 146 (181)
T ss_dssp --HTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHH
T ss_pred --cCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhcc
Confidence 24556678999999999999988863 678888888888777664
No 3
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.56 E-value=5.6e-14 Score=137.87 Aligned_cols=168 Identities=22% Similarity=0.329 Sum_probs=107.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~ 286 (516)
...+|.+|+++|+|||||||+++.|++.++. +.+++++|.++...+.+..+... +.. ...+. .......
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~r~~~~~~~~i~~~~g~~-~~~~~----~~~~~~~ 97 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFRSQHPHYLELQQEYGKD-SVEYT----KDFAGKM 97 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGGGTTSTTHHHHHTTCSST-THHHH----HHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHHHHhchhHHHHHHHcCch-HHHHh----hHHHHHH
Confidence 4567999999999999999999999998842 56899999997643322223221 111 11111 1112233
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 366 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~ 366 (516)
+...+..++..|.+||+|+++.....+..+..++
T Consensus 98 ~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l---------------------------------------------- 131 (253)
T 2p5t_B 98 VESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLL---------------------------------------------- 131 (253)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHH----------------------------------------------
Confidence 3557777888999999999999877666655443
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhhh-------cCcccchhhhHhHHHHHHHhHH--HhhccCceEEEEec
Q 010176 367 SRKPYRIELVGVVCDAYLAVVRGIRRAIM-------MKRAVRVNSQLKSHKRFANAFR--NYCELVDNARLYCT 431 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~elav~R~~~R~~~-------gGr~Vp~~~ql~s~~rf~~~~~--~y~~lvD~~~lydn 431 (516)
+..|+.|.++++.+|++++..|...|... .|+.+|.......+..+.-+.. .-...+|.+..|..
T Consensus 132 ~~~g~~v~lv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~t~~~~~~~~~~~I~~~l~ 205 (253)
T 2p5t_B 132 KNKGYEVQLALIATKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQR 205 (253)
T ss_dssp HHTTCEEEEEEECCCHHHHHHHHHHHHHHTTTSCSCC-------CCCTTHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhHHHHHHHHhhccCCCeEEEEeC
Confidence 23467788899999999999999999753 3455554433333344443332 23466788877763
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.48 E-value=8.2e-13 Score=131.40 Aligned_cols=144 Identities=16% Similarity=0.101 Sum_probs=100.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|.+|++.|+|||||||+++.|++.+. +..+|+.| .+++.+.+........+.... .......+...
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~------~~~~i~~D------~~r~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~ 67 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNP------GFYNINRD------DYRQSIMAHEERDEYKYTKKK-EGIVTGMQFDT 67 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHST------TEEEECHH------HHHHHHTTSCCCC---CCHHH-HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCC------CcEEeccc------HHHHHhccCCcccccccchhh-hhHHHHHHHHH
Confidence 478999999999999999999998641 45899554 445555442110000111111 11112233457
Q ss_pred HHHHH---hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176 291 LVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 291 a~~aL---~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~ 367 (516)
+..++ ..|.+||+|+++..+.+++.+.+++..
T Consensus 68 ~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~--------------------------------------------- 102 (301)
T 1ltq_A 68 AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE--------------------------------------------- 102 (301)
T ss_dssp HHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHH---------------------------------------------
Confidence 77888 899999999999988887776655432
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhH
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAF 416 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~ 416 (516)
.|+.+.+|++.+|++++++|...|. +|.+|.+.+.+++++|....
T Consensus 103 -~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~ 147 (301)
T 1ltq_A 103 -YGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL 147 (301)
T ss_dssp -TTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred -cCCcEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhccc
Confidence 2456778999999999999999986 48899888888888876543
No 5
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.44 E-value=2.2e-12 Score=119.19 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=83.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-CCCChhhHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
.+|.+|++.|+|||||||+++.|++.++ ..+++.|.++ ..+.+. +.. +..+.... ....+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-------~~~i~~D~~~------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 67 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-------LPLLSKDAFK------EVMFDGLGWS-DREWSRRV-GATAIMMLY 67 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-------CCEEEHHHHH------HHHHHHHCCC-SHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-------CeEecHHHHH------HHHHHhcCcc-chHHHHHh-hHHHHHHHH
Confidence 4689999999999999999999999884 4789766654 333221 111 11122122 333455555
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+..+++.|.+||+|+++........+.+++. .
T Consensus 68 ~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~----------------------------------------------~ 101 (193)
T 2rhm_A 68 HTAATILQSGQSLIMESNFRVDLDTERMQNLHT----------------------------------------------I 101 (193)
T ss_dssp HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHH----------------------------------------------H
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH----------------------------------------------h
Confidence 677888999999999999832111122211211 1
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCc
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR 398 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr 398 (516)
.++...+|++++|++++.+|...|...+.|
T Consensus 102 ~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r 131 (193)
T 2rhm_A 102 APFTPIQIRCVASGDVLVERILSRIAQGAR 131 (193)
T ss_dssp SCCEEEEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred cCCeEEEEEEeCCHHHHHHHHHHhcCcccc
Confidence 234466789999999999999999765444
No 6
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.41 E-value=1.5e-12 Score=137.30 Aligned_cols=123 Identities=23% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..+|.+|+|+|+|||||||+++.|++.++ +.+|+.|.++. +.. +.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~~------------------------~~~----~~ 299 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG-------YVHVNRDTLGS------------------------WQR----CV 299 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT-------CEECCGGGSCS------------------------HHH----HH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC-------cEEEccchHHH------------------------HHH----HH
Confidence 45689999999999999999999999884 58998888731 111 22
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+..++..|.+||+|+|+.....|..++++++..
T Consensus 300 ~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~--------------------------------------------- 334 (416)
T 3zvl_A 300 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDA--------------------------------------------- 334 (416)
T ss_dssp HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHc---------------------------------------------
Confidence 36677888999999999999999888887776442
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCc--ccchhhhHhHHHHH
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR--AVRVNSQLKSHKRF 412 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr--~Vp~~~ql~s~~rf 412 (516)
|+.+.+|++.++.+++++|...|...+++ .+|...+.+.+++|
T Consensus 335 -~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 379 (416)
T 3zvl_A 335 -GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF 379 (416)
T ss_dssp -TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC
T ss_pred -CCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc
Confidence 34577889999999999999999886555 45555544444333
No 7
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.34 E-value=3.2e-11 Score=110.35 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=80.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..++.+|++.|+|||||||+++.|+..+ +.++++.|.+.....+++...+... .+.. .......+.
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~-~~~~------~~~~~~~~~ 70 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPL-NDDD------RKPWLQALN 70 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGCCHHHHHHHHTTCCC-CHHH------HHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccccchHHHHHhhcCcCC-Cccc------cccHHHHHH
Confidence 3457899999999999999999999887 4589999998754333332233211 1110 111122234
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+..++..|.++|+|+++..+..++.+ +.
T Consensus 71 ~~~~~~~~~~~~~vi~~~~~~~~~~~~l--------------------------------------------------~~ 100 (175)
T 1knq_A 71 DAAFAMQRTNKVSLIVCSALKKHYRDLL--------------------------------------------------RE 100 (175)
T ss_dssp HHHHHHHHHCSEEEEECCCCSHHHHHHH--------------------------------------------------HT
T ss_pred HHHHHHHhcCCcEEEEeCchHHHHHHHH--------------------------------------------------Hh
Confidence 4566677789999999988765443321 11
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.+..+.+|+++||++++++|...|.
T Consensus 101 ~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 101 GNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp TCTTEEEEEEECCHHHHHHHHHTST
T ss_pred cCCCEEEEEEECCHHHHHHHHHhcc
Confidence 1223567899999999999999884
No 8
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.30 E-value=3.5e-10 Score=103.97 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=91.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch---------HHHHHHhcCCCCChhhHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELVHQ 281 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD---------~irk~L~~~~~~~~~~y~~e~v~~ 281 (516)
+|.+|++.|+|||||||+++.|++.++ ..+|+.|++-+.- ...+.+...+... ..+.++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~ 70 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG-------YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV----PVEITIS 70 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCC----CHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcC----CHHHHHH
Confidence 588999999999999999999999884 4889777653210 0001111111110 0111122
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176 282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE 361 (516)
Q Consensus 282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~ 361 (516)
.+...+... ...+..|..||+|++......++.+...+.
T Consensus 71 ~l~~~~~~~-~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~---------------------------------------- 109 (196)
T 1tev_A 71 LLKREMDQT-MAANAQKNKFLIDGFPRNQDNLQGWNKTMD---------------------------------------- 109 (196)
T ss_dssp HHHHHHHHH-HHHCTTCCEEEEESCCCSHHHHHHHHHHHT----------------------------------------
T ss_pred HHHHHHHhh-hccccCCCeEEEeCCCCCHHHHHHHHHHhc----------------------------------------
Confidence 222222222 223446889999999887654443322110
Q ss_pred hhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHH----HhhccCceEEEEecC
Q 010176 362 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFR----NYCELVDNARLYCTN 432 (516)
Q Consensus 362 ~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~----~y~~lvD~~~lydnn 432 (516)
..+..-.+|++++|+++++.|...|....+|.. ..+.+.+++..+..... .|.... .+.+.||+
T Consensus 110 ------~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~id~~ 178 (196)
T 1tev_A 110 ------GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG-KVKKIDAS 178 (196)
T ss_dssp ------TTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEETT
T ss_pred ------ccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcC-CEEEEECC
Confidence 001112358889999999999999987655543 34444444555444433 244333 35567865
No 9
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.26 E-value=5.4e-11 Score=117.13 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=86.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHh---ccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKE---SFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~---l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a 287 (516)
+|.+|+++|+|||||||+++.|++. .++ ..++++.|.++. .+.+. ... .... .....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~-----~~i~~~~D~~~~------~l~~~--~~~---~e~~----~~~~~ 62 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI-----DVIVLGSDLIRE------SFPVW--KEK---YEEF----IKKST 62 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEECTHHHHT------TSSSC--CGG---GHHH----HHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC-----EEEEECchHHHH------HHhhh--hHH---HHHH----HHHHH
Confidence 4789999999999999999999987 332 234466665543 23221 100 0011 11112
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~ 367 (516)
...+..+++. ..||+|+++..+.++..+..+++.
T Consensus 63 ~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~--------------------------------------------- 96 (260)
T 3a4m_A 63 YRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKK--------------------------------------------- 96 (260)
T ss_dssp HHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHH---------------------------------------------
Confidence 2356667777 899999999888877776665533
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHH
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF 412 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf 412 (516)
.|+...+|+++||++++..|...|. +.++.+.+.+.+.+|
T Consensus 97 -~~~~~~vi~l~~~~e~~~~R~~~R~----~~~~~~~l~~~~~~~ 136 (260)
T 3a4m_A 97 -YNKNYAIIYLKASLDVLIRRNIERG----EKIPNEVIKKMYEKF 136 (260)
T ss_dssp -TTCEEEEEEEECCHHHHHHHHHHTT----CSSCHHHHHHHHHHC
T ss_pred -cCCCEEEEEEeCCHHHHHHHHHhCC----CCCCHHHHHHHHHHh
Confidence 2344667899999999999998874 666665555554443
No 10
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.26 E-value=4.7e-11 Score=112.10 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=78.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
++|.+|+|.|+|||||||+++.|++.++ ..+|+.|.+.........-.+.. ..+. . ..... .
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~~~~~~~~~~~~~g~~-~~~~-----~-~~~~~----~ 77 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-------YPFIEGDALHPPENIRKMSEGIP-LTDD-----D-RWPWL----A 77 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-------CCEEEGGGGCCHHHHHHHHHTCC-CCHH-----H-HHHHH----H
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CEEEeCCcCcchhhHHHHhcCCC-CCch-----h-hHHHH----H
Confidence 3477999999999999999999999984 58999999864322211111211 1111 0 11111 2
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCC
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 369 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~ 369 (516)
.+...+..|.+||+|+++..+..++.+..++
T Consensus 78 ~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~------------------------------------------------- 108 (202)
T 3t61_A 78 AIGERLASREPVVVSCSALKRSYRDKLRESA------------------------------------------------- 108 (202)
T ss_dssp HHHHHHTSSSCCEEECCCCSHHHHHHHHHTS-------------------------------------------------
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHHhc-------------------------------------------------
Confidence 4445558899999999998876665442110
Q ss_pred CceEEEEEEecCHHHHHHHHHHhh
Q 010176 370 PYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 370 gy~I~li~V~~d~elav~R~~~R~ 393 (516)
+..+.+|+++||++++++|...|.
T Consensus 109 ~~~~~vi~l~~~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 109 PGGLAFVFLHGSESVLAERMHHRT 132 (202)
T ss_dssp TTCCEEEEEECCHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCHHHHHHHHHHhh
Confidence 122456899999999999999986
No 11
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.25 E-value=5.4e-10 Score=104.55 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=94.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch---------HHHHHHhcCCCCChhhHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAEL 278 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD---------~irk~L~~~~~~~~~~y~~e~ 278 (516)
.+.+|.+|++.|+|||||||+++.|++.++ ..+|+.|.+-+.- ...+.+...+.. .+ .+.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-------~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~ 79 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYS-------FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQI-VP---QEI 79 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSS-------CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCC-CC---HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCc-CC---HHH
Confidence 456788999999999999999999999884 5899776542210 000111111100 00 011
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhh
Q 010176 279 VHQSSTDAASSLLVTALNEG-RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDY 357 (516)
Q Consensus 279 v~~~~~~~a~~la~~aL~~G-~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~ 357 (516)
....+...+...+..| ..+|+|+.....+....+...
T Consensus 80 ----~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~-------------------------------------- 117 (203)
T 1ukz_A 80 ----TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD-------------------------------------- 117 (203)
T ss_dssp ----HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHH--------------------------------------
T ss_pred ----HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHh--------------------------------------
Confidence 1223334556677777 579999876554332211000
Q ss_pred hhhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHHh---HHHhhccCceEEEEecC
Q 010176 358 QQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFANA---FRNYCELVDNARLYCTN 432 (516)
Q Consensus 358 ~~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~~---~~~y~~lvD~~~lydnn 432 (516)
... + . .+|++++|+++++.|+..|....|+. .+.+.+.+++..+.+. +..+....|.+++.|||
T Consensus 118 --------~~~-~-~-~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~ 185 (203)
T 1ukz_A 118 --------IVE-S-K-FILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD 185 (203)
T ss_dssp --------TCC-C-S-EEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS
T ss_pred --------cCC-C-C-EEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC
Confidence 011 1 1 35889999999999999997665664 2344555555554432 22223457888778866
No 12
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.25 E-value=7e-11 Score=107.97 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=76.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC-C---CC----C-hhhHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G---HH----D-DMLQTAELVHQ 281 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~-~---~~----~-~~~y~~e~v~~ 281 (516)
+|.+|+++|+|||||||+++.|++.++. +.+.++.|.++ ..+.+. . .. . ...+..+. ..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~-----~~~~~~~D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 69 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLI------EAMPLKMQSAEGGIEFDADGGVSIGPE-FR 69 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHH------HHSCGGGGTSTTSEEECTTSCEEECHH-HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEeccchHh------hhcchhhccchhhccccCCCccccchh-HH
Confidence 4789999999999999999999999853 45667555543 222221 0 00 0 00000111 22
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCC-hHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhh
Q 010176 282 SSTDAASSLLVTALNEGRDVIMDGTLSW-VPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK 360 (516)
Q Consensus 282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~-~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~ 360 (516)
..+..+...+...++.|.+||+|+++.. +..++.+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~---------------------------------------- 109 (178)
T 1qhx_A 70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV---------------------------------------- 109 (178)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh----------------------------------------
Confidence 3344344466777889999999999863 33333332221
Q ss_pred hhhccccCCCceEEEEEEecCHHHHHHHHHHhh
Q 010176 361 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 361 ~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.++.+.++++.||++++.+|...|.
T Consensus 110 --------~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 110 --------GDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp --------TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred --------cCCcEEEEEEECCHHHHHHHHHhhC
Confidence 1123556788999999999998873
No 13
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.25 E-value=3.7e-10 Score=103.61 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=88.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH--------HHHHHhcCCCCChhhHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV--------IYRALSSKGHHDDMLQTAELVH 280 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~--------irk~L~~~~~~~~~~y~~e~v~ 280 (516)
..+|.+|++.|+|||||||+++.|++.++ ..+++.|++-+..+ ..+.+++.+.... .+.++
T Consensus 3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~ 71 (194)
T 1qf9_A 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP----SIVTV 71 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC----HHHHH
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC----HHHHH
Confidence 34688999999999999999999999884 48897766532110 0011111110000 01111
Q ss_pred HHHHHHHHHHHHHHHh--CCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhh
Q 010176 281 QSSTDAASSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ 358 (516)
Q Consensus 281 ~~~~~~a~~la~~aL~--~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~ 358 (516)
. .+...+. .|..||+|+.......+..+...+..
T Consensus 72 ~--------~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~------------------------------------ 107 (194)
T 1qf9_A 72 K--------LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKD------------------------------------ 107 (194)
T ss_dssp H--------HHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTT------------------------------------
T ss_pred H--------HHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhc------------------------------------
Confidence 1 2222222 67899999877665444333222100
Q ss_pred hhhhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHH---hHHHhhccCceEEEEecC
Q 010176 359 QKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFAN---AFRNYCELVDNARLYCTN 432 (516)
Q Consensus 359 ~~~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~---~~~~y~~lvD~~~lydnn 432 (516)
.....+ +|+++||+++++.|+..|....++.- ..+...++.+.+.. .+..+....|.+.+.||+
T Consensus 108 ---------~~~~~~-vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~ 175 (194)
T 1qf9_A 108 ---------FVDTKF-VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPAN 175 (194)
T ss_dssp ---------TCEEEE-EEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECS
T ss_pred ---------cCCCCE-EEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECC
Confidence 001122 68889999999999999975444422 23333333333332 222233446887888865
No 14
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.24 E-value=1.8e-11 Score=112.21 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
+|.+|++.|+|||||||+++.|++.++. .++ ++|.+. +.+++ ++..+. ....+.... .+... .
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~d~~~~g--~~i~~-~~~~g~-~~~~~~~~~-~~~~~----~ 67 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG-------SFVFEPEEMG--QALRK-LTPGFS-GDPQEHPMW-IPLML----D 67 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT-------CEECCTHHHH--HHHHH-TSTTCC-SCGGGSTTH-HHHHH----H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC-------CEEEchhhhH--HHHHH-hCcccc-chhhhhHHH-HHHHH----H
Confidence 5789999999999999999999998853 344 544322 22322 222111 111111111 11122 2
Q ss_pred HHHHHHhC-CCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 290 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 290 la~~aL~~-G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
.+...++. |..||+|+++..+.+++.+...++.
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~---------------------------------------------- 101 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKD---------------------------------------------- 101 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh----------------------------------------------
Confidence 34445555 8899999999987766555444321
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
.|+.+.+|+++||++++++|...|.
T Consensus 102 ~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 102 RGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp TTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred cCCceEEEEEeCCHHHHHHHHHhcc
Confidence 1233455899999999999999885
No 15
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.24 E-value=3e-10 Score=123.22 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhH-----HHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ-----TAELVHQSS 283 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y-----~~e~v~~~~ 283 (516)
..+|.+|+|+|+|||||||+++.|++.++|. ..++.+| +.|.+++.+.+.... ...+ ......+..
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~------s~D~~r~~~~~~~~~-~~~f~~~~~~~~~~re~~ 102 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVF------NVGEYRREAVKQYSS-YNFFRPDNEEAMKVRKQC 102 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE------EHHHHHHHHHSCCCC-GGGGCTTCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEe------cccHHHHHhccCCcc-ccccCcccHHHHHHHHHH
Confidence 3578999999999999999999999988652 2245677 445555556553110 0111 111111222
Q ss_pred HHHHHHHHHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176 284 TDAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE 361 (516)
Q Consensus 284 ~~~a~~la~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~ 361 (516)
...+...+...| ..|.+||+|+|+.....|+.+.+++++
T Consensus 103 ~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~--------------------------------------- 143 (520)
T 2axn_A 103 ALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKE--------------------------------------- 143 (520)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHH---------------------------------------
Confidence 222233445555 679999999999999999988776643
Q ss_pred hhccccCCCceEEEEEEecC-HHHHHHHHHHhhhh
Q 010176 362 NRQVFSRKPYRIELVGVVCD-AYLAVVRGIRRAIM 395 (516)
Q Consensus 362 ~~~~~~~~gy~I~li~V~~d-~elav~R~~~R~~~ 395 (516)
.|+.+.++.+.|+ +++..+|+.+|...
T Consensus 144 -------~g~~v~~l~~~~~d~e~i~~ri~~r~~~ 171 (520)
T 2axn_A 144 -------NDFKAFFIESVCDDPTVVASNIMEVKIS 171 (520)
T ss_dssp -------HTCEEEEEEEECCCHHHHHHHHHHHTTT
T ss_pred -------cCCeEEEEEEeCChHHHHHHHHHhhhhc
Confidence 1455667778876 78777888777643
No 16
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.24 E-value=1.6e-10 Score=108.71 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=81.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..++.+|+|.|+|||||||+++.|+..+ +.++++.|.+......++...+... .+. . ....+..+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~-~~~----~--~~~~~~~~~ 91 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPL-TDE----D--RWPWLRSLA 91 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCC-CHH----H--HHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCC-CCc----c--cccHHHHHH
Confidence 3467899999999999999999999888 4589999998754434443333211 111 0 111223344
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
..+...+..|.++|+|+++..+..++.+. + ..
T Consensus 92 ~~~~~~~~~g~~viid~~~~~~~~~~~l~----~--------------------------------------------~~ 123 (200)
T 4eun_A 92 EWMDARADAGVSTIITCSALKRTYRDVLR----E--------------------------------------------GP 123 (200)
T ss_dssp HHHHHHHHTTCCEEEEECCCCHHHHHHHT----T--------------------------------------------SS
T ss_pred HHHHHHHhcCCCEEEEchhhhHHHHHHHH----H--------------------------------------------hC
Confidence 56667778899999999988765554321 0 00
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhh
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRA 393 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~ 393 (516)
. .+.+|++.||+++.++|...|.
T Consensus 124 ~--~~~vv~l~~~~e~l~~Rl~~R~ 146 (200)
T 4eun_A 124 P--SVDFLHLDGPAEVIKGRMSKRE 146 (200)
T ss_dssp S--CCEEEEEECCHHHHHHHHTTCS
T ss_pred C--ceEEEEEeCCHHHHHHHHHhcc
Confidence 1 2456899999999999998775
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.22 E-value=2.2e-10 Score=105.92 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=89.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch-----HH---HHHHhcCCCCChhhHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VI---YRALSSKGHHDDMLQTAELVHQ 281 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD-----~i---rk~L~~~~~~~~~~y~~e~v~~ 281 (516)
.+|.+|++.|+|||||||+++.|++.++ ..+++.|.+-+.- .. .+.+...+... ..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~--- 72 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-------YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLV----PLET--- 72 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH---
Confidence 4678999999999999999999999884 4789777643220 00 01111111100 0111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhh
Q 010176 282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKE 361 (516)
Q Consensus 282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~ 361 (516)
....+...+...+..|..||+|+......+++.+...
T Consensus 73 -~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~------------------------------------------ 109 (196)
T 2c95_A 73 -VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERR------------------------------------------ 109 (196)
T ss_dssp -HHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHH------------------------------------------
T ss_pred -HHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHh------------------------------------------
Confidence 2223344556667788999999865544332221110
Q ss_pred hhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCccc-chhhhHhHHHHHHHhHHH---hhccCceEEEEecC
Q 010176 362 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANAFRN---YCELVDNARLYCTN 432 (516)
Q Consensus 362 ~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~V-p~~~ql~s~~rf~~~~~~---y~~lvD~~~lydnn 432 (516)
...+ -.+|+++||++++.+|...|....+|.- ..+.+.++.+.+...... +....|.+.+.||+
T Consensus 110 -----~~~~--~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~ 177 (196)
T 2c95_A 110 -----IGQP--TLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAE 177 (196)
T ss_dssp -----TCCC--SEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECC
T ss_pred -----cCCC--CEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence 0011 1358899999999999999875445532 233333333333322221 12235777777855
No 18
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.21 E-value=3e-10 Score=101.79 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=84.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC-ChhhHHHHHHHHH-HHHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQS-STDAASSL 290 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~-~~~~y~~e~v~~~-~~~~a~~l 290 (516)
.+|++.|+|||||||+++.| +.++ ..+++.|++ +++.+...+.. ...........+. -.......
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g-------~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG-------AKVIVMSDV-----VRKRYSIEAKPGERLMDFAKRLREIYGDGVVARL 68 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT-------CEEEEHHHH-----HHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC-------CcEEEHhHH-----HHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence 47899999999999999999 7774 477855432 23322221100 0111111110111 11223456
Q ss_pred HHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 291 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 291 a~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
+...+ ..+..||+|+. ..+..++.+.... .
T Consensus 69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~----------------------------------------------~- 100 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRLL----------------------------------------------G- 100 (179)
T ss_dssp HHHHHCSCCCSCEEEECC-CCHHHHHHHHHHH----------------------------------------------C-
T ss_pred HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHHh----------------------------------------------C-
Confidence 66677 77889999997 6665554432221 0
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHH-HHHhHHHhhccCceEEEEecC
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR-FANAFRNYCELVDNARLYCTN 432 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~r-f~~~~~~y~~lvD~~~lydnn 432 (516)
....+|++++|++++++|...|..... ....+...+++.+ .......|...+|. +.||+
T Consensus 101 --~~~~~i~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~ad~--vId~~ 160 (179)
T 3lw7_A 101 --DSVYIVAVHSPPKIRYKRMIERLRSDD-SKEISELIRRDREELKLGIGEVIAMADY--IITND 160 (179)
T ss_dssp --SCEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHHTCSE--EEECC
T ss_pred --CCcEEEEEECCHHHHHHHHHhccCCCC-cchHHHHHHHHHhhhccChHhHHHhCCE--EEECC
Confidence 124568999999999999998853211 1223333333322 12224556777775 44654
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.18 E-value=5.7e-10 Score=102.63 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch-----HH---HHHHhcCCCCChhhHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VI---YRALSSKGHHDDMLQTAELVHQS 282 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD-----~i---rk~L~~~~~~~~~~y~~e~v~~~ 282 (516)
++.+|++.|+|||||||+++.|++.++ ..++++|++-+.. +. .+.++..+... ..+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~---- 67 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG-------FKKLSTGDILRDHVARGTPLGERVRPIMERGDLV----PDDL---- 67 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT-------CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH----
Confidence 577899999999999999999999884 4889766442210 00 01111111000 0001
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhh
Q 010176 283 STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKEN 362 (516)
Q Consensus 283 ~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~ 362 (516)
....+...+..| +|+|++......+..+..++..
T Consensus 68 ----~~~~~~~~l~~~--~i~dg~~~~~~~~~~l~~~l~~---------------------------------------- 101 (186)
T 3cm0_A 68 ----ILELIREELAER--VIFDGFPRTLAQAEALDRLLSE---------------------------------------- 101 (186)
T ss_dssp ----HHHHHHHHCCSE--EEEESCCCSHHHHHHHHHHHHH----------------------------------------
T ss_pred ----HHHHHHHHhcCC--EEEeCCCCCHHHHHHHHHHHHh----------------------------------------
Confidence 112344445554 9999887765444332222111
Q ss_pred hccccCCCceE-EEEEEecCHHHHHHHHHHhhhhcCcc-cchhhhHhHHHHHHH---hHHHhhccCceEEEEecC
Q 010176 363 RQVFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFAN---AFRNYCELVDNARLYCTN 432 (516)
Q Consensus 363 ~~~~~~~gy~I-~li~V~~d~elav~R~~~R~~~gGr~-Vp~~~ql~s~~rf~~---~~~~y~~lvD~~~lydnn 432 (516)
.|+.. .+++++||++++++|+..|....||. .+.+...++...+.. ++..+....+.+.+.||+
T Consensus 102 ------~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~ 170 (186)
T 3cm0_A 102 ------TGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGL 170 (186)
T ss_dssp ------TTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred ------cCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECC
Confidence 12222 45888999999999999997544443 333333333333322 222222335667778854
No 20
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.17 E-value=2.3e-10 Score=106.01 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchH--------HHHHHhcCCCCChhhHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV--------IYRALSSKGHHDDMLQTAELVHQ 281 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~--------irk~L~~~~~~~~~~y~~e~v~~ 281 (516)
.+|.+|++.|+|||||||+++.|++.++ ..+++.|++-+... ..+.++..+.... .+.++
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~- 77 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTGELLREELASESERSKLIRDIMERGDLVP----SGIVL- 77 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC----HHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC----HHHHH-
Confidence 4578999999999999999999999984 48998776532211 0011111111100 11112
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCCCChHH
Q 010176 282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPF 312 (516)
Q Consensus 282 ~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~ 312 (516)
..+...+...+..|..||+|+.......
T Consensus 78 ---~~~~~~i~~~~~~~~~vi~dg~~~~~~~ 105 (199)
T 2bwj_A 78 ---ELLKEAMVASLGDTRGFLIDGYPREVKQ 105 (199)
T ss_dssp ---HHHHHHHHHHTTSCSCEEEETCCSSHHH
T ss_pred ---HHHHHHHhcccccCccEEEeCCCCCHHH
Confidence 2223345555667899999988776543
No 21
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.05 E-value=2.4e-09 Score=100.22 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=32.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...+|.+|++.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~~d~~ 54 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-------IPQISTGEL 54 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhHH
Confidence 356788999999999999999999999884 368876554
No 22
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.98 E-value=6.4e-09 Score=96.18 Aligned_cols=124 Identities=11% Similarity=0.022 Sum_probs=77.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a 287 (516)
...++.+|++.|+|||||||+++.|+..+... +....+++.|.++ ..+.+. ..... .. ....+..+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~--~~~~~~~~~d~~~------~~~~~~-~~~~~----~~-r~~~~~~~ 74 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE--GYRVEVLDGDWAR------TTVSEG-AGFTR----EE-RLRHLKRI 74 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------TTTTTT-CCCCH----HH-HHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEeeHHHHH------HHHhhc-cCCCh----hh-HHHHHHHH
Confidence 34568999999999999999999999887421 1235678666553 334331 00011 11 11122223
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhcccc
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~ 367 (516)
...+...+..|..||+|+++.....++.+..++..
T Consensus 75 ~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~--------------------------------------------- 109 (186)
T 2yvu_A 75 AWIARLLARNGVIVICSFVSPYKQARNMVRRIVEE--------------------------------------------- 109 (186)
T ss_dssp HHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhc---------------------------------------------
Confidence 33455557889999999988776666555443321
Q ss_pred CCCceEEEEEEecCHHHHHHHHHH
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIR 391 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~ 391 (516)
.|....+|+++||++++..|...
T Consensus 110 -~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 110 -EGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp -TTCCEEEEEEECCHHHHHHHCHH
T ss_pred -cCCCeEEEEEeCCHHHHHHhhhh
Confidence 12234568999999999998644
No 23
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.96 E-value=2.4e-08 Score=94.13 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=27.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|+|.|+|||||||+++.|++.++ ..++++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-------IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEeeHHHH
Confidence 478899999999999999999884 478866544
No 24
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.95 E-value=2.2e-08 Score=90.16 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+|++.|+|||||||+++.|++.++ ..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-------YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-------CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-------CeeecCcccc
Confidence 3789999999999999999999984 4789888764
No 25
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.94 E-value=3.4e-08 Score=90.66 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc---hHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s---D~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~l 290 (516)
+|++.|+|||||||+++.|++.+.. .+..++++|+.... +.++ .+...+.. .+....-......+..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~----~g~~~i~~d~~~~~~~~~~i~-~~~~~g~~-~~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ----KGYFVSLYREPGGTKVGEVLR-EILLTEEL-DERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEESSCSSHHHHHHH-HHHHHSCC-CHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCCCCCchHHHHH-HHHcCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999997721 13467877764322 1222 22221111 11100001011222334456
Q ss_pred HHHHHhCCCcEEEeCC
Q 010176 291 LVTALNEGRDVIMDGT 306 (516)
Q Consensus 291 a~~aL~~G~sVIvDaT 306 (516)
+..++.+|..||+|..
T Consensus 76 i~~~l~~~~~vi~dr~ 91 (195)
T 2pbr_A 76 IIPDLKRDKVVILDRF 91 (195)
T ss_dssp HHHHHHTTCEEEEESC
T ss_pred HHHHHhCCCEEEECcc
Confidence 6778899999999954
No 26
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.92 E-value=2.2e-08 Score=94.52 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=27.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|+|.|+|||||||+++.|++.++ ..+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-------IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 478899999999999999999884 478977554
No 27
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.92 E-value=2.5e-08 Score=91.92 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=104.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
-+++.++.+.|+|||||||+++.+.. +..++ +.|.++..+++.. .... . ....++.+.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~------~~d~~~g~~~~~~--~~~~-~----~~~~~~~~~ 63 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVI------SSDFCRGLMSDDE--NDQT-V----TGAAFDVLH 63 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSC---------GGGEE------EHHHHHHHHCSST--TCGG-G----HHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEE------ccHHHHHHhcCcc--cchh-h----HHHHHHHHH
Confidence 35688999999999999999998642 33567 5555555555431 1111 1 112233334
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
......+..|..+++|.++.....+.+.+.+|+...
T Consensus 64 ~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-------------------------------------------- 99 (171)
T 4gp7_A 64 YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-------------------------------------------- 99 (171)
T ss_dssp HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence 466777889999999999999888888888887641
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHhHHHHHHHhHHHhhccCceEEEEecC
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 432 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~s~~rf~~~~~~y~~lvD~~~lydnn 432 (516)
....++.++.|..-.-.|...|. .+.||.+.+.++...+.+.+...... ....++-+.
T Consensus 100 --~~p~~lllDEPt~~Ld~~~~~R~---~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 100 --CFPVAVVFNLPEKVCQERNKNRT---DRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp --CEEEEEEECCCHHHHHHHHHTCS---SCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred --CcEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence 23567788888877777777776 46999988888888887776555433 344454443
No 28
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.90 E-value=2e-08 Score=95.42 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+|.+|++.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH-------AAHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEehhHH
Confidence 3467899999999999999999999984 488976544
No 29
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.87 E-value=8.1e-09 Score=97.04 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceE--EEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV--VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av--~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~ 286 (516)
..++.+|++.|+|||||||+++.|+..+.. .+.+ ++|.|.++.. +... . .+..+. ....+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~~------~~~~-~----~~~~~~-~~~~~~~ 85 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNVRHG------LNRD-L----SFKAED-RAENIRR 85 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTTT------TTTT-C----CSSHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchhhhH------hhcc-c----CcChHH-HHHHHHH
Confidence 356899999999999999999999988742 1334 8977766532 2221 0 011111 1222233
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHH
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQT 316 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~ 316 (516)
....+......|.++|+..+...+..|+.+
T Consensus 86 ~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~ 115 (200)
T 3uie_A 86 VGEVAKLFADAGIICIASLISPYRTDRDAC 115 (200)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEecCCchHHHHHHH
Confidence 344666677889999998888877776654
No 30
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.87 E-value=7.5e-08 Score=88.41 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+..|++.|+|||||||+++.|++.++ ..++|.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-------~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-------RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHH
Confidence 56788999999999999999999984 488966655
No 31
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.86 E-value=7.5e-08 Score=93.79 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...+|.+|++.|+|||||||+++.|++.+ +..+|++|++
T Consensus 25 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~~-------g~~~is~~~~ 63 (243)
T 3tlx_A 25 LSKPDGRYIFLGAPGSGKGTQSLNLKKSH-------CYCHLSTGDL 63 (243)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHH-------CCEEEEHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHh-------CCeEEecHHH
Confidence 34578999999999999999999999988 4588966543
No 32
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.86 E-value=1.4e-08 Score=96.21 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=58.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..++.+|++.|+|||||||+++.|++.++.. .+...++++.|.++. .+... . .+.... ....+..+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~~r~------~l~~~-~----~~~~~~-r~~~~~~~~ 88 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIRF------GLNKD-L----GFSEAD-RNENIRRIA 88 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHTT------TTTTT-C----CSSHHH-HHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc-cCCcEEEECChHHhh------hhccc-c----CCCHHH-HHHHHHHHH
Confidence 4568899999999999999999999877410 011268886655542 23221 0 011111 122233334
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
..+..+++.|..||+|.+......++.+..+
T Consensus 89 ~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l 119 (211)
T 1m7g_A 89 EVAKLFADSNSIAITSFISPYRKDRDTARQL 119 (211)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEecCCccHHHHHHHHHH
Confidence 4567788999999999443223444444433
No 33
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.85 E-value=3.4e-08 Score=105.30 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=63.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCC----ChhhHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSST 284 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~----~~~~y~~e~v~~~~~ 284 (516)
..+|.+|+|.|+|||||||+++.|++.+++. ..+...+ ..|.+++.+.+.... ...........+...
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~------~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~ 107 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREF------NVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCA 107 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE------EHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEE------ecchhhhhhccCCCcccccCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999987651 1234555 344455555432000 000011111122221
Q ss_pred HHHHHHHHHHH--hCCCcEEEeCCCCChHHHHHHHHHHHh
Q 010176 285 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (516)
Q Consensus 285 ~~a~~la~~aL--~~G~sVIvDaTfs~~~~r~~~~~lAr~ 322 (516)
..+...+...+ ..|..||+|+|+...+.|+.+.+.+++
T Consensus 108 ~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 108 LAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 22222345556 568899999999999998888766543
No 34
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.84 E-value=3e-08 Score=98.92 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.+|.+|+|+|+|||||||+++.|+ .+ +..+|++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~l-------g~~~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NL-------GAYIIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HH-------TCEEEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HC-------CCcEEehhHH
Confidence 4568999999999999999999999 56 4588988876
No 35
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.83 E-value=8.3e-08 Score=91.95 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=28.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|++.|+|||||||+++.|++.++ ..+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-------~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-------LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEchHHH
Confidence 689999999999999999999884 488866554
No 36
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=2e-07 Score=87.36 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.++.+|++.|+|||||||+++.|++.++ ..+++.|.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-------~~~i~~d~~ 59 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-------VPFIDLDWY 59 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcchHH
Confidence 4466899999999999999999999984 478966654
No 37
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.81 E-value=1.1e-07 Score=92.28 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=82.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHH------HH-
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAEL------VH- 280 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~------v~- 280 (516)
..++|++|++.|||||||||.++.|++.++ ..+|++. |.+|..+... ++-.....+. +.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-------~~hIstG-----dllR~~i~~~--t~lg~~~~~~~~~G~lVpd 90 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-------FNHLSSG-----DLLRAEVQSG--SPKGKELKAMMERGELVPL 90 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC-------CEEECHH-----HHHHHHHTTC--CHHHHHHHHHHHHTCCCCH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEcHH-----HHHHHHHHcC--CchHHHHHHHHhcCCCCCH
Confidence 446789999999999999999999999994 4889442 3344444331 1000000000 00
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhh
Q 010176 281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK 360 (516)
Q Consensus 281 ~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~ 360 (516)
+.+...+...+.........+|+|+-=.+..+.+. +...
T Consensus 91 e~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~---l~~~-------------------------------------- 129 (217)
T 3umf_A 91 EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIK---FEKE-------------------------------------- 129 (217)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHH---HHHH--------------------------------------
T ss_pred HHHHHHHHHHHhhccccccCcccccCCCcHHHHHH---HHHh--------------------------------------
Confidence 01112222233333344556888875444322221 1100
Q ss_pred hhhccccCCCceEEEEEEecCHHHHHHHHHHhhhhcCcccc-hhhhHhHHHHHHH---hHHHhhccCceEEEEe
Q 010176 361 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFAN---AFRNYCELVDNARLYC 430 (516)
Q Consensus 361 ~~~~~~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr~Vp-~~~ql~s~~rf~~---~~~~y~~lvD~~~lyd 430 (516)
...+ -.++++.||.++.+.|...|....+|.-. ++.+.++++.|.+ ++..|-.--..+...|
T Consensus 130 ------~~~~--~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Id 195 (217)
T 3umf_A 130 ------VCPC--LCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITID 195 (217)
T ss_dssp ------TCCC--SEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEE
T ss_pred ------CCcc--CEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0111 12478899999999999999887777544 5555555544443 3333333334444555
No 38
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.81 E-value=2.9e-09 Score=100.39 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.9
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+-..++.+|++.|+|||||||+++.|++.+
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345678899999999999999999999876
No 39
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=8.6e-08 Score=88.61 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=76.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 291 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la 291 (516)
+.++++.|+|||||||+++.|+.... +.++++.|.+.+. .. .+....... .......++.+...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~------g~~~i~~d~~~~~------~~-~~~~~~~~~--~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD------NSAYIEGDIINHM------VV-GGYRPPWES--DELLALTWKNITDLT 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS------SEEEEEHHHHHTT------CC-TTCCCGGGC--HHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC------CeEEEcccchhhh------hc-cccccCccc--hhHHHHHHHHHHHHH
Confidence 46889999999999999999987552 4588977766432 11 111111110 000112233333455
Q ss_pred HHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCCc
Q 010176 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 371 (516)
Q Consensus 292 ~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~gy 371 (516)
...+..|.++|+|+++ .+..++.+.++++. +..+.
T Consensus 67 ~~~~~~~~~~ild~~~-~~~~~~~~~~~~~s--------------------------------------------~g~~~ 101 (189)
T 2bdt_A 67 VNFLLAQNDVVLDYIA-FPDEAEALAQTVQA--------------------------------------------KVDDV 101 (189)
T ss_dssp HHHHHTTCEEEEESCC-CHHHHHHHHHHHHH--------------------------------------------HCSSE
T ss_pred HHHHhcCCcEEEeecc-CHHHHHHHHHHHHh--------------------------------------------cccCC
Confidence 5666788999999965 34333333222110 11233
Q ss_pred eEEEEEEecCHHHHHHHHHHhhhhcCcccchhhhHh
Q 010176 372 RIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLK 407 (516)
Q Consensus 372 ~I~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ql~ 407 (516)
++.++++.+|++..+.|...|... ..++...+..
T Consensus 102 ~~~~i~L~~~~e~l~~R~~~r~~d--~~ld~~~~~~ 135 (189)
T 2bdt_A 102 EIRFIILWTNREELLRRDALRKKD--EQMGERCLEL 135 (189)
T ss_dssp EEEEEEEECCHHHHHHHTTTSCC------CGGGGHH
T ss_pred CeEEEEEeCCHHHHHHHHHhcccc--ccCCHHHHHH
Confidence 566788899999999999888543 2344443333
No 40
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.79 E-value=1.7e-07 Score=84.84 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+|++.|+|||||||+++.|++.++ ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-------YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-------CcEEcccHH
Confidence 4689999999999999999999984 488966655
No 41
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.78 E-value=2.6e-08 Score=97.82 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=77.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH------------hcCCC----CChh---h
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL------------SSKGH----HDDM---L 273 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L------------~~~~~----~~~~---~ 273 (516)
.+|+|+|+|||||||+++.|++.+ +..+|+.|.+... +.+ .+..+ ..++ .
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-------~~~~i~~D~~~~~----~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~ 70 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-------GWPVVALDRVQCC----PQIATGSGRPLESELQSTRRIYLDSRPLTEGI 70 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-------CCCEEECCSGGGC----GGGTTTTTCCCGGGGTTCCEECSCCCCGGGCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-------CCeEEeccHHhcc----CCCccccCCCCHHHHhCCCeEEEeeecccccc
Confidence 478999999999999999999988 4588999986421 111 00000 0000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhcccc
Q 010176 274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG 353 (516)
Q Consensus 274 y~~e~v~~~~~~~a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a 353 (516)
++... ..+.+...+ +++..|.+||+++.+. .+ +.+++.. .+|
T Consensus 71 ~~~~~----f~~~~~~~i-~~~~~g~~vIl~gg~~--~~---~~~~~~~----------------------~~~------ 112 (253)
T 2ze6_A 71 LDAES----AHRRLIFEV-DWRKSEEGLILEGGSI--SL---LNCMAKS----------------------PFW------ 112 (253)
T ss_dssp CCHHH----HHHHHHHHH-HTTTTSSEEEEEECCH--HH---HHHHHHC----------------------TTT------
T ss_pred ccHHH----HHHHHHHHH-HHHhCCCCeEEeccHH--HH---HHHHHhc----------------------ccc------
Confidence 22222 112223344 6678899999986553 11 1111111 011
Q ss_pred chhhhhhhhhccccCCCceEEEEEEecCH-HHHHHHHHHhhhh--cCcccchh
Q 010176 354 EEDYQQKENRQVFSRKPYRIELVGVVCDA-YLAVVRGIRRAIM--MKRAVRVN 403 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~~gy~I~li~V~~d~-elav~R~~~R~~~--gGr~Vp~~ 403 (516)
..++.+.++++.+|. ++...|...|... .+.+++..
T Consensus 113 --------------~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~ 151 (253)
T 2ze6_A 113 --------------RSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPS 151 (253)
T ss_dssp --------------TSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCC
T ss_pred --------------cccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccch
Confidence 135677889999986 9999999999865 56666633
No 42
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.74 E-value=1.3e-07 Score=90.37 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+|.+|++.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-------LKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS-------SEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEEechHH
Confidence 4578899999999999999999999884 488977654
No 43
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.74 E-value=3e-07 Score=85.44 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=25.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
+|.+|++.|+|||||||+++.|++.++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999998854
No 44
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.72 E-value=3.2e-07 Score=87.27 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+..|++.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG-------LAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-------ceEEehhHH
Confidence 45788999999999999999999984 488966544
No 45
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.72 E-value=1.6e-07 Score=84.79 Aligned_cols=34 Identities=24% Similarity=0.107 Sum_probs=28.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|++.|+|||||||+++.|++.++ ..+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-------IPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-------CCEEECcHHH
Confidence 588999999999999999999884 4789766653
No 46
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.71 E-value=4.2e-07 Score=83.72 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|++.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 47
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.69 E-value=2.5e-07 Score=84.91 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=28.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+|+|.|+|||||||+++.|++.++ ..+|+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-------VGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-------CCEEeCchH
Confidence 4588999999999999999999984 478966655
No 48
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.67 E-value=1.3e-07 Score=104.68 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=76.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc---cccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l---~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~ 286 (516)
.+|.+|++.|+|||||||+++.|++.+ ++ .++.+|.|.++. .+... .. +..+. ....++.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-----~~v~lDgD~iR~------~L~~~-~~----fs~~d-ree~~r~ 112 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIRQ------GLNKN-LG----FSPED-REENVRR 112 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEESHHHHTT------TTTTT-CC----SSHHH-HHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEechHHhhh------ccCcc-cc----CChhh-hHHHHHH
Confidence 478999999999999999999999987 43 456776555543 23321 00 11111 2222333
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccc
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 366 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~ 366 (516)
+...+...+..|..||.+.+...+..++.+.++++
T Consensus 113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~--------------------------------------------- 147 (630)
T 1x6v_B 113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHE--------------------------------------------- 147 (630)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHH---------------------------------------------
Confidence 34466777889999998854433444554444332
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHH
Q 010176 367 SRKPYRIELVGVVCDAYLAVVRGIR 391 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~elav~R~~~ 391 (516)
..+..+.+|+++||++++.+|..+
T Consensus 148 -~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 148 -GASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp -TTTCCEEEEEEECCHHHHHHHCTT
T ss_pred -hCCCCeEEEEEECCHHHHHHHhcc
Confidence 123346679999999999999764
No 49
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.67 E-value=2e-07 Score=87.38 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.+|.+.|+|||||||+++.|++ + |..++|+|.+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l-------g~~~id~d~~~ 36 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L-------GVPLVDADVVA 36 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T-------TCCEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C-------CCcccchHHHH
Confidence 46789999999999999999986 6 45889888763
No 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.66 E-value=5.1e-07 Score=82.51 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=48.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCC-CChh---hHHHHHHHHHHHHHHH
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-HDDM---LQTAELVHQSSTDAAS 288 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~-~~~~---~y~~e~v~~~~~~~a~ 288 (516)
.+|++.|+|||||||+++.|++.++. .+....+++.|++ +++.+..... .+.. ....+. .......+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~--~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 73 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN--QGINNKIINYGDF-----MLATALKLGYAKDRDEMRKLSVEK-QKKLQIDAA 73 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT--TTCCEEEEEHHHH-----HHHHHHTTTSCSSHHHHTTSCHHH-HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEEECChH-----HHHHHHhcccccchhhhhcCCHHH-HHHHHHHHH
Confidence 47899999999999999999998841 0112577754332 2222211100 0000 011111 122222233
Q ss_pred HHHHHHH--hCCCcEEEeCC
Q 010176 289 SLLVTAL--NEGRDVIMDGT 306 (516)
Q Consensus 289 ~la~~aL--~~G~sVIvDaT 306 (516)
..+..++ ..|..||+|+.
T Consensus 74 ~~i~~~l~~~~~~~vi~d~~ 93 (194)
T 1nks_A 74 KGIAEEARAGGEGYLFIDTH 93 (194)
T ss_dssp HHHHHHHHHTCSSEEEEEEC
T ss_pred HHHHHHhhccCCCEEEECCc
Confidence 4466677 78999999987
No 51
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.66 E-value=2.9e-07 Score=87.47 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|.+|++.|+|||||||+++.|++.++ ..+++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-------LAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-------CEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 567899999999999999999999984 488876654
No 52
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.65 E-value=6.9e-08 Score=90.28 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
..+|.+|++.|+|||||||+++.|++.++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999998753
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.65 E-value=1.5e-07 Score=87.90 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..+|.+|++.|+|||||||+++.|++.++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999999874
No 54
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.63 E-value=1.8e-06 Score=82.93 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...|..|++.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 50 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFC-------VCHLATGDM 50 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 34567899999999999999999999984 488976543
No 55
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.62 E-value=1.1e-06 Score=86.05 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+|.+|.|.|||||||||+++.|++.++ ..+++.|.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-------~~~~d~g~~~ 44 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG-------ARYLDTGAMY 44 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCCcHH
Confidence 4588999999999999999999999984 4889665553
No 56
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.62 E-value=3.1e-07 Score=100.77 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=61.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..+|.+|++.|+|||||||+++.|++.++..| ...++++|.|. +++.+.+... .. .+. ....++.+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~------ir~~l~~~~~-f~----~~e-r~~~i~ri~ 459 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDT------VRHELSSELG-FT----RED-RHTNIQRIA 459 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHH------HHHHTCTTCC-CS----HHH-HHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHH------HHHHhccccC-CC----hhH-HHHHHHHHH
Confidence 34678999999999999999999999875210 01357885544 5555544210 01 111 122233344
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHH
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~l 319 (516)
..+...+++|..||.+.+...+..|+.+.++
T Consensus 460 ~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l 490 (573)
T 1m8p_A 460 FVATELTRAGAAVIAAPIAPYEESRKFARDA 490 (573)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCCcHHHHHHHHHH
Confidence 5777788899999999666566666554443
No 57
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.62 E-value=2.3e-07 Score=85.14 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.++.+|++.|+|||||||+++.|++.+.. .+...+.+|.|.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHHHH
Confidence 35788999999999999999999987621 001356676666543
No 58
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.61 E-value=6.5e-07 Score=86.70 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=26.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..++.+|++.|+|||||||+++.|++.+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999999999884
No 59
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.58 E-value=4.1e-07 Score=83.15 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=29.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|.+|++.|+|||||||+++.|++.++. .+.+..+++.|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~--~g~~~~~i~~~~ 41 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK--EGVNYKMVSFGS 41 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT--TTCCCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCcceEEEehHH
Confidence 678999999999999999999998841 000157886543
No 60
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.56 E-value=3.1e-07 Score=84.16 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..++.+|++.|+|||||||+++.|++.++ ..+++.|.+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~-------~~~~~~d~~ 45 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG-------LKYINVGDL 45 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC-------CeEEEHHHH
Confidence 34577889999999999999999999984 488866654
No 61
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.54 E-value=1.6e-06 Score=82.03 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|.+|+|.|++||||||+++.|++ + +..++|+|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-------g~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-------GINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEccHH
Confidence 578999999999999999999987 6 4589988876
No 62
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.54 E-value=1.6e-06 Score=84.46 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=35.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccC---CCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG---AATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~---~~~~av~IdaD~ir~ 255 (516)
...+|.+|.|.|+|||||||+++.|++.+++.. .+..+.+|+.|+|-+
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 345788999999999999999999999885410 011345899999864
No 63
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.54 E-value=1.1e-06 Score=80.83 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..++.++++.|+|||||||+++.|+.... .+.++++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~ 46 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLW 46 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchh
Confidence 45678999999999999999999998753 266899777653
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.50 E-value=1.9e-06 Score=78.01 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
++.+|++.|+|||||||+++.|+..++ .+++|+|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-------~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-------CCEEeccHH
Confidence 456799999999999999999999884 488976654
No 65
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.50 E-value=1.2e-06 Score=82.09 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=34.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
...++.+|.|.|+|||||||+++.|+..+. +..+++.|.+-.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST------TEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC------CcEEEeCCcccc
Confidence 345678999999999999999999998761 458899988743
No 66
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.50 E-value=1.4e-05 Score=76.96 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCC----CCChh-----hHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG----HHDDM-----LQTAELVH 280 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~----~~~~~-----~y~~e~v~ 280 (516)
++.+|++.|++||||||.++.|.+.+...+. ...++. +|..-.-...+++-+.+.. ..-++ ++.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R-- 78 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI-RDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR-- 78 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-CcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH--
Confidence 3679999999999999999999988743110 012222 1211000112344443211 11011 222222
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176 281 QSSTDAASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 281 ~~~~~~a~~la~~aL~~G~sVIvDa 305 (516)
...+...+..+|++|..||.|=
T Consensus 79 ---~~~~~~~i~paL~~g~~VI~DR 100 (213)
T 4tmk_A 79 ---VQLVETVIKPALANGTWVIGDR 100 (213)
T ss_dssp ---HHHHHHTHHHHHHTTCEEEEEC
T ss_pred ---HHHHHHHHHHHHHCCCEEEEcC
Confidence 1223456888999999999994
No 67
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.49 E-value=5e-07 Score=98.58 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=60.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
..|.+|++.|+|||||||+++.|++.++.. +..+.+++.| .+++.+.+.....+ .+ ....++.+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~--G~~~~~ld~D------~ir~~l~~~~~f~~----~e--r~~~l~~i~~ 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQAR--GRKVTLLDGD------VVRTHLSRGLGFSK----ED--RITNILRVGF 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECHH------HHHHHTCTTCCSSH----HH--HHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhc--CCeEEEECch------HhhhhhcccccccH----HH--HHHHHHHHHH
Confidence 457899999999999999999999887431 1245788554 44555544210011 11 1112233344
Q ss_pred HHHHHHhCCCcEEEeCCCCChHHHHH
Q 010176 290 LLVTALNEGRDVIMDGTLSWVPFVEQ 315 (516)
Q Consensus 290 la~~aL~~G~sVIvDaTfs~~~~r~~ 315 (516)
.+...++.|..||+|+++..+..|+.
T Consensus 436 ~~~~~l~~G~~VI~d~~~~~~~~r~~ 461 (546)
T 2gks_A 436 VASEIVKHNGVVICALVSPYRSARNQ 461 (546)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEEEcCCCCHHHHHH
Confidence 67778889999999998877655543
No 68
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.48 E-value=5.3e-07 Score=85.44 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
...+|.++|++||||||+++.|++.+ |+.+||+|.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-------g~~vid~D~~~ 47 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-------GAHVVNVDRIG 47 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-------CCEEEECcHHH
Confidence 45789999999999999999999987 45899988874
No 69
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.46 E-value=7.4e-06 Score=80.23 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=49.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCc-eEEE-eCcccccchHHHHHHhc-CCCCChhhHHHH-HHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVV-EADAFKETDVIYRALSS-KGHHDDMLQTAE-LVHQSSTD 285 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~-av~I-daD~ir~sD~irk~L~~-~~~~~~~~y~~e-~v~~~~~~ 285 (516)
.++.+|++.|++||||||+++.|.+.+... +.. .+.+ +|..-.-...+++-+.+ .....-..++.. .....-+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999887431 112 2222 22110001223443432 110000011111 11111122
Q ss_pred HHHHHHHHHHhCCCcEEEeC
Q 010176 286 AASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 286 ~a~~la~~aL~~G~sVIvDa 305 (516)
.+...+..+|++|..||.|=
T Consensus 103 ~~~~~I~paL~~g~~VI~DR 122 (236)
T 3lv8_A 103 LVENVIKPALARGEWVVGDR 122 (236)
T ss_dssp HHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEee
Confidence 33457888999999999993
No 70
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.45 E-value=1.4e-05 Score=76.78 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc---hHHHHHHhcCCCCChhhHHHHHHHH-HHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQ-SSTD 285 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s---D~irk~L~~~~~~~~~~y~~e~v~~-~~~~ 285 (516)
.++.+|++.|++||||||+++.|.+.+... +..++.. .+-..+ ..+++-+.......-..++....+- .-+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~--~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~ 79 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLT--REPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQ 79 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEE--ESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccc--cCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999887421 1122222 111111 1234434332110000111111011 1112
Q ss_pred HHHHHHHHHHhCCCcEEEeC
Q 010176 286 AASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 286 ~a~~la~~aL~~G~sVIvDa 305 (516)
.+...+..+|++|..||.|-
T Consensus 80 ~~~~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 80 HLAGVIRPALARGAVVLCDR 99 (213)
T ss_dssp HHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHCCCEEEECc
Confidence 23456788999999999994
No 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.44 E-value=2.7e-07 Score=85.50 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh-ccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~-l~~~~~~~~av~IdaD~ir 254 (516)
...++..|++.|+|||||||+++.|++. + +..++|+|.+-
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-------g~~~id~d~~~ 46 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELD-------GFQHLEVGKLV 46 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHST-------TEEEEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcC-------CCEEeeHHHHH
Confidence 4556788999999999999999999998 5 45899887653
No 72
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.43 E-value=1.7e-06 Score=81.75 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=26.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.|++.|+|||||||+++.|++.++ ..+|+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-------~~~i~~d~ 33 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-------IPQISTGD 33 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-------CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHH
Confidence 378899999999999999999884 47886644
No 73
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.41 E-value=1.1e-05 Score=74.32 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHhcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+|++.|+|||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999999884
No 74
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.41 E-value=1.7e-06 Score=80.10 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..+|.+|.|.|++||||||+++.|++. ++ .++|.|.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~-------~~id~d~~~ 42 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GY-------PVLDLDALA 42 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TC-------CEEEHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CC-------EEEcccHHH
Confidence 456899999999999999999999986 54 789888764
No 75
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.38 E-value=1.2e-05 Score=76.98 Aligned_cols=121 Identities=22% Similarity=0.224 Sum_probs=70.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHH--H-HHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ--S-STDAASSL 290 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~--~-~~~~a~~l 290 (516)
+|++.|||||||||.++.|++.++ .++|++. |.+|..+... +.-.......... . --+....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istG-----dllR~~i~~~--t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTG-----DILREAVQKG--TPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHH-----HHHHHHHHHT--CHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHH-----HHHHHHHHhc--ChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 578889999999999999999994 5889542 3334444331 0000000000000 0 00122346
Q ss_pred HHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccCCC
Q 010176 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 370 (516)
Q Consensus 291 a~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~~g 370 (516)
+...+.....+|+|+-=.+..+.+.+..+... .+
T Consensus 68 v~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~----------------------------------------------~~ 101 (206)
T 3sr0_A 68 IEEVFPKHGNVIFDGFPRTVKQAEALDEMLEK----------------------------------------------KG 101 (206)
T ss_dssp HHHHCCSSSCEEEESCCCSHHHHHHHHHHHHH----------------------------------------------TT
T ss_pred HHHhhccCCceEecCCchhHHHHHHHHhhHHH----------------------------------------------hc
Confidence 66667777789999876665544443322211 11
Q ss_pred ceE-EEEEEecCHHHHHHHHHHhhh
Q 010176 371 YRI-ELVGVVCDAYLAVVRGIRRAI 394 (516)
Q Consensus 371 y~I-~li~V~~d~elav~R~~~R~~ 394 (516)
..+ .++.+.||.++.+.|...|..
T Consensus 102 ~~~~~vi~l~v~~e~l~~Rl~~R~~ 126 (206)
T 3sr0_A 102 LKVDHVLLFEVPDEVVIERLSGRRI 126 (206)
T ss_dssp CCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred cccceeeecCCCHHHHHHHHhCCcc
Confidence 112 247789999999999999964
No 76
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.37 E-value=3.6e-06 Score=76.79 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=28.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|+|.|+|||||||+++.|++.++ ..++|.|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-------~~~~d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-------LVFLDSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcccHHH
Confidence 488899999999999999999984 4899666553
No 77
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.34 E-value=4.6e-05 Score=72.72 Aligned_cols=86 Identities=21% Similarity=0.321 Sum_probs=49.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCCh----hhHHHHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDA 286 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~----~~y~~e~v~~~~~~~ 286 (516)
..+|++-|+.||||||.++.|.+.+.- +..++.. +|+.-.-...+++-+......+. .++++.+ ...
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~---~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R-----~~~ 73 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASR-----REH 73 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHH-----HHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC---CCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH-----HHH
Confidence 468999999999999999999988731 2223332 23222122334554443211111 1112211 122
Q ss_pred HHHHHHHHHhCCCcEEEeC
Q 010176 287 ASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDa 305 (516)
+...+..+|++|..||.|-
T Consensus 74 ~~~~i~p~l~~g~~Vi~DR 92 (205)
T 4hlc_A 74 LVLKVIPALKEGKVVLCDR 92 (205)
T ss_dssp HHHTHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEecC
Confidence 3456788999999999994
No 78
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.33 E-value=8.4e-06 Score=78.69 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=29.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
-..|.++|++||||||+++.|.+ + |+.+||+|.+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-------g~~vidaD~ia 43 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-------GASLVDTDLIA 43 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-------CCcEEECcHHH
Confidence 35688999999999999999987 6 45899999864
No 79
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.31 E-value=1.1e-05 Score=77.46 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..++.+|.+.|+|||||||+++.|++.++ ..++|+|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~~~~ 52 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGAMYR 52 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC-------CceecCCCeeE
Confidence 45678899999999999999999999884 48897776643
No 80
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.31 E-value=7.2e-06 Score=77.36 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=30.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+..|.+.|+|||||||+++.|++.++ ..++++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ-------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCcceee
Confidence 56899999999999999999999884 48897766543
No 81
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.30 E-value=3.5e-06 Score=78.53 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=28.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|.|.|+|||||||+++.|++ + ++.+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-------g~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-------GAYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-------CCEEEEccHH
Confidence 688999999999999999998 7 4589977765
No 82
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.30 E-value=7.1e-06 Score=74.19 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=29.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..|++.|+|||||||+++.|++.+++ .++|+|++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~-------~~id~D~~~ 42 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL-------EVLDTDMII 42 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence 46888999999999999999999854 789776653
No 83
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.29 E-value=4.7e-06 Score=77.31 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=30.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.|.|++||||||+++.|++.++ ..++|.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-------CceeccchHHH
Confidence 899999999999999999999884 48897776653
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.28 E-value=5.1e-06 Score=78.06 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=34.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..+|.++.+.|+|||||||+++.|...+.. .+....+++.|.+...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccCcccCC
Confidence 456899999999999999999999886521 0124566777877543
No 85
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.23 E-value=1.3e-05 Score=78.08 Aligned_cols=96 Identities=22% Similarity=0.177 Sum_probs=46.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcccc--CCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSST 284 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~--~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~ 284 (516)
+..++.+|++.|++||||||+++.|++.+... ..+..++.. .|+.-.-...+++-+.... ...... .-.....-+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~-~~~~~~-~llf~a~R~ 98 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQP-MDLETE-ALLMFAGRR 98 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSC-CCHHHH-HHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCC-CCHHHH-HHHHHHHHH
Confidence 34568899999999999999999999887320 000122222 1210000112344343321 111100 001111112
Q ss_pred HHHHHHHHHHHhCCCcEEEeC
Q 010176 285 DAASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 285 ~~a~~la~~aL~~G~sVIvDa 305 (516)
..+...+..+|++|..||+|-
T Consensus 99 ~~~~~~i~p~l~~g~~VI~DR 119 (227)
T 3v9p_A 99 EHLALVIEPALARGDWVVSDR 119 (227)
T ss_dssp HHHHHTHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEec
Confidence 223456888999999999994
No 86
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.22 E-value=1.8e-05 Score=77.29 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+.+|.|.|+|||||||+++.|++.++ ..++|.|.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg-------~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN-------WRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-------CCcCCCCcee
Confidence 456899999999999999999999985 4788665554
No 87
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.21 E-value=3.5e-05 Score=72.42 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.+|.+.|++||||||+++.|++.++ ..++|.|.+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g-------~~~~~~d~~~ 38 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELS-------MIYVDTGAMY 38 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-------CceecCChHH
Confidence 367899999999999999999999884 4889776653
No 88
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.21 E-value=1.2e-05 Score=75.74 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..++.++.|.|+|||||||+++.|+..+... ++...+|.-|.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCC
Confidence 3568899999999999999999998876421 112445555544
No 89
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.21 E-value=1.6e-05 Score=77.20 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=51.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc-cCCCCceEE-E-eCcccccchHHHHHHhcCCCCChh----hHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDM----LQTAELVH 280 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~~~~~av~-I-daD~ir~sD~irk~L~~~~~~~~~----~y~~e~v~ 280 (516)
...+|.+|++.|++||||||+++.|.+.+.. . +..+++ . +|+.=.-...+++-+.+....... .+.+.+
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R-- 92 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMR-- 92 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHH--
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Confidence 4567999999999999999999999987732 1 112333 2 343211112234444432111110 112221
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeC
Q 010176 281 QSSTDAASSLLVTALNEGRDVIMDG 305 (516)
Q Consensus 281 ~~~~~~a~~la~~aL~~G~sVIvDa 305 (516)
+......+..+|++|..||.|=
T Consensus 93 ---~~~~~~~I~paL~~g~~VI~DR 114 (223)
T 3ld9_A 93 ---REHFVKIIKPSLMQKKIVICDR 114 (223)
T ss_dssp ---HHHHHHTHHHHHHTTCEEEEES
T ss_pred ---HHHHHHHHHHHHhcCCeEEEcc
Confidence 1223345778999999999995
No 90
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.20 E-value=3.1e-07 Score=85.27 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
|.++.+.|||||||||+.+.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999997653
No 91
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.17 E-value=2.7e-05 Score=76.19 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=26.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
-+.+.|+|||||||+++.|++.++ ..+|++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g-------~~~is~gd 41 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG-------IPQISTGD 41 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-------CCEECHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC-------CCeeechH
Confidence 356789999999999999999984 48896543
No 92
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.16 E-value=9.5e-06 Score=81.42 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
++.+|.|+|++||||||+++.|++.++.. +..+.+|+.|.|.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~--~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE--GVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH--TCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeeEeecchhhc
Confidence 56789999999999999999999877310 11368999999976
No 93
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.15 E-value=1.2e-06 Score=82.89 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|++.|||||||||+.+.|.++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998775
No 94
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.12 E-value=1.3e-05 Score=82.71 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+|.+|+|.||+||||||++..|++.+ +..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-------~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-------PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-------CEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-------CCcEEccccc
Confidence 456799999999999999999999998 4589999987
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.12 E-value=1.2e-06 Score=82.99 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+++.+|++.|||||||||+++.|+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999999876
No 96
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.11 E-value=9.1e-07 Score=82.71 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+|+|.|++||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998874
No 97
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.10 E-value=2e-05 Score=80.81 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+|.+|+|+||+||||||++..|++.+ +..+|+.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l-------~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL-------PCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-------CCcEEeccch
Confidence 56799999999999999999999998 4589999976
No 98
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.09 E-value=7e-05 Score=72.56 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+.+|.|.|++||||||+++.|++.+++ .++|.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-------~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGI-------HFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTC-------EEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCC-------cEEcHHHHH
Confidence 4678999999999999999999999954 889877654
No 99
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.06 E-value=3e-05 Score=79.30 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
....|.+|.|.|+|||||||+++.|...+......+...+|..|.+...
T Consensus 88 ~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 88 EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 3567999999999999999999999876631011235678888887544
No 100
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.04 E-value=9.1e-05 Score=71.42 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+|.+|++.|+|||||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999999884
No 101
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.00 E-value=7.5e-05 Score=70.81 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..+|.|.|++||||||+++.|++.+++ .++|.|.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~-------~~~D~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI-------PLYSKELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC-------CEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc-------CEECHHHH
Confidence 458999999999999999999999954 78874433
No 102
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.00 E-value=4.8e-05 Score=77.83 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc---ccchH-----HHHHHhcCCCC------ChhhHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF---KETDV-----IYRALSSKGHH------DDMLQTA 276 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i---r~sD~-----irk~L~~~~~~------~~~~y~~ 276 (516)
+|.+|+|.||+||||||++..|++.+ +..+|++|.+ +.-|. --.++.+..|+ +...|+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~ 74 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSV 74 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccH
Confidence 46789999999999999999999998 4589999976 21110 01112222110 1222333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEE-eCC
Q 010176 277 ELVHQSSTDAASSLLVTALNEGRDVIM-DGT 306 (516)
Q Consensus 277 e~v~~~~~~~a~~la~~aL~~G~sVIv-DaT 306 (516)
.. ....+.+.+...++.|+.+|+ =||
T Consensus 75 ~~----F~~~a~~~i~~i~~~gk~pIlVGGT 101 (322)
T 3exa_A 75 AD----FQDLATPLITEIHERGRLPFLVGGT 101 (322)
T ss_dssp HH----HHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred HH----HHHHHHHHHHHHHhCCCcEEEEcCc
Confidence 22 233455688888889986554 445
No 103
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.99 E-value=6e-06 Score=80.66 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...+|.+|++.|++||||||+++.|++.+
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999999999987
No 104
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.96 E-value=0.00014 Score=67.17 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.++.+.|||||||||+++.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999999999765
No 105
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=4.4e-06 Score=77.15 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+..++++.|||||||||+++.|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999865
No 106
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.92 E-value=5.8e-05 Score=69.78 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|.+|++.|+|||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 107
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.92 E-value=0.00046 Score=65.18 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=48.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 292 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~la~ 292 (516)
+|++-|+-||||||.++.|.+.+.- .+..+++. +|+.-.-...+++-+......+ .+.-..+..........+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~--~g~~v~~treP~~t~~~~~ir~~l~~~~~~~---~~~~ll~~a~r~~~~~~I~ 76 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK--RGKKVILKREPGGTETGEKIRKILLEEEVTP---KAELFLFLASRNLLVTEIK 76 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCSSHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEECCCCCcHHHHHHHHhhcccCCh---HHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999887732 11223332 2322111233444444322111 1111111111222335688
Q ss_pred HHHhCCCcEEEeC
Q 010176 293 TALNEGRDVIMDG 305 (516)
Q Consensus 293 ~aL~~G~sVIvDa 305 (516)
.+|+.|..||.|-
T Consensus 77 ~~L~~g~~Vi~DR 89 (197)
T 3hjn_A 77 QYLSEGYAVLLDR 89 (197)
T ss_dssp HHHTTTCEEEEES
T ss_pred HHHHCCCeEEecc
Confidence 8999999999994
No 108
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=6.5e-05 Score=74.03 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...|++.|+|||||||+++.|++.+++ .++|.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~-------~~~d~d~~ 82 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY-------TFFDCDTL 82 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC-------cEEeCcHH
Confidence 457889999999999999999999854 89966554
No 109
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.83 E-value=1.1e-05 Score=77.50 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=24.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
...++.+|.+.|++||||||+++.|+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999999865
No 110
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.81 E-value=2.4e-05 Score=75.24 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+|.+|++.|++||||||+++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999987
No 111
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.78 E-value=0.00012 Score=80.15 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.++.++++.|+|||||||+++.|+..+... .+....++|.|.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~-~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEM-GGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTT-CSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhccc-CCceEEEECCcHHH
Confidence 357899999999999999999999987421 00124468666553
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.71 E-value=4.5e-05 Score=73.47 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.1
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+-.+...++++.|||||||||+.+.|....
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 355678899999999999999999998865
No 113
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.66 E-value=6.9e-05 Score=76.51 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..+|.+|+|+||+||||||++..|++.+ +..+|++|.+
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 44 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSA 44 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEecccc
Confidence 3568899999999999999999999998 4588999875
No 114
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.57 E-value=5.5e-05 Score=78.00 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=32.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
++.+|+|+||+||||||++..|++.+ +..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKF-------NGEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence 46799999999999999999999998 4589999987
No 115
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.49 E-value=1.4e-05 Score=76.28 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.++.+|++.|||||||||+.+.|+...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44578899999999999999999999875
No 116
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.40 E-value=0.00012 Score=68.30 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.++.+|.+.|+|||||||+++.|+..++. ...+++.|.+-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-----RVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-----GEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecCccc
Confidence 46789999999999999999999987731 25778777654
No 117
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.30 E-value=0.00029 Score=74.33 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=30.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.+|+|.||+||||||++..|++.++ ..+|++|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCcc
Confidence 56899999999999999999999983 478999873
No 118
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.16 E-value=0.00021 Score=65.99 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+++.++++.|+|||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457799999999999999999998876
No 119
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.11 E-value=0.002 Score=62.10 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=25.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
++.+|++.|++||||||+++.|.+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999999984
No 120
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.09 E-value=0.00035 Score=67.42 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.-.++.+|.|.|+|||||||+++.|+..++
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999999999988764
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.07 E-value=0.00067 Score=72.27 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=36.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.+|.+|+++|++||||||++..|+..+. ..+....++++|.++..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~a 142 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPG 142 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchh
Confidence 3699999999999999999999987662 22346788999998764
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.94 E-value=0.00099 Score=66.89 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=37.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhcc--ccCCCCceEEEeCcccccchHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAFKETDVIYR 261 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~--~~~~~~~av~IdaD~ir~sD~irk 261 (516)
..++.+|.|.|+|||||||+++.|+..+. . ..+.+.+|+.|.+......++
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~--~~G~i~vi~~d~~~~~~~~~~ 129 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP--EHRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST--TCCCEEEEEGGGGBCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEecCCccCcHHHHH
Confidence 35688999999999999999999988653 1 123467788887754333333
No 123
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.88 E-value=0.0005 Score=68.53 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
..+.|..+++.||||+|||++++.++..++. ..+.+++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-----~~i~v~~ 69 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-----NPIMMSA 69 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-----CCEEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeH
Confidence 3467889999999999999999999999854 5677744
No 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.86 E-value=0.00084 Score=67.34 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=38.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCcccccchHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRAL 263 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~sD~irk~L 263 (516)
....|.+|.|+|+|||||||+++.|...+...+.....+.+ .-|.|-....++..+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 45678999999999999999999998876420000123444 888875554444443
No 125
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.73 E-value=0.00074 Score=73.13 Aligned_cols=43 Identities=7% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccc-cCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~-~~~~~~av~IdaD~ 252 (516)
.+++..|++.|+|||||||+++.|++.++. .+ +....++|.|.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g-~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGG-GRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS-CCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhc-CcceEEecCCC
Confidence 346789999999999999999999999852 11 12346787776
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.73 E-value=0.0012 Score=66.87 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=36.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
...+|.++++.|+|||||||++..|+..+.. .+....+++.|.++..
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~ 146 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAA 146 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHH
Confidence 3467899999999999999999999876632 1335677888988743
No 127
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.71 E-value=0.0014 Score=62.61 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|.-+++.|+||+||||+++.++.+++. ..+.++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~ 75 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEF 75 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHH
Confidence 45666889999999999999999998843 5667766554
No 128
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0014 Score=63.06 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|.-+++.|+||+||||+++.++..++. ..+.++..++.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~~~ 82 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSDFV 82 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCSST
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHHHH
Confidence 3555889999999999999999988743 45777665553
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00075 Score=63.21 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.++++.|||||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678999999999999999998754
No 130
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.57 E-value=0.0016 Score=64.48 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+++.|||||||||+++.|+...+. +.+.++..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence 889999999999999999998743 5677765444
No 131
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.55 E-value=0.0024 Score=64.61 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=31.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...+.++.|.|+|||||||+++.|..-+..........+|.-|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 467899999999999999999999876532100123456655544
No 132
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.52 E-value=0.00071 Score=64.36 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=18.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHH-Hhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIM-KES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La-~~l 236 (516)
.+++.++.+.|||||||||+++.|+ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3457789999999999999999999 654
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.002 Score=62.77 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|.-+++.|+||+||||+++.++..++. ..+.++...+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~ 87 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSEL 87 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHH
Confidence 34566889999999999999999998843 4566655443
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0026 Score=64.08 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=32.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
...+|.++.+.|+|||||||+++.|+..+.. .++...+.+.|.++
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR 140 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 4567899999999999999999999876632 12234445556665
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.48 E-value=0.0022 Score=62.95 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|.-+++.|+||+||||+++.++..++. ..+.+++.++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASL 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHH
Confidence 4667899999999999999999998843 4566665444
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.47 E-value=0.0014 Score=59.71 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..+++.|||||||||+++.++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36778999999999999999998766
No 137
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.46 E-value=0.018 Score=55.17 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L 263 (516)
..+.+|+++|.|||||+|+++.+.+.++. .++.++ .=+|++++..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~----~~~~vv-----~msD~iK~~~ 53 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA----DVCAVL-----RLSGPLKEQY 53 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT----TTEEEE-----CTHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC----CCceEE-----EccHHHHHHH
Confidence 35678999999999999999999886632 123444 2367776543
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.43 E-value=0.0027 Score=64.81 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..+|.++.+.|+|||||||+++.|+..+.. .++...+.+.|.++..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~ 171 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAG 171 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccc
Confidence 467999999999999999999999876532 1234556667776643
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0023 Score=68.02 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+.|+=|++.||||+|||++|++++.+.+. ....+++.++
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l 251 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQL 251 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence 356888999999999999999999999854 4566655444
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0023 Score=68.06 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...|+=|++.||||+|||++|++++.+++. ..+.|++.++
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l 251 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGI 251 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence 356788999999999999999999999854 5566655444
No 141
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.43 E-value=0.0028 Score=64.03 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+|.++.+.|+|||||||+++.|+..+.. .++...+.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCC
Confidence 6889999999999999999999876633 12344556666665
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.42 E-value=0.0027 Score=63.10 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...|.+++++|+||+||||+++.++..++. ..+.+|+...
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~ 84 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC 84 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc
Confidence 355788999999999999999999998853 5566765443
No 143
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.41 E-value=0.0022 Score=61.60 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+..|+|.|+|||||||++..|++.. + .+|+.|.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g-------~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG-------H-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT-------C-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC-------C-eEEecchh
Confidence 46889999999999999999999875 2 67777754
No 144
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.0024 Score=67.74 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..|.+|++.|++||||||++..|+..+.. .+....++++|.++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~ 139 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPA 139 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchh
Confidence 46899999999999999999999876632 2345678899988754
No 145
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0025 Score=67.60 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|+=|++.||||+|||++|++++.+++. ..+.|++.++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~l 242 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSEF 242 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecchh
Confidence 45788999999999999999999999854 4566654443
No 146
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0019 Score=57.43 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+..+++.|++|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345667899999999999999999876
No 147
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0028 Score=59.05 Aligned_cols=42 Identities=5% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+..+++.|+||+||||+++.++..+... .....+++.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHH
Confidence 45678899999999999999999876421 2245778776654
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0018 Score=60.65 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
-.+..++.+.|||||||||+.+.|+.-+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3556789999999999999999998765
No 149
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.37 E-value=0.0017 Score=62.87 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=34.8
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+..
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTND 71 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEccc
Confidence 34567789999999999999999999865532 23568887766643
No 150
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0062 Score=64.12 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.|+=+++.||||+|||++|++++.+.+. ..+.|++.++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l 218 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSGAEL 218 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEhHHh
Confidence 45777999999999999999999999854 4556654443
No 151
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.33 E-value=0.0016 Score=61.89 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
-.++.++.+.|||||||||+.+.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567789999999999999999998765
No 152
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0036 Score=64.83 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
...+|.++.+.|+|||||||+++.|+..+.. ..+...+...|.++
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r 197 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFR 197 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccc
Confidence 4567999999999999999999999876632 12234445556665
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.31 E-value=0.0036 Score=63.65 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=36.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
....|.+|.+.|++|+||||++..|+..+.. .+....+++.|.++..
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAG 147 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchh
Confidence 3467899999999999999999999876632 2346678899987643
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.29 E-value=0.0028 Score=62.46 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
....++++.|||||||||+.+.|+..+... ..+.+.++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc
Confidence 456799999999999999999998765320 024566655544
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.27 E-value=0.004 Score=61.97 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=28.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
..|.-+++.||||+||||+++.++..++. +.+.++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE
Confidence 45677899999999999999999998743 455663
No 156
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.27 E-value=0.0029 Score=61.72 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=31.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|.-+++.|+||+||||+++.++..++. ..+.+++..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~~~ 87 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT 87 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchhcc
Confidence 4556788999999999999999998843 56777776654
No 157
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.0036 Score=58.01 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+...++++.|+|||||||++..++... +.+.++++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence 456799999999999999999998722 23667887654
No 158
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.26 E-value=0.019 Score=59.84 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.++.+|.+-|+-||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999998873
No 159
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.23 E-value=0.002 Score=60.90 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=28.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ 252 (516)
++..++.+.|||||||||+++.++... .. ..+.++++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~ 69 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEE 69 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccC
Confidence 456799999999999999999988321 11 23456675544
No 160
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.22 E-value=0.012 Score=59.77 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=89.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~~ 289 (516)
..|.+|++-|.-||||||..+.|.+.+.. .+..++-... .++.+ + .+.. ..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp----rg~~V~~~~~--Pt~eE---~----------------~~~y----l~ 134 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNP----RSARVVALTK--PTETE---R----------------GQWY----FQ 134 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCT----TTEEEEECCS--CCHHH---H----------------TSCT----TH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcc----cCCeEEEeCC--cChHH---H----------------hchH----HH
Confidence 56999999999999999999999998853 2443441000 01101 0 0000 01
Q ss_pred HHHHHH-hCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchhhccccchhhhhhhhhccccC
Q 010176 290 LLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (516)
Q Consensus 290 la~~aL-~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~~v~~a~~~~~~~~~~~~~~~ 368 (516)
.....| +.|.-||+|-++-..--.+.+ + |+ -..+.|-..+..- ...|+....
T Consensus 135 R~~~~LP~~G~IvIfDRswYs~v~~~rv-------~--------g~------~~~~e~~~~~~~I------n~FE~~L~~ 187 (304)
T 3czq_A 135 RYVATFPTAGEFVLFDRSWYNRAGVEPV-------M--------GF------CTPDQYEQFLKEA------PRFEEMIAN 187 (304)
T ss_dssp HHHTTCCCTTCEEEEEECGGGGTTHHHH-------H--------TS------SCHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHhcccCCeEEEEECCcchHHHHHHH-------h--------cC------CCHHHHHHHHHHH------HHHHHHHHh
Confidence 233445 789999999776543211111 0 10 0111111111111 011112233
Q ss_pred CCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc----eEEEEecC
Q 010176 369 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD----NARLYCTN 432 (516)
Q Consensus 369 ~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD----~~~lydnn 432 (516)
.|+.+.-++++.+++....|...|...-.+ --|.+. .+..|.++...+..+....+ .|++.|.|
T Consensus 188 ~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~ 259 (304)
T 3czq_A 188 EGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGN 259 (304)
T ss_dssp HTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECS
T ss_pred CCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECC
Confidence 566677789999999999999888432111 122222 24566777777766655432 35555533
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0042 Score=62.20 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ir~s 256 (516)
...|..+++.|+||+||||+++.++..+... +.....+.+|+......
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 92 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence 3557789999999999999999998876110 00114567876555443
No 162
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.20 E-value=0.003 Score=61.35 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=33.6
Q ss_pred cccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 206 ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 206 ~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 66 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPI 66 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEES
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEh
Confidence 335567889999999999999999999865532 235677765444
No 163
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.19 E-value=0.0024 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.+.|+|||||||+.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998876
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.19 E-value=0.0044 Score=60.20 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
...|.-+++.|+||+||||+|+.++...+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34577899999999999999999999874
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.18 E-value=0.0026 Score=61.08 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
+++.|+|||||||+++.++..... +.+.++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV-----PFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH
Confidence 889999999999999999988732 5566643
No 166
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.18 E-value=0.02 Score=58.70 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
++..|.+-|+-||||||+++.|++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999998773
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.16 E-value=0.0039 Score=56.07 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
....+++.|+|||||||+++.++..... .+...++++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhh
Confidence 3456788999999999999999987632 11236788776554
No 168
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.16 E-value=0.0035 Score=57.28 Aligned_cols=28 Identities=21% Similarity=0.612 Sum_probs=24.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
-+...++.+.|+|||||||+.+.|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3556789999999999999999999876
No 169
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.14 E-value=0.0049 Score=66.59 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=34.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~ir~ 255 (516)
....|.++.|.|+|||||||+++.|+..+.. ..+-+.| +.|.++.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRA 334 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccch
Confidence 4567999999999999999999999876532 1234555 5777763
No 170
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.13 E-value=0.0046 Score=62.09 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.+|.++++.|++||||||++..|+..+.. ..+....+++.|.++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIA 148 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccch
Confidence 46789999999999999999999876631 11235678999987643
No 171
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0039 Score=66.74 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|+=||+.||||+|||++|++++.+++. ..+.+++.++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L 279 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSEL 279 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHh
Confidence 56888999999999999999999999854 4556655444
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.12 E-value=0.0044 Score=62.57 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=30.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|.-+++.||||+|||++++.++.++.. ...+.+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHH
Confidence 34578899999999999999999998721 24566766554
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.11 E-value=0.0027 Score=59.23 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcccc---C-CCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS---G-AATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~---~-~~~~av~IdaD~ 252 (516)
+...++.+.|+|||||||+++.|+...... + ...+.++++.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 356799999999999999999998743110 0 122357776654
No 174
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.0027 Score=62.86 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=34.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++...+..
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLNS 77 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEETTEETTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECCc
Confidence 4456789999999999999999999865532 24668887766643
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0052 Score=65.99 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=35.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY 260 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir 260 (516)
.+..+++.||||+||||+++.++.++++ ..+.+|+.++...+.+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~-----~~i~in~s~~~~~~~~~ 120 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNASDVRSKTLLN 120 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTTSCCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEeCCCcchHHHHH
Confidence 4568899999999999999999999854 56777777766554443
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.06 E-value=0.0032 Score=63.21 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.|.-+++.||||+|||++++.++.+.+. ..+.+++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEch
Confidence 4667899999999999999999998843 4555643
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.05 E-value=0.0027 Score=56.62 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..+++.|++|+||||+++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999999876
No 178
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0051 Score=65.34 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+.|+=|++.||||+|||++|++++.+.+. ..+.+++.++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v~~s~l~ 253 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRIVGSELI 253 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEEESGGGC
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEEEHHHhh
Confidence 355788999999999999999999999854 45666554443
No 179
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.03 E-value=0.0038 Score=57.37 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..|..+++.|++|+||||+++.++..+.
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456889999999999999999998774
No 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0051 Score=62.68 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=36.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-----CCceEEEeCcccccchHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-----ATNAVVVEADAFKETDVIYRA 262 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-----~~~av~IdaD~ir~sD~irk~ 262 (516)
....|..+++.||||+|||++++.++.++.-... .-..+.||+-.+.....++..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 4567888899999999999999999988731000 013567877666554444433
No 181
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0064 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
+++.|++|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998875
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.0043 Score=58.42 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...++++.|+|||||||++..++..... .+.+.++++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence 4678999999999999999988765421 123667886655
No 183
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.97 E-value=0.0087 Score=57.26 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...++.++++.|.+|+||||++..|+..+. .+....+||.|.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~ 51 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDT 51 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCS
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 456789999999999999999999997663 133567888774
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.96 E-value=0.0077 Score=60.10 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=29.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.-+++.|+||+||||+++.++...+. ..+.++...+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~ 92 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA-----NIKTTAAPMIE 92 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEecchhcc
Confidence 445789999999999999999998753 55667665543
No 185
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.95 E-value=0.0029 Score=60.82 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|-+.++.-.+.
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVD 69 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 4456778999999999999999999865432 2356778665553
No 186
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.95 E-value=0.091 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
++..|.+-|+-||||||+++.|++.+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999999884
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.0056 Score=62.54 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|.-+++.|+||+||||+++.++..++. ..+.+++.++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHh
Confidence 34667899999999999999999998843 4566765444
No 188
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.93 E-value=0.0055 Score=61.95 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.|..+++.||||+||||+++.++..++
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456688899999999999999999874
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.93 E-value=0.0041 Score=57.85 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.++.++|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4467888899999999999999876
No 190
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.93 E-value=0.0039 Score=58.60 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=25.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
+++|.|++||||||+|..|+.. +. ..++|.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~-----~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-AP-----QVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CS-----SEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CC-----CeEEEecC
Confidence 3789999999999999999866 42 45778653
No 191
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.92 E-value=0.0037 Score=61.89 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=34.5
Q ss_pred cccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 206 ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 206 ~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
...-....++.|.|+|||||||+.+.|+.-+.+ ..|.+.++.-.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGG
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcc
Confidence 334567789999999999999999999875532 2366888765554
No 192
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.91 E-value=0.0043 Score=61.75 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.+..++.+.|||||||||+.+.|+.-... ..|.+.++...+
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i 72 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPI 72 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 4456788999999999999999999865532 235688877665
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.91 E-value=0.0042 Score=57.32 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
|.-+++.|+||+||||+++.++..+.. .+...++++.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~ 90 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYV 90 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEh
Confidence 467888999999999999999987632 1224456643
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.90 E-value=0.0039 Score=57.91 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...++++.|+|||||||+++.++..... .+....+++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc
Confidence 4578999999999999999999865421 122456676554
No 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.89 E-value=0.0037 Score=61.56 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=33.3
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-....++.+.|+|||||||+.+.|+.-+.+ ..|.+.++...+
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 70 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNI 70 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 34567789999999999999999999865532 235677876555
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.89 E-value=0.0034 Score=60.86 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-.+..++.+.|+|||||||+.+.|+.-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44667899999999999999999998655
No 197
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.88 E-value=0.0045 Score=60.54 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=25.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
+++.|+|||||||+++.++.... .+.+.++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~ 106 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASG 106 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecH
Confidence 88999999999999999998873 25566643
No 198
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.88 E-value=0.0034 Score=61.30 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLA 74 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence 4456778999999999999999999876532 2356788765554
No 199
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.87 E-value=0.0021 Score=62.07 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|.-+++.|+||+||||+++.++...+. ..+.++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~ 80 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGGSSF 80 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCSCTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEechHHH
Confidence 344788999999999999999998743 3455655444
No 200
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.85 E-value=0.0036 Score=61.35 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=33.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDIT 72 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECT
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence 4456778999999999999999999865532 2356788765553
No 201
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.85 E-value=0.0047 Score=60.12 Aligned_cols=42 Identities=21% Similarity=0.118 Sum_probs=31.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-.. .++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 62 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADI 62 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 4455 88999999999999999999875532 235677765444
No 202
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.85 E-value=0.0042 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
|-+.+|.|+|||||||+.++|.--++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44889999999999999999987653
No 203
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.85 E-value=0.0036 Score=60.31 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=28.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
.-++..++.+.|+|||||||+.+.|+.-+.+ ..|.+.++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~ 68 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHS 68 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEEC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEEC
Confidence 4456778999999999999999999876532 12445554
No 204
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.85 E-value=0.0036 Score=60.75 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=33.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDIT 71 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence 4456778999999999999999999865532 2356778765553
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.83 E-value=0.01 Score=58.16 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=32.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..+++.|+||+||||+++.++..+.. .....+.++...+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEK 89 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCST
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeeccccccc
Confidence 47899999999999999999988732 1123577887776544
No 206
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.80 E-value=0.0025 Score=59.05 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.++.|.|+|||||||+++.|...+...+-..+.+.+|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 46778889999999999999877643111135566665543
No 207
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.80 E-value=0.0069 Score=59.74 Aligned_cols=38 Identities=32% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+.-+++.|++|+||||+++.++..++. ..+.++...+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~ 74 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAI 74 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecccc
Confidence 3456788999999999999999988743 4566655444
No 208
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.79 E-value=0.007 Score=59.39 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCC--CCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~--~~~av~IdaD~i 253 (516)
..+.-+++.|+||+||||+++.++..+...+. ....+.+++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 34556889999999999999999887632110 113466665544
No 209
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.79 E-value=0.0043 Score=61.33 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.0
Q ss_pred ccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
....-....++.+.|+|||||||+.+.|+.-..+ ..|-+.++.-.+
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i 88 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINL 88 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 3344567789999999999999999999865532 235677876544
No 210
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.77 E-value=0.0032 Score=60.42 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++...+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~ 73 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPI 73 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEh
Confidence 4456678889999999999999999865532 235677765444
No 211
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.77 E-value=0.004 Score=62.12 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=29.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+.-+++.|+||+||||+++.++..+... ....+++++..+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH
Confidence 34557889999999999999999876210 125677866554
No 212
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.76 E-value=0.0054 Score=56.95 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..++++.|+|||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4467888999999999999998865
No 213
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.75 E-value=0.0048 Score=60.70 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=33.4
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVV 80 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 34567789999999999999999999865532 2356777665443
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.74 E-value=0.011 Score=59.47 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=28.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+++.|+||+||||+++.++..+.... ....+.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCC
Confidence 788999999999999999998773200 1245677754443
No 215
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.72 E-value=0.0035 Score=63.48 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=35.8
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..-+...++.|.|+|||||||+.+.|+.-+.+ ..|.+.+|.-.+...
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQV 121 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSB
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccC
Confidence 34466789999999999999999999865532 236688887776643
No 216
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0078 Score=60.62 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...|..+++.|++|+||||+++.++..+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3557789999999999999999999875
No 217
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.70 E-value=0.005 Score=60.71 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-....++.+.|+|||||||+.+.|+.-..+ ..|.+.++.-.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~ 71 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERK 71 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 34567789999999999999999999865432 235677766444
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.69 E-value=0.0099 Score=62.96 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=36.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~ir~s 256 (516)
...|.+|+++|++|+||||++..|+..+.- . +....++++|.++..
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~--~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLRE--KHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHHH--TSCCCEEEEECCCSSTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEEecCCCCcc
Confidence 356899999999999999999999876632 1 346788999998754
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.007 Score=60.44 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~i 253 (516)
...|..+++.|++|+||||+++.++..+..... ....+++++...
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 456778999999999999999999986621000 114567765433
No 220
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.62 E-value=0.0073 Score=61.41 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=27.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.|.-+++.||||+||||+|+.++..++. ..+.+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~-----~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV-----PFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEech
Confidence 3556788999999999999999998843 4455544
No 221
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.62 E-value=0.0052 Score=61.23 Aligned_cols=45 Identities=18% Similarity=0.033 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..-.+..++.+.|+|||||||+.+.|+.-+.+ ..|.+.++.-.+.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPG 86 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcc
Confidence 34456788999999999999999999875532 2356777665443
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.61 E-value=0.01 Score=62.54 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...++++.||+||||||+.+.|+..+.. ..+-+++.-|.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~---~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS---SERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC---TTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEEecccc
Confidence 4568999999999999999999987642 123455544544
No 223
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.61 E-value=0.01 Score=52.51 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=25.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|++.|+||+|||++|+.+...... .....+ ++...+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~--~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRN--AQGEFV-YRELTP 62 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTT--TTSCCE-EEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCc--cCCCEE-EECCCC
Confidence 678999999999999999886521 112345 755443
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.55 E-value=0.0087 Score=63.73 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.|.-|++.||||+||||+++.|+..++. ..+.+++..+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~-----~~~~v~~~~~~ 87 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT 87 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCC-----Cceeecchhhc
Confidence 4566899999999999999999999854 45666654443
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.54 E-value=0.0095 Score=60.77 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.-+++.|+||+||||+++.++..++. ..+.++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~-----~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI-----PIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecchhh
Confidence 445788999999999999999998843 4566665444
No 226
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.53 E-value=0.01 Score=61.10 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.-+++.|+||+|||++++.++...+. ..+.+++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 567899999999999999999998843 55667665543
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.0059 Score=57.47 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ 252 (516)
+...++++.|+|||||||++..++.....+ +...+.++++.+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 356789999999999999999998742110 0123678887655
No 228
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.50 E-value=0.0072 Score=62.93 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-+.+.++++.|||||||||+++.|+...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44667899999999999999999999876
No 229
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.49 E-value=0.006 Score=59.51 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=32.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh--ccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE--SFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~--l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.- ..+ ..|.+.++.-.+.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENIL 70 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECC
Confidence 4456778999999999999999999874 211 1256778765554
No 230
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.49 E-value=0.006 Score=59.97 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=34.4
Q ss_pred ccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
....-....++.+.|+|||||||+.+.|+.-+. ..|.+.++.-.+.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~G~I~i~g~~i~ 84 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----AEGDIKIGGKNVN 84 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC----CEEEEEETTEEGG
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCC----CCeEEEECCEEhh
Confidence 334556778999999999999999999986542 1366888765554
No 231
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.48 E-value=0.007 Score=59.71 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=32.9
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhc--cccCCCCceEEEeCcccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES--FWSGAATNAVVVEADAFK 254 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l--~~~~~~~~av~IdaD~ir 254 (516)
..-....++.+.|+|||||||+.+.|+.-. .. ..|-+.++.-.+.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLL 87 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECC
Confidence 345677899999999999999999998742 11 1256778765553
No 232
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.45 E-value=0.0065 Score=62.14 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
.|.-+++.||||+||||+++.++..++. ..+.+++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~ 117 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS 117 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeH
Confidence 3455788899999999999999998843 4455533
No 233
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.41 E-value=0.0086 Score=61.59 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=27.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
..++++.|+|||||||+.+.|...... ..+.+.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence 457889999999999999999987643 24567775
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.41 E-value=0.015 Score=66.28 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=26.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
...|+=|++.||||+|||+++++++.+++.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356889999999999999999999999853
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.40 E-value=0.014 Score=61.65 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.|.++++.|++||||||++..|+..+.. .+....+++.|.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA 140 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccccCch
Confidence 6888999999999999999999877632 2346678899988754
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.40 E-value=0.0082 Score=59.10 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=29.9
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
-....++++.|+|||||||+++.++...... .+....+++.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 3567799999999999999999998765321 11134566554
No 237
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.39 E-value=0.011 Score=62.33 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|.-+++.||||+||||+++.++..+. ....+.+++.++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~l 204 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 204 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHHH
Confidence 456788999999999999999999872 124556655443
No 238
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.37 E-value=0.0096 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
|.+.+|.|+|||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987554
No 239
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.36 E-value=0.012 Score=63.07 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|.-+++.||||+||||+++.++.+.+. ..+.++..++
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~ 85 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDF 85 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHH
Confidence 4555889999999999999999998743 4566765444
No 240
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.35 E-value=0.0057 Score=64.79 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=34.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..|..|++.|++|+||||++..|+..+.. .+....++++|.++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~--~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK--RGLKPALIAADTYRP 140 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH--HHCCEEEECCSCCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccccCc
Confidence 45788999999999999999999876521 122568899998764
No 241
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.33 E-value=0.0097 Score=56.43 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
..|.++++.|+||||||+++..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999886544
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.32 E-value=0.012 Score=59.08 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=34.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
|.++++.|++|+||||++..|+..+.. .+....+++.|..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPA 140 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHH
Confidence 889999999999999999999876632 2345688899987653
No 243
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.32 E-value=0.0063 Score=59.62 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=32.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|+|||||||+.+.|+.-+.. . |.+.++...+.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLE 64 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGG
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECC
Confidence 4456778999999999999999999866532 2 56777665553
No 244
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.32 E-value=0.0072 Score=57.56 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
..++.+.|+|||||||+.+.|+.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457888999999999999999865
No 245
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.30 E-value=0.007 Score=62.35 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=35.9
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHH
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIY 260 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~ir 260 (516)
..-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+....+.+
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhh
Confidence 34566788999999999999999999865432 2356788765554333333
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.29 E-value=0.015 Score=58.21 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
+|.++.+.|++|+||||++..|+..+.. .+....+++.|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP 139 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH
Confidence 6888888899999999999999876532 234567788887654
No 247
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.29 E-value=0.012 Score=63.46 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=34.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..|..|+++|++||||||++..|+..+.- .+....+|++|.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~a 143 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAG 143 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchh
Confidence 56889999999999999999999976521 1235688999988754
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.28 E-value=0.011 Score=61.13 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..++++.|||||||||+.+.++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45899999999999999999987653
No 249
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.23 E-value=0.0068 Score=59.42 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.6
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-....++.+.|+|||||||+.+.|+.-.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567789999999999999999998655
No 250
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.23 E-value=0.01 Score=61.58 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=36.4
Q ss_pred cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.....-.+..++.+.|+|||||||+.+.|+.-..+ ..|.+.++..++..
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~ 94 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTT 94 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCc
Confidence 33445567789999999999999999999865432 23668887766654
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.23 E-value=0.015 Score=61.37 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.|.-+++.||||+||||+|+.++..++. ....+.+++-++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHH
Confidence 4566889999999999999999999852 124455654433
No 252
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.22 E-value=0.0092 Score=61.81 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=32.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i 68 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTI 68 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 4466788999999999999999999875532 235677766554
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.0089 Score=59.84 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.|. +++.||||+||||+++.++..+
T Consensus 34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 34 RDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 34466 8899999999999999999865
No 254
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.21 E-value=0.0081 Score=60.86 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=25.9
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..-++..++.|.|||||||||+++.|+.-+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345677899999999999999999998765
No 255
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.18 E-value=0.011 Score=61.01 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
....++++.|+|||||||+.+.|+..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999987653
No 256
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.0093 Score=58.92 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=31.6
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-. ..++.+.|+|||||||+.+.|+.-. + ..|-+.++...+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---~~G~I~~~g~~~ 67 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-P---YSGNIFINGMEV 67 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C---CEEEEEETTEEG
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C---CCcEEEECCEEC
Confidence 3456 7789999999999999999998655 3 235677765433
No 257
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.16 E-value=0.015 Score=58.62 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=20.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++++.|++||||||+.+.|+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 477889999999999999998653
No 258
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.16 E-value=0.011 Score=61.65 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=33.5
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-....++.+.|||||||||+.+.|+.-... ..|-+.++...+.
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMN 68 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECT
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECC
Confidence 4566789999999999999999999865532 2356778766554
No 259
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.16 E-value=0.014 Score=54.91 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
...-+++.|+||+||||++..|.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3567899999999999999999975
No 260
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.16 E-value=0.023 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+|.++|++||||||+++.|.+.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g 26 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998774
No 261
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.13 E-value=0.02 Score=58.43 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
..++..|+++|.||+||||++..|+..+.. .+....+++.|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE--RGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh--CCCceEEEecCC
Confidence 346778899999999999999999876521 233566777763
No 262
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.13 E-value=0.026 Score=54.34 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=34.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~ 265 (516)
.-+++.|+||+|||++++.+...... .....+.+|...+.. +.....+++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~~~~~-~~~~~~l~g 79 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALNE-NLLDSELFG 79 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGGGSCH-HHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecCCCCh-hHHHHHhcC
Confidence 34678999999999999999987632 122467788766632 333444555
No 263
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.13 E-value=0.014 Score=60.35 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+..+++|.|+|||||||++..++..... .+..+++|++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence 5689999999999999999999876522 12346789887643
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.10 E-value=0.01 Score=60.35 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEe
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Id 249 (516)
..++++.|+|||||||+.+.|+..... ..+.+.++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEEC
Confidence 457889999999999999999876643 23566665
No 265
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.10 E-value=0.0097 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.+.|+|||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47789999999999999998765
No 266
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.09 E-value=0.01 Score=59.64 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
|..+++.||||+||||+++.++..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47889999999999999999999884
No 267
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.08 E-value=0.012 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..++++.|+|||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997777654
No 268
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.012 Score=60.83 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
..-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~ 68 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVT 68 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECT
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 34566788999999999999999999865432 2356777665553
No 269
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.07 E-value=0.013 Score=60.73 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLV 67 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEEC
Confidence 34566788999999999999999999865432 235677766544
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.99 E-value=0.011 Score=57.78 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..+++|.|+|||||||++..++...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998644
No 271
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.97 E-value=0.019 Score=61.92 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
|.=+++.||||+||||+++.++..... +.+.++.-++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~ 100 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDF 100 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHH
Confidence 444899999999999999999988742 5677776554
No 272
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.96 E-value=0.012 Score=60.94 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=31.9
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 79 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRV 79 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence 4456778999999999999999999865432 235677766544
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.92 E-value=0.014 Score=60.72 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 75 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDV 75 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence 34566789999999999999999999865432 235677766444
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.90 E-value=0.011 Score=57.06 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
...+++.||||+||||++..|+..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998873
No 275
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.83 E-value=0.013 Score=57.86 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.+.|+|||||||+.+.|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999998765
No 276
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.81 E-value=0.012 Score=59.03 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=26.3
Q ss_pred ccccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 205 ~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....-....++.+.|+|||||||+.+.|+.-+
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33355677899999999999999999998654
No 277
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.013 Score=58.83 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
|. +++.||||+||||+++.++..+.
T Consensus 47 ~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 47 PH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 44 78899999999999999998863
No 278
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.80 E-value=0.018 Score=62.78 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=34.1
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.-++...+.+.|+|||||||+.+.|+.-+.+ ..|.+.+|.-++.+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDV---DSGSICLDGHDVRD 409 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEhhh
Confidence 3456678999999999999999999876543 24668887755543
No 279
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.04 Score=51.08 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+..+++.|.+||||||+...|+..+.. ......++.|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~---~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN---EVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT---TSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEecCC
Confidence 4556778899999999999999987521 12334565544
No 280
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.74 E-value=0.014 Score=60.73 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~ 67 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLV 67 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEEC
Confidence 4456778999999999999999999865432 235577765444
No 281
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.74 E-value=0.016 Score=62.14 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
..|.-+++.|+||+|||++++.++...+. ..+.+|+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~ 271 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLING 271 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEc
Confidence 44666889999999999999999998743 4566644
No 282
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.73 E-value=0.021 Score=61.86 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.+..+++.||||+||||+++.++..+.. ....|+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEeccc
Confidence 4667899999999999999999988743 4556655443
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.67 E-value=0.017 Score=62.34 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE-eCccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAF 253 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I-daD~i 253 (516)
.+..+++.|++||||||+.+.|+..... ..+.+.| +++++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~---~~giitied~~E~ 299 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP---DAKVVSIEDTREI 299 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEESSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC---CCCEEEEcCcccc
Confidence 4556899999999999999999876632 2344555 34444
No 284
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.67 E-value=0.019 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.|.+.+|.|+|||||||+..+|.--+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987555
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.66 E-value=0.016 Score=65.94 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
-..|.-+++.|+|||||||+++.|+..++. ..+.++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~ 271 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLING 271 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEc
Confidence 355777999999999999999999988743 4566654
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.64 E-value=0.02 Score=58.83 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+..++++.|+|||||||++..++..... .+..+.+++.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC
Confidence 4679999999999999999999865421 123578898875
No 287
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.64 E-value=0.025 Score=57.65 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
......++.+.|+|||||||+.+.|...+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999998654
No 288
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.57 E-value=0.017 Score=62.97 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
++...+.+.|+|||||||+.+.|+.-+.+ ..|.+.+|.-++++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLRE 409 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccc
Confidence 45678999999999999999999876532 23668887766654
No 289
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.55 E-value=0.02 Score=57.34 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
+.|..+++.|++|+||||+++.++..+.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3466889999999999999999998874
No 290
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=94.54 E-value=0.012 Score=59.35 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=42.5
Q ss_pred cCCccccc---cccc--CCccccccccccchhhhhhh--hcccccccccccchhcccccccccCC-chhHHHHHHHHHhh
Q 010176 94 KGCEDNIY---EYFS--KEAEPESLYVKLVEEFDRCI--LSYFTFHWSHASLMISQVLSVESEKK-TKLKDFIMAATRKQ 165 (516)
Q Consensus 94 r~cHGDLh---~~~~--~~~~~fD~cIEF~~~l~R~i--l~d~AF~~~~~~~~~~l~MDle~~g~-~~la~~~l~~yl~~ 165 (516)
.-||||+| ++++ +.+.++| + +.. .+. +.|+|+ ++|+++..+. +..+..|+++|.+.
T Consensus 207 ~~~HgD~~~~N~l~~~~~~~~~iD-~----e~~-~~~~~~~Dla~----------~~~~~~~~~~~~~~~~~fl~~Y~~~ 270 (339)
T 3i1a_A 207 VLCHSDIHAGNVLVGNEESIYIID-W----DEP-MLAPKERDLMF----------IGGGVGNVWNKPHEIQYFYEGYGEI 270 (339)
T ss_dssp EEECSCCCGGGEEECGGGCEEECC-C----SSC-EEECTHHHHTT----------TTCCTTSCSCCHHHHHHHHHHHCCC
T ss_pred eeEeCCCCcCCEEEeCCCeEEEEE-C----CCC-eeCCHHHHHHH----------HHhhhhhccCCHHHHHHHHHHhCCC
Confidence 56999999 5554 3577888 3 223 444 999999 9999877765 67888999999865
No 291
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.019 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+...+++++|+||+||||++..++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35679999999999999999987653
No 292
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.51 E-value=0.042 Score=55.92 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ 252 (516)
+...++++.|+|||||||++..++...-.+ +.+.++++|+.+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 457899999999999999999998752110 0134678887655
No 293
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.50 E-value=0.017 Score=63.28 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=34.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
-++...+.+.|+|||||||+.+.|+.-+.+ ..|.+.+|.-++++.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKI 422 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhC
Confidence 455679999999999999999999876533 236688887776643
No 294
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.49 E-value=0.024 Score=54.80 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=27.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I 248 (516)
.+..+++++|+|||||||++..++.+... .+..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEE
Confidence 45689999999999999999998877632 22345555
No 295
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.48 E-value=0.018 Score=60.68 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.-+++.|+||+||||+++.++..+.........+++++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 556888999999999999999886621000124577776554
No 296
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.46 E-value=0.011 Score=60.91 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
.-....++.+.|||||||||+.+.|+.-..+ ..|-+.++...+
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 69 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLV 69 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 4566788999999999999999999865432 235577765444
No 297
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.02 Score=56.97 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
+++.|+||+||||+++.++..+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 298
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.38 E-value=0.013 Score=63.97 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
-++...+.+.|||||||||+.+.|..-+.+ ..|.+.+|.-+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~ 408 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDF 408 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhC
Confidence 355678999999999999999999876533 236688887776543
No 299
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.31 E-value=0.029 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.++.-|++.|++|+||||+...|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35567888999999999999999864
No 300
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.31 E-value=0.022 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
-+++.|+||+|||++++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 377889999999999999999874
No 301
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.28 E-value=0.028 Score=57.98 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+..++++.|+|||||||++..++..... .+..+.+|+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 5679999999999999999999875421 123578898865
No 302
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.26 E-value=0.029 Score=58.15 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=24.8
Q ss_pred EEEEEecCHHHHHHHHHHhhhhcCcccchhh
Q 010176 374 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS 404 (516)
Q Consensus 374 ~li~V~~d~elav~R~~~R~~~gGr~Vp~~~ 404 (516)
..++|+||+++.++|.++|.+..|..-..+.
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~ee 321 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRHLQSGLVTTIAE 321 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSCSSHHH
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCCCCHHH
Confidence 4589999999999999999988787333333
No 303
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.26 E-value=0.018 Score=62.96 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=33.6
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
-++...+.+.|+|||||||+.+.|+.-+.+ ..|.+.+|.-++++
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGHDIRQ 410 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTEETTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCEEhhh
Confidence 345678999999999999999999876532 23668887766654
No 304
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.24 E-value=0.022 Score=58.26 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
...+.|.|+|||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56788899999999999999998763
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.23 E-value=0.031 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.-+++.|+||+||||+++.++..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578899999999999999999874
No 306
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.22 E-value=0.05 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.4
Q ss_pred CCCEEEEE--ecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLM--GGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli--~G~sGSGKSTlA~~La~~l 236 (516)
..|..++| .|++|+||||+++.++...
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35778888 9999999999999998765
No 307
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.21 E-value=0.032 Score=56.19 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ 252 (516)
...++++.|+|||||||++..++...-.. +.+..+++|+.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46799999999999999999998754110 0123568887654
No 308
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.20 E-value=0.012 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
+++.|+||+|||++|+.+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6789999999999999987654
No 309
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.17 E-value=0.02 Score=62.58 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=34.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
++...+.+.|+|||||||+.+.|..-+.+ ..|.+.+|.-++++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTV 410 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccC
Confidence 45678999999999999999999876533 236688888777643
No 310
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.16 E-value=0.31 Score=52.51 Aligned_cols=167 Identities=16% Similarity=0.021 Sum_probs=87.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a 287 (516)
...|+||++-|.-||||+|..+.|.+.+.. .+..++- +. .++.+ +. + . | +
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p----rg~~V~a---~~~Pt~~E---~~---~--~--y------------l 90 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDP----RLIEVQS---FLRPSDEE---LE---R--P--P------------Q 90 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCG----GGEEEEE---CSSCCHHH---HT---S--C--T------------T
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCc----cCCeEEE---eCCCChhh---cc---C--C--h------------h
Confidence 477999999999999999999999999853 2333330 11 11111 00 0 0 1 1
Q ss_pred HHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccch-hhccccchhhhhhhhhccc
Q 010176 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYW-EQVKEGEEDYQQKENRQVF 366 (516)
Q Consensus 288 ~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw-~~v~~a~~~~~~~~~~~~~ 366 (516)
.......=..|.-+|+|-++-.. .+... + + |. ..+..| ..+..- ...|+..
T Consensus 91 ~R~~~~lP~~G~IvIfdRSwYs~----~~v~r---v------~--g~-------~~~~~~~~~~~~i------~~FE~~L 142 (500)
T 3czp_A 91 WRFWRRLPPKGRTGIFFGNWYSQ----MLYAR---V------E--GH-------IKEAKLDQAIDAA------ERFERML 142 (500)
T ss_dssp HHHHHHCCCTTCEEEEESCHHHH----HHHHH---H------T--TS-------SCHHHHHHHHHHH------HHHHHHH
T ss_pred hhHHHhCCCCCeEEEEeCchhhH----HHHHH---H------h--cC-------CCHHHHHHHHHHH------HHHHHHH
Confidence 11223333589999999665322 11111 1 1 11 111111 111111 1122334
Q ss_pred cCCCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc----eEEEEecC
Q 010176 367 SRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD----NARLYCTN 432 (516)
Q Consensus 367 ~~~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD----~~~lydnn 432 (516)
...|+.+..++++.+++....|...|...-.+ --|.+. ....|..+......+....| -|++.+.+
T Consensus 143 ~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~ 216 (500)
T 3czp_A 143 CDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGA 216 (500)
T ss_dssp HHTTCEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECS
T ss_pred hcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECC
Confidence 56788888899999999999999998652222 122222 24556666676666666554 36666644
No 311
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.15 E-value=0.028 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.|.+.+|.|+|||||||+..++.-.+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999985544
No 312
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.14 E-value=0.046 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++..|++.|.+|+||||+...++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45566777999999999999999875
No 313
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.14 E-value=0.031 Score=60.12 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=29.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHH--HHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDI--MKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~L--a~~l~~~~~~~~av~IdaD~ 252 (516)
++..++++.|+|||||||+++.+ ..-... ..+.++|+..+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~---~~g~i~v~g~~ 78 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---DEPGVFVTFEE 78 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence 45789999999999999999994 332221 23568887655
No 314
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.11 E-value=0.038 Score=52.02 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I 248 (516)
.+..++++.|+|||||||.+-.++.+... .+..+.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEE
Confidence 44689999999999999999998877632 23345555
No 315
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.11 E-value=0.028 Score=54.78 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.|. +++.|++|+||||+++.++..+
T Consensus 38 ~~~-~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 38 IPH-LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCC-EEEESSSSSSHHHHHHHHHHHH
T ss_pred CCe-EEEECcCCcCHHHHHHHHHHHh
Confidence 344 8899999999999999999875
No 316
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.08 E-value=0.029 Score=57.71 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+.+.+|.|+|||||||+..+|.-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 448889999999999999998743
No 317
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.06 E-value=0.025 Score=59.15 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=34.8
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
..-....++.+.|||||||||+.+.|+.-.. ..|.+.++..++...
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSI 87 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcC
Confidence 3456778999999999999999999986432 236688887766543
No 318
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.05 E-value=0.032 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
+++.|++|+||||+++.++..+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 319
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.04 E-value=0.025 Score=57.86 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc--c-cCC-CCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF--W-SGA-ATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~--~-~~~-~~~av~IdaD~i 253 (516)
+...++.|.|+|||||||++..++.... . .|. ++.+++|+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4578999999999999999999987651 1 000 123488877543
No 320
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.03 E-value=0.041 Score=54.14 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=28.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+++|.|++|+||||+++.+...... ..++++....
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhh
Confidence 8899999999999999999987632 4578876543
No 321
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.02 E-value=0.06 Score=53.77 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=35.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccchHHHHHHhcC
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK 266 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD~irk~L~~~ 266 (516)
.-+++.|+||+|||++|+.+...... .....+.+|+..+.. +.....+++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~--~~~~~v~v~~~~~~~-~l~~~~lfg~ 76 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSAR--SDRPLVTLNCAALNE-SLLESELFGH 76 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSC--SSSCCCEEECSSCCH-HHHHHHHTCC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcc--cCCCeEEEeCCCCCh-HHHHHHhcCc
Confidence 34678999999999999999986521 122467888777643 3344556664
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.00 E-value=0.029 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...+++.|+|||||||+.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998754
No 323
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.95 E-value=0.036 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.-|++.|.+|+||||+...+....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345567888999999999999998753
No 324
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.95 E-value=0.03 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-+++.|++||||||+.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457889999999999999998753
No 325
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.033 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.|. +++.|++|+||||+++.++..+
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 355 8899999999999999999875
No 326
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.92 E-value=0.021 Score=52.30 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=23.2
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.......+++.|+|||||||+.+.|...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4456778999999999999999988643
No 327
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.87 E-value=0.038 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+.-|++.|+||+||||+...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356888999999999999999864
No 328
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.87 E-value=0.019 Score=57.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.1
Q ss_pred EEEecCCCCCHHHHHHHHHHhcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~ 237 (516)
+++.|+||+|||++++.++..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88899999999999999998773
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.83 E-value=0.048 Score=55.40 Aligned_cols=43 Identities=26% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...+..+.+.|+||+||||+...|+..+.. .+....+++.|..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeecCC
Confidence 356778888999999999999999865421 1224566666654
No 330
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.81 E-value=0.073 Score=55.72 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhcccc----CCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~----~~~~~av~IdaD~ 252 (516)
...++.|.|+|||||||++..++-....+ +...+.++|+...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 46789999999999999999876332110 0123578888765
No 331
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.72 E-value=0.06 Score=52.65 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=27.6
Q ss_pred cccccCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (516)
Q Consensus 204 ~~~~~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I 248 (516)
|.+++..+..|.++.|+|||||||.+-.++.... +.+....++
T Consensus 11 p~~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~ 53 (234)
T 2orv_A 11 PGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVI 53 (234)
T ss_dssp -------CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEE
T ss_pred CCCCCCCceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEE
Confidence 3444556789999999999999998888877653 223345555
No 332
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.65 E-value=0.037 Score=55.52 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=26.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeC
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEA 250 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~-~~~~~~~av~Ida 250 (516)
+.-+++.|+||+|||+++..++..+. .. +..+.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 45678899999999999999988663 21 224556643
No 333
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.65 E-value=0.035 Score=60.34 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.+..++.+.|+|||||||+.+.|+..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566899999999999999999998754
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.64 E-value=0.042 Score=50.74 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.-|++.|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34557788999999999999998765
No 335
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.54 E-value=0.045 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....|.+.|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999998754
No 336
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.53 E-value=0.04 Score=55.38 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
....+++++|+||+||||++..++..... .+....+++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECC
Confidence 45679999999999999999999876522 12345677554
No 337
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.52 E-value=0.044 Score=56.70 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...+++|.|+||+||||++..++..... .+..+.+|+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCC
Confidence 4678999999999999999999876421 123678898875
No 338
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.47 E-value=0.047 Score=48.13 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|++|+||||+...+....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 345568889999999999999998654
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.43 E-value=0.042 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|++.|.+|+||||+...+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5667999999999999998653
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.40 E-value=0.05 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-|++.|.+|+||||+...+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 347888999999999999998654
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.39 E-value=0.05 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4457888999999999999998654
No 342
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.38 E-value=0.043 Score=56.23 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=26.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
..++++.|+||+||||++.+++...+ ..+.+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence 46788999999999999999987632 13456655
No 343
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.37 E-value=0.05 Score=48.00 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.-|++.|.+|+||||+...+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345567788999999999999997643
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.28 E-value=0.07 Score=51.94 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.-|+++|++|+||||++-.++..+-- .+....+++.|.-.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~--~G~~V~v~d~D~q~ 46 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR--QGVRVMAGVVETHG 46 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--CCCCEEEEEeCCCC
Confidence 44899999999999999888876521 13356778887643
No 345
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.26 E-value=0.043 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...++.+.|+|||||||+.+.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35688899999999999999999 55
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.21 E-value=0.061 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458889999999999999998654
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.055 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.-|++.|++|+||||+...|....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567788999999999999998754
No 348
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.18 E-value=0.24 Score=53.42 Aligned_cols=160 Identities=11% Similarity=0.064 Sum_probs=90.0
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 286 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~ 286 (516)
....|+||++-|.-||||+|..+.|.+.+.. .+..++- +. .++.+. .++ |.
T Consensus 296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldp----rg~~V~~---~~~Pt~~E~------~~~----yl----------- 347 (500)
T 3czp_A 296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDP----RQYHIVP---IAAPTEEER------AQP----YL----------- 347 (500)
T ss_dssp GGGCEEEEEEEESTTSCHHHHHHHHHTTSCG----GGCEEEE---CCSCCHHHH------TSC----TT-----------
T ss_pred hCCCCEEEEEeccCCCCHHHHHHHHHHhcCc----cCCeEEE---eCCCChhhh------cch----HH-----------
Confidence 3468999999999999999999999998853 2333330 11 111110 010 11
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh-hccccchhhhhhhhhcc
Q 010176 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQV 365 (516)
Q Consensus 287 a~~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~-~v~~a~~~~~~~~~~~~ 365 (516)
.......=..|.-+|+|-++-..--.+.+. |+ ..+..|+ .+..- ...|+.
T Consensus 348 -~R~~~~lP~~G~i~IfDRswY~~~~v~rv~---------------g~-------~~~~~~~~~~~~i------~~FE~~ 398 (500)
T 3czp_A 348 -WRFWRHIPARRQFTIFDRSWYGRVLVERIE---------------GF-------CAPADWLRAYGEI------NDFEEQ 398 (500)
T ss_dssp -HHHHTTCCCTTCEEEEESCGGGGGTHHHHH---------------TS-------SCHHHHHHHHHHH------HHHHHH
T ss_pred -HHHHHhCCCCCeEEEEeCcchhhHHHHHHh---------------cC-------CCHHHHHHHHHHH------HHHHHH
Confidence 112222334799999998886553333221 11 1122222 11111 111222
Q ss_pred ccCCCceEEEEEEecCHHHHHHHHHHhhhhcCc---ccchhh-hHhHHHHHHHhHHHhhccCc
Q 010176 366 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCELVD 424 (516)
Q Consensus 366 ~~~~gy~I~li~V~~d~elav~R~~~R~~~gGr---~Vp~~~-ql~s~~rf~~~~~~y~~lvD 424 (516)
....|+.+..+++..+++....|...|-..-.. --|.+. .+..|..+......+....|
T Consensus 399 L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~ 461 (500)
T 3czp_A 399 LSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTS 461 (500)
T ss_dssp HHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHC
T ss_pred HhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 345688888899999999999999999753222 222222 24456666666666655444
No 349
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.038 Score=58.89 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...++.|.|+|||||||+.+.|+.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34567788999999999999998654
No 350
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.17 E-value=0.068 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...|....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345668889999999999999998764
No 351
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.16 E-value=0.048 Score=58.64 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.. .++.+.|+|||||||+.+.|+.-+
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 44 789999999999999999998755
No 352
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.15 E-value=0.07 Score=54.76 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
-++|.|+|||||||+++.++..... .+...+++|++
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPE 72 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESS
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3577899999999999999876522 13355677764
No 353
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.09 E-value=0.067 Score=47.14 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.++.-|++.|.+|+||||+...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34556888999999999999999754
No 354
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.08 E-value=0.051 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.=|++.|.+|+||||+...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347888999999999999998654
No 355
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.07 E-value=0.066 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457888999999999999998653
No 356
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.07 E-value=0.054 Score=48.65 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...|....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568889999999999999998754
No 357
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.06 E-value=0.071 Score=52.40 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=27.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+++|.|++|+||||+++.++... +.++++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeec
Confidence 578899999999999999999876 247786543
No 358
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.03 E-value=0.048 Score=54.46 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+...++++.|+|||||||++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999865
No 359
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.03 E-value=0.047 Score=59.17 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....++.+.|+|||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566789999999999999999998755
No 360
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.00 E-value=0.065 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
...-+++.|+||+||||++..|...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4577999999999999999999875
No 361
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.99 E-value=0.097 Score=50.45 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEE
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~I 248 (516)
.+..|.++.|+|||||||.+-.++..... .+..+.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~ 62 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVF 62 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEE
Confidence 44689999999999999999998877632 23345555
No 362
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.98 E-value=0.069 Score=47.52 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...-|++.|.+|+||||+...+....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34557889999999999999998653
No 363
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.97 E-value=0.058 Score=54.35 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=26.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
..+.|..+++.|++|+||||+++.+++.+..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3455778999999999999999999998753
No 364
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.96 E-value=0.074 Score=46.43 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.-|++.|.+|+||||+...+....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345668889999999999999997643
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.94 E-value=0.055 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457888999999999999998754
No 366
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.92 E-value=0.047 Score=57.84 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=22.7
Q ss_pred cCCCCEE--EEEecCCCCCHHHHHHHHHHh
Q 010176 208 SERSPVL--LLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 208 ~~~~P~L--Ili~G~sGSGKSTlA~~La~~ 235 (516)
.-....+ +.+.|+|||||||+.+.|...
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3455667 889999999999999999864
No 367
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.91 E-value=0.061 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+.-|++.|.||+||||+...|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456888999999999999999864
No 368
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.90 E-value=0.042 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~ 234 (516)
|-+.++.|+|||||||+..+|.-
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 44899999999999999999973
No 369
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.87 E-value=0.076 Score=59.33 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.8
Q ss_pred CCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.+|. -+++.|+||+|||++++.++..++. ..+.+|..++..
T Consensus 485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~-----~~~~i~~s~~~~ 526 (758)
T 1r6b_X 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYME 526 (758)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcC-----CEEEEechhhcc
Confidence 3443 6889999999999999999998842 567787766643
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.81 E-value=0.059 Score=56.82 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
....+++++|+||+||||++..++...... .+..+.+++.+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC
Confidence 456799999999999999999998765210 12245666544
No 371
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.81 E-value=0.057 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEecCCCCCHHHHHHHHHHh
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.-|++.|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 44788899999999999999864
No 372
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.81 E-value=0.11 Score=52.88 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=34.0
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...+++++++|-.|+||||++..++..+. ..+....+||.|-
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~ 54 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDP 54 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCS
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCC
Confidence 44578899999999999999999988762 3345678999993
No 373
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.81 E-value=0.058 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457888999999999999998653
No 374
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=92.81 E-value=0.23 Score=49.88 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=77.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc-cchHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir-~sD~irk~L~~~~~~~~~~y~~e~v~~~~~~~a~ 288 (516)
..|+||++-|.-||||++..+.|.+.+.+ .++.++ .+. .++.++. ++ .+.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldP----Rg~~V~---a~~~Pt~eE~~------~~----------------ylw 123 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDP----QGVQLT---AFKAPTDEEKS------HD----------------FLW 123 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCG----GGEEEE---ECCSCCHHHHT------SC----------------TTH
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCc----CceEEE---ECCCCChhhhc------CC----------------HHH
Confidence 47999999999999999999999999853 233333 111 1211100 10 011
Q ss_pred HHHHHHHhCCCcEEEeCCCCChHHHHHHHHHHHhhhhhcccccccccccCCCcccccchh-hccccchhhhhhhhhcccc
Q 010176 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWE-QVKEGEEDYQQKENRQVFS 367 (516)
Q Consensus 289 ~la~~aL~~G~sVIvDaTfs~~~~r~~~~~lAr~~h~~~y~~~~gY~~~~~~~~~e~yw~-~v~~a~~~~~~~~~~~~~~ 367 (516)
+-....=..|.-+|+|.++-..-.++.+. |+ ..+..|+ .+.+- ...|+...
T Consensus 124 R~~~~lP~~G~I~IFdRSwY~~vlverV~---------------g~-------~~~~~~~~~~~~I------~~FE~~L~ 175 (289)
T 3rhf_A 124 RIEKQVPAAGMVGVFDRSQYEDVLIHRVH---------------GW-------ADAAELERRYAAI------NDFESRLT 175 (289)
T ss_dssp HHHTTCCCTTCEEEEESCGGGGGTHHHHT---------------TS-------SCHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHhCCCCCeEEEEeCchhhhHhHHHHh---------------cC-------CCHHHHHHHHHHH------HHHHHHHH
Confidence 12233345799999999887654443321 11 1112221 11110 12223345
Q ss_pred CCCceEEEEEEecCHHHHHHHHHHhhh
Q 010176 368 RKPYRIELVGVVCDAYLAVVRGIRRAI 394 (516)
Q Consensus 368 ~~gy~I~li~V~~d~elav~R~~~R~~ 394 (516)
..|+.|.=+++..+.+....|...|-.
T Consensus 176 ~~G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 176 EQGTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp HTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 678887779999999999999999875
No 375
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.78 E-value=0.079 Score=54.32 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=28.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
+++|.|+|||||||++-.++....-.+.+..+++||+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 789999999999999998876542100123578887755
No 376
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.77 E-value=0.032 Score=63.45 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..|.-+++.||||+||||+++.++..++. +.+.++..++
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~l 547 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSSS
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechHh
Confidence 35667889999999999999999998843 5566665544
No 377
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.77 E-value=0.06 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.-|++.|.+|+||||+...|....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 34567888999999999999998653
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.77 E-value=0.059 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.=|++.|.+|+||||+...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 347888999999999999998543
No 379
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.74 E-value=0.095 Score=53.45 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.3
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
....+++++++|..|+||||++..|+..+- ..+....+||.|-
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLA--EKGLKVVIVSTDP 64 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHH--HSSCCEEEEECCT
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 345678999999999999999999987652 2244678899987
No 380
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.71 E-value=0.056 Score=55.90 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...++.+.|+|||||||+.+.|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 34688899999999999999998655
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.70 E-value=0.059 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
.|.+.+|.|+|||||||+..+|.=
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999864
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.68 E-value=0.056 Score=48.76 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=18.6
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 010176 214 LLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~ 234 (516)
-|++.|+||+||||+.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 377889999999999999975
No 383
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.66 E-value=0.072 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...+++.||||+|||+++.+|+...
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999865
No 384
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.65 E-value=0.058 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.-|++.|.+|+||||+...+....
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345668889999999999999998543
No 385
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.65 E-value=0.057 Score=56.32 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..|.+++|.|+|||||||+..++.--+
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 447889999999999999999997654
No 386
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.60 E-value=0.08 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.+.-|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455777899999999999999854
No 387
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.59 E-value=0.061 Score=53.78 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.6
Q ss_pred ccCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 207 LSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 207 ~~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.++.|-.|.+.|.||+||||+...|...-
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356677889999999999999999998653
No 388
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.57 E-value=0.088 Score=52.96 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=32.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
++++++++|..|+||||++..|+..+- ..+....+||+|-
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDP 52 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCC
Confidence 368999999999999999999987662 2244678899997
No 389
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.57 E-value=0.065 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..+.+.|+|||||||+.+.|..-.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999998743
No 390
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.56 E-value=0.1 Score=58.47 Aligned_cols=44 Identities=16% Similarity=0.432 Sum_probs=32.8
Q ss_pred CCCE-EEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 210 ~~P~-LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.+|. -+++.||||+|||++|+.++..+.. .....+.+|..++..
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYME 562 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhccc
Confidence 4454 5889999999999999999988732 123567887766643
No 391
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=92.56 E-value=0.094 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
...+++|+|.|| ||+|+.+.|.+..
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhC
Confidence 346778888898 7999999999865
No 392
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.55 E-value=0.074 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
...-+++.|+||+||||+|..|...
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999998764
No 393
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.55 E-value=0.053 Score=64.86 Aligned_cols=110 Identities=14% Similarity=0.244 Sum_probs=61.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHHHhcC-CCC---C----hhh-H-HHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRALSSK-GHH---D----DML-Q-TAE 277 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~L~~~-~~~---~----~~~-y-~~e 277 (516)
++..++.+.|++||||||+++.|...+.. ..|.+.||.-+++.-+ .+|+.+.=. +.+ . +.+ + .+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 34568999999999999999999987744 3467888876666543 234442211 000 0 000 0 000
Q ss_pred HHHHHHHHHHH----HHHHHHHhCCCcEEEe--CCCCChHHHHHHHHHHHhh
Q 010176 278 LVHQSSTDAAS----SLLVTALNEGRDVIMD--GTLSWVPFVEQTIAMARNV 323 (516)
Q Consensus 278 ~v~~~~~~~a~----~la~~aL~~G~sVIvD--aTfs~~~~r~~~~~lAr~~ 323 (516)
...++..+++. ..--..|..|.+..+. ++.....++++ +++||.+
T Consensus 519 ~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl 569 (1321)
T 4f4c_A 519 ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR-IAIARAL 569 (1321)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH-HHHHHHH
Confidence 01112222111 1223456788877664 45566666666 5777765
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.50 E-value=0.079 Score=47.67 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.=|++.|.+|+||||+...+....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 345668889999999999999998643
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.50 E-value=0.083 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.=|++.|.+|+||||+...+....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 447888999999999999998653
No 396
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.46 E-value=0.056 Score=58.59 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....++.|.|+|||||||+.+.|+.-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998755
No 397
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.43 E-value=0.074 Score=50.42 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345667888999999999999998754
No 398
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.43 E-value=0.071 Score=46.51 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4457888999999999999998653
No 399
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.43 E-value=0.079 Score=48.12 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...|....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345668889999999999999998654
No 400
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.42 E-value=0.07 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.1
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~ 234 (516)
|++.|.+|+||||+...+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999999964
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.42 E-value=0.085 Score=46.23 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+.=|++.|.+|+||||+...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345788899999999999999754
No 402
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.41 E-value=0.074 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4557889999999999999998643
No 403
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.40 E-value=0.064 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..++.+.|+|||||||+.+.|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4678889999999999999998654
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.38 E-value=0.072 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..-|++.|.+|+||||+...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4557888999999999999998654
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.069 Score=58.91 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.....++.+.|+|||||||+.+.|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4567789999999999999999998755
No 406
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.38 E-value=0.068 Score=60.79 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
....+++|.|||||||||+.+.++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3457899999999999999999875
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.35 E-value=0.075 Score=47.24 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...+....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567889999999999999998643
No 408
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.34 E-value=0.062 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
.++.-|++.|++|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567788899999999999998763
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.32 E-value=0.065 Score=46.68 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.7
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 010176 215 LLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~ 234 (516)
|++.|.+|+||||+...+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 67889999999999999863
No 410
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.31 E-value=0.099 Score=59.52 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=33.5
Q ss_pred CCC-EEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P-~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
.+| .-+++.|+||+|||++|+.|+..+.. .....+.||..++...
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~--~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEK 630 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHHHS--SGGGEEEECTTTCCSS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhccch
Confidence 344 47889999999999999999988732 1235678888776543
No 411
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.30 E-value=0.08 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~ 234 (516)
|-+.++.|+|||||||+.+.+.-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 44899999999999999999874
No 412
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=92.26 E-value=0.044 Score=55.13 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..++.|+|.|| ||+|+.+.|.++.
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~ 121 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEY 121 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhC
Confidence 44556677777 5999999999876
No 413
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.19 E-value=0.1 Score=47.59 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=30.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
+.+.++++-.|+||||++..|+..+.- .+....+||.|--.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEECCCCC
Confidence 456677788999999999999877632 23467889998543
No 414
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.18 E-value=0.078 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...+....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34557888999999999999998653
No 415
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.16 E-value=0.11 Score=51.09 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
+.+++|.+.|-.|+||||++-.|+..+.- .+..+.+||.|--
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 45566666699999999999999876632 2346788999963
No 416
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.13 E-value=0.087 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|++.|.+|+||||+...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6788999999999999998654
No 417
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.13 E-value=0.072 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....++.|.|+|||||||+.+.|+.-+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998755
No 418
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.12 E-value=0.18 Score=50.52 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=29.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhcc-ccCCCCceEEEeCc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD 251 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~-~~~~~~~av~IdaD 251 (516)
+..+++.||+|+||||+++.++...+ +....++...++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 56889999999999999999987531 11123467778765
No 419
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.11 E-value=0.032 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.++.|.|||||||||+.+.|+.-+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 4567889999999999999987664
No 420
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.10 E-value=0.14 Score=51.72 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
...++++++|..|.||||++..|+..+. ..+....+||+|--
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA--~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMS--KVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHH--TSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence 4467889999999999999999987763 23446788999864
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.10 E-value=0.077 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-|++.|.+|+||||+...+....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3557888999999999999998643
No 422
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.10 E-value=0.057 Score=58.64 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..++.+.|+|||||||+.+.|+.-.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998755
No 423
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.09 E-value=0.094 Score=47.21 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
..+.-|++.|.+|+||||+...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45566888899999999999998754
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.05 E-value=0.096 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...|....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34557888999999999999998653
No 425
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.04 E-value=0.062 Score=64.11 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=34.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
-+....+.+.|+|||||||+.+.|...+.+ ..|.+.+|..+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~ 457 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTI 457 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhC
Confidence 345678999999999999999999876633 336788887776643
No 426
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.01 E-value=0.13 Score=58.49 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~ 238 (516)
..|.=+++.||||+|||.+|++++.+.+.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 45667899999999999999999999843
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.00 E-value=0.079 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4557888999999999999998654
No 428
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.97 E-value=0.1 Score=49.65 Aligned_cols=41 Identities=24% Similarity=0.206 Sum_probs=24.8
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeC
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~Ida 250 (516)
...+.+|.++.|+|||||||..-........ .+....++.+
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp 56 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKY 56 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEcc
Confidence 3456789999999999999654444443322 1235566644
No 429
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.95 E-value=0.059 Score=58.05 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
+++.|+||+|||++|+.++..+
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGB
T ss_pred eEeecCchHHHHHHHHHHHHHH
Confidence 6778999999999999999877
No 430
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.94 E-value=0.091 Score=47.44 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.-|++.|.+|+||||+...+....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567889999999999999998653
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.93 E-value=0.085 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
+.=|++.|.+|+||||+...|...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 455788999999999999998643
No 432
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.90 E-value=0.19 Score=47.15 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=31.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCC-CCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~-~~~av~IdaD~i 253 (516)
..+.++++-.|+||||++-.|+..+. .. +....+||.|.-
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la--~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALS--QEPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHT--TSTTCCEEEEECCTT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHH--hCcCCCEEEEECCCC
Confidence 45667778899999999999998773 22 456789999865
No 433
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.90 E-value=0.076 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.0
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
..+++.|+||+||||+++.|+..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3578899999999999999998774
No 434
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.90 E-value=0.11 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4457888999999999999998653
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.89 E-value=0.09 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...|....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457889999999999999998654
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.88 E-value=0.095 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...|....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678888999999999999998643
No 437
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.87 E-value=0.09 Score=46.40 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.-|++.|.+|+||||+...+....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34567889999999999999998654
No 438
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.86 E-value=0.083 Score=56.00 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
-+++.|+||+||||+++.++..+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999886
No 439
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.86 E-value=0.092 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.383 Sum_probs=19.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
-|++.|.+|+||||+...+....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 45667999999999999998653
No 440
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.86 E-value=0.079 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEecCCCCCHHHHHHHHHHhc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l 236 (516)
|++.|.+|+||||+...+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 5678999999999999998653
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.85 E-value=0.07 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....++.+.|+|||||||+.+.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456789999999999999999998755
No 442
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.83 E-value=0.034 Score=57.20 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=22.4
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..... ++++.|+|||||||+.+.|.--+
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 34445 99999999999999999985433
No 443
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.76 E-value=0.12 Score=46.89 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+..=|++.|.+|+||||+...+....
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567889999999999999988654
No 444
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.13 Score=46.33 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...|....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 344567888999999999999998643
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.73 E-value=0.093 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...|....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567889999999999999998754
No 446
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.70 E-value=0.14 Score=55.69 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=33.4
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...+++++++|.+|.||||++-.|+..+- ..+....+||.|-
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA--~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLA--EQGKRVLLVSTDP 46 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCT
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 35578899999999999999999987662 2244678899994
No 447
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.69 E-value=0.11 Score=47.06 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
....=|++.|.+|+||||+...+....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 345668899999999999999998654
No 448
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.69 E-value=0.14 Score=51.13 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCEEEEEec-CCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G-~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
.+++|+++| -+|.||||++..|+..+.. .+..+.+||+|.-+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID~D~r~~ 146 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQ--SDQKVLFIDADLRRG 146 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHH--TTCCEEEEECCTTTC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHh--CCCcEEEEECCCCCc
Confidence 445555555 5899999999999876632 234678999997543
No 449
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.68 E-value=0.095 Score=55.05 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
....+++++|+||+||||++..++..... ..+..+.+++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC
Confidence 34679999999999999999999876521 112346777554
No 450
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.67 E-value=0.091 Score=60.76 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDI 232 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~L 232 (516)
...+++|.|||||||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.65 E-value=0.11 Score=45.87 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.=|++.|.+|+||||+...+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 344557788999999999999998643
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.085 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.+.|+|||||||+.+.|+.-+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 568999999999999999998755
No 453
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.62 E-value=0.1 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457889999999999999998643
No 454
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.61 E-value=0.1 Score=46.91 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567888999999999999987543
No 455
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.60 E-value=0.086 Score=56.60 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
.+..++++.|+|||||||+++.++..... .+...+++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~e 318 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYE 318 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence 35678999999999999999999876532 12234556443
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.55 E-value=0.085 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-|++.|.+|+||||+...+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4557888999999999999998543
No 457
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.53 E-value=0.1 Score=53.49 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
....|++++|.||+||||++..++..... .+..+.+++.+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE 83 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE 83 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC
Confidence 44579999999999999999999876421 12345666554
No 458
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.41 E-value=0.074 Score=61.40 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La 233 (516)
....+++|.|||||||||+.+.++
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 446799999999999999999875
No 459
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.39 E-value=0.091 Score=59.48 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCCHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~ 234 (516)
..+++|.|||||||||+.+.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 46899999999999999999875
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.38 E-value=0.13 Score=46.90 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..+.-|++.|.+|+||||+...+....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 445678889999999999999998654
No 461
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.34 E-value=0.13 Score=45.93 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.++.-|++.|.+|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45667888999999999999998743
No 462
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.32 E-value=0.12 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34557888999999999999998754
No 463
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.28 E-value=0.083 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHh
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~ 235 (516)
=|++.|+||+||||+.+.|...
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3588899999999999998753
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.21 E-value=0.1 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.++.-|++.|.+|+||||+...+....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567888999999999999987543
No 465
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.14 E-value=0.12 Score=46.55 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...|....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3567888999999999999998654
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.13 E-value=0.13 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4457889999999999999998654
No 467
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.12 E-value=0.11 Score=56.82 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..++++.|+||+||||++..++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578889999999999999998755
No 468
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.12 Score=46.23 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-|++.|.+|+||||+...|....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568889999999999999998654
No 469
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.15 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45568888999999999999998653
No 470
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.06 E-value=0.13 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
..=|++.|.+|+||||+.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457888999999999998776554
No 471
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.05 E-value=0.12 Score=54.69 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
.+..+++++|.||+||||++..++..... .+..+.+++...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEm 235 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEM 235 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCC
Confidence 45679999999999999999999876522 123566775543
No 472
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.02 E-value=0.094 Score=60.91 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 208 SERSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 208 ~~~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
.-.+..++.+.|+|||||||+.+.|+.
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445678899999999999999999984
No 473
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.98 E-value=0.19 Score=48.26 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
.+++.+++|-.|+||||++-.|+..+. .+....+||.|--.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQA 67 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCC
Confidence 345556688899999999999998773 24567889998643
No 474
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.96 E-value=0.12 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhc
Q 010176 214 LLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 214 LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+++.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78889999999999999998776
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.96 E-value=0.12 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-|++.|.+|+||||+...+....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457888999999999999998643
No 476
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.96 E-value=0.11 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHH
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La 233 (516)
...-|++.|.+|+||||+...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999999999985
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.94 E-value=0.12 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.=|++.|.+|+||||+...|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 447888999999999999998654
No 478
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.15 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHh
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~ 235 (516)
.++.-|++.|.+|+||||+...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44566888899999999999999854
No 479
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.13 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.=|++.|.+|+||||+...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 457888999999999999998754
No 480
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.86 E-value=0.11 Score=61.91 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~s 256 (516)
++...+.+.|+|||||||+.+.|..-..+ ..|.+.+|.-+++..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccC
Confidence 45678999999999999999999875532 236688887777643
No 481
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.85 E-value=0.14 Score=46.61 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
++.=|++.|.+|+||||+...|....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44567889999999999999998754
No 482
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.84 E-value=0.14 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIM 233 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La 233 (516)
+++.=|++-|.+||||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456667888999999999999984
No 483
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.81 E-value=0.13 Score=52.80 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=23.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~ 237 (516)
.+...+.+.|+|||||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566788899999999999999998763
No 484
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.12 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.2
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4557888999999999999998654
No 485
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.79 E-value=0.23 Score=50.97 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCc
Q 010176 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (516)
Q Consensus 209 ~~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD 251 (516)
...++++++.|-.|+||||++..|+..+.....+....+||+|
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3446899999999999999999998765200234567889999
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.76 E-value=0.14 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.-|++.|.+|+||||+...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457778999999999999998754
No 487
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.69 E-value=0.23 Score=47.92 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir 254 (516)
...+.+++|-.|+||||++-.|+..+.. .+....+||.|.-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~--~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYAR--QGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHH--TTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 4466677889999999999999877632 23467889998765
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.69 E-value=0.051 Score=55.00 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+..++.+.|+|||||||+.+.|....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 35688999999999999999987544
No 489
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.67 E-value=0.1 Score=62.36 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcccccch--HHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD--VIYRA 262 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~sD--~irk~ 262 (516)
+....+.++|++||||||+++.|..-+.+ ..|.+.||.-++++-+ .+|+.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCHHHHHhh
Confidence 34557889999999999999999865533 3477999887777543 34444
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.64 E-value=0.13 Score=46.96 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
+.=|++.|.+|+||||+...|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557888999999999999998654
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.64 E-value=0.17 Score=53.87 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
....+++|+|+||+||||++..++..... ..+..+.+++.+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~ 281 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEE 281 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccC
Confidence 45679999999999999999999876521 1123567776644
No 492
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.62 E-value=0.14 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCCHHHHHHHHHH
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~ 234 (516)
+.-|++.|++|+||||+...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44578889999999999999864
No 493
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.58 E-value=0.3 Score=48.51 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccccc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ir~ 255 (516)
..++.++++-+|.||||++..|+..+. ..+....+||+|.-+.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLIDCDMRKG 134 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEECCTTTC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeccCCCC
Confidence 345667777899999999999988763 2345788999998654
No 494
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.55 E-value=0.24 Score=50.75 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
...++++++|-.|.||||++-.|+-.+.....+....+||+|-
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3467899999999999999999987662002345678999997
No 495
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.53 E-value=0.1 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
|. +.+.|+|||||||+.+.|+.-.
T Consensus 46 p~-iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PA-IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred Ce-EEEECCCCChHHHHHHHHhCCC
Confidence 44 7889999999999999998654
No 496
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.50 E-value=0.23 Score=46.48 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=30.4
Q ss_pred CEEEEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCccc
Q 010176 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (516)
Q Consensus 212 P~LIli~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~i 253 (516)
..+.++++-.|+||||++..|+..+.. .+....+||.|.-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGD--RGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHh--cCCeEEEEeCCCC
Confidence 356677888999999999999877632 2346788999874
No 497
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.43 E-value=0.16 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHhc
Q 010176 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 213 ~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.-|++.|+||+||||+...|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 457888999999999999998643
No 498
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.41 E-value=0.16 Score=47.41 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.7
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccCCCCceEEEeCcc
Q 010176 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (516)
Q Consensus 215 Ili~G~sGSGKSTlA~~La~~l~~~~~~~~av~IdaD~ 252 (516)
|.+.|-.|+||||++..|+..+. ..+....+||.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 33489999999999999998773 2345678899987
No 499
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.41 E-value=0.16 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCCHHHHHHHHHH
Q 010176 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (516)
Q Consensus 210 ~~P~LIli~G~sGSGKSTlA~~La~ 234 (516)
..+.+++|.|++|.||||++..+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4578999999999999999999863
No 500
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.40 E-value=0.15 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHHHhc
Q 010176 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (516)
Q Consensus 211 ~P~LIli~G~sGSGKSTlA~~La~~l 236 (516)
.+.=|++.|.+|+||||+...+....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568889999999999999998754
Done!