Query 010177
Match_columns 516
No_of_seqs 154 out of 247
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 21:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 5E-106 1E-110 831.5 35.0 432 33-476 1-442 (447)
2 PF04111 APG6: Autophagy prote 100.0 1.1E-96 2E-101 751.5 25.5 304 168-479 1-313 (314)
3 PF10186 Atg14: UV radiation r 99.4 7.2E-11 1.6E-15 117.3 26.4 244 167-413 11-273 (302)
4 KOG2751 Beclin-like protein [S 99.2 1.1E-10 2.3E-15 123.2 9.6 318 103-486 36-398 (447)
5 KOG2896 UV radiation resistanc 98.6 6.9E-06 1.5E-10 86.0 22.5 162 237-413 123-309 (377)
6 PF04111 APG6: Autophagy prote 97.5 0.029 6.2E-07 58.5 23.2 213 189-418 42-311 (314)
7 COG1579 Zn-ribbon protein, pos 96.9 0.083 1.8E-06 53.5 18.0 29 177-205 11-39 (239)
8 KOG0250 DNA repair protein RAD 96.8 0.061 1.3E-06 63.5 18.8 86 218-303 380-466 (1074)
9 TIGR02169 SMC_prok_A chromosom 96.1 0.16 3.5E-06 59.6 16.9 68 231-298 434-501 (1164)
10 PRK03918 chromosome segregatio 95.9 0.39 8.4E-06 55.6 18.1 23 263-285 304-326 (880)
11 PF04156 IncA: IncA protein; 95.8 0.55 1.2E-05 44.7 16.1 96 177-278 89-184 (191)
12 COG1579 Zn-ribbon protein, pos 95.8 0.55 1.2E-05 47.7 16.6 101 216-328 95-203 (239)
13 TIGR02169 SMC_prok_A chromosom 95.8 0.48 1E-05 55.8 18.6 13 394-406 534-546 (1164)
14 PF04849 HAP1_N: HAP1 N-termin 95.7 0.73 1.6E-05 48.3 17.4 158 145-303 116-306 (306)
15 PRK11637 AmiB activator; Provi 95.6 0.25 5.3E-06 53.2 14.4 75 179-259 43-117 (428)
16 PHA02562 46 endonuclease subun 95.6 0.28 6.1E-06 53.7 15.0 33 167-200 284-316 (562)
17 PF11932 DUF3450: Protein of u 95.6 1.1 2.5E-05 44.8 18.2 27 300-328 166-192 (251)
18 KOG0979 Structural maintenance 95.6 0.69 1.5E-05 54.7 18.3 111 170-281 197-312 (1072)
19 COG1196 Smc Chromosome segrega 95.4 0.25 5.3E-06 59.7 14.8 100 236-343 437-540 (1163)
20 PF08317 Spc7: Spc7 kinetochor 95.4 0.93 2E-05 47.4 17.2 46 143-188 78-127 (325)
21 PRK11637 AmiB activator; Provi 95.3 1.2 2.5E-05 48.1 18.2 65 222-286 175-239 (428)
22 TIGR02168 SMC_prok_B chromosom 95.1 1 2.3E-05 52.8 18.5 11 395-405 533-543 (1179)
23 TIGR02168 SMC_prok_B chromosom 95.1 1.4 3E-05 51.8 19.3 21 395-415 1025-1045(1179)
24 PRK09039 hypothetical protein; 94.8 1.5 3.2E-05 46.4 16.8 22 452-473 282-303 (343)
25 KOG0996 Structural maintenance 94.6 1.1 2.4E-05 53.9 16.4 95 226-336 537-633 (1293)
26 smart00787 Spc7 Spc7 kinetocho 94.6 3 6.6E-05 43.8 18.3 158 144-301 74-260 (312)
27 KOG0250 DNA repair protein RAD 94.5 1.3 2.9E-05 52.8 17.0 130 222-378 377-508 (1074)
28 PF07888 CALCOCO1: Calcium bin 94.4 2 4.3E-05 48.4 17.1 34 225-258 200-233 (546)
29 PF10168 Nup88: Nuclear pore c 94.4 1.5 3.3E-05 50.8 16.8 169 165-356 529-708 (717)
30 KOG0994 Extracellular matrix g 94.3 0.91 2E-05 54.5 15.0 84 230-313 1224-1307(1758)
31 COG4942 Membrane-bound metallo 94.3 1.1 2.5E-05 48.7 14.8 85 167-261 26-110 (420)
32 PF04156 IncA: IncA protein; 94.3 4 8.7E-05 38.8 17.2 66 180-251 85-150 (191)
33 PRK03918 chromosome segregatio 94.3 1.7 3.6E-05 50.4 17.2 8 161-168 133-140 (880)
34 PRK02224 chromosome segregatio 94.2 1.7 3.7E-05 50.5 17.2 7 370-376 754-760 (880)
35 PF00261 Tropomyosin: Tropomyo 94.2 2.2 4.8E-05 42.6 15.7 80 222-301 125-204 (237)
36 PHA02562 46 endonuclease subun 94.0 1.4 3.1E-05 48.3 15.2 24 181-204 186-209 (562)
37 PF13851 GAS: Growth-arrest sp 94.0 5.4 0.00012 39.3 17.6 27 177-203 28-54 (201)
38 TIGR02894 DNA_bind_RsfA transc 93.9 1 2.3E-05 43.2 12.1 18 176-193 54-71 (161)
39 COG2433 Uncharacterized conser 93.9 2.4 5.1E-05 48.2 16.5 89 216-304 421-512 (652)
40 COG1196 Smc Chromosome segrega 93.9 2.7 5.8E-05 51.1 18.4 57 143-200 148-217 (1163)
41 PF07888 CALCOCO1: Calcium bin 93.8 2.7 5.8E-05 47.3 16.9 32 215-246 204-235 (546)
42 PRK02224 chromosome segregatio 93.8 1.5 3.3E-05 50.9 15.7 28 275-302 594-621 (880)
43 PRK10884 SH3 domain-containing 93.8 1.6 3.4E-05 43.4 13.5 81 177-266 94-174 (206)
44 PF10146 zf-C4H2: Zinc finger- 93.7 2.5 5.3E-05 42.7 15.1 43 215-257 37-79 (230)
45 KOG4360 Uncharacterized coiled 93.7 2.7 5.9E-05 46.8 16.3 124 188-314 193-316 (596)
46 TIGR01843 type_I_hlyD type I s 93.7 2.5 5.4E-05 44.1 15.7 47 280-327 246-292 (423)
47 COG4026 Uncharacterized protei 93.6 0.41 9E-06 48.2 9.1 73 214-286 139-211 (290)
48 PRK04863 mukB cell division pr 93.5 2.7 5.8E-05 52.5 17.7 17 395-411 627-643 (1486)
49 PF10473 CENP-F_leu_zip: Leuci 93.5 6.1 0.00013 37.2 16.1 82 181-262 22-104 (140)
50 KOG0995 Centromere-associated 93.4 4.6 9.9E-05 45.6 17.7 16 263-278 343-358 (581)
51 COG4372 Uncharacterized protei 93.4 3.8 8.2E-05 44.5 16.3 32 227-258 147-178 (499)
52 PF08317 Spc7: Spc7 kinetochor 93.2 5.8 0.00013 41.5 17.4 29 175-203 148-176 (325)
53 TIGR01843 type_I_hlyD type I s 93.2 7.2 0.00016 40.7 18.2 22 179-200 84-105 (423)
54 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.2 6.6 0.00014 35.9 16.1 34 266-299 98-131 (132)
55 KOG0995 Centromere-associated 93.2 6.8 0.00015 44.3 18.5 30 176-205 259-288 (581)
56 PF12718 Tropomyosin_1: Tropom 93.0 6.5 0.00014 36.8 15.6 65 229-300 78-142 (143)
57 PF09789 DUF2353: Uncharacteri 92.8 2.7 5.8E-05 44.4 14.1 125 174-298 84-228 (319)
58 PF05266 DUF724: Protein of un 92.8 7.1 0.00015 38.3 16.2 56 235-290 128-183 (190)
59 KOG0999 Microtubule-associated 92.7 4.4 9.4E-05 45.7 16.1 63 218-280 108-184 (772)
60 PRK04778 septation ring format 92.7 2.8 6.1E-05 47.0 15.2 33 170-202 280-312 (569)
61 PF00261 Tropomyosin: Tropomyo 92.7 9.6 0.00021 38.1 17.4 83 217-299 127-209 (237)
62 TIGR01000 bacteriocin_acc bact 92.6 4.4 9.5E-05 44.1 16.0 27 178-204 174-200 (457)
63 KOG0243 Kinesin-like protein [ 92.6 5 0.00011 48.2 17.3 113 178-290 443-556 (1041)
64 PF11559 ADIP: Afadin- and alp 92.5 8.8 0.00019 35.5 16.4 6 295-300 141-146 (151)
65 PF00038 Filament: Intermediat 92.5 14 0.0003 37.8 19.3 75 221-298 213-287 (312)
66 KOG0977 Nuclear envelope prote 92.5 6.6 0.00014 44.3 17.4 20 142-161 65-84 (546)
67 TIGR03185 DNA_S_dndD DNA sulfu 92.4 3.8 8.3E-05 46.6 15.9 67 181-255 181-247 (650)
68 PRK04863 mukB cell division pr 92.4 3 6.5E-05 52.1 16.0 36 267-302 443-478 (1486)
69 KOG0999 Microtubule-associated 92.3 5.1 0.00011 45.2 15.9 98 215-319 154-277 (772)
70 PRK10884 SH3 domain-containing 92.2 3.2 7E-05 41.2 13.2 25 279-303 145-169 (206)
71 PF08614 ATG16: Autophagy prot 92.1 1.1 2.3E-05 43.5 9.6 24 178-201 76-99 (194)
72 KOG0964 Structural maintenance 92.0 5.5 0.00012 47.5 16.4 27 172-198 187-213 (1200)
73 PF06120 Phage_HK97_TLTM: Tail 91.9 5.7 0.00012 41.7 15.2 73 180-253 38-110 (301)
74 PF12325 TMF_TATA_bd: TATA ele 91.8 4.8 0.0001 36.9 12.9 32 175-206 15-46 (120)
75 PF15619 Lebercilin: Ciliary p 91.8 7.8 0.00017 38.2 15.2 66 227-292 78-144 (194)
76 PF12325 TMF_TATA_bd: TATA ele 91.8 10 0.00022 34.7 15.5 43 215-257 21-63 (120)
77 PRK04778 septation ring format 91.6 5.7 0.00012 44.7 15.9 67 222-288 360-426 (569)
78 PF15035 Rootletin: Ciliary ro 91.4 13 0.00028 36.3 16.2 97 175-271 15-132 (182)
79 KOG0933 Structural maintenance 91.2 12 0.00025 45.1 18.0 31 429-463 1053-1083(1174)
80 TIGR00606 rad50 rad50. This fa 91.2 10 0.00022 46.7 18.7 38 213-250 825-862 (1311)
81 KOG4673 Transcription factor T 91.2 17 0.00036 42.3 18.6 50 155-206 390-439 (961)
82 COG4985 ABC-type phosphate tra 91.1 6.3 0.00014 40.2 13.9 103 213-342 160-270 (289)
83 PF06156 DUF972: Protein of un 91.0 0.87 1.9E-05 40.9 7.1 15 304-319 81-95 (107)
84 PF00038 Filament: Intermediat 90.9 19 0.0004 36.8 17.7 34 267-300 104-137 (312)
85 PF10146 zf-C4H2: Zinc finger- 90.9 13 0.00028 37.6 16.0 62 229-290 37-98 (230)
86 KOG0964 Structural maintenance 90.8 6.4 0.00014 47.0 15.5 138 247-405 455-618 (1200)
87 PRK01156 chromosome segregatio 90.8 8.3 0.00018 45.2 16.8 34 268-301 411-444 (895)
88 PF08614 ATG16: Autophagy prot 90.7 6.1 0.00013 38.3 13.2 17 269-285 161-177 (194)
89 PF10481 CENP-F_N: Cenp-F N-te 90.6 13 0.00029 38.7 16.0 113 178-307 20-136 (307)
90 KOG1853 LIS1-interacting prote 90.6 11 0.00023 39.1 15.1 82 222-306 50-134 (333)
91 PF09726 Macoilin: Transmembra 90.6 5.3 0.00012 46.3 14.7 27 232-258 546-572 (697)
92 PF09755 DUF2046: Uncharacteri 90.5 14 0.00031 39.0 16.4 19 267-285 179-197 (310)
93 PRK01156 chromosome segregatio 90.5 9.7 0.00021 44.7 17.0 19 170-188 167-185 (895)
94 PRK09039 hypothetical protein; 90.5 12 0.00027 39.6 16.3 25 176-200 81-105 (343)
95 KOG0161 Myosin class II heavy 90.5 9.7 0.00021 48.8 17.6 15 396-410 1238-1252(1930)
96 KOG2391 Vacuolar sorting prote 90.4 28 0.00061 37.4 20.0 55 189-249 224-278 (365)
97 PF10498 IFT57: Intra-flagella 90.3 9.9 0.00022 40.8 15.5 46 214-259 249-294 (359)
98 TIGR00606 rad50 rad50. This fa 90.3 5.9 0.00013 48.8 15.6 6 320-325 1159-1164(1311)
99 PF12718 Tropomyosin_1: Tropom 90.2 16 0.00035 34.2 16.8 30 222-251 33-62 (143)
100 COG2433 Uncharacterized conser 90.0 5.6 0.00012 45.3 13.7 77 217-293 429-508 (652)
101 TIGR02680 conserved hypothetic 89.9 8.7 0.00019 47.7 16.6 34 446-479 608-641 (1353)
102 PF10212 TTKRSYEDQ: Predicted 89.7 10 0.00022 42.5 15.3 78 222-302 439-516 (518)
103 KOG2264 Exostosin EXT1L [Signa 89.7 2.9 6.3E-05 47.3 11.1 83 230-326 92-182 (907)
104 KOG1962 B-cell receptor-associ 89.5 5.1 0.00011 40.2 11.8 38 222-259 149-186 (216)
105 KOG0804 Cytoplasmic Zn-finger 89.5 16 0.00036 40.3 16.4 8 66-73 182-189 (493)
106 COG4372 Uncharacterized protei 89.5 20 0.00044 39.1 16.8 14 465-478 453-466 (499)
107 PF09726 Macoilin: Transmembra 89.4 19 0.00041 42.0 17.8 31 175-205 417-447 (697)
108 PF15285 BH3: Beclin-1 BH3 dom 89.3 0.15 3.4E-06 34.5 0.7 19 144-162 7-25 (25)
109 TIGR01010 BexC_CtrB_KpsE polys 89.1 32 0.00069 36.1 19.3 165 174-349 168-345 (362)
110 PF09789 DUF2353: Uncharacteri 89.1 25 0.00054 37.4 17.0 167 180-356 13-223 (319)
111 PF10186 Atg14: UV radiation r 89.1 26 0.00056 35.0 17.7 39 220-258 59-97 (302)
112 PF04012 PspA_IM30: PspA/IM30 89.0 24 0.00052 34.5 18.2 127 165-296 21-149 (221)
113 KOG0161 Myosin class II heavy 89.0 23 0.0005 45.6 19.3 34 233-266 952-985 (1930)
114 PF09755 DUF2046: Uncharacteri 88.8 32 0.00069 36.5 17.4 58 177-234 136-202 (310)
115 PF10168 Nup88: Nuclear pore c 88.7 30 0.00066 40.4 18.9 25 277-301 636-660 (717)
116 KOG2072 Translation initiation 88.7 14 0.0003 43.7 15.8 146 152-301 521-698 (988)
117 KOG0288 WD40 repeat protein Ti 88.7 13 0.00028 40.7 14.8 107 180-286 10-117 (459)
118 PRK09841 cryptic autophosphory 88.5 26 0.00056 40.7 18.3 119 172-301 263-398 (726)
119 PF05384 DegS: Sensor protein 88.3 25 0.00054 33.8 16.1 65 215-279 46-118 (159)
120 TIGR02977 phageshock_pspA phag 88.2 23 0.0005 35.0 15.3 45 151-197 3-52 (219)
121 PF09730 BicD: Microtubule-ass 88.1 27 0.00058 40.9 17.7 35 216-250 82-116 (717)
122 PF00769 ERM: Ezrin/radixin/mo 87.9 13 0.00028 37.7 13.6 38 222-259 59-96 (246)
123 COG4942 Membrane-bound metallo 87.7 10 0.00022 41.6 13.5 31 316-353 151-181 (420)
124 KOG0933 Structural maintenance 87.7 18 0.00039 43.6 16.1 21 181-201 785-805 (1174)
125 COG5185 HEC1 Protein involved 87.6 27 0.0006 39.0 16.5 27 142-173 153-179 (622)
126 TIGR03752 conj_TIGR03752 integ 87.5 7.3 0.00016 43.2 12.4 73 228-300 70-143 (472)
127 PF15070 GOLGA2L5: Putative go 87.5 20 0.00044 41.1 16.3 19 459-477 488-506 (617)
128 TIGR01069 mutS2 MutS2 family p 87.4 8 0.00017 45.3 13.4 20 21-40 295-318 (771)
129 PF06160 EzrA: Septation ring 87.3 20 0.00042 40.5 15.9 181 170-355 276-487 (560)
130 TIGR03007 pepcterm_ChnLen poly 87.3 32 0.00069 37.6 17.2 61 241-301 320-383 (498)
131 KOG0971 Microtubule-associated 87.2 77 0.0017 38.3 22.3 20 337-356 439-458 (1243)
132 KOG0977 Nuclear envelope prote 87.1 23 0.0005 40.1 16.1 20 181-200 111-130 (546)
133 TIGR03185 DNA_S_dndD DNA sulfu 87.0 40 0.00086 38.5 18.4 41 217-257 428-468 (650)
134 PRK00409 recombination and DNA 87.0 12 0.00025 44.1 14.4 21 20-40 299-323 (782)
135 TIGR02894 DNA_bind_RsfA transc 86.5 11 0.00025 36.3 11.6 32 226-257 99-130 (161)
136 KOG1029 Endocytic adaptor prot 86.5 7.6 0.00016 45.5 12.1 9 318-326 631-639 (1118)
137 TIGR01069 mutS2 MutS2 family p 86.5 9.4 0.0002 44.8 13.3 40 220-259 518-557 (771)
138 PF00769 ERM: Ezrin/radixin/mo 86.5 40 0.00086 34.2 16.9 78 220-297 43-120 (246)
139 KOG0980 Actin-binding protein 86.5 48 0.001 39.6 18.5 79 224-302 438-516 (980)
140 PF11932 DUF3450: Protein of u 86.2 24 0.00052 35.4 14.5 8 429-436 240-247 (251)
141 PF07106 TBPIP: Tat binding pr 86.2 20 0.00044 33.8 13.2 70 170-239 66-138 (169)
142 KOG0982 Centrosomal protein Nu 86.1 23 0.00051 39.0 14.9 29 275-303 362-390 (502)
143 PF05700 BCAS2: Breast carcino 86.0 5.4 0.00012 39.6 9.6 45 215-259 173-217 (221)
144 COG5185 HEC1 Protein involved 85.8 21 0.00045 39.9 14.5 58 221-278 334-394 (622)
145 PF05266 DUF724: Protein of un 85.6 39 0.00084 33.3 15.7 109 185-293 64-179 (190)
146 PF10267 Tmemb_cc2: Predicted 85.4 19 0.0004 39.4 13.9 31 175-205 211-241 (395)
147 TIGR00570 cdk7 CDK-activating 85.4 17 0.00038 38.4 13.3 13 165-177 26-38 (309)
148 PF05701 WEMBL: Weak chloropla 85.1 48 0.001 37.1 17.5 15 336-350 421-435 (522)
149 KOG4460 Nuclear pore complex, 85.1 60 0.0013 37.1 17.7 43 139-183 525-570 (741)
150 KOG1899 LAR transmembrane tyro 85.0 16 0.00034 42.1 13.4 22 151-172 83-105 (861)
151 PRK11519 tyrosine kinase; Prov 84.9 60 0.0013 37.7 18.7 33 268-300 365-397 (719)
152 TIGR01000 bacteriocin_acc bact 84.8 62 0.0014 35.2 17.8 26 275-300 238-263 (457)
153 PF09730 BicD: Microtubule-ass 84.8 36 0.00077 39.9 16.6 79 214-292 66-147 (717)
154 PF11559 ADIP: Afadin- and alp 84.7 33 0.00071 31.7 13.7 30 220-249 76-105 (151)
155 PF12329 TMF_DNA_bd: TATA elem 84.7 15 0.00033 30.7 10.3 23 230-252 18-40 (74)
156 PF06005 DUF904: Protein of un 84.5 23 0.0005 29.8 11.7 43 219-261 6-48 (72)
157 PF05667 DUF812: Protein of un 84.1 50 0.0011 37.9 17.2 95 242-348 423-517 (594)
158 PF04849 HAP1_N: HAP1 N-termin 84.0 44 0.00096 35.4 15.5 83 214-296 164-264 (306)
159 KOG0612 Rho-associated, coiled 84.0 27 0.00059 42.8 15.5 11 189-199 514-524 (1317)
160 TIGR02231 conserved hypothetic 83.9 18 0.00039 40.1 13.5 34 268-301 140-173 (525)
161 TIGR03319 YmdA_YtgF conserved 83.7 27 0.00058 39.2 14.7 14 309-322 208-221 (514)
162 KOG0804 Cytoplasmic Zn-finger 83.7 28 0.00061 38.6 14.3 15 282-296 430-444 (493)
163 PF05149 Flagellar_rod: Parafl 83.4 49 0.0011 34.8 15.5 114 216-350 51-164 (289)
164 PF11180 DUF2968: Protein of u 83.3 37 0.0008 33.7 13.7 75 222-303 110-184 (192)
165 PF06005 DUF904: Protein of un 83.3 26 0.00056 29.4 11.5 34 225-258 19-52 (72)
166 PRK09841 cryptic autophosphory 83.2 42 0.0009 39.0 16.5 25 225-249 305-329 (726)
167 PRK12704 phosphodiesterase; Pr 83.0 30 0.00064 38.9 14.7 12 309-320 214-225 (520)
168 TIGR02231 conserved hypothetic 83.0 13 0.00029 41.1 12.0 43 215-257 129-171 (525)
169 KOG0996 Structural maintenance 82.9 51 0.0011 40.5 17.0 22 384-405 617-640 (1293)
170 TIGR03752 conj_TIGR03752 integ 82.8 13 0.00029 41.2 11.7 8 399-406 248-255 (472)
171 PF15254 CCDC14: Coiled-coil d 82.8 38 0.00082 39.9 15.5 78 222-302 467-544 (861)
172 TIGR02680 conserved hypothetic 82.7 45 0.00098 41.6 17.4 17 178-194 232-248 (1353)
173 KOG4438 Centromere-associated 82.6 50 0.0011 36.5 15.6 150 177-356 136-288 (446)
174 PRK10361 DNA recombination pro 82.6 89 0.0019 35.0 18.2 29 222-250 90-118 (475)
175 PRK00409 recombination and DNA 82.3 26 0.00056 41.3 14.5 21 141-161 387-407 (782)
176 PF10234 Cluap1: Clusterin-ass 82.3 48 0.001 34.5 14.7 33 219-251 185-217 (267)
177 PF13851 GAS: Growth-arrest sp 82.2 54 0.0012 32.3 17.3 74 220-293 51-134 (201)
178 TIGR02338 gimC_beta prefoldin, 82.1 22 0.00047 31.6 10.8 36 220-255 70-105 (110)
179 KOG1937 Uncharacterized conser 82.1 85 0.0019 35.1 17.1 69 230-298 344-428 (521)
180 cd00632 Prefoldin_beta Prefold 82.0 23 0.00051 31.0 10.9 37 220-256 66-102 (105)
181 TIGR01005 eps_transp_fam exopo 82.0 81 0.0018 36.5 18.2 30 271-300 374-403 (754)
182 KOG4674 Uncharacterized conser 81.9 62 0.0013 41.6 17.9 74 178-251 131-205 (1822)
183 PRK00106 hypothetical protein; 81.8 49 0.0011 37.5 15.8 18 309-327 229-246 (535)
184 KOG0239 Kinesin (KAR3 subfamil 81.7 51 0.0011 38.4 16.2 62 222-283 232-293 (670)
185 KOG4360 Uncharacterized coiled 81.5 44 0.00096 37.7 14.9 72 215-286 231-302 (596)
186 PF12128 DUF3584: Protein of u 81.5 64 0.0014 39.8 17.9 10 439-448 1026-1035(1201)
187 PRK08032 fliD flagellar cappin 81.5 5.9 0.00013 43.5 8.4 51 235-288 410-460 (462)
188 PRK11281 hypothetical protein; 81.3 39 0.00085 41.5 15.8 27 178-204 82-108 (1113)
189 TIGR03017 EpsF chain length de 81.3 69 0.0015 34.3 16.3 19 177-195 255-273 (444)
190 KOG0240 Kinesin (SMY1 subfamil 81.3 1.1E+02 0.0024 35.2 18.6 65 223-287 413-484 (607)
191 PF10473 CENP-F_leu_zip: Leuci 81.2 50 0.0011 31.2 17.5 22 182-203 9-30 (140)
192 PF11414 Suppressor_APC: Adeno 81.2 23 0.00049 30.7 10.1 55 216-270 6-62 (84)
193 KOG0979 Structural maintenance 81.2 43 0.00092 40.5 15.4 16 453-468 563-578 (1072)
194 PF15066 CAGE1: Cancer-associa 80.9 70 0.0015 35.8 16.0 39 257-295 487-525 (527)
195 PRK13169 DNA replication intia 80.9 6 0.00013 35.8 6.9 15 304-319 78-92 (110)
196 KOG0243 Kinesin-like protein [ 80.9 88 0.0019 38.2 18.0 20 175-194 403-422 (1041)
197 KOG2077 JNK/SAPK-associated pr 80.9 26 0.00057 40.0 13.0 123 154-283 274-423 (832)
198 KOG4403 Cell surface glycoprot 80.8 34 0.00074 37.9 13.5 68 272-350 346-414 (575)
199 KOG0980 Actin-binding protein 80.7 82 0.0018 37.8 17.3 10 320-329 563-572 (980)
200 PF03961 DUF342: Protein of un 80.5 14 0.0003 40.3 10.9 88 162-249 320-407 (451)
201 PRK11519 tyrosine kinase; Prov 80.5 18 0.00039 41.8 12.3 115 174-293 265-397 (719)
202 PF14662 CCDC155: Coiled-coil 80.5 65 0.0014 32.1 18.2 40 218-257 75-114 (193)
203 PF05278 PEARLI-4: Arabidopsis 80.5 26 0.00055 36.5 12.0 153 143-302 93-264 (269)
204 PF01920 Prefoldin_2: Prefoldi 80.4 10 0.00022 32.3 8.0 76 180-255 16-100 (106)
205 TIGR03007 pepcterm_ChnLen poly 80.4 56 0.0012 35.7 15.5 28 176-203 161-188 (498)
206 cd07674 F-BAR_FCHO1 The F-BAR 80.3 71 0.0015 32.4 16.8 17 320-336 244-260 (261)
207 PF12128 DUF3584: Protein of u 80.3 64 0.0014 39.8 17.3 11 439-449 581-591 (1201)
208 KOG3647 Predicted coiled-coil 80.2 68 0.0015 33.7 14.8 32 143-174 53-84 (338)
209 PF02403 Seryl_tRNA_N: Seryl-t 80.1 24 0.00052 30.7 10.3 39 215-253 27-65 (108)
210 PF06160 EzrA: Septation ring 80.0 76 0.0016 35.9 16.7 153 144-302 165-335 (560)
211 PF10211 Ax_dynein_light: Axon 79.8 63 0.0014 31.6 14.2 67 226-298 122-188 (189)
212 PF07106 TBPIP: Tat binding pr 79.7 10 0.00023 35.7 8.5 30 221-250 76-105 (169)
213 PRK06798 fliD flagellar cappin 79.5 7.3 0.00016 42.7 8.3 54 232-288 380-433 (440)
214 COG4026 Uncharacterized protei 79.4 50 0.0011 33.8 13.3 11 151-161 74-84 (290)
215 TIGR00634 recN DNA repair prot 79.4 74 0.0016 35.8 16.3 93 216-313 307-402 (563)
216 PF05667 DUF812: Protein of un 78.7 52 0.0011 37.7 15.0 26 178-203 330-355 (594)
217 KOG3800 Predicted E3 ubiquitin 78.7 10 0.00023 39.7 8.6 15 164-178 22-36 (300)
218 COG1382 GimC Prefoldin, chaper 78.4 31 0.00068 31.8 10.7 26 178-203 15-40 (119)
219 COG3879 Uncharacterized protei 78.4 24 0.00053 36.2 11.0 50 278-329 137-186 (247)
220 PF03962 Mnd1: Mnd1 family; I 78.1 25 0.00054 34.4 10.7 29 222-250 67-95 (188)
221 PF14662 CCDC155: Coiled-coil 78.1 77 0.0017 31.6 17.0 43 215-257 86-128 (193)
222 KOG4673 Transcription factor T 77.9 81 0.0017 37.0 15.8 23 331-353 656-684 (961)
223 PF03961 DUF342: Protein of un 77.9 12 0.00026 40.8 9.4 76 223-299 333-408 (451)
224 PF09787 Golgin_A5: Golgin sub 77.8 1E+02 0.0022 34.5 16.6 18 179-196 224-241 (511)
225 smart00787 Spc7 Spc7 kinetocho 77.7 1E+02 0.0022 32.6 17.8 33 267-299 219-251 (312)
226 PRK03947 prefoldin subunit alp 77.5 35 0.00075 31.2 11.0 44 215-258 92-135 (140)
227 PF05701 WEMBL: Weak chloropla 77.5 1.1E+02 0.0023 34.4 16.8 37 264-300 405-441 (522)
228 KOG0982 Centrosomal protein Nu 77.4 81 0.0018 35.0 15.1 14 191-204 280-293 (502)
229 PF03962 Mnd1: Mnd1 family; I 77.3 38 0.00082 33.1 11.7 27 224-250 103-129 (188)
230 PRK10929 putative mechanosensi 77.2 1.2E+02 0.0025 37.5 18.0 16 333-348 261-276 (1109)
231 PF10234 Cluap1: Clusterin-ass 77.1 48 0.001 34.5 12.8 28 222-249 174-201 (267)
232 PRK15422 septal ring assembly 76.9 48 0.001 28.6 11.0 11 279-289 66-76 (79)
233 COG4477 EzrA Negative regulato 76.8 62 0.0013 36.8 14.4 105 242-355 379-490 (570)
234 COG1730 GIM5 Predicted prefold 76.8 51 0.0011 31.3 11.9 85 175-259 19-136 (145)
235 PF08826 DMPK_coil: DMPK coile 76.7 16 0.00034 29.9 7.4 43 215-257 16-58 (61)
236 PF05278 PEARLI-4: Arabidopsis 76.6 1E+02 0.0022 32.2 18.6 8 192-199 124-131 (269)
237 PF07111 HCR: Alpha helical co 76.5 1.5E+02 0.0033 34.8 17.6 35 265-299 241-275 (739)
238 PRK03947 prefoldin subunit alp 76.3 62 0.0013 29.5 13.0 21 183-203 6-26 (140)
239 KOG4572 Predicted DNA-binding 76.3 80 0.0017 37.8 15.3 55 258-312 994-1048(1424)
240 PF10174 Cast: RIM-binding pro 76.1 1.5E+02 0.0032 35.4 17.9 24 224-247 336-359 (775)
241 KOG0971 Microtubule-associated 76.1 75 0.0016 38.3 15.2 19 457-475 836-854 (1243)
242 PF15619 Lebercilin: Ciliary p 75.7 86 0.0019 30.9 17.0 66 226-294 120-185 (194)
243 KOG1029 Endocytic adaptor prot 75.4 85 0.0018 37.3 15.3 9 402-410 602-610 (1118)
244 PF08172 CASP_C: CASP C termin 75.3 31 0.00068 35.2 10.9 38 267-304 87-124 (248)
245 PF05010 TACC: Transforming ac 75.0 95 0.0021 31.1 17.6 31 220-250 72-102 (207)
246 PF05911 DUF869: Plant protein 75.0 1.1E+02 0.0024 36.4 16.4 19 178-196 26-44 (769)
247 KOG4643 Uncharacterized coiled 74.9 1.4E+02 0.0031 36.4 17.2 19 179-197 411-429 (1195)
248 PRK09343 prefoldin subunit bet 74.9 46 0.001 30.2 10.9 32 222-253 76-107 (121)
249 COG3074 Uncharacterized protei 74.5 53 0.0012 27.9 10.7 6 262-267 62-67 (79)
250 PF09744 Jnk-SapK_ap_N: JNK_SA 74.4 84 0.0018 30.2 13.0 55 220-274 85-139 (158)
251 TIGR01005 eps_transp_fam exopo 74.4 85 0.0018 36.3 15.5 19 327-345 420-439 (754)
252 COG1340 Uncharacterized archae 74.3 1.2E+02 0.0027 32.0 16.5 78 217-294 165-242 (294)
253 PRK10869 recombination and rep 74.2 1.6E+02 0.0035 33.3 17.7 77 232-313 318-397 (553)
254 PF15294 Leu_zip: Leucine zipp 74.0 79 0.0017 33.1 13.5 79 215-293 130-228 (278)
255 KOG0976 Rho/Rac1-interacting s 73.9 1.2E+02 0.0025 36.4 15.9 52 147-199 226-282 (1265)
256 PF15070 GOLGA2L5: Putative go 73.7 93 0.002 36.0 15.2 13 402-414 421-433 (617)
257 PF11180 DUF2968: Protein of u 73.1 1E+02 0.0023 30.7 14.6 56 223-278 125-180 (192)
258 PF10481 CENP-F_N: Cenp-F N-te 73.0 59 0.0013 34.1 12.1 27 274-300 89-115 (307)
259 COG1345 FliD Flagellar capping 72.9 12 0.00026 41.7 7.9 50 236-288 427-476 (483)
260 PF14197 Cep57_CLD_2: Centroso 72.9 54 0.0012 27.3 10.4 34 267-300 34-67 (69)
261 PF06248 Zw10: Centromere/kine 72.8 79 0.0017 35.7 14.4 32 172-203 10-46 (593)
262 COG4717 Uncharacterized conser 72.8 1.5E+02 0.0032 35.8 16.5 98 224-321 774-879 (984)
263 PRK13182 racA polar chromosome 72.7 32 0.0007 33.4 9.8 70 228-306 82-151 (175)
264 PF04012 PspA_IM30: PspA/IM30 72.5 99 0.0022 30.2 14.6 43 251-293 97-139 (221)
265 KOG4460 Nuclear pore complex, 72.4 97 0.0021 35.6 14.4 29 270-298 659-687 (741)
266 PLN02678 seryl-tRNA synthetase 72.1 34 0.00073 37.9 11.0 91 215-314 31-121 (448)
267 PF14712 Snapin_Pallidin: Snap 72.1 60 0.0013 27.5 12.3 77 223-300 13-91 (92)
268 TIGR03017 EpsF chain length de 72.1 1.1E+02 0.0023 32.9 14.6 32 174-205 169-200 (444)
269 PF05529 Bap31: B-cell recepto 72.1 23 0.0005 34.0 8.8 34 224-257 154-187 (192)
270 PF05911 DUF869: Plant protein 71.9 60 0.0013 38.4 13.4 17 337-353 734-750 (769)
271 PRK06800 fliH flagellar assemb 71.8 53 0.0012 32.7 11.0 10 348-357 137-146 (228)
272 COG0419 SbcC ATPase involved i 71.7 2E+02 0.0044 34.3 18.0 30 171-200 166-195 (908)
273 cd07593 BAR_MUG137_fungi The B 71.6 77 0.0017 31.8 12.5 42 227-271 145-186 (215)
274 PF13514 AAA_27: AAA domain 71.5 97 0.0021 37.8 15.6 24 330-353 1018-1041(1111)
275 PF10037 MRP-S27: Mitochondria 71.4 1.1E+02 0.0023 33.9 14.6 31 243-273 370-400 (429)
276 KOG2129 Uncharacterized conser 71.4 33 0.00071 37.9 10.3 66 178-243 210-279 (552)
277 PF10779 XhlA: Haemolysin XhlA 71.3 40 0.00086 27.8 8.8 53 214-266 3-55 (71)
278 PF12777 MT: Microtubule-bindi 71.3 15 0.00033 38.7 7.9 17 341-358 310-326 (344)
279 PRK07737 fliD flagellar cappin 71.2 16 0.00035 40.6 8.4 51 235-288 445-495 (501)
280 PF05557 MAD: Mitotic checkpoi 71.0 6.2 0.00013 45.5 5.3 125 175-299 398-536 (722)
281 PF13166 AAA_13: AAA domain 70.9 2E+02 0.0042 32.9 17.9 24 326-354 494-517 (712)
282 KOG0972 Huntingtin interacting 70.8 1E+02 0.0023 32.8 13.4 44 214-257 256-299 (384)
283 KOG3758 Uncharacterized conser 70.7 1.2E+02 0.0026 35.2 14.8 135 153-301 16-151 (655)
284 PF02388 FemAB: FemAB family; 70.6 13 0.00029 40.0 7.4 41 275-315 275-315 (406)
285 PF09304 Cortex-I_coil: Cortex 70.5 85 0.0018 28.6 15.3 24 222-245 49-72 (107)
286 PRK13729 conjugal transfer pil 70.5 14 0.0003 41.2 7.5 14 364-377 211-224 (475)
287 PRK06664 fliD flagellar hook-a 70.4 14 0.00029 42.8 7.8 55 232-289 601-655 (661)
288 KOG4302 Microtubule-associated 70.4 1.2E+02 0.0026 35.4 15.1 79 221-299 100-193 (660)
289 KOG1853 LIS1-interacting prote 70.3 1.4E+02 0.0031 31.1 17.1 24 229-252 96-119 (333)
290 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.3 87 0.0019 28.6 16.5 70 219-291 61-130 (132)
291 PRK11578 macrolide transporter 70.2 83 0.0018 33.0 13.1 43 279-322 157-199 (370)
292 TIGR02977 phageshock_pspA phag 70.1 1.2E+02 0.0026 30.0 14.6 51 245-295 99-149 (219)
293 cd00890 Prefoldin Prefoldin is 70.0 54 0.0012 28.9 10.0 35 220-254 90-124 (129)
294 PF14197 Cep57_CLD_2: Centroso 70.0 63 0.0014 26.9 10.0 6 280-285 54-59 (69)
295 TIGR02449 conserved hypothetic 69.6 40 0.00088 28.0 8.3 34 221-254 4-37 (65)
296 KOG1003 Actin filament-coating 69.6 1.3E+02 0.0028 30.2 16.6 70 232-301 103-172 (205)
297 PF09731 Mitofilin: Mitochondr 69.5 2E+02 0.0043 32.4 18.7 11 149-159 225-235 (582)
298 TIGR02473 flagell_FliJ flagell 69.5 83 0.0018 28.1 14.5 89 179-270 30-121 (141)
299 PF09728 Taxilin: Myosin-like 69.5 1.5E+02 0.0033 31.1 15.8 23 390-412 260-282 (309)
300 KOG1899 LAR transmembrane tyro 69.4 77 0.0017 36.8 13.0 61 181-243 130-193 (861)
301 COG4477 EzrA Negative regulato 69.4 2.1E+02 0.0046 32.7 16.5 27 174-200 283-309 (570)
302 PF15290 Syntaphilin: Golgi-lo 69.3 1.4E+02 0.003 31.5 13.9 75 222-305 106-182 (305)
303 KOG3119 Basic region leucine z 69.2 27 0.00059 35.9 9.0 55 215-269 206-260 (269)
304 cd07666 BAR_SNX7 The Bin/Amphi 69.1 1.4E+02 0.0031 30.6 17.7 113 170-298 118-231 (243)
305 KOG4809 Rab6 GTPase-interactin 69.0 1.5E+02 0.0033 34.0 15.0 19 463-481 602-620 (654)
306 PF05529 Bap31: B-cell recepto 69.0 35 0.00075 32.8 9.2 24 270-293 165-188 (192)
307 KOG2391 Vacuolar sorting prote 68.9 44 0.00096 35.9 10.5 8 26-33 66-74 (365)
308 PF12761 End3: Actin cytoskele 68.8 86 0.0019 31.3 11.9 22 220-241 99-120 (195)
309 PF10805 DUF2730: Protein of u 68.6 36 0.00078 30.3 8.5 32 268-299 67-98 (106)
310 PF15397 DUF4618: Domain of un 68.3 1.5E+02 0.0033 30.7 17.7 43 215-257 65-107 (258)
311 TIGR00634 recN DNA repair prot 68.2 1.3E+02 0.0029 33.8 14.8 13 191-203 190-202 (563)
312 KOG4674 Uncharacterized conser 68.2 1.5E+02 0.0032 38.4 16.3 40 162-202 45-85 (1822)
313 cd00584 Prefoldin_alpha Prefol 68.2 73 0.0016 28.5 10.6 27 177-203 14-40 (129)
314 PF09763 Sec3_C: Exocyst compl 68.1 95 0.0021 35.8 14.0 111 174-304 3-113 (701)
315 PF13514 AAA_27: AAA domain 68.0 2.4E+02 0.0053 34.5 17.9 27 178-204 745-771 (1111)
316 KOG0993 Rab5 GTPase effector R 67.9 69 0.0015 35.4 11.8 47 212-258 136-182 (542)
317 PRK00106 hypothetical protein; 67.8 2.3E+02 0.0049 32.4 18.2 12 229-240 106-117 (535)
318 PF09738 DUF2051: Double stran 67.5 1.3E+02 0.0028 31.8 13.6 22 395-416 222-243 (302)
319 PF02841 GBP_C: Guanylate-bind 67.5 1.1E+02 0.0024 31.5 13.1 31 171-201 150-184 (297)
320 COG3206 GumC Uncharacterized p 67.4 1.4E+02 0.0031 32.4 14.6 21 177-197 286-306 (458)
321 PF09731 Mitofilin: Mitochondr 67.0 2.2E+02 0.0048 32.0 17.2 20 281-300 372-391 (582)
322 KOG0288 WD40 repeat protein Ti 66.8 1.3E+02 0.0028 33.4 13.6 15 343-357 206-220 (459)
323 PF14817 HAUS5: HAUS augmin-li 66.8 1.3E+02 0.0028 35.0 14.4 49 226-274 81-129 (632)
324 TIGR03794 NHPM_micro_HlyD NHPM 66.8 1.9E+02 0.0041 31.1 17.6 48 280-328 227-274 (421)
325 KOG2991 Splicing regulator [RN 66.7 1.7E+02 0.0038 30.6 17.3 23 275-297 179-201 (330)
326 TIGR00414 serS seryl-tRNA synt 66.4 53 0.0012 35.8 11.0 36 216-251 29-64 (418)
327 KOG0994 Extracellular matrix g 66.4 2.5E+02 0.0055 35.2 16.8 18 143-160 1518-1535(1758)
328 PRK08724 fliD flagellar cappin 66.0 28 0.00061 40.4 9.1 51 234-287 620-670 (673)
329 PRK05431 seryl-tRNA synthetase 66.0 53 0.0011 35.9 10.8 36 216-251 27-62 (425)
330 PF05130 FlgN: FlgN protein; 65.8 84 0.0018 27.4 10.3 61 187-249 9-69 (143)
331 KOG3091 Nuclear pore complex, 65.6 88 0.0019 35.2 12.3 25 173-197 335-359 (508)
332 PF15290 Syntaphilin: Golgi-lo 65.6 1.2E+02 0.0025 32.1 12.5 83 212-296 56-140 (305)
333 PRK10698 phage shock protein P 65.5 1.5E+02 0.0033 29.6 17.1 52 245-296 99-150 (222)
334 PF10174 Cast: RIM-binding pro 65.3 3E+02 0.0064 32.9 17.6 37 263-299 469-505 (775)
335 TIGR03319 YmdA_YtgF conserved 65.3 2.4E+02 0.0052 31.8 18.0 36 229-264 92-127 (514)
336 KOG1103 Predicted coiled-coil 65.1 1.2E+02 0.0026 33.1 12.8 34 226-259 240-273 (561)
337 KOG0018 Structural maintenance 64.4 2.4E+02 0.0052 34.8 16.2 11 453-463 590-600 (1141)
338 KOG4571 Activating transcripti 64.3 25 0.00055 36.9 7.6 40 223-262 247-286 (294)
339 PF14257 DUF4349: Domain of un 64.3 43 0.00093 33.7 9.2 50 150-200 105-156 (262)
340 PRK10929 putative mechanosensi 64.2 3E+02 0.0065 34.2 17.5 42 269-310 282-323 (1109)
341 KOG0163 Myosin class VI heavy 64.1 2.1E+02 0.0045 34.4 15.2 10 194-203 904-913 (1259)
342 PF07058 Myosin_HC-like: Myosi 64.0 62 0.0013 34.5 10.3 20 178-197 2-21 (351)
343 PF09403 FadA: Adhesion protei 63.8 1.3E+02 0.0027 28.1 11.9 9 250-258 71-79 (126)
344 PF10211 Ax_dynein_light: Axon 63.8 1.5E+02 0.0033 29.0 17.4 55 220-274 123-178 (189)
345 PF14257 DUF4349: Domain of un 63.6 1.4E+02 0.0031 30.0 12.7 64 275-347 164-227 (262)
346 PRK06800 fliH flagellar assemb 63.6 93 0.002 31.1 10.8 19 256-274 95-113 (228)
347 PF07061 Swi5: Swi5; InterPro 63.5 26 0.00057 30.1 6.4 10 263-272 43-52 (83)
348 PF08647 BRE1: BRE1 E3 ubiquit 63.5 1E+02 0.0022 26.9 12.8 65 182-252 2-66 (96)
349 PRK10869 recombination and rep 63.3 1.8E+02 0.0039 33.0 14.7 11 433-443 502-512 (553)
350 TIGR02971 heterocyst_DevB ABC 63.1 1.8E+02 0.004 29.7 14.5 40 279-327 185-224 (327)
351 PRK10698 phage shock protein P 62.7 1.7E+02 0.0037 29.3 14.6 17 173-189 28-44 (222)
352 KOG4302 Microtubule-associated 62.7 78 0.0017 36.9 11.8 60 222-281 59-132 (660)
353 PF06632 XRCC4: DNA double-str 62.7 1.2E+02 0.0026 32.5 12.5 25 262-286 183-207 (342)
354 PF12999 PRKCSH-like: Glucosid 62.3 28 0.00061 34.1 7.1 14 163-176 97-110 (176)
355 PF02996 Prefoldin: Prefoldin 62.2 42 0.00092 29.4 7.7 80 178-257 5-117 (120)
356 KOG0946 ER-Golgi vesicle-tethe 62.0 1.3E+02 0.0028 36.0 13.2 57 220-276 660-716 (970)
357 KOG3564 GTPase-activating prot 61.8 58 0.0013 36.6 10.1 32 172-203 17-48 (604)
358 PF03980 Nnf1: Nnf1 ; InterPr 61.8 1.1E+02 0.0024 26.8 10.6 77 176-252 14-108 (109)
359 KOG1760 Molecular chaperone Pr 61.7 1E+02 0.0022 28.8 10.2 75 179-253 33-117 (131)
360 PF14932 HAUS-augmin3: HAUS au 61.7 83 0.0018 32.0 10.7 107 189-303 27-134 (256)
361 PF15188 CCDC-167: Coiled-coil 61.6 29 0.00063 30.2 6.3 24 280-303 43-66 (85)
362 PRK00888 ftsB cell division pr 61.5 26 0.00057 31.2 6.3 32 220-251 30-61 (105)
363 KOG0978 E3 ubiquitin ligase in 61.3 3.3E+02 0.0073 32.1 18.1 73 230-302 544-616 (698)
364 KOG4001 Axonemal dynein light 61.3 1.1E+02 0.0024 31.0 11.1 32 222-253 183-214 (259)
365 PF09798 LCD1: DNA damage chec 60.9 45 0.00098 38.7 9.5 59 229-293 2-60 (654)
366 PF03148 Tektin: Tektin family 60.9 2.4E+02 0.0053 30.4 16.9 29 274-302 325-353 (384)
367 KOG0249 LAR-interacting protei 60.8 1.9E+02 0.0041 34.3 14.1 38 221-258 220-257 (916)
368 PF06785 UPF0242: Uncharacteri 60.7 2.5E+02 0.0054 30.5 15.5 12 147-158 47-58 (401)
369 PF01496 V_ATPase_I: V-type AT 60.6 6 0.00013 45.9 2.7 24 288-311 154-177 (759)
370 KOG4005 Transcription factor X 60.6 89 0.0019 32.3 10.4 22 394-415 210-231 (292)
371 PRK10636 putative ABC transpor 60.5 51 0.0011 37.7 9.9 23 231-253 563-585 (638)
372 COG3883 Uncharacterized protei 60.4 2.2E+02 0.0048 29.7 18.1 27 178-204 33-59 (265)
373 KOG0962 DNA repair protein RAD 60.0 3.6E+02 0.0078 34.0 17.0 20 299-318 950-969 (1294)
374 PF13863 DUF4200: Domain of un 59.9 1.3E+02 0.0027 26.7 13.8 93 213-305 21-113 (126)
375 KOG0946 ER-Golgi vesicle-tethe 59.8 3.8E+02 0.0083 32.3 17.6 45 268-312 808-854 (970)
376 PRK05771 V-type ATP synthase s 59.8 36 0.00078 38.9 8.6 35 223-257 92-126 (646)
377 PF10224 DUF2205: Predicted co 59.7 71 0.0015 27.5 8.3 42 226-268 18-59 (80)
378 KOG4603 TBP-1 interacting prot 59.6 88 0.0019 30.9 9.8 36 217-252 79-114 (201)
379 PF02050 FliJ: Flagellar FliJ 59.4 1.1E+02 0.0023 25.8 14.3 85 178-266 14-101 (123)
380 COG3074 Uncharacterized protei 59.3 1.1E+02 0.0024 26.0 10.5 51 232-289 26-76 (79)
381 PF12777 MT: Microtubule-bindi 59.1 1.5E+02 0.0032 31.4 12.4 18 453-470 293-310 (344)
382 PF06120 Phage_HK97_TLTM: Tail 58.8 1.8E+02 0.004 30.8 12.8 28 174-201 86-113 (301)
383 PLN02320 seryl-tRNA synthetase 58.6 73 0.0016 35.9 10.4 30 396-437 353-382 (502)
384 PF15372 DUF4600: Domain of un 58.6 1.6E+02 0.0035 27.6 12.4 38 227-267 54-91 (129)
385 KOG4677 Golgi integral membran 58.5 1.5E+02 0.0033 33.3 12.4 103 216-328 308-422 (554)
386 KOG0978 E3 ubiquitin ligase in 58.5 3.7E+02 0.0081 31.8 17.6 83 222-304 543-625 (698)
387 KOG2196 Nuclear porin [Nuclear 58.4 2.3E+02 0.005 29.3 14.4 42 215-256 118-159 (254)
388 COG4717 Uncharacterized conser 58.2 4.2E+02 0.009 32.2 17.8 65 311-377 804-880 (984)
389 KOG0962 DNA repair protein RAD 58.1 2.7E+02 0.0059 35.0 15.6 18 299-316 940-957 (1294)
390 KOG4196 bZIP transcription fac 58.1 41 0.00089 31.6 7.0 30 222-251 79-108 (135)
391 PF07889 DUF1664: Protein of u 58.0 1.6E+02 0.0035 27.4 11.8 56 245-300 68-123 (126)
392 PF09403 FadA: Adhesion protei 57.9 91 0.002 29.0 9.3 20 279-298 88-107 (126)
393 KOG3850 Predicted membrane pro 57.9 2.6E+02 0.0057 30.8 13.9 20 338-357 393-412 (455)
394 PF14723 SSFA2_C: Sperm-specif 57.9 85 0.0018 30.9 9.4 20 184-203 106-125 (179)
395 PF11365 DUF3166: Protein of u 57.8 68 0.0015 28.6 8.1 89 212-303 3-92 (96)
396 PF01486 K-box: K-box region; 57.6 1.3E+02 0.0028 26.1 11.0 34 178-211 14-47 (100)
397 PLN02372 violaxanthin de-epoxi 57.5 1.3E+02 0.0029 33.3 11.8 23 249-271 407-429 (455)
398 COG1340 Uncharacterized archae 57.5 2.6E+02 0.0056 29.6 19.7 18 225-242 132-149 (294)
399 PF07716 bZIP_2: Basic region 57.3 39 0.00084 26.3 5.9 33 221-253 22-54 (54)
400 TIGR01730 RND_mfp RND family e 56.7 63 0.0014 32.4 8.8 19 282-300 111-129 (322)
401 PF05377 FlaC_arch: Flagella a 56.6 49 0.0011 26.7 6.3 37 220-256 3-39 (55)
402 KOG0796 Spliceosome subunit [R 56.5 2.3E+02 0.005 30.4 13.0 32 172-203 56-89 (319)
403 PF08286 Spc24: Spc24 subunit 56.4 3.9 8.5E-05 36.7 0.2 41 221-261 3-43 (118)
404 cd07611 BAR_Amphiphysin_I_II T 56.3 2.3E+02 0.0049 28.6 14.2 107 172-278 75-205 (211)
405 KOG3501 Molecular chaperone Pr 56.3 1.6E+02 0.0035 26.9 11.7 76 175-258 33-108 (114)
406 PF14817 HAUS5: HAUS augmin-li 56.0 3.5E+02 0.0077 31.5 15.5 23 317-339 471-493 (632)
407 KOG2196 Nuclear porin [Nuclear 56.0 2.5E+02 0.0055 29.1 15.5 29 275-303 221-249 (254)
408 PF13166 AAA_13: AAA domain 55.4 3.7E+02 0.008 30.7 19.1 10 179-188 332-341 (712)
409 KOG3091 Nuclear pore complex, 55.2 1.3E+02 0.0029 33.8 11.6 25 179-203 337-361 (508)
410 PF12761 End3: Actin cytoskele 54.4 94 0.002 31.0 9.3 22 275-296 162-183 (195)
411 PF04977 DivIC: Septum formati 54.2 40 0.00086 27.2 5.8 29 222-250 22-50 (80)
412 PRK11281 hypothetical protein; 53.3 1.4E+02 0.0031 36.8 12.4 16 335-350 283-298 (1113)
413 PF02994 Transposase_22: L1 tr 53.1 40 0.00088 36.2 7.2 17 397-413 292-308 (370)
414 COG3206 GumC Uncharacterized p 53.0 3.4E+02 0.0073 29.6 15.6 32 268-299 368-399 (458)
415 PRK14160 heat shock protein Gr 53.0 2.5E+02 0.0054 28.3 12.1 45 230-274 53-97 (211)
416 PRK10636 putative ABC transpor 52.9 79 0.0017 36.2 9.8 25 217-241 563-587 (638)
417 KOG2264 Exostosin EXT1L [Signa 52.8 1.3E+02 0.0027 34.9 10.9 42 217-258 93-134 (907)
418 TIGR01010 BexC_CtrB_KpsE polys 52.8 2E+02 0.0043 30.2 12.2 121 173-293 174-305 (362)
419 PF15254 CCDC14: Coiled-coil d 52.5 4.9E+02 0.011 31.3 17.5 83 222-304 439-525 (861)
420 PRK11578 macrolide transporter 52.4 2E+02 0.0043 30.2 12.1 27 274-300 159-185 (370)
421 PF05615 THOC7: Tho complex su 52.4 1.9E+02 0.004 26.4 11.0 69 178-252 41-109 (139)
422 PF14992 TMCO5: TMCO5 family 52.4 2.5E+02 0.0055 29.5 12.4 63 231-293 116-180 (280)
423 COG4985 ABC-type phosphate tra 52.3 1.1E+02 0.0024 31.6 9.5 15 175-189 160-174 (289)
424 PF12126 DUF3583: Protein of u 52.1 3E+02 0.0064 29.4 12.8 37 222-258 51-88 (324)
425 PF11684 DUF3280: Protein of u 51.8 12 0.00027 35.0 2.7 28 439-466 110-137 (140)
426 PRK05689 fliJ flagellar biosyn 51.7 1.9E+02 0.0041 26.4 15.4 90 181-273 35-127 (147)
427 TIGR00293 prefoldin, archaeal 51.1 1.8E+02 0.0039 25.9 10.7 26 178-203 15-40 (126)
428 PF13747 DUF4164: Domain of un 51.1 1.7E+02 0.0036 25.5 11.7 27 215-241 37-63 (89)
429 PF07851 TMPIT: TMPIT-like pro 50.8 1.9E+02 0.0042 31.0 11.5 26 179-204 7-32 (330)
430 KOG4438 Centromere-associated 50.8 3.3E+02 0.0071 30.4 13.4 63 240-302 175-238 (446)
431 smart00338 BRLZ basic region l 50.6 64 0.0014 25.7 6.3 29 229-257 31-59 (65)
432 PF00170 bZIP_1: bZIP transcri 50.5 87 0.0019 24.9 7.1 30 228-257 30-59 (64)
433 PLN02372 violaxanthin de-epoxi 50.4 3.2E+02 0.0069 30.5 13.2 44 177-232 362-405 (455)
434 PF07195 FliD_C: Flagellar hoo 49.9 55 0.0012 32.6 7.1 46 229-277 191-236 (239)
435 PRK12765 flagellar capping pro 49.6 78 0.0017 36.3 9.1 58 232-292 533-590 (595)
436 PF04977 DivIC: Septum formati 49.5 35 0.00075 27.6 4.7 31 227-257 20-50 (80)
437 PF10267 Tmemb_cc2: Predicted 49.5 4E+02 0.0086 29.4 14.2 19 338-356 344-362 (395)
438 PF02388 FemAB: FemAB family; 49.4 1.1E+02 0.0024 33.1 9.8 16 188-203 213-228 (406)
439 COG0172 SerS Seryl-tRNA synthe 49.1 2.2E+02 0.0047 31.7 12.0 93 215-315 27-119 (429)
440 PF01519 DUF16: Protein of unk 48.8 1.8E+02 0.0039 26.3 9.3 27 229-255 51-77 (102)
441 PF05557 MAD: Mitotic checkpoi 48.6 5.8 0.00013 45.8 0.0 22 181-202 310-331 (722)
442 PF04799 Fzo_mitofusin: fzo-li 48.6 1.6E+02 0.0035 28.8 9.8 20 242-261 124-143 (171)
443 PF10205 KLRAQ: Predicted coil 48.5 2.1E+02 0.0045 25.9 11.5 35 218-252 6-40 (102)
444 KOG0239 Kinesin (KAR3 subfamil 48.5 1.6E+02 0.0034 34.5 11.3 20 222-241 180-199 (670)
445 KOG4593 Mitotic checkpoint pro 48.4 5.3E+02 0.011 30.5 15.7 117 178-294 421-538 (716)
446 PF01920 Prefoldin_2: Prefoldi 48.2 1.7E+02 0.0037 24.8 10.9 20 280-299 76-95 (106)
447 KOG0018 Structural maintenance 47.9 4.4E+02 0.0096 32.7 14.8 35 167-202 724-763 (1141)
448 PF10458 Val_tRNA-synt_C: Valy 47.9 1.1E+02 0.0023 24.8 7.2 22 182-203 3-24 (66)
449 KOG0240 Kinesin (SMY1 subfamil 47.8 5E+02 0.011 30.1 14.7 30 218-247 422-451 (607)
450 COG3883 Uncharacterized protei 47.8 3.5E+02 0.0076 28.3 18.9 39 222-260 160-198 (265)
451 PF04899 MbeD_MobD: MbeD/MobD 47.6 1.7E+02 0.0037 24.6 8.7 36 266-301 28-63 (70)
452 TIGR03545 conserved hypothetic 47.3 2.8E+02 0.006 31.8 12.8 14 191-204 192-205 (555)
453 PRK10476 multidrug resistance 47.3 3.5E+02 0.0076 28.1 14.2 22 181-202 84-105 (346)
454 PRK10361 DNA recombination pro 47.2 4.7E+02 0.01 29.6 17.7 11 399-409 278-288 (475)
455 PF12795 MscS_porin: Mechanose 47.2 3E+02 0.0066 27.4 12.7 88 214-301 28-127 (240)
456 PF09340 NuA4: Histone acetylt 46.8 44 0.00095 28.5 5.0 33 231-266 2-34 (80)
457 TIGR03545 conserved hypothetic 46.7 3.4E+02 0.0074 31.0 13.4 25 439-463 497-521 (555)
458 KOG0249 LAR-interacting protei 46.6 2.9E+02 0.0064 32.8 12.7 40 223-262 215-254 (916)
459 PF05622 HOOK: HOOK protein; 46.5 6.5 0.00014 45.3 0.0 27 274-300 392-418 (713)
460 PF05010 TACC: Transforming ac 46.5 3.2E+02 0.0069 27.4 17.9 32 264-295 159-190 (207)
461 PF07303 Occludin_ELL: Occludi 46.4 1.9E+02 0.0042 25.6 9.2 47 225-272 23-69 (101)
462 PF03245 Phage_lysis: Bacterio 46.3 1.6E+02 0.0034 27.0 8.9 39 238-276 14-52 (125)
463 PF08581 Tup_N: Tup N-terminal 46.2 1.9E+02 0.0041 24.8 11.7 68 177-260 5-72 (79)
464 KOG1265 Phospholipase C [Lipid 46.2 6.5E+02 0.014 31.0 15.5 14 222-235 1087-1100(1189)
465 KOG0963 Transcription factor/C 46.1 5.4E+02 0.012 30.0 15.2 22 182-203 248-269 (629)
466 PF12329 TMF_DNA_bd: TATA elem 46.1 1.8E+02 0.0039 24.4 10.7 26 228-253 37-62 (74)
467 COG1842 PspA Phage shock prote 45.9 3.4E+02 0.0073 27.5 14.6 54 233-293 94-147 (225)
468 KOG3595 Dyneins, heavy chain [ 45.8 6.1E+02 0.013 32.2 16.5 29 175-203 699-727 (1395)
469 PF04740 LXG: LXG domain of WX 45.5 2.8E+02 0.006 26.5 18.0 45 169-213 54-98 (204)
470 PF06008 Laminin_I: Laminin Do 45.0 3.4E+02 0.0074 27.4 15.6 29 262-290 181-209 (264)
471 PRK10246 exonuclease subunit S 44.9 6.7E+02 0.015 30.7 18.3 29 263-291 294-322 (1047)
472 PF14362 DUF4407: Domain of un 44.9 2.4E+02 0.0052 28.9 11.1 17 273-289 196-212 (301)
473 COG3334 Uncharacterized conser 44.8 2.5E+02 0.0053 28.1 10.5 39 223-261 69-107 (192)
474 PF14282 FlxA: FlxA-like prote 44.7 2.3E+02 0.0049 25.2 9.7 17 175-191 18-34 (106)
475 PF15188 CCDC-167: Coiled-coil 44.7 1.2E+02 0.0026 26.5 7.3 23 182-204 4-26 (85)
476 PF12018 DUF3508: Domain of un 44.6 3.8E+02 0.0082 27.7 12.5 30 175-204 8-37 (281)
477 PLN02678 seryl-tRNA synthetase 44.5 1.7E+02 0.0037 32.6 10.4 25 400-436 301-325 (448)
478 PRK14127 cell division protein 44.4 83 0.0018 28.6 6.6 53 213-265 33-102 (109)
479 KOG2412 Nuclear-export-signal 44.3 3.6E+02 0.0077 31.1 12.7 12 428-439 435-446 (591)
480 PF04124 Dor1: Dor1-like famil 44.3 4E+02 0.0087 28.0 14.3 92 209-300 6-108 (338)
481 PF13815 Dzip-like_N: Iguana/D 44.1 72 0.0016 28.7 6.3 43 213-255 76-118 (118)
482 TIGR03794 NHPM_micro_HlyD NHPM 44.0 4.4E+02 0.0095 28.3 14.5 107 178-297 141-251 (421)
483 PF08172 CASP_C: CASP C termin 43.7 3.8E+02 0.0082 27.5 13.1 82 213-294 2-135 (248)
484 COG0497 RecN ATPase involved i 43.5 5.7E+02 0.012 29.5 16.6 142 177-323 267-410 (557)
485 PF07851 TMPIT: TMPIT-like pro 43.5 2.7E+02 0.0058 30.0 11.3 73 228-300 1-81 (330)
486 PF08647 BRE1: BRE1 E3 ubiquit 43.4 2.2E+02 0.0048 24.8 11.6 79 222-300 1-79 (96)
487 PF15066 CAGE1: Cancer-associa 43.3 5.4E+02 0.012 29.2 16.7 132 171-302 336-475 (527)
488 KOG4661 Hsp27-ERE-TATA-binding 43.2 2.6E+02 0.0057 32.4 11.5 102 186-288 599-703 (940)
489 KOG1103 Predicted coiled-coil 43.0 4.9E+02 0.011 28.6 14.3 131 144-285 56-186 (561)
490 PF05008 V-SNARE: Vesicle tran 42.9 1.6E+02 0.0035 24.0 7.8 58 227-290 21-78 (79)
491 COG4467 Regulator of replicati 42.8 48 0.001 30.3 4.8 87 226-318 3-95 (114)
492 PF03954 Lectin_N: Hepatic lec 42.8 1.6E+02 0.0034 28.0 8.4 76 213-291 58-137 (138)
493 smart00502 BBC B-Box C-termina 42.7 2.1E+02 0.0046 24.3 13.2 84 213-302 10-94 (127)
494 PLN03086 PRLI-interacting fact 42.6 2.7E+02 0.0059 32.0 11.8 89 221-322 4-133 (567)
495 PF11068 YlqD: YlqD protein; 42.4 2.9E+02 0.0063 25.8 11.1 65 223-287 19-88 (131)
496 TIGR00414 serS seryl-tRNA synt 42.4 1.2E+02 0.0027 33.0 8.9 62 214-275 41-106 (418)
497 KOG3478 Prefoldin subunit 6, K 42.4 2.8E+02 0.0061 25.6 12.9 102 178-283 7-114 (120)
498 PF10498 IFT57: Intra-flagella 42.3 4.8E+02 0.01 28.3 14.2 119 174-297 200-318 (359)
499 PF09738 DUF2051: Double stran 42.2 4.4E+02 0.0095 27.9 12.6 82 219-300 79-160 (302)
500 PHA03161 hypothetical protein; 42.0 89 0.0019 30.0 6.7 87 230-332 53-146 (150)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-106 Score=831.45 Aligned_cols=432 Identities=52% Similarity=0.854 Sum_probs=401.8
Q ss_pred EeecccchhhccccccCCCCCCccccccccccccCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCCccceE
Q 010177 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (516)
Q Consensus 33 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~s~vvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~v 111 (516)
++|+|+|..+++..|.++--.+.+.|+..++.+..+|+.+++|+|.+.+ ++.+.|+++|++.. +++. ++.++.+|||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999965 89999999999887 4544 7999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 010177 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (516)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E 191 (516)
+.+...+..+....+-++...+.+++.+.+..++++++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988776665555556666666667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010177 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (516)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~ 271 (516)
+++|++|+++|+++..+ .+++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+
T Consensus 159 ~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987643 37889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 010177 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 351 (516)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~t 351 (516)
++++.++++++++|++|+++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++
T Consensus 238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~ 317 (447)
T KOG2751|consen 238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT 317 (447)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeeeecCCCceEEecCC---ceeeccc--CCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 010177 352 MCQYFRPKFPYRIKIIPMGSYPRIMDSNN---NTYELFG--PVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 426 (516)
Q Consensus 352 la~~l~~~f~~~YkLvPmGS~SkI~~~~~---~~~eLyg--~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~ 426 (516)
|++++|++|. +|+||||||+|+|++... ..+++|+ +.+|||++|||+||+|||+||+||+++++++++
T Consensus 318 l~~kig~~~~-~y~lvp~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~------ 390 (447)
T KOG2751|consen 318 LANKIGLNFV-RYRLVPMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDT------ 390 (447)
T ss_pred HHHhcCcccc-eeeeecccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCc------
Confidence 9999999998 999999999999987543 4567774 458999999999999999999999999998764
Q ss_pred CCCCCCceeeeCCcccee----eEEecCCCCchHhHHHHHHHHhHHHHHHHHhh
Q 010177 427 DKCFKLPYKIENDKVENY----SITQSFNKQENWTKALKYTLCNLKWALFWFVG 476 (516)
Q Consensus 427 ~~~~~LPY~I~kDkIgg~----SIkl~~n~~e~WTkAlK~lLtNlKwlLawv~~ 476 (516)
.+.|||.|++|+|+|. +|++.||++++||+||||||||+||++|||+.
T Consensus 391 --~~~lPy~ie~d~i~d~~~~y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss 442 (447)
T KOG2751|consen 391 --SFNLPYDIEKDKLNDPSSSYSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS 442 (447)
T ss_pred --ccCCcchhhcccccCCccceeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence 5999999999999986 69999999999999999999999999999984
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=1.1e-96 Score=751.51 Aligned_cols=304 Identities=46% Similarity=0.854 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 168 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
|||.||++.|+++|+.+++++++|+++|..||++++.+.....+.+++.+++.+|++||+++.++|++||++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853322223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010177 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (516)
Q Consensus 248 ~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (516)
.+++.+..+++++|++||+++|.+++++.+++++++++++||+++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecC----CceeecccCC-----CCccccchh
Q 010177 328 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELFGPV-----NLFWSTRYD 398 (516)
Q Consensus 328 lp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~~~----~~~~eLyg~~-----~lf~~~kFD 398 (516)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++.. +.+|+|||++ ++|++++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999999 99999999999999875 5789999886 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchHhHHHHHHHHhHHHHHHHHhhCC
Q 010177 399 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 478 (516)
Q Consensus 399 ~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~kDkIgg~SIkl~~n~~e~WTkAlK~lLtNlKwlLawv~~~t 478 (516)
.||+|||+||+||++|+.+.|+. .++|||+|++|||||.||++.||++++||+|||||||||||+|||++.++
T Consensus 240 ~am~~~L~~~~q~~~~~~~~~~~-------~~~lPy~i~~~~I~~~si~~~~~~~~~WT~AlK~lLtnlKw~l~~~s~~~ 312 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEFVEKRDPQ-------SFELPYKIDKDKIGGVSIKLQFNSEEEWTKALKYLLTNLKWLLAWVSSQL 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------SS-ECTTEECTCES-STTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-------ccccceeccCCccCCeeeeecCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987642 59999999999999999999999999999999999999999999999875
Q ss_pred C
Q 010177 479 N 479 (516)
Q Consensus 479 ~ 479 (516)
.
T Consensus 313 ~ 313 (314)
T PF04111_consen 313 S 313 (314)
T ss_dssp -
T ss_pred c
Confidence 4
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.44 E-value=7.2e-11 Score=117.27 Aligned_cols=244 Identities=18% Similarity=0.216 Sum_probs=139.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~--~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
..+|..|+..=+-.++.++.++..+.+....-++.+-.... .......+..+..+++.....+..+++.+.++.++..
T Consensus 11 ~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 11 RFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred CeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999888876654432100 0001122223333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCceeeee---------
Q 010177 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH--------- 313 (516)
Q Consensus 245 ~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk--LrktNV~Nd~F~I~h--------- 313 (516)
+++.++..+.......-..+..........+.+..++......++.....++.. -+...-+...|+|..
T Consensus 91 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~ 170 (302)
T PF10186_consen 91 ERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPSD 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCCC
Confidence 444444333333222111222222222233333333333333333332222221 112223456899932
Q ss_pred --cCCeeeeccccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEec---CCceeeccc
Q 010177 314 --DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELFG 387 (516)
Q Consensus 314 --dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~~---~~~~~eLyg 387 (516)
.+.|. |.|++|=...+ ...+=.+|+||+|+++.|+..||.+|++.. .|.+.|+||+|.|.+. ....++.+.
T Consensus 171 ~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~L--py~i~~~gs~s~i~d~~~~~~~~~~~~~ 247 (302)
T PF10186_consen 171 SSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPL--PYPITPSGSRSTIIDFSPSIDRPLPSLS 247 (302)
T ss_pred CCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcccCccccchhhcccccCCcchhhh
Confidence 35665 99998765532 345668999999999999999999998776 6889999999999771 111222111
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHH
Q 010177 388 PVNLFWSTRYDKAMTLFLSCLKDFAE 413 (516)
Q Consensus 388 ~~~lf~~~kFD~AM~afL~cl~q~~e 413 (516)
..+--...+|..|+..+-.-+.|++.
T Consensus 248 ~~~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 248 YESGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 11111246899999999988888875
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=123.18 Aligned_cols=318 Identities=13% Similarity=0.037 Sum_probs=180.2
Q ss_pred CCCCccceEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHH
Q 010177 103 GKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLD 182 (516)
Q Consensus 103 ~~~~~~S~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld 182 (516)
+..|.|+++.++.. .+++++-+..+..+.+.....-.....++....+-...|+-.++++.+|||.|..|...+...+-
T Consensus 36 ~~~~~~~~~p~~~~-~~~~~~~t~~~~a~~~~~~~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~ 114 (447)
T KOG2751|consen 36 RMDISELVLPLHKP-PQSQGGPTRPRGASSGDATSGKTPQESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSA 114 (447)
T ss_pred ccchhhccCCCCCC-ccccCCCccCccccCccccCCcchhhccceecccCcccccccccccccccccccchhhhhHHHHH
Confidence 45556666666554 23333222222111122111112234456666777788899999999999999999998877544
Q ss_pred HHHHHHHHHHHHHHH----------HHHHH----hccccccCCHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 010177 183 KEVDDVTRDIEAYEA----------CLQRL----EGEARDVLSEAD-FLKEKLKIEE-----EERKLEAAIEETEKQNAE 242 (516)
Q Consensus 183 ~qle~~~~E~d~Y~~----------fL~~L----~~~~~~~~see~-l~~e~~~Le~-----EE~~L~~eL~~LE~e~~~ 242 (516)
+=...+....-.|.. |.+.| ..+......+-+ .++-++.||+ ++..+..|++++..|..+
T Consensus 115 ~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~ 194 (447)
T KOG2751|consen 115 TINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEER 194 (447)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH
Confidence 333322222212211 11111 111100000000 0111112221 344455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee------eeecCC
Q 010177 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHDGE 316 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~------I~hdG~ 316 (516)
+-+++++++++...++.++.+. +. .-++...+.++|.+-|. |-|+|.
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~--------------~~-------------~~~~~~e~~~~~~~ey~~~~~q~~~~~de 247 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKEL--------------EF-------------KAERLNEEEDQYWREYNNFQRQLIEHQDE 247 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HH-------------HHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 5555555555555544433211 11 11222223333333333 567899
Q ss_pred eeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecCC----------------
Q 010177 317 FGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNN---------------- 380 (516)
Q Consensus 317 fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~~~~---------------- 380 (516)
..+|++.|.|+++...+-|.+++++||-.+.+.-.++.+.|+... +|..+|.|..+-+.....
T Consensus 248 l~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG-~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~ 326 (447)
T KOG2751|consen 248 LDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLG-RLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNF 326 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceec-cccCCCcCHHHHHHHhhhHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999977766 888999887765543211
Q ss_pred ceeec--ccCCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchHhH
Q 010177 381 NTYEL--FGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTK 458 (516)
Q Consensus 381 ~~~eL--yg~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~kDkIgg~SIkl~~n~~e~WTk 458 (516)
..|.| ||+.. |++.++ ..+||.-..=--||..+... -..-+
T Consensus 327 ~~y~lvp~GshS-----------------------yI~~~~----------~~~~~el~l~~sgg~~~f~~----tkfD~ 369 (447)
T KOG2751|consen 327 VRYRLVPMGSHS-----------------------YIKKRM----------VNLPYELPLFQSGGLKFFWS----TKFDK 369 (447)
T ss_pred ceeeeecccchh-----------------------HHHHhc----------cCCCccchhhcCCCceeeec----cccCH
Confidence 12222 22222 333222 23666555444566666542 25668
Q ss_pred HHHHHHHhHHHHHHHHh-hCCCcCCcccC
Q 010177 459 ALKYTLCNLKWALFWFV-GNTNFQPVSAM 486 (516)
Q Consensus 459 AlK~lLtNlKwlLawv~-~~t~~~~~~~~ 486 (516)
||.-.|-.|+.+.-++. +.++|.++-++
T Consensus 370 amvafLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 370 AMVAFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcchh
Confidence 99999999999988887 77888876666
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.63 E-value=6.9e-06 Score=86.00 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---Cceeeee
Q 010177 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWH 313 (516)
Q Consensus 237 E~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~N---d~F~I~h 313 (516)
+++.+++.++...++.-...|+..+.++-...-.++.++.++.+.+-++. ..++++.-- ++|.|..
T Consensus 123 ~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~-----------a~re~fL~~~~~~~~~irq 191 (377)
T KOG2896|consen 123 QRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELV-----------AKRELFLEQRIQDTFKIRQ 191 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHhhHhHHHhhhhhhhc
Confidence 33333443333444444444555555555555556666555444444443 334443332 6788887
Q ss_pred cC-Ce--------------eeeccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEe
Q 010177 314 DG-EF--------------GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD 377 (516)
Q Consensus 314 dG-~f--------------GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~ 377 (516)
+| +. -||-|++|--.++..- +=.|+-||+|.++.|+++||.+|.+. ++|.|++-||.|+|.|
T Consensus 192 ~~~~~s~i~~l~~~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~p--LRYPIl~~~Sks~I~D 269 (377)
T KOG2896|consen 192 DGSPLSKILPLQFSYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVP--LRYPILLAGSKSYIRD 269 (377)
T ss_pred cCcchheeecCCcccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhccc--cccccccccccceecc
Confidence 76 22 3666666655544222 35689999999999999999999554 4799999999999987
Q ss_pred cCCc------eeecccCCCCccccchhHHHHHHHHHHHHHHH
Q 010177 378 SNNN------TYELFGPVNLFWSTRYDKAMTLFLSCLKDFAE 413 (516)
Q Consensus 378 ~~~~------~~eLyg~~~lf~~~kFD~AM~afL~cl~q~~e 413 (516)
.-+. .+++|.-... ..+|+.||-.+-.=+.|+..
T Consensus 270 ~i~~~~~ttr~fply~k~~~--~e~f~~glylL~qNiaqlr~ 309 (377)
T KOG2896|consen 270 YIPDIETTTREFPLYTKSQE--IEQFEYGLYLLNQNIAQLRY 309 (377)
T ss_pred cCCccccccccccCccccch--HHHHHHHHHHHhccHHHHHH
Confidence 5322 2555632110 34678887766666666543
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.53 E-value=0.029 Score=58.53 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (516)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~ 268 (516)
..+.+.+..-++.++.+ ++.+.+++.+||.|..++.++|.+++.+.++++++......+...++.+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666543 356778888999999999999999999988888877777776666665555555666
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHH----HHHH-hhcccCCCc
Q 010177 269 NNFQFQLIAHQEERDAIS-----------------------------------SKIEVSQAH----LELL-KRTNVLNDA 308 (516)
Q Consensus 269 N~~q~qL~~~~ee~~sl~-----------------------------------~q~~~a~~q----LdkL-rktNV~Nd~ 308 (516)
..+..+.....++++.|. +.+..|--| |..| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 666666555555555443 112222222 2222 344443345
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChHHHHHHHHHHHHHHHHHHhhcC---C-CCCCceeeeecCC
Q 010177 309 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 371 (516)
Q Consensus 309 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~~l~---~-~f~~~YkLvPmGS 371 (516)
|.|---|.|-+|=-+.-+. ..+ ..-.+...|.|+--.+-.|.-++..+. . .|.+-|++.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 6666667776665554211 011 124688999999888888888877664 1 233345452
Q ss_pred CceEEecCCceeecccCCCCccccchhHHHHHHHHHHHHHHHHHhcc
Q 010177 372 YPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 418 (516)
Q Consensus 372 ~SkI~~~~~~~~eLyg~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~ 418 (516)
--+|-+ .++-+. +-...++-+||+-+|..|+-+..|+.++
T Consensus 272 ~~~I~~---~si~~~----~~~~~~WT~AlK~lLtnlKw~l~~~s~~ 311 (314)
T PF04111_consen 272 KDKIGG---VSIKLQ----FNSEEEWTKALKYLLTNLKWLLAWVSSQ 311 (314)
T ss_dssp TTEECT---CES-ST----TS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeeec----CCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334422 222111 1124588999999999999999988753
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.89 E-value=0.083 Score=53.46 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
.|+.+|.+.+.+...++.|..+|++++.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e 39 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAE 39 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46677888888877777777777777644
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.84 E-value=0.061 Score=63.51 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 218 e~~~Le~EE-~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
.+..++++. +.+..++.+.|.+.+.|..|.++++.....|.++++.+-.++..-+.++...+.+...+..++++.+.+|
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 4555566677777777777777777777777777777777777777777777777788889999999999
Q ss_pred HHHhhcc
Q 010177 297 ELLKRTN 303 (516)
Q Consensus 297 dkLrktN 303 (516)
..|++++
T Consensus 460 ~~lk~~k 466 (1074)
T KOG0250|consen 460 KDLKKTK 466 (1074)
T ss_pred HHHHhcc
Confidence 9999875
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.13 E-value=0.16 Score=59.63 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
.++.+++++...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.
T Consensus 434 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~ 501 (1164)
T TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555445544445566666666666666666655555555544444333
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=95.86 E-value=0.39 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~~ee~~sl 285 (516)
.++..++.++.++..++.+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444433
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.81 E-value=0.55 Score=44.71 Aligned_cols=96 Identities=20% Similarity=0.325 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.+..+++++++.++........+..++.... ...+.+...+++...+....+.+.++..++.+++.+.+.+...
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 162 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQ------ELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444432211 1112233344444444445555555555554444444455555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 010177 257 FKELEERYWQEFNNFQFQLIAH 278 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~ 278 (516)
+...-++.+..++.++..+.+.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444555555554444433
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.80 E-value=0.55 Score=47.66 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA- 294 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~- 294 (516)
..|+..++.....|..+|.++..+.+.+..++..+..+ +..+|..+-.....+...+....++..++..+.+....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~---~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER---LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555544444433 33445555555555555555555555555444444433
Q ss_pred -------HHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 010177 295 -------HLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 328 (516)
Q Consensus 295 -------qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrl 328 (516)
..+++++.+ -+-..+.|+|=|=|..
T Consensus 172 l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~GC 203 (239)
T COG1579 172 LDPELLSEYERIRKNK---------KGVGVVPLEGRVCGGC 203 (239)
T ss_pred cCHHHHHHHHHHHhcC---------CCceEEeecCCcccCC
Confidence 345555532 1225677887776653
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.76 E-value=0.48 Score=55.81 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.9
Q ss_pred ccchhHHHHHHHH
Q 010177 394 STRYDKAMTLFLS 406 (516)
Q Consensus 394 ~~kFD~AM~afL~ 406 (516)
..+|..|+.+.|.
T Consensus 534 ~~~y~~Aie~~lg 546 (1164)
T TIGR02169 534 GERYATAIEVAAG 546 (1164)
T ss_pred CHHHHHHHHHHhh
Confidence 4688888888775
No 14
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.67 E-value=0.73 Score=48.30 Aligned_cols=158 Identities=11% Similarity=0.176 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHhhcCCcccCCcchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 010177 145 FHSTITVLKRAFEIATSQTQVEQPLCLE--------------CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL 210 (516)
Q Consensus 145 ls~~i~~l~~lFdILSs~s~IDhPLC~e--------------C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~ 210 (516)
|.|.+..-..+.-|.|+-.+-.- -+.. +...-++.|++++..++.|....+.-..+|..++....
T Consensus 116 LrHeL~~kdeLL~~ys~~~ee~~-~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 116 LRHELSMKDELLQIYSNDDEESE-PESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHhcCcHhhhcc-cccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 44555555666666664332111 1222 23345788999999999999888887777765432110
Q ss_pred CHH-----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHH
Q 010177 211 SEA-----DFLKEK-------LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY-------WQEFNNF 271 (516)
Q Consensus 211 see-----~l~~e~-------~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~-------W~e~N~~ 271 (516)
..+ ++.+++ ..|.+|..+...+...-+.|...|-+++.+++.+.+.+-.+-++. -..-+.+
T Consensus 195 ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 195 EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 000 111111 223333333333333333444444444444444433332222212 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
+.++.++++.-....+-+.-++.+|..||+.|
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 55566666666666666777899999999876
No 15
>PRK11637 AmiB activator; Provisional
Probab=95.63 E-value=0.25 Score=53.19 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|.+++.+..+++++|..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777777777666666554332 1233444444444455555555555555555555555554444443
Q ss_pred H
Q 010177 259 E 259 (516)
Q Consensus 259 ~ 259 (516)
.
T Consensus 117 ~ 117 (428)
T PRK11637 117 Q 117 (428)
T ss_pred H
Confidence 3
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.61 E-value=0.28 Score=53.69 Aligned_cols=33 Identities=12% Similarity=0.442 Sum_probs=14.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
+..|..|...+-+. ..++..++.+++.+..-++
T Consensus 284 ~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~ 316 (562)
T PHA02562 284 GGVCPTCTQQISEG-PDRITKIKDKLKELQHSLE 316 (562)
T ss_pred CCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 55666665555333 3333333333333333333
No 17
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.60 E-value=1.1 Score=44.83 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=20.2
Q ss_pred hhcccCCCceeeeecCCeeeeccccCCCC
Q 010177 300 KRTNVLNDAFPIWHDGEFGTINNFRLGRL 328 (516)
Q Consensus 300 rktNV~Nd~F~I~hdG~fGTINGlRLGrl 328 (516)
+...+|..+..| ||.=-+.+=|||||+
T Consensus 166 ~~i~~~~~~i~~--dG~~~~V~~LrlGr~ 192 (251)
T PF11932_consen 166 RTIEVYQGTITL--DGEERQVDFLRLGRV 192 (251)
T ss_pred CceeEEEEEEeE--CCeEEEEEEEeecch
Confidence 445555555555 898899999999995
No 18
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.56 E-value=0.69 Score=54.71 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE-----ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~-----~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
|..|+..| ..|+.+.+...++...|..+...+..- ...-+.-.+...+...+.+.-.++.++++.++++...+.
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555443 336666666666666655544332211 000111122223333344444444445555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010177 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 281 (516)
Q Consensus 245 ~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee 281 (516)
.-++.|+.+..++...=.+-|.++|.......+..++
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555555544444433333
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.41 E-value=0.25 Score=59.72 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---Cceeee
Q 010177 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIW 312 (516)
Q Consensus 236 LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~N---d~F~I~ 312 (516)
++.+.++++.++..++.....+...-...|+++..++..+..+.++..++..++......... .+..- ......
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 513 (1163)
T COG1196 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESG 513 (1163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhcc
Confidence 333444444445555555555555555666666666666666666666665555554443332 00000 111122
Q ss_pred ecCCeeeeccccCCCCCCCCCChHH-HHHHHH
Q 010177 313 HDGEFGTINNFRLGRLPKIPVEWDE-INAAWG 343 (516)
Q Consensus 313 hdG~fGTINGlRLGrlp~~~V~W~E-INAAwG 343 (516)
..|.||+ +|-+-.++..|.- |=+|+|
T Consensus 514 ~~Gv~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 514 LPGVYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred CCCccch-----HHHhcCcChHHHHHHHHHcc
Confidence 3456664 3444445557776 777777
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.37 E-value=0.93 Score=47.36 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=29.8
Q ss_pred CCcchhHHHHHHHHHhhcCCcccCCcchH-HH---HHHHHHHHHHHHHHH
Q 010177 143 SGFHSTITVLKRAFEIATSQTQVEQPLCL-EC---MRVLSDKLDKEVDDV 188 (516)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDhPLC~-eC---~d~Lle~Ld~qle~~ 188 (516)
..|...|..-.++|.=+..++..+.|-.. |= ..-....|+.|+..+
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~v 127 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLV 127 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45777888888888888888888888655 22 122334455555553
No 21
>PRK11637 AmiB activator; Provisional
Probab=95.31 E-value=1.2 Score=48.07 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~ 286 (516)
+....++|..+..+++.+.++++..+.+++.+..+|+.+..+.=..+..++.++...+.++..+.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555544444433334444443333333333333
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.14 E-value=1 Score=52.75 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.4
Q ss_pred cchhHHHHHHH
Q 010177 395 TRYDKAMTLFL 405 (516)
Q Consensus 395 ~kFD~AM~afL 405 (516)
.+|+.|..+.+
T Consensus 533 ~~~~~a~~~~~ 543 (1179)
T TIGR02168 533 EGYEAAIEAAL 543 (1179)
T ss_pred hhHHHHHHHHH
Confidence 56666666543
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.09 E-value=1.4 Score=51.78 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=12.6
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 010177 395 TRYDKAMTLFLSCLKDFAEFA 415 (516)
Q Consensus 395 ~kFD~AM~afL~cl~q~~e~~ 415 (516)
+.|+..+.+|..+...|....
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~~F 1045 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNENF 1045 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665533
No 24
>PRK09039 hypothetical protein; Validated
Probab=94.77 E-value=1.5 Score=46.45 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCchHhHHHHHHHHhHHHHHHH
Q 010177 452 KQENWTKALKYTLCNLKWALFW 473 (516)
Q Consensus 452 ~~e~WTkAlK~lLtNlKwlLaw 473 (516)
...+|.-+.+--..-.++++..
T Consensus 282 ~~~N~~LS~~RA~aV~~~Li~~ 303 (343)
T PRK09039 282 FRDNWELSSARAISVVKFLIAL 303 (343)
T ss_pred cccHHHHHHHHHHHHHHHHHHC
Confidence 3568999998888888888743
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=1.1 Score=53.85 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL 305 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~ 305 (516)
..+...+|..++.+...+..|+.+.++++..+..++..+-...+.+.-.+.+......+...+ .....-|-+|+..
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r~kes--- 612 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMRLKES--- 612 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHc---
Confidence 333444555666666666667777777777777777666666666655544433322222222 1122234455543
Q ss_pred CCceeeeecCCeeeeccc--cCCCCCCCCCChH
Q 010177 306 NDAFPIWHDGEFGTINNF--RLGRLPKIPVEWD 336 (516)
Q Consensus 306 Nd~F~I~hdG~fGTINGl--RLGrlp~~~V~W~ 336 (516)
|-|+|| |||-|..++-.++
T Consensus 613 ------------G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 ------------GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred ------------CCCCccccccccccccchHHH
Confidence 445666 7776665554443
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.56 E-value=3 Score=43.76 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=94.4
Q ss_pred CcchhHHHHHHHHHhhcCCcccCCc-chHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccc---c--
Q 010177 144 GFHSTITVLKRAFEIATSQTQVEQP-LCLECMR---VLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---D-- 208 (516)
Q Consensus 144 ~ls~~i~~l~~lFdILSs~s~IDhP-LC~eC~d---~Lle~Ld~qle~------~~~E~d~Y~~fL~~L~~~~~---~-- 208 (516)
-|..+|.-=.++|.=+...+.++.| |=.|=+. -.-..|+.|+.. ++....=|.-=.+-+++-.. .
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~ 153 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENL 153 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888899888888888887 4444432 223334444444 34444556654444432111 0
Q ss_pred -cCC-H-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 209 -VLS-E-ADFL-------KEKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 209 -~~s-e-e~l~-------~e~~~Le~EE~~L~~eL~~LE~e~~~l~~----El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
.+. + +-+. .-+.+|.+....|..++..|.+-..+++. ++..+++++..++.+-...-+....++.+
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~ 233 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEE 233 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011 11223445555566666666665555543 66777777777766666777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+.+.........++..-.+.++..+++
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777777777777776
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.54 E-value=1.3 Score=52.85 Aligned_cols=130 Identities=19% Similarity=0.310 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 222 IEEEERKLEAAI-EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 222 Le~EE~~L~~eL-~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+++....+.++. ..+..++.+.+.+++.|+.+.+.++.+..+.=.++|.++..+.+-++++..++..+......++.-+
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4555566666666777777777777777777777777777777777777766666555554443322
Q ss_pred hcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeeecCCCceEEec
Q 010177 301 RTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWG-QACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS 378 (516)
Q Consensus 301 ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwG-Q~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~~ 378 (516)
-+|+.|+=+.-.. +.|+| ++.-||.+|-+... .|+ +--.=|+|+|-++.+.
T Consensus 457 -----------------~~l~~lk~~k~dk--------vs~FG~~m~~lL~~I~r~~~-~f~-~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 457 -----------------EELKDLKKTKTDK--------VSAFGPNMPQLLRAIERRKR-RFQ-TPPKGPLGKYVTLKEP 508 (1074)
T ss_pred -----------------HHHHHHHhcccch--------hhhcchhhHHHHHHHHHHHh-cCC-CCCCCCccceeEecCc
Confidence 1244444443211 22333 56778888876542 344 2224488888888654
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.36 E-value=2 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
....+..+...|..+.++..+.|.+|+.++..+.
T Consensus 200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 200 SSEELKEERESLKEQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444545555555554444443
No 29
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.36 E-value=1.5 Score=50.83 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=99.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 165 VEQPLCLECMRVLSDKLDKEVDD-------VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (516)
Q Consensus 165 IDhPLC~eC~d~Lle~Ld~qle~-------~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE 237 (516)
-..|.=.||...|.+..+.=.++ +..|.+.....|+....+... .-.++.++++.|.+..++|.+.++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789998887653332222 222333333333322221110 013345555666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 010177 238 KQNAEVNAELKELELKSKR----FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (516)
Q Consensus 238 ~e~~~l~~El~~le~e~~~----L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~h 313 (516)
...+.|.+.+..+-..... |-.-|++|-+++..++.++..++...+.+++++++.+.+++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 7777666655555333222 45677888888888888877777777777777777666665 2222221
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010177 314 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 314 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 356 (516)
.+|+ +| .--+..|-.++.|-.--+..+.+.+
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 2568899999999888888777655
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.35 E-value=0.91 Score=54.50 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F 309 (516)
.+.|++|-++.++|+++|.++.+.+.+++.--...-...+.-..+|..+|.+.+.|..-+.....|+++|+..||+...=
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~ 1303 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFN 1303 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHH
Confidence 34555566666666666666554433222222222233444458888999999999999999999999999999976544
Q ss_pred eeee
Q 010177 310 PIWH 313 (516)
Q Consensus 310 ~I~h 313 (516)
-|.|
T Consensus 1304 ~~r~ 1307 (1758)
T KOG0994|consen 1304 STRH 1307 (1758)
T ss_pred HHHH
Confidence 4444
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.31 E-value=1.1 Score=48.69 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (516)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 246 (516)
+|.|..| ....+++++++.+|+..-..-+....++. ..+++++..+|++...+..+|.+.+.+..++++.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~~------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQR------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5666666 44445777777777666555554433221 3456667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 247 LKELELKSKRFKELE 261 (516)
Q Consensus 247 l~~le~e~~~L~~eE 261 (516)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666665544
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.31 E-value=4 Score=38.85 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
..+.++....+|.+.....+..+..+- .++......+.++.+...+++..++...+++.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444433211 112222223334444444555555555555555555554
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=94.29 E-value=1.7 Score=50.43 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.8
Q ss_pred CCcccCCc
Q 010177 161 SQTQVEQP 168 (516)
Q Consensus 161 s~s~IDhP 168 (516)
.|.+++.+
T Consensus 133 ~Qg~~~~~ 140 (880)
T PRK03918 133 RQGEIDAI 140 (880)
T ss_pred eccchHHH
Confidence 35555444
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=94.20 E-value=1.7 Score=50.52 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.6
Q ss_pred CCCceEE
Q 010177 370 GSYPRIM 376 (516)
Q Consensus 370 GS~SkI~ 376 (516)
|.|+.|.
T Consensus 754 ~~~~~i~ 760 (880)
T PRK02224 754 DAYSHIE 760 (880)
T ss_pred CCeeEEE
Confidence 4555554
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.20 E-value=2.2 Score=42.59 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
++.+..+....++.+|....+++.+|..+...++.|+..+.++-.-...+..++..+...+..+..+++.+...+.+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666666666666666666666666666666666666666666666666655554
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.98 E-value=1.4 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
++.++...+.+.+.|...+..++.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444444444445445544443
No 37
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.96 E-value=5.4 Score=39.29 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
||..|+.++.+..+.......-+..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~ 54 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555444443
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.92 E-value=1 Score=43.16 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 176 VLSDKLDKEVDDVTRDIE 193 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d 193 (516)
.+-.+++..++.+.++|+
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345567777777766664
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=2.4 Score=48.17 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~-~~W~--e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
.+++.+++..-++|..+...|+.+.+++++++..|+.++..+...++ ..|. ++..++.....++.++..-...++..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666667777777777777777777776666653332 3333 23333333444444443333444444
Q ss_pred HHHHHHHhhccc
Q 010177 293 QAHLELLKRTNV 304 (516)
Q Consensus 293 ~~qLdkLrktNV 304 (516)
...|.+|++.+-
T Consensus 501 ~~~l~~l~k~~~ 512 (652)
T COG2433 501 ERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.87 E-value=2.7 Score=51.06 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCcchhHHHHHHHHHhhcCCcccC-------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 143 SGFHSTITVLKRAFEIATSQTQVE-------------QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~ID-------------hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
.-++.+......||+-+++-+..+ .--|..| +.++..++.+++.+.++++.-..|.+
T Consensus 148 ~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 148 EIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777776643322 1235553 44566688888888888887666654
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.83 E-value=2.7 Score=47.31 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 246 (516)
+.+|...|..+..++.+.|.+||.+...+.+.
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555444444333
No 42
>PRK02224 chromosome segregation protein; Provisional
Probab=93.80 E-value=1.5 Score=50.93 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
+.+.+++...+...+......++.|...
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.76 E-value=1.6 Score=43.36 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.+..+++|+++++.+.+.-..-++.. ..++...+...+.+..+|.++.++|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777665544422221110 123344444455555556666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 010177 257 FKELEERYWQ 266 (516)
Q Consensus 257 L~~eE~~~W~ 266 (516)
+++.+..-|=
T Consensus 165 ~~~~~~~~wf 174 (206)
T PRK10884 165 KQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 44
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.74 E-value=2.5 Score=42.72 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.+|...|..|.....++|.++......++..|+.++.+..+.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555554444333
No 45
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.70 E-value=2.7 Score=46.81 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (516)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e 267 (516)
.++|-..|-.|+++|..-... ...+.+++...-+|...+.+|+..|+.+...++.+++.+.-|.+.+++.-..|-..
T Consensus 193 ~~keq~~y~~~~KelrdtN~q---~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQ---ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888877632111 12244566666666677777777777777777777777766666666655555555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeec
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 314 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hd 314 (516)
-..++.++.+.+|+-......++-++..|..|+.+...+....-.|+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 56666667777777777777788889999999998888876654443
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.67 E-value=2.5 Score=44.13 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010177 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (516)
+++..+..++..++.+++.++.. .-+.+-.=-.||...+++-...|.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~-l~~~~i~AP~dG~V~~~~~~~~G~ 292 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDR-LQRLIIRSPVDGTVQSLKVHTVGG 292 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcEEECCCCcEEEEEEEEccCc
Confidence 34455556666666666654431 111111223467766665555565
No 47
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.61 E-value=0.41 Score=48.24 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~ 286 (516)
++...++.+.+|...|..+++++|.+.++++..|+.++.|..+|++.-+..-.++..++..+.++++......
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 3444466677788889999999999999999999999999999988877777788888888877777655444
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.50 E-value=2.7 Score=52.50 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=8.5
Q ss_pred cchhHHHHHHHHHHHHH
Q 010177 395 TRYDKAMTLFLSCLKDF 411 (516)
Q Consensus 395 ~kFD~AM~afL~cl~q~ 411 (516)
..-..+|-..|.-.+++
T Consensus 627 ~~v~~~mq~~~~~~~~~ 643 (1486)
T PRK04863 627 QDVTEYMQQLLEREREL 643 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544444
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.45 E-value=6.1 Score=37.19 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
|+.++..+++|...-..-+..+..+..+.- .-+.+..++..+-.+.+.|..+|..+-+++..+.+++...+.+...|+.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444332211000 0122344445555566666666666666666666666666666555554
Q ss_pred HHH
Q 010177 260 LEE 262 (516)
Q Consensus 260 eE~ 262 (516)
...
T Consensus 102 ~~~ 104 (140)
T PF10473_consen 102 LNS 104 (140)
T ss_pred HhH
Confidence 443
No 50
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=4.6 Score=45.59 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAH 278 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~ 278 (516)
+.-+++|..+-++..+
T Consensus 343 ~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 51
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.38 E-value=3.8 Score=44.46 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.+|..+|..|-.++.+++++...|..+.++|.
T Consensus 147 q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 147 QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.22 E-value=5.8 Score=41.51 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
+.|.+.|+..++.++.|.......++.+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777766666666554
No 53
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.21 E-value=7.2 Score=40.74 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
..++.++..++.+...+..+++
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555544
No 54
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.20 E-value=6.6 Score=35.90 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 266 ~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
.....++.++.+.+..++.|..|-....+||+.|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566677777777777777777777777765
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=6.8 Score=44.25 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
.-++-|.+....++.|..-|+.++..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 346677888888888888888888877643
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.99 E-value=6.5 Score=36.80 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
|...|..||.+.++.+..|.....++...+.-=. .|.++...++.+++....+|+-...++..++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae-------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAE-------HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444433333322111 2333444445555555555555555554443
No 57
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.78 E-value=2.7 Score=44.45 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~s-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
-..-++.|.+++.+++.|++.+..-+.+.+.... ..++ .+++..+++++.+....|+.++..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444778999999999999999998877653321 1112 256777888888888888889999988999988888
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 248 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 248 ~~le~e~~~L~~eE~--------------~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
...+.+..+|+.+-. ....+-.-++-++...++|...+...+.-=..-|++
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888754321 122222334455777888888777665555556664
No 58
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.76 E-value=7.1 Score=38.34 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 235 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433445556666666655555555555555444
No 59
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=4.4 Score=45.74 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~--------------l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~e 280 (516)
.+.+|+.|.+.++++|.....|.+. ++.+...|..++++++..|.+...+|+.++-+=+.+|.
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3344566666666665554444443 44556666777777778888888888877655444443
No 60
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.72 E-value=2.8 Score=47.04 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
..+=.+.+-+.++.=++..++|..++....+..
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666777777777777888888876654433
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.67 E-value=9.6 Score=38.10 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
..+...+.--..+...+.+|+.+...+...|+.++.......+.|..|=..+..+..+|.+.....+....+.......+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566677777777777777777776666666666666666666666666655555555555444444444
Q ss_pred HHH
Q 010177 297 ELL 299 (516)
Q Consensus 297 dkL 299 (516)
+.|
T Consensus 207 d~l 209 (237)
T PF00261_consen 207 DRL 209 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 62
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.60 E-value=4.4 Score=44.05 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
++.++.++..++.+...|...++.+++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555666666666666666665544
No 63
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.59 E-value=5 Score=48.17 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.+.+..++++.+.|.++++.-++.+...-.. ......+.+++++++.....-..+++.++.+..++..+|++-+.-..+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566665555555432110 001133455566666666666677777777777777777666666677
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
++..|...-+.-..++..+...+++..++-.+++
T Consensus 523 ~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 523 QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776666677777777777777776655443
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.52 E-value=8.8 Score=35.53 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.4
Q ss_pred HHHHHh
Q 010177 295 HLELLK 300 (516)
Q Consensus 295 qLdkLr 300 (516)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 344443
No 65
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.52 E-value=14 Score=37.77 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
.+..|...+...+..|+.+...+......|+..+ .+.|.+|=.+...++..+..++.++..+..++.........
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l---~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQL---RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH---HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444432 23333333444444555555555555555554444433333
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.48 E-value=6.6 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=10.3
Q ss_pred CCCcchhHHHHHHHHHhhcC
Q 010177 142 NSGFHSTITVLKRAFEIATS 161 (516)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs 161 (516)
|..|...|+.+...|..=++
T Consensus 65 N~~L~~di~~lr~~~~~~ts 84 (546)
T KOG0977|consen 65 NRKLEHDINLLRGVVGRETS 84 (546)
T ss_pred HHHHHHHHHHHHhhccCCCc
Confidence 45555566555555544333
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.43 E-value=3.8 Score=46.60 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
|+. ++.+..+.+.|..-.+ ++. ...++.+++++++.+..++..+++.++.+.+.+++++..++.+..
T Consensus 181 l~~-~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 181 LDL-IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred cHH-HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5556666666544322 111 112344455555555555555555555555555555555554433
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.39 E-value=3 Score=52.06 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
..++|.-++.+.+.++..++.++..+...++.+++.
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666667777776666666553
No 69
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=5.1 Score=45.21 Aligned_cols=98 Identities=24% Similarity=0.308 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHH-
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEV-----------------NAELKELELKSKRFK--ELEERYWQEFNNFQFQ- 274 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l-----------------~~El~~le~e~~~L~--~eE~~~W~e~N~~q~q- 274 (516)
+..|+...+.-|.+|..+..+||.|.--| .-||+.|+++..-|+ -+|....++..+.|++
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEE 233 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEE 233 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777776655443 344555544444333 2233444555444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee-----cCCeee
Q 010177 275 -LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH-----DGEFGT 319 (516)
Q Consensus 275 -L~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~h-----dG~fGT 319 (516)
|..++.||++-.+ .... |..+=-.|+.|+|+| ||.||-
T Consensus 234 ALeTlq~EReqk~a----lkkE---L~q~~n~e~~~~~n~l~~sldgk~~e 277 (772)
T KOG0999|consen 234 ALETLQQEREQKNA----LKKE---LSQYRNAEDISSLNHLLFSLDGKFGE 277 (772)
T ss_pred HHHHHHhHHHHHHH----HHHH---HHHhcchhhhhhhhhhheeccccccc
Confidence 3333444432211 1222 333334567777665 565654
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.24 E-value=3.2 Score=41.18 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 279 QEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
.+++..+.++.+.+..+++.++++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555533
No 71
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.10 E-value=1.1 Score=43.51 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQR 201 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~ 201 (516)
+-.+..++.++.+.+.....-|..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 344666677766665554444443
No 72
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=5.5 Score=47.53 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 172 ECMRVLSDKLDKEVDDVTRDIEAYEAC 198 (516)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~f 198 (516)
+=-+.|+..++.+|..++.|+.....|
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Y 213 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKY 213 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345678888999988888877764444
No 73
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.93 E-value=5.7 Score=41.75 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
.|-++-+++.++--.|..-|+++..... .++..++...+.+++.........|++++++.+.+..+|..++..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888898999999988875432 466677777777777777777777777777777777777665544
No 74
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.84 E-value=4.8 Score=36.90 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (516)
-.+++.|..++...+-|+.+++.-+.+|..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999888887543
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.78 E-value=7.8 Score=38.15 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~-~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
++.......+++...+.+.+|..++.+...|.++=+ +...+...++.+|...+.+.+.-..++...
T Consensus 78 R~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 78 RKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433332211 333334444444444444444333333333
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.77 E-value=10 Score=34.74 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+...+..++-|...+..++..+++++..+.+||-.+-.+..++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554444333
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.57 E-value=5.7 Score=44.65 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
++.+-..+...+........++..++.++..+...++.+...++...+.+...-.+..+.+..+..+
T Consensus 360 Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 360 LEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334445555555555555555555556666655555544444444433333
No 78
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.42 E-value=13 Score=36.25 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccc----ccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRL---EGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETE 237 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L---~~~~~----~~~see~l~~e~~~Le~EE~~----------L~~eL~~LE 237 (516)
..|+..|+.++.+-.+-|..+..-+..- ..... +.....++..-+.+|++|..+ |..+|++.-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888777777777666211 10000 001123444455556555544 566777777
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Q 010177 238 KQNAEVNAELKELELKSKR----FKELEERYWQEFNNF 271 (516)
Q Consensus 238 ~e~~~l~~El~~le~e~~~----L~~eE~~~W~e~N~~ 271 (516)
.....|..+|..+..+... |...|..||.+-..|
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888777655554 334444444443333
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.21 E-value=12 Score=45.10 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCCCceeeeCCccceeeEEecCCCCchHhHHHHHH
Q 010177 429 CFKLPYKIENDKVENYSITQSFNKQENWTKALKYT 463 (516)
Q Consensus 429 ~~~LPY~I~kDkIgg~SIkl~~n~~e~WTkAlK~l 463 (516)
.+.+|- .++-.+|+-|++.|+. -|...|-=|
T Consensus 1053 kL~Ppe--g~~~~dGLEvkV~~G~--iWKeSL~EL 1083 (1174)
T KOG0933|consen 1053 KLEPPE--GKTVLDGLEVKVKFGG--IWKESLSEL 1083 (1174)
T ss_pred cccCCC--CCccccceEEEEEeCc--cHHHHHHHh
Confidence 355552 3556789999998886 798877443
No 80
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.19 E-value=10 Score=46.72 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+++..++..++.+...+..++..+..+.+.+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555555555555555555555555555
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.19 E-value=17 Score=42.27 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010177 155 AFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (516)
Q Consensus 155 lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (516)
.|-.-+..+.| .|+-.|-...+.. +++++..+.+|||+.+.-.+.|+++.
T Consensus 390 ~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 390 DLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444445544 4677777777665 89999999999999999888777653
No 82
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=91.10 E-value=6.3 Score=40.25 Aligned_cols=103 Identities=25% Similarity=0.382 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEK-QNAEVNAELKELELKSKRFK---ELE----ERYWQEFNNFQFQLIAHQEERDA 284 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~-e~~~l~~El~~le~e~~~L~---~eE----~~~W~e~N~~q~qL~~~~ee~~s 284 (516)
+.+..|+++--.+-+.|..++..+++ +..-+..+++.|..+..+|+ ++. ..|=.+.+.+|..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r---------- 229 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKR---------- 229 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH----------
Confidence 45666777666666667777766654 44456777777766655553 222 2233333444444
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHH
Q 010177 285 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 342 (516)
Q Consensus 285 l~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 342 (516)
+...+.+|+-|+. -++.-|-.+.|-. |+ .++|+-.|||-||
T Consensus 230 ----~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 230 ----LAQLQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ----HHHHHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 4444444444432 2455677777743 22 2578999999998
No 83
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.04 E-value=0.87 Score=40.86 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.2
Q ss_pred cCCCceeeeecCCeee
Q 010177 304 VLNDAFPIWHDGEFGT 319 (516)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (516)
+|++=|||-| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999977 66765
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.94 E-value=19 Score=36.81 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+++.+..++....-.+..+++++...+.+|+.|+
T Consensus 104 el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 104 ELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3333344433333333444444444444444443
No 85
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.89 E-value=13 Score=37.64 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
+.+|.+.|..|+....++|+.....+..|+..=++-|.+.+..+.....+.+|..-++.+++
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666677777766666555555444444433
No 86
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=6.4 Score=47.00 Aligned_cols=138 Identities=18% Similarity=0.343 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee-------ecCCeee
Q 010177 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW-------HDGEFGT 319 (516)
Q Consensus 247 l~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~-------hdG~fGT 319 (516)
...+..+..++...-+..|++-+.++..+... +.-+..++.+|...-..+|+|-.=.|. ..|.|||
T Consensus 455 ~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~-------~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~ 527 (1200)
T KOG0964|consen 455 NTELKRELDELQDKRKELWREEKKLRSLIANL-------EEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGT 527 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhccccccee
Confidence 33333444444444556677766665544433 334455566666666666666432221 4677777
Q ss_pred eccccCCCCC----------------CCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecC--CCceEEec-CC
Q 010177 320 INNFRLGRLP----------------KIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMG--SYPRIMDS-NN 380 (516)
Q Consensus 320 INGlRLGrlp----------------~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmG--S~SkI~~~-~~ 380 (516)
.-.| =.+| ++-|+=+||- ...|..|- ++ ++. +..+.|+- +++.+.-. +.
T Consensus 528 v~eL--~~v~~~f~tavEvtaGNsLF~iVVdndevA------TkIl~~~n-~m--~~G-rVTF~PLNrl~~r~v~yp~~s 595 (1200)
T KOG0964|consen 528 VYEL--IKVPNKFKTAVEVTAGNSLFNIVVDNDEVA------TKILRKLN-KM--KGG-RVTFMPLNRLKARDVEYPKDS 595 (1200)
T ss_pred hhhh--hcCCHHHHhHHhhhcccceEEEEecccHHH------HHHHHHHH-hc--cCC-eeEEeecccCchhhccCCCCC
Confidence 5432 1222 3667888873 23333332 33 444 77888997 44333211 22
Q ss_pred ceeecccCCCCccccchhHHHHHHH
Q 010177 381 NTYELFGPVNLFWSTRYDKAMTLFL 405 (516)
Q Consensus 381 ~~~eLyg~~~lf~~~kFD~AM~afL 405 (516)
+..||-. .+=...+||+|+.+..
T Consensus 596 daiPli~--kl~y~p~fdka~k~Vf 618 (1200)
T KOG0964|consen 596 DAIPLIS--KLRYEPQFDKALKHVF 618 (1200)
T ss_pred CccchHH--HhCcchhhHHHHHHHh
Confidence 3344432 1223678999887654
No 87
>PRK01156 chromosome segregation protein; Provisional
Probab=90.76 E-value=8.3 Score=45.23 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
++.....+.++.++...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777788888777777777776765
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.66 E-value=6.1 Score=38.28 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010177 269 NNFQFQLIAHQEERDAI 285 (516)
Q Consensus 269 N~~q~qL~~~~ee~~sl 285 (516)
|.++-++..++.|.+.|
T Consensus 161 ~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 161 NMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 89
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.65 E-value=13 Score=38.66 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
|++|+.+++.+.+|++.-.=-|+.|+. +...+ ++-..+...|+.|-..|....+.||+.+..+..++.--+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 677888888888888765545555432 11100 1111223334455555555555566655555543332222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010177 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (516)
Q Consensus 254 ~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd 307 (516)
.+|-+.-+|.......+.|+..+.....+|++.+..+.-.+
T Consensus 96 -------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 96 -------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23334444444445555566666666777777777766333
No 90
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.63 E-value=11 Score=39.12 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLEL 298 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~---~q~~~a~~qLdk 298 (516)
|+.+...++.....|+.+..++.-|+..++. .++.+--+|++....+..++.......+++. ..++++..-|++
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444444445555555555555444444332 2444444667777777666665555544443 456777777888
Q ss_pred HhhcccCC
Q 010177 299 LKRTNVLN 306 (516)
Q Consensus 299 LrktNV~N 306 (516)
-++--||.
T Consensus 127 akRati~s 134 (333)
T KOG1853|consen 127 AKRATIYS 134 (333)
T ss_pred hhhhhhhh
Confidence 88766654
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.60 E-value=5.3 Score=46.30 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
...+||.|...|..||+..|++...++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443
No 92
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.53 E-value=14 Score=39.01 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 010177 267 EFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl 285 (516)
.+|.+..+...+..+...|
T Consensus 179 lvN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444544444444433333
No 93
>PRK01156 chromosome segregation protein; Provisional
Probab=90.50 E-value=9.7 Score=44.70 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010177 170 CLECMRVLSDKLDKEVDDV 188 (516)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~ 188 (516)
|.+.....+..++.++...
T Consensus 167 ~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 94
>PRK09039 hypothetical protein; Validated
Probab=90.46 E-value=12 Score=39.61 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
.-+..+..+++.+++++..-+..++
T Consensus 81 ~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 81 DSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666554444333
No 95
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.46 E-value=9.7 Score=48.75 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHHH
Q 010177 396 RYDKAMTLFLSCLKD 410 (516)
Q Consensus 396 kFD~AM~afL~cl~q 410 (516)
+++++..+-|.-++.
T Consensus 1238 ~~~k~~E~~l~elq~ 1252 (1930)
T KOG0161|consen 1238 KKDKKLEAQLSELQL 1252 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555544444433
No 96
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=28 Score=37.35 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
++|.+.|..-...|+. .++++.+-.++|+.+++.|++++..|.++.+-|..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455554444442 235555566677777777777777777776666554444
No 97
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.32 E-value=9.9 Score=40.79 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
++.+-+++++.-|+-+-.+++.+-.+...+.+++.+++.+.++...
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777777777777777777666555543
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.28 E-value=5.9 Score=48.77 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=5.1
Q ss_pred eccccC
Q 010177 320 INNFRL 325 (516)
Q Consensus 320 INGlRL 325 (516)
|.++|+
T Consensus 1159 ~~~i~~ 1164 (1311)
T TIGR00606 1159 IEYIEI 1164 (1311)
T ss_pred HHHhhc
Confidence 788888
No 99
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.20 E-value=16 Score=34.18 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
++.|...|...+..||.+.+.+..++..++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555544444444
No 100
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=5.6 Score=45.31 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR--FKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~--L~~eE~-~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
+..++|+.|-..|..+|++++++.+.|++++..+..+... ....|- ..=+..+.|+.+|.+-..+.+.|+.++..+.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666655443321 111111 1224567788888888888888888776655
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.89 E-value=8.7 Score=47.68 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.9
Q ss_pred EEecCCCCchHhHHHHHHHHhHHHHHHHHhhCCC
Q 010177 446 ITQSFNKQENWTKALKYTLCNLKWALFWFVGNTN 479 (516)
Q Consensus 446 Ikl~~n~~e~WTkAlK~lLtNlKwlLawv~~~t~ 479 (516)
+.+.-+-++.|--++-=-|+-.--|=|||+-.-.
T Consensus 608 ~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 608 VDFADDVPADVRAGLEAALEAAGLLDAWVTADGT 641 (1353)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcc
Confidence 3344445789999999999999999999985433
No 102
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.71 E-value=10 Score=42.55 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
...|-+.|...|...|++++.+..||+.+......|++ +.=....+++-||....|.+.+++.++.....+++.|+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777887888888887777777766555543 334566778888999999999999999999999999985
Q ss_pred c
Q 010177 302 T 302 (516)
Q Consensus 302 t 302 (516)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 3
No 103
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=89.71 E-value=2.9 Score=47.27 Aligned_cols=83 Identities=27% Similarity=0.284 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F 309 (516)
..||.++|..+++++.||+++..+++++++ .+...|-|+.+|+..+++++.+++.|+.+|--.-..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~--------------~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~L 157 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKR--------------LIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFL 157 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceee
Confidence 456777777777777777777666555543 333445667788889999999999999999888877
Q ss_pred eeee--------cCCeeeeccccCC
Q 010177 310 PIWH--------DGEFGTINNFRLG 326 (516)
Q Consensus 310 ~I~h--------dG~fGTINGlRLG 326 (516)
.|+- -.+-..|-+.||-
T Consensus 158 P~sllP~~~pr~l~pp~~~~~c~lh 182 (907)
T KOG2264|consen 158 PFSLLPLQIPRELEPPSQISPCQLH 182 (907)
T ss_pred ccccCcccCcccCCCccccCcccch
Confidence 7772 1244556666664
No 104
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.54 E-value=5.1 Score=40.24 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
+++|.+.+.++++.|+++.++...+++.++.+..+|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544444443
No 105
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.53 E-value=16 Score=40.34 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.7
Q ss_pred cCCCCCce
Q 010177 66 STRMDNSF 73 (516)
Q Consensus 66 ~~~~d~s~ 73 (516)
.-|||.|.
T Consensus 182 LERMD~s~ 189 (493)
T KOG0804|consen 182 LERMDSST 189 (493)
T ss_pred HhhcCccc
Confidence 45788776
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.50 E-value=20 Score=39.10 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.8
Q ss_pred HhHHHHHHHHhhCC
Q 010177 465 CNLKWALFWFVGNT 478 (516)
Q Consensus 465 tNlKwlLawv~~~t 478 (516)
..+-|+|---..++
T Consensus 453 ~~f~~~lR~qad~P 466 (499)
T COG4372 453 STFGWCLRSQADTP 466 (499)
T ss_pred hhHHHHHHHhcCCc
Confidence 34556664433343
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.44 E-value=19 Score=41.97 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
...+..|+.+++.+..|+..=+..-+.|+.+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444577777777777777766655555543
No 108
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=89.30 E-value=0.15 Score=34.54 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.2
Q ss_pred CcchhHHHHHHHHHhhcCC
Q 010177 144 GFHSTITVLKRAFEIATSQ 162 (516)
Q Consensus 144 ~ls~~i~~l~~lFdILSs~ 162 (516)
.+|+|+++...+|||+|+|
T Consensus 7 ~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 7 NLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHCCTT--
T ss_pred ccchhheecccccccccCC
Confidence 4899999999999999985
No 109
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.14 E-value=32 Score=36.11 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EA---DFLKEKLKIEEEERKLEAAIEETEKQ-------NAE 242 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s-ee---~l~~e~~~Le~EE~~L~~eL~~LE~e-------~~~ 242 (516)
...-++.+++|++.++++.+.-+.-|...+.+.. .++ +. .....+..|+.+..+++.+|.++... ...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 4556677777777777777776666666554332 122 11 12233445555555555555544321 112
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 010177 243 VNAELKELELKSKRFKELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 321 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE-~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTIN 321 (516)
+++++..++.++.+....- ...=...+....++.+++.+.+.....|+.+...++.++-.--. ....+. .|-
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~-~~~~~~------vi~ 319 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR-QQLYLE------VIS 319 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeee------eee
Confidence 3334444443332221100 00011356666777777888888888888888888877722211 111211 111
Q ss_pred cccCCCCCCCCC-ChHHHHHHHHHHHHHH
Q 010177 322 NFRLGRLPKIPV-EWDEINAAWGQACLLL 349 (516)
Q Consensus 322 GlRLGrlp~~~V-~W~EINAAwGQ~~LLL 349 (516)
--.+|..|+ |+.=.|.+.|-++.|+
T Consensus 320 ---~p~~P~~p~~P~~~~~l~~~~~~gl~ 345 (362)
T TIGR01010 320 ---QPSLPDDALEPYRLYNILATFVILLI 345 (362)
T ss_pred ---CCCCCCCcCCChHHHHHHHHHHHHHH
Confidence 122444444 3666677776665443
No 110
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.13 E-value=25 Score=37.38 Aligned_cols=167 Identities=13% Similarity=0.233 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cc--c---------cC----CHHHH-------HHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR--D---------VL----SEADF-------LKEKLKIEEEERKLE 230 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~-------~~--~---------~~----see~l-------~~e~~~Le~EE~~L~ 230 (516)
.|-++++....|+|.|..-.+.|... .. . .+ ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888887766655411 00 0 00 00112 234445666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELEL------------KSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~------------e~~~L-~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
++|.+++.+..-+...+...+. +.++| .++ ++.+.....+++++....+|...+....++-+...+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666655555554431 11122 222 235555566666666666665555555555555555
Q ss_pred HHhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010177 298 LLKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 298 kLrktNV~Nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 356 (516)
||..- ..+| +++..+-.|.+|-+=- ..==..|+.+-.-.-|+..+|.+|-
T Consensus 172 RLN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 172 RLNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55321 1111 0111222333332210 1112358888888999999998764
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.12 E-value=26 Score=35.00 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
..++.+...+..++..++.+.+++.+++.+..++..++.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777776666666555543
No 112
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.99 E-value=24 Score=34.47 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=58.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLK-EKLKIEEEERKLEAAIEETEKQNAE 242 (516)
Q Consensus 165 IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s-ee~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~ 242 (516)
+..|- .=.+..|..|+..+..+.........--++++.+...... .++... -...|+..++.|..+ +-.+...
T Consensus 21 ~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~---al~~k~~ 95 (221)
T PF04012_consen 21 AEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE---ALQRKAD 95 (221)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 44565 4455556666666666665555555544444432110000 000000 011122222222211 1112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
++.++..++.....+.....++-..+..++.++.++..++..+.++...++.+.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555666667777777777777777766665443
No 113
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.99 E-value=23 Score=45.57 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~ 266 (516)
+.+++.|...++.+++.|+.+...+++.....-+
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455554444444333333333
No 114
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.81 E-value=32 Score=36.49 Aligned_cols=58 Identities=33% Similarity=0.538 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---CC-HHH-----HHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV---LS-EAD-----FLKEKLKIEEEERKLEAAIE 234 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~---~s-ee~-----l~~e~~~Le~EE~~L~~eL~ 234 (516)
++..|.++++.+++|...|...|.+|..+..+- +. +.+ +.+...+|+.|.+.|...|.
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777888888888888888888887654221 10 111 33455667777777666665
No 115
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.75 E-value=30 Score=40.42 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 277 AHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 277 ~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
++.+|++.+..+++..+..++.+++
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544443
No 116
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=88.72 E-value=14 Score=43.68 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=75.0
Q ss_pred HHHHHHhhcCCcccCCc--chHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhccccccCCHHHHH---
Q 010177 152 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEA----------YEACLQRLEGEARDVLSEADFL--- 216 (516)
Q Consensus 152 l~~lFdILSs~s~IDhP--LC~eC~d~Lle~Ld~qle~~~~E~d~----------Y~~fL~~L~~~~~~~~see~l~--- 216 (516)
++.+...||..-.+-+| .|.+=.......+..=+..+.+|.+. |...++++..+. +.++..
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~r----e~Eea~~q~ 596 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVER----EAEEAQEQA 596 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH
Confidence 44555777777777788 48887777666665555555555544 333333332221 111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHH
Q 010177 217 -KEKLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELE-------------ERYWQEFNNFQFQLIAHQ 279 (516)
Q Consensus 217 -~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E---l~~le~e~~~L~~eE-------------~~~W~e~N~~q~qL~~~~ 279 (516)
++.+.-+.|+++|.+++.+=|+++-..+.+ .+++++....+.+-| -+-..--.-.+.++.+++
T Consensus 597 ~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~ 676 (988)
T KOG2072|consen 597 KEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELE 676 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHH
Confidence 111122556666666666555444433332 222222222221111 011111122346777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 010177 280 EERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkLrk 301 (516)
.++..++.++++.-..+|.+.+
T Consensus 677 Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 677 KERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888888877776655
No 117
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.70 E-value=13 Score=40.74 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
+.|+++.+++.++.....--.++..+..- ....+.+.+.+.+.|.|.++|.+|..++-.++-+.+++-+-+.......+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766544444444433210 00112233444455666666666666655555554444444444444445
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010177 259 ELEERYWQEFNNFQFQLIAHQEERDAIS 286 (516)
Q Consensus 259 ~eE~~~W~e~N~~q~qL~~~~ee~~sl~ 286 (516)
.++-++..+...++.|--+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555555555555555555544444443
No 118
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.54 E-value=26 Score=40.66 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCH--HHHHHHHHHHHHHHHHHHHHHH--------------
Q 010177 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSE--ADFLKEKLKIEEEERKLEAAIE-------------- 234 (516)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~se--e~l~~e~~~Le~EE~~L~~eL~-------------- 234 (516)
+=+...++.|++|+..+.++.+.-+.-|+..+.+..- .++. .....+..+++.+...+..++.
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 3345556777777777777777777666666543210 1111 1122233333333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 235 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
.+..+.+.+++++..++.+.. .....+.++.+++.+.+..+..|+...+..+.++=
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333333 34444555556666666666667666555555443
No 119
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.27 E-value=25 Score=33.79 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~--------l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ 279 (516)
..++.++|+..+......|-++.+.... .=.+-..++.++.-+.+.|.+.-.-.+.++..|..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665444321 1122233344444445555555555566655544443
No 120
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.17 E-value=23 Score=35.04 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCC-----cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 151 ~l~~lFdILSs~-----s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~ 197 (516)
.++||++|+.++ ..+..|. .=.+.++..|+..+..+....-....
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555542 1223343 24566666677666665554444333
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.06 E-value=27 Score=40.92 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
.+++..++.-|.+|.++..+||.|.-.+.+++..|
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666665555554444
No 122
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.92 E-value=13 Score=37.75 Aligned_cols=38 Identities=34% Similarity=0.535 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
++.+..+|..+....+.++..|.+++.+++.+...|.+
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555555555555543
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.74 E-value=10 Score=41.59 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=14.5
Q ss_pred CeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 010177 316 EFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMC 353 (516)
Q Consensus 316 ~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla 353 (516)
.||-||-=|+.+. +.+.+...++.-+=..|+
T Consensus 151 ~~~~l~~~~~~~i-------~~l~~~~~~l~~~~~~ia 181 (420)
T COG4942 151 YYGALNPARAERI-------DALKATLKQLAAVRAEIA 181 (420)
T ss_pred HHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3555555555543 344444444444444443
No 124
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.68 E-value=18 Score=43.59 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQR 201 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~ 201 (516)
=..++.++++|++.|.+-++.
T Consensus 785 re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665543
No 125
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.56 E-value=27 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=16.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCcccCCcchHHH
Q 010177 142 NSGFHSTITVLKRAFEIATSQTQVEQPLCLEC 173 (516)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC 173 (516)
+.+|++|+. ..+..|| .+..||.|.+-
T Consensus 153 ~f~F~~r~E--~eV~~~l---KnL~YPfl~sI 179 (622)
T COG5185 153 GFGFTKRIE--NEVYQIL---KNLRYPFLESI 179 (622)
T ss_pred CCCcchhhH--HHHHHHH---HhcCCchhhhh
Confidence 456777665 3455555 34677777653
No 126
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.55 E-value=7.3 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~-~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+++.++..|+++.+.+.+|-+.|++....+++.=. ..=.+...++.+..++++++..+..++...+.+|+-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444444444444433333332211 11122334444555555666666666666666665433
No 127
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.52 E-value=20 Score=41.11 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHHHHHHhhC
Q 010177 459 ALKYTLCNLKWALFWFVGN 477 (516)
Q Consensus 459 AlK~lLtNlKwlLawv~~~ 477 (516)
-||-=|-=|+-++.|++|.
T Consensus 488 ~mk~kl~elq~lv~~l~~~ 506 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLVGD 506 (617)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5676677778888888853
No 128
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.42 E-value=8 Score=45.30 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=13.5
Q ss_pred ceeccccCcceE----Eeecccch
Q 010177 21 RWVCQNCRHFLC----IVGVDSYA 40 (516)
Q Consensus 21 ~~~cq~c~~~l~----i~~~d~~~ 40 (516)
.+.+.+-+|||. +|..|..+
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l 318 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNL 318 (771)
T ss_pred CEEEccccCceecCCceEeceeEe
Confidence 677888888876 44455444
No 129
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.28 E-value=20 Score=40.49 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cccc------------cCCHHH------HHHHHHH
Q 010177 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG----------EARD------------VLSEAD------FLKEKLK 221 (516)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~----------~~~~------------~~see~------l~~e~~~ 221 (516)
+.+=.+.+-+.++.=++.+++|.+++...-+.+.. .... .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66666667777777777788888886655443321 1000 111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
|+..-..+...+.+-..-...+..+++++...+..++++-..+|..+..+..+-....+.+..+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23322333333333233334566777777777777777777888888888888777777777777777776665554432
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 010177 302 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (516)
Q Consensus 302 tNV---~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 355 (516)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++..+
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112221111 111111 012347899999999888776666555443
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.26 E-value=32 Score=37.56 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 241 AEVNAELKELELKSKRFKELEERY---WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 241 ~~l~~El~~le~e~~~L~~eE~~~---W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
.+++.++..++.+...++.+.+++ -..+...+.++..++.+.+.....|+.....++..+-
T Consensus 320 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 320 AEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443332222 2334556667777777777777788887777776654
No 131
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.24 E-value=77 Score=38.26 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 010177 337 EINAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 337 EINAAwGQ~~LLL~tla~~l 356 (516)
-|.||+|-=.+.-+.--+++
T Consensus 439 QVDAAlGAE~MV~qLtdknl 458 (1243)
T KOG0971|consen 439 QVDAALGAEEMVEQLTDKNL 458 (1243)
T ss_pred HHHHhhcHHHHHHHHHhhcc
Confidence 37788887666554333333
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.08 E-value=23 Score=40.12 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (516)
++.++..+..|.+.|..-+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 44444445555555554433
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.02 E-value=40 Score=38.54 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+++.+++.+..++..++..++.+..++..++.+++.+..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554444
No 134
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.00 E-value=12 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=15.4
Q ss_pred cceeccccCcceE----Eeecccch
Q 010177 20 PRWVCQNCRHFLC----IVGVDSYA 40 (516)
Q Consensus 20 ~~~~cq~c~~~l~----i~~~d~~~ 40 (516)
+.+...+-+|||. +|..|..+
T Consensus 299 ~~i~l~~~rHPll~~~~~Vpndi~l 323 (782)
T PRK00409 299 GKIDLRQARHPLLDGEKVVPKDISL 323 (782)
T ss_pred CcEEEcCcCCceeccCceECceeEE
Confidence 3577889999997 56666555
No 135
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.55 E-value=11 Score=36.29 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
...+..|.+.|+.+.+++.++++.|+.|...|
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544444
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.55 E-value=7.6 Score=45.47 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=5.2
Q ss_pred eeeccccCC
Q 010177 318 GTINNFRLG 326 (516)
Q Consensus 318 GTINGlRLG 326 (516)
-|-||||--
T Consensus 631 et~~~~~~~ 639 (1118)
T KOG1029|consen 631 ETTNGFPAN 639 (1118)
T ss_pred cccccCchh
Confidence 356777643
No 137
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.52 E-value=9.4 Score=44.77 Aligned_cols=40 Identities=35% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
.+|++++.+++++.+++++.++++++..++++++.+++++
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 138
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.49 E-value=40 Score=34.24 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
..++.+-..|..+..+++.+..+|..+....+.+...|...=..+=.....+.-....-..+...+..++..++..+.
T Consensus 43 k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 43 KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555554444444444444444444445555555444555555566666666655443
No 139
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.48 E-value=48 Score=39.60 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
++...|.....+..++.+.-..-+.+++++..+|++.-++.=++.........+..+..++++..+...+.++++|+++
T Consensus 438 ~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 438 QEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333334444444444433333333333333344444555556667777777888888887
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.18 E-value=24 Score=35.43 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=5.0
Q ss_pred CCCCceee
Q 010177 429 CFKLPYKI 436 (516)
Q Consensus 429 ~~~LPY~I 436 (516)
-++||-.+
T Consensus 240 l~~LPv~~ 247 (251)
T PF11932_consen 240 LLKLPVSI 247 (251)
T ss_pred HhccCCCC
Confidence 46777644
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.15 E-value=20 Score=33.76 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (516)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~---~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e 239 (516)
+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++..++..|++|...+...|..|...
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444455566666666666666555555554331 123566777777777777777777777776653
No 142
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.15 E-value=23 Score=39.02 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
|..|++++.+...-++-...+|++|+..-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777777777888887653
No 143
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.98 E-value=5.4 Score=39.62 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
...++..|+..=.++....-++|..+.+|++|+.+++.+...+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777888888888888888888888888776655544
No 144
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.82 E-value=21 Score=39.92 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAH 278 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le---~e~~~L~~eE~~~W~e~N~~q~qL~~~ 278 (516)
+|..|....++||+.|..+...|..+++... ++.+....+-++..++++...-+...+
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L 394 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKL 394 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3444445555556666666665555555542 233333444445666666555443333
No 145
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.63 E-value=39 Score=33.27 Aligned_cols=109 Identities=28% Similarity=0.342 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL-------KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~-------~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+++-...-..|...|..|+....++-.--.-..++. ++..+.+.+++++.+-+.+..+++.+|.+|+.++.+|
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333344445566666666654322211111111222 2333444455555555555556666777777666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 258 ~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
++.....=........++..++.....++..+..+.
T Consensus 144 ~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 144 QRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554444555555555555555555555554444
No 146
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.40 E-value=19 Score=39.35 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
...++.+..++.+..+....+..-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999988888888888888753
No 147
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.39 E-value=17 Score=38.37 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=7.8
Q ss_pred cCCcchHHHHHHH
Q 010177 165 VEQPLCLECMRVL 177 (516)
Q Consensus 165 IDhPLC~eC~d~L 177 (516)
=.|-+|..|.+.+
T Consensus 26 CGH~~C~sCv~~l 38 (309)
T TIGR00570 26 CGHTLCESCVDLL 38 (309)
T ss_pred CCCcccHHHHHHH
Confidence 4566666666665
No 148
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.10 E-value=48 Score=37.13 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 336 DEINAAWGQACLLLH 350 (516)
Q Consensus 336 ~EINAAwGQ~~LLL~ 350 (516)
.|++||=-=-.+-|.
T Consensus 421 ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 421 KEAEAAKASEALALA 435 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455554433333333
No 149
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.08 E-value=60 Score=37.12 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCCCCcchhHHHHHHHH---HhhcCCcccCCcchHHHHHHHHHHHHH
Q 010177 139 QPNNSGFHSTITVLKRAF---EIATSQTQVEQPLCLECMRVLSDKLDK 183 (516)
Q Consensus 139 ~~~~~~ls~~i~~l~~lF---dILSs~s~IDhPLC~eC~d~Lle~Ld~ 183 (516)
|.+...|+..|+.+-++- -+|- ....-|--+||..+|.+..+-
T Consensus 525 QE~~~~f~k~i~s~lqrsva~paL~--~~~SsP~~~E~~~lL~~a~~v 570 (741)
T KOG4460|consen 525 QETPDSFEKHIRSILQRSVANPALL--KASSAPPPEECLQLLSRATQV 570 (741)
T ss_pred hhcCCcHHHHHHHhhhhhcCChhcc--ccccCCCcHHHHHHHHHHHHH
Confidence 445556766665543321 1111 122345589999999876543
No 150
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.03 E-value=16 Score=42.10 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=12.9
Q ss_pred HHHHHHHhhcC-CcccCCcchHH
Q 010177 151 VLKRAFEIATS-QTQVEQPLCLE 172 (516)
Q Consensus 151 ~l~~lFdILSs-~s~IDhPLC~e 172 (516)
+.++|-+-|++ -+.++++-|-+
T Consensus 83 taa~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 83 TAARIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHHHHhccCCCCCCccCCc
Confidence 34455566643 55677777754
No 151
>PRK11519 tyrosine kinase; Provisional
Probab=84.91 E-value=60 Score=37.66 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
.+..+.++.+++.+.+.....|+...+.++.++
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555666666666666776666665554
No 152
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.79 E-value=62 Score=35.24 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+.+...++..+..++..++.++..|+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~ 263 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLT 263 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444455556666666666666554
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.79 E-value=36 Score=39.90 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE---~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
++.++.+.+|.+...|+.+|+++.--...+-++..+||+|--.|+.+= ++---+|-.++.++..+++|...++.|++
T Consensus 66 ~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 66 ELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777777776665544444444444443332222111 12234677888888888888888887766
Q ss_pred HH
Q 010177 291 VS 292 (516)
Q Consensus 291 ~a 292 (516)
-+
T Consensus 146 e~ 147 (717)
T PF09730_consen 146 EA 147 (717)
T ss_pred HH
Confidence 54
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.74 E-value=33 Score=31.72 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
.+|+.+...++.++..++.....+..+++.
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333
No 155
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.66 E-value=15 Score=30.74 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~ 252 (516)
..|-+.|.+........|+.|..
T Consensus 18 ~eEGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 18 MEEGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333
No 156
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.55 E-value=23 Score=29.76 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
+.+||.--..+...|..|+.+.+++..+-..+..+...|.++.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444444444333
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.11 E-value=50 Score=37.88 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 010177 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 321 (516)
Q Consensus 242 ~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTIN 321 (516)
.+.++++.|+......+.+=.+-|.+.-.++.+..+...+...-...+.....+++++.+. .|-.-++.. -+=.|.
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~R--IlEIv~ 498 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRR--ILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHH--HHHHHH
Confidence 3444444444444434444446788888888888888888888788888888889998887 343333221 133355
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHH
Q 010177 322 NFRLGRLPKIPVEWDEINAAWGQACLL 348 (516)
Q Consensus 322 GlRLGrlp~~~V~W~EINAAwGQ~~LL 348 (516)
++|==+ .||+-=|.-|--|
T Consensus 499 NI~KQk--------~eI~KIl~DTr~l 517 (594)
T PF05667_consen 499 NIRKQK--------EEIEKILSDTREL 517 (594)
T ss_pred hHHHHH--------HHHHHHHHHHHHH
Confidence 555433 4555555544444
No 158
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.02 E-value=44 Score=35.38 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE------------------~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL 275 (516)
.+.+.+..||+|-..|+.|...|. ++......++..|..++....++-.+.-.+...+..++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666555443 22333344555555555554444445555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 276 IAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 276 ~~~~ee~~sl~~q~~~a~~qL 296 (516)
..++....++-..-+-.+.+|
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 666665555544444444444
No 159
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.99 E-value=27 Score=42.82 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010177 189 TRDIEAYEACL 199 (516)
Q Consensus 189 ~~E~d~Y~~fL 199 (516)
+++...|..-|
T Consensus 514 ~~~~~~~~eel 524 (1317)
T KOG0612|consen 514 EALVRQLEEEL 524 (1317)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 160
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.90 E-value=18 Score=40.05 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
...+..++.++..++..++.++..++++|..|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444455555555566666666666766654
No 161
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.73 E-value=27 Score=39.24 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=6.3
Q ss_pred eeeeecCCeeeecc
Q 010177 309 FPIWHDGEFGTINN 322 (516)
Q Consensus 309 F~I~hdG~fGTING 322 (516)
.++-.|.--|-|=|
T Consensus 208 v~lp~d~~kgriig 221 (514)
T TIGR03319 208 VNLPNDEMKGRIIG 221 (514)
T ss_pred EEcCChhhhccccC
Confidence 34444444444443
No 162
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.66 E-value=28 Score=38.58 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 282 RDAISSKIEVSQAHL 296 (516)
Q Consensus 282 ~~sl~~q~~~a~~qL 296 (516)
+.+...++.-.+.||
T Consensus 430 ~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 163
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=83.43 E-value=49 Score=34.75 Aligned_cols=114 Identities=20% Similarity=0.215 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
.+.+.+..+....+-.+|.+|+++...|..+...+-...-++.++|++--..++.| +..+..|
T Consensus 51 ~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~F-----------------l~~~~qh 113 (289)
T PF05149_consen 51 EKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMREQEAKRRTAAEEF-----------------LQAASQH 113 (289)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 34556667777778888888888888888777777555555555555444455554 3333344
Q ss_pred HHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 010177 296 LELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 350 (516)
Q Consensus 296 LdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 350 (516)
..+|+++= .|-. =|-+ --+.++++=....|..+=-|+-.+-|.+.+.+..+
T Consensus 114 ~q~L~~~~-~n~~--~~~~-~~~~~~~~V~~~~~~l~~~~d~~~~~~~el~~~~~ 164 (289)
T PF05149_consen 114 KQRLRRCE-ENCD--RALS-CAESLEEYVQEGCPKLPKKHDKAQEALAELLLEEA 164 (289)
T ss_pred HHHHHHHH-HHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444431 1100 0111 12556666666666644449999999998877765
No 164
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.34 E-value=37 Score=33.72 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
|+.+..-++..|.+-+.....|.++|.-...+..+.. ..-...+.+...++.++.+..+|++..+.++..|.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va-------~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVA-------ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333322222 222233445556666777777777777777777776
Q ss_pred cc
Q 010177 302 TN 303 (516)
Q Consensus 302 tN 303 (516)
.+
T Consensus 183 q~ 184 (192)
T PF11180_consen 183 QA 184 (192)
T ss_pred Hh
Confidence 53
No 165
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.33 E-value=26 Score=29.44 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
....|..++++|+.+...+..+...|+.+-.+|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555554444443
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.20 E-value=42 Score=38.98 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
|-..+..++.+++.+..+++.++.+
T Consensus 305 ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 305 EAKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666555544433
No 167
>PRK12704 phosphodiesterase; Provisional
Probab=82.98 E-value=30 Score=38.94 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.9
Q ss_pred eeeeecCCeeee
Q 010177 309 FPIWHDGEFGTI 320 (516)
Q Consensus 309 F~I~hdG~fGTI 320 (516)
+++-.|.--|-|
T Consensus 214 v~lp~d~mkgri 225 (520)
T PRK12704 214 VNLPNDEMKGRI 225 (520)
T ss_pred eecCCchhhcce
Confidence 334444433444
No 168
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.95 E-value=13 Score=41.07 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.+-...+.++..++..++.+++.+.++++++|.+|+.++.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344455555555555555555555555555555544443
No 169
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.94 E-value=51 Score=40.51 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.3
Q ss_pred ecccC-CCCcc-ccchhHHHHHHH
Q 010177 384 ELFGP-VNLFW-STRYDKAMTLFL 405 (516)
Q Consensus 384 eLyg~-~~lf~-~~kFD~AM~afL 405 (516)
-.||- ++|-. +.+||.|+..|-
T Consensus 617 Gf~GRLGDLg~Id~kYDvAIsTac 640 (1293)
T KOG0996|consen 617 GFYGRLGDLGAIDEKYDVAISTAC 640 (1293)
T ss_pred ccccccccccccchHHHHHHHHhc
Confidence 34553 34444 689999998753
No 170
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.84 E-value=13 Score=41.22 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=6.0
Q ss_pred HHHHHHHH
Q 010177 399 KAMTLFLS 406 (516)
Q Consensus 399 ~AM~afL~ 406 (516)
.||.|++-
T Consensus 248 ~aMTALIG 255 (472)
T TIGR03752 248 VAMTALIG 255 (472)
T ss_pred HHHHHHhc
Confidence 68888765
No 171
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.77 E-value=38 Score=39.91 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+++|-+++...+.+-+++.-+-.+ ..+.|..+++.+=++-...+-.+++.|.+.+.|...|..-+.+-.+++.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq---~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQ---QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 344444444444443433333222 12334445555555577788889999999999988888777777777777765
Q ss_pred c
Q 010177 302 T 302 (516)
Q Consensus 302 t 302 (516)
.
T Consensus 544 L 544 (861)
T PF15254_consen 544 L 544 (861)
T ss_pred H
Confidence 3
No 172
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.74 E-value=45 Score=41.64 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEA 194 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~ 194 (516)
++.+..+++++++++..
T Consensus 232 ~~~~~~~le~l~~~~~~ 248 (1353)
T TIGR02680 232 LDEYRDELERLEALERA 248 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556555555554443
No 173
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.59 E-value=50 Score=36.47 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~-Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
.+++++.-+ +.-.++|+ |...+++++.-+.+... + .++.+++|++-.+|.+.|.++-.....+.. +..
T Consensus 136 ~~~q~esll-e~~~q~da~~qq~~~ele~~d~~~~~--d-~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~-------e~n 204 (446)
T KOG4438|consen 136 FIQQLESLL-ELRKQLDAKYQQALKELERFDEDVEE--D-EEEVKQLEENIEELNQSLLKDFNQQMSLLA-------EYN 204 (446)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 344444443 34444444 34444555432221111 1 223344555444444444444444443333 223
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCC
Q 010177 256 RFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL-ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPV 333 (516)
Q Consensus 256 ~L~~eE~-~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL-dkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V 333 (516)
.....+. .+.+..|.+.+....+++.+.+|..++-+.=..| +.|..++ ++||...+..|
T Consensus 205 ~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-------------------~~l~k~k~~~~ 265 (446)
T KOG4438|consen 205 KMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-------------------DLLQKEKSAMV 265 (446)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHH
Confidence 3332233 3778889999999999999988888776553333 1222221 23444555667
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhc
Q 010177 334 EWDEINAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 334 ~W~EINAAwGQ~~LLL~tla~~l 356 (516)
+..|=-+.+|-.+=-+.|+-.-+
T Consensus 266 ~l~~K~~iL~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 266 ELQEKAKILEEKVTNLQTIEKEL 288 (446)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHH
Confidence 77777777777776666665543
No 174
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.56 E-value=89 Score=35.05 Aligned_cols=29 Identities=10% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
++.+.....+++..|++-.+++..+.+.|
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555544
No 175
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.32 E-value=26 Score=41.26 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=14.0
Q ss_pred CCCCcchhHHHHHHHHHhhcC
Q 010177 141 NNSGFHSTITVLKRAFEIATS 161 (516)
Q Consensus 141 ~~~~ls~~i~~l~~lFdILSs 161 (516)
.-++||..+..+..+...++.
T Consensus 387 ~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred chhHHHHHHHHHHHHHHhCCc
Confidence 346688888777777666543
No 176
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.28 E-value=48 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
+..++.+|..|...|+.-..|.+...+.|..|+
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444444444444444443
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.22 E-value=54 Score=32.33 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-------KELEE---RYWQEFNNFQFQLIAHQEERDAISSKI 289 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L-------~~eE~---~~W~e~N~~q~qL~~~~ee~~sl~~q~ 289 (516)
..+..|-.+|.+-|..++.+.+++..++...+.....| ...++ ..=.++..+...+...+.||+.|..++
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555444444443322222 11121 111233444445555666666666655
Q ss_pred HHHH
Q 010177 290 EVSQ 293 (516)
Q Consensus 290 ~~a~ 293 (516)
+.+-
T Consensus 131 ~~~i 134 (201)
T PF13851_consen 131 ESAI 134 (201)
T ss_pred HHHH
Confidence 5443
No 178
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.14 E-value=22 Score=31.55 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
..|+...+.++..++.++++...+..++.+++.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555554433
No 179
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=85 Score=35.07 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRF----------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L----------------~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
..+|+++|.+...+..|++.-+.....| .+--.++-.......-+.....++...|..+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665333222222 122223333344444555666666667766666666
Q ss_pred HHHHH
Q 010177 294 AHLEL 298 (516)
Q Consensus 294 ~qLdk 298 (516)
..|+|
T Consensus 424 e~L~R 428 (521)
T KOG1937|consen 424 EALNR 428 (521)
T ss_pred HHHhh
Confidence 55543
No 180
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=82.00 E-value=23 Score=30.96 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
..|+.....+..+++.++++...+..++.+++.++.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666555444
No 181
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.96 E-value=81 Score=36.51 Aligned_cols=30 Identities=20% Similarity=0.028 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 271 FQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 271 ~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
.+.++.+++.+.+.....|+.....++.++
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655555544
No 182
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.94 E-value=62 Score=41.58 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
+++.+.+++.++.+.+.|..-|+.+.....+... -.....+.-..+..+.++.++...|+.+..-|..+|...-
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ 205 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVN 205 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555566666677777777776665432110000 0001111112344455555555555555555544444443
No 183
>PRK00106 hypothetical protein; Provisional
Probab=81.82 E-value=49 Score=37.53 Aligned_cols=18 Identities=33% Similarity=0.339 Sum_probs=7.7
Q ss_pred eeeeecCCeeeeccccCCC
Q 010177 309 FPIWHDGEFGTINNFRLGR 327 (516)
Q Consensus 309 F~I~hdG~fGTINGlRLGr 327 (516)
+++-.|.--|-|=| |=||
T Consensus 229 v~lp~demkGriIG-reGr 246 (535)
T PRK00106 229 VHLPDDNMKGRIIG-REGR 246 (535)
T ss_pred EEcCChHhhcceeC-CCcc
Confidence 34444444444443 3443
No 184
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.72 E-value=51 Score=38.39 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~ 283 (516)
++..+....++|..|..+...+.+++..+..+...+.++-++.|+..+.++.+|.+......
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556677777777777777777777777777777888888887666655544443
No 185
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.51 E-value=44 Score=37.72 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~ 286 (516)
..+|.-+|..+...+.+++..+--|++++.+-|.+....-.++..++++.-..|....-.+-+.++|+..+.
T Consensus 231 q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677788888888888888877777777666655443333433333333334444445556677776663
No 186
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.50 E-value=64 Score=39.76 Aligned_cols=10 Identities=0% Similarity=0.278 Sum_probs=5.9
Q ss_pred CccceeeEEe
Q 010177 439 DKVENYSITQ 448 (516)
Q Consensus 439 DkIgg~SIkl 448 (516)
+.|.+..|++
T Consensus 1026 ~~i~~i~v~i 1035 (1201)
T PF12128_consen 1026 EAISDIEVRI 1035 (1201)
T ss_pred cccceeEEEE
Confidence 4455666666
No 187
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=81.47 E-value=5.9 Score=43.54 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 235 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
.+.++...++.++..++. +++..|++||+.|..++.-+..++.....|..|
T Consensus 410 ~l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555554 467788899999999988877766555555444
No 188
>PRK11281 hypothetical protein; Provisional
Probab=81.34 E-value=39 Score=41.45 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
.+.|+++++++.++.....+-|+++++
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345566666666666666666666654
No 189
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.29 E-value=69 Score=34.31 Aligned_cols=19 Identities=5% Similarity=0.275 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAY 195 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y 195 (516)
.+..|..++.+++.++...
T Consensus 255 ~i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 190
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.27 E-value=1.1e+02 Score=35.16 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELEL-------KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~-------e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~ 287 (516)
+.+++.+.++++.|+++..+.+.++..... +..+.++...---+++...+.++.++|++.+..+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~ 484 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKD 484 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777887777776666655432 22222222334455666677777777765554443
No 191
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.20 E-value=50 Score=31.20 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010177 182 DKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (516)
..++..+.++.+....-...|+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LE 30 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLE 30 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHH
Confidence 3445555555555555444444
No 192
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=81.16 E-value=23 Score=30.73 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFNN 270 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~--~~W~e~N~ 270 (516)
.+-++.||+|..-|.+.|+.+|++++=..++|..+++....|-.... .||.+...
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~ 62 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHR 62 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCccccccc
Confidence 46677899999999999999999999999999999998888876665 66665543
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.15 E-value=43 Score=40.52 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=12.1
Q ss_pred CchHhHHHHHHHHhHH
Q 010177 453 QENWTKALKYTLCNLK 468 (516)
Q Consensus 453 ~e~WTkAlK~lLtNlK 468 (516)
..+=+.|..+-++|++
T Consensus 563 ~~~~~e~~~~~~~~~r 578 (1072)
T KOG0979|consen 563 KREVEEAIVEVLQNIR 578 (1072)
T ss_pred cccccHHHHHHHhccc
Confidence 3456778888888887
No 194
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.94 E-value=70 Score=35.81 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
.+..|++|....-.||.--.+-.+||+.|+.+++-.-.|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345566677766667766666677777777776655443
No 195
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.92 E-value=6 Score=35.83 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.3
Q ss_pred cCCCceeeeecCCeee
Q 010177 304 VLNDAFPIWHDGEFGT 319 (516)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (516)
+|.+=|||-+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 6999999987 57775
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.90 E-value=88 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEA 194 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (516)
+.|+..+-.+++.+.+|..+
T Consensus 403 ~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555544
No 197
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=80.86 E-value=26 Score=39.98 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=64.0
Q ss_pred HHHHhhcC-----CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc---cccCC-HHHH-HHHHH
Q 010177 154 RAFEIATS-----QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA---CLQRLEGEA---RDVLS-EADF-LKEKL 220 (516)
Q Consensus 154 ~lFdILSs-----~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~---fL~~L~~~~---~~~~s-ee~l-~~e~~ 220 (516)
.+|+-||+ -.+||-| +|+| .|-++++.+..|.-.... .|.-++.+- .+.++ +.++ ..|++
T Consensus 274 sl~eels~aGs~liGdvdeg-----Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 274 SLFEELSSAGSGLIGDVDEG-----ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred chhhhhhhccccccccccch-----hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHH
Confidence 56666654 3455554 4555 677777777666554333 222222110 01122 2222 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE-------------LKSKRFKELEE-RYWQEFNNFQFQLIAHQEERD 283 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le-------------~e~~~L~~eE~-~~W~e~N~~q~qL~~~~ee~~ 283 (516)
..++-..+|++.|.+||.|...+.++..+.. ++.+++..-|- +...++|.++-.|.++|+...
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4444444455555555555555554444432 23334444443 778899999999998877654
No 198
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=80.77 E-value=34 Score=37.91 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 010177 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 350 (516)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk-tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 350 (516)
+.+..-++.+|+..+.|+..|..-.++|+| .+-+=-+||.-|... +..+.-.-=|--.|+|.+.-+|.
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss-----------lDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS-----------LDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc-----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888899999999999975 455556888877654 22323333455667777655543
No 199
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.72 E-value=82 Score=37.79 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=7.5
Q ss_pred eccccCCCCC
Q 010177 320 INNFRLGRLP 329 (516)
Q Consensus 320 INGlRLGrlp 329 (516)
||.++|-+-.
T Consensus 563 i~ql~l~~~~ 572 (980)
T KOG0980|consen 563 INQLELDSSA 572 (980)
T ss_pred HHHhhccccc
Confidence 8888887653
No 200
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=80.49 E-value=14 Score=40.29 Aligned_cols=88 Identities=16% Similarity=0.304 Sum_probs=45.8
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 162 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 162 ~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~ 241 (516)
+|.+.--+...-....++.|+.+++.+..+.......+.++++.........+..+...++.+....+.+++++++.+..
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334445556777777777777777777777666542211111223334444555555555555555555555
Q ss_pred HHHHHHHH
Q 010177 242 EVNAELKE 249 (516)
Q Consensus 242 ~l~~El~~ 249 (516)
++.++++.
T Consensus 400 ~l~~~l~~ 407 (451)
T PF03961_consen 400 ELKEELER 407 (451)
T ss_pred HHHHHHHh
Confidence 44444433
No 201
>PRK11519 tyrosine kinase; Provisional
Probab=80.49 E-value=18 Score=41.82 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHH----------HHHHHHHHHHHHHHHHH-------HHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD----------FLKEKLKIEEEERKLEA-------AIEE 235 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s-ee~----------l~~e~~~Le~EE~~L~~-------eL~~ 235 (516)
+...++.|++|+..+.++.+.-+.-|+..+.+.. ..+ +.+ +..++.+++.++..|.. .+..
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~-~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~ 343 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD-SVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRT 343 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 3445666666666666666665555555543321 111 111 11222222222222221 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 236 LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
+..+.+.+++++..++.+...+.+.|. +|..++++....++-...+..+++.+.
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~lp~~e~----~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAMPKTQQ----EIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555666666655555555553 444555555555555556666655554
No 202
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.49 E-value=65 Score=32.08 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
....||++-+.|.++-+.+|+|...|.+++..|+.+-..+
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344555555555555555555555555555555444433
No 203
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.48 E-value=26 Score=36.48 Aligned_cols=153 Identities=23% Similarity=0.329 Sum_probs=83.2
Q ss_pred CCcchhHHHHHHHH----HhhcC---CcccCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcccccc--CC
Q 010177 143 SGFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS 211 (516)
Q Consensus 143 ~~ls~~i~~l~~lF----dILSs---~s~IDhPLC~eC~d~Lle~Ld~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~s 211 (516)
.-..+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|..|+.-.-+. +.
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 45667788889999 78865 45555557889999999999763 3333 334444445555555321110 00
Q ss_pred --HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010177 212 --EADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (516)
Q Consensus 212 --ee~l~~------e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~ 283 (516)
-+++.+ ..+..+.+.+.....|+..+.|.+....++.+.+++.+++.+.. .+..-.|.+++.++-
T Consensus 173 ~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 173 SKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 011111 11123333333444444444444444444444444444443332 334455677777777
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010177 284 AISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 284 sl~~q~~~a~~qLdkLrkt 302 (516)
.+...+.++....++..--
T Consensus 246 ~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 246 RLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7777777777777766443
No 204
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.40 E-value=10 Score=32.32 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---------~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
.+..++..++.+......-++.|..-..+ .+-..+...-...|+...+.+..++..++++...+..++.++
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555432111 000111233345577777777777888887777777777777
Q ss_pred HHHHH
Q 010177 251 ELKSK 255 (516)
Q Consensus 251 e~e~~ 255 (516)
+.++.
T Consensus 96 ~~~l~ 100 (106)
T PF01920_consen 96 KKKLY 100 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 205
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.36 E-value=56 Score=35.66 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
...+.|++|+..++++.+.-+.-|...+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677666666666555555444
No 206
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.30 E-value=71 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=12.5
Q ss_pred eccccCCCCCCCCCChH
Q 010177 320 INNFRLGRLPKIPVEWD 336 (516)
Q Consensus 320 INGlRLGrlp~~~V~W~ 336 (516)
|+...-|.-|..||+..
T Consensus 244 v~~~~tG~~~P~~~~fE 260 (261)
T cd07674 244 AESKGTGKERPGPVGFE 260 (261)
T ss_pred HHhCCCCCCCCCCCCCC
Confidence 66677788888887754
No 207
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.25 E-value=64 Score=39.76 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=6.8
Q ss_pred CccceeeEEec
Q 010177 439 DKVENYSITQS 449 (516)
Q Consensus 439 DkIgg~SIkl~ 449 (516)
|.+-|++|.+.
T Consensus 581 dslyGl~LdL~ 591 (1201)
T PF12128_consen 581 DSLYGLSLDLS 591 (1201)
T ss_pred cccceeEeehh
Confidence 46667766663
No 208
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.23 E-value=68 Score=33.68 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCcchhHHHHHHHHHhhcCCcccCCcchHHHH
Q 010177 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECM 174 (516)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~ 174 (516)
+-+++.|.-+...=++.|.-++--..+|.=-.
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls 84 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLS 84 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 44788888887777777777777777775433
No 209
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.14 E-value=24 Score=30.70 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
...++..|-++.+.+..+++.|..++..+.+++..+...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 455667778888888888888888888888888877653
No 210
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.00 E-value=76 Score=35.91 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred CcchhHHHHHHHHHhhcCCcc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------
Q 010177 144 GFHSTITVLKRAFEIATSQTQ-VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-------------- 208 (516)
Q Consensus 144 ~ls~~i~~l~~lFdILSs~s~-IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-------------- 208 (516)
.|..++..+..-|+-...-+. =|| .=++-++..++.++..++...+.-=..++.++..-++
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~----~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDY----LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 355555555555544332111 133 2355566667777777766666544444443321110
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010177 209 ---VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 209 ---~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl 285 (516)
.+...++.+++..+++........|..| +..++...+..++.++..|-+.=++=-..++.....+..+.+-...+
T Consensus 241 ~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~ 318 (560)
T PF06160_consen 241 EGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHA 318 (560)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1222345556666666665555555444 22333334444444444442211111123333344444444555555
Q ss_pred HHHHHHHHHHHHHHhhc
Q 010177 286 SSKIEVSQAHLELLKRT 302 (516)
Q Consensus 286 ~~q~~~a~~qLdkLrkt 302 (516)
..+.......+++|+..
T Consensus 319 ~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 319 KEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666677777654
No 211
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.79 E-value=63 Score=31.56 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
...+..++..|+++..++..++.+++.+.+.++..+++. .+..-..+++|.+-++.+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777777777777776666655554433221 1122233455666665555555555543
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.72 E-value=10 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
.+..+...|.+++.+++++...+..|+..|
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 213
>PRK06798 fliD flagellar capping protein; Validated
Probab=79.48 E-value=7.3 Score=42.70 Aligned_cols=54 Identities=7% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
+++.++.+...++.+++.++. +++..|++||+.|+.++..+..++.+...+.+.
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555554 366788899999999988877766555444433
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.41 E-value=50 Score=33.82 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=6.7
Q ss_pred HHHHHHHhhcC
Q 010177 151 VLKRAFEIATS 161 (516)
Q Consensus 151 ~l~~lFdILSs 161 (516)
...+.|+-|++
T Consensus 74 LA~kf~eeLrg 84 (290)
T COG4026 74 LAEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHHH
Confidence 34566777765
No 215
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.38 E-value=74 Score=35.80 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le---~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
...+..+..-.++-...++++-...+++.+++..++ .+.++|+++.++++..+..+-.+|... |.....+ ..
T Consensus 307 e~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---R~~~a~~--l~ 381 (563)
T TIGR00634 307 EERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---RRKAAER--LA 381 (563)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HH
Confidence 333444444444433455666666666666666654 345555666666666666665554433 2222222 22
Q ss_pred HHHHHHHhhcccCCCceeeee
Q 010177 293 QAHLELLKRTNVLNDAFPIWH 313 (516)
Q Consensus 293 ~~qLdkLrktNV~Nd~F~I~h 313 (516)
..--..|+..+.-+..|+|..
T Consensus 382 ~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 382 KRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHhCCCCCcEEEEEE
Confidence 233466777788888998865
No 216
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.72 E-value=52 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
++.|+.+++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555554
No 217
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=10 Score=39.65 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.0
Q ss_pred ccCCcchHHHHHHHH
Q 010177 164 QVEQPLCLECMRVLS 178 (516)
Q Consensus 164 ~IDhPLC~eC~d~Ll 178 (516)
.=-|++|..|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 567888888888873
No 218
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.44 E-value=31 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
.+.|+.++..+.-+++.+..-|+.++
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666554
No 219
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.37 E-value=24 Score=36.19 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 010177 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 329 (516)
Q Consensus 278 ~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp 329 (516)
+.+.++++-|.+..+.++.-...-.-|-+++ .|.+.|+|-||||-|+ ..|
T Consensus 137 ~~~dl~~viNeL~~sGAEaIsIn~~RI~~~t-~Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 137 HDDDLQAVINELNISGAEAISINGQRIGSNT-TIRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred CHHHHHHHHHHHHhccchheeECCEEeecce-EEEecCCeEEECCeec-CCC
Confidence 4455555555555555554444444344443 3666789999999999 443
No 220
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.13 E-value=25 Score=34.35 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
++....+|.++++.++.+.+++.+++..+
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555444444444444
No 221
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.12 E-value=77 Score=31.58 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.++...+|.|-..|..++..|+.+...+..+...++....+|
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3444455666666666666666666666666666666555555
No 222
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.88 E-value=81 Score=37.03 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=14.3
Q ss_pred CCCChHH----HHHHHH--HHHHHHHHHH
Q 010177 331 IPVEWDE----INAAWG--QACLLLHTMC 353 (516)
Q Consensus 331 ~~V~W~E----INAAwG--Q~~LLL~tla 353 (516)
..-.|.- .|--+| |+.|=...+-
T Consensus 656 ~~tawereE~~l~~rL~dSQtllr~~v~~ 684 (961)
T KOG4673|consen 656 AATAWEREERSLNERLSDSQTLLRINVLE 684 (961)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4456765 777888 7766544433
No 223
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.87 E-value=12 Score=40.79 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
.++.++|.++++++..+.+++++.|..++.... ......+.-..+..+......+.++...+..++...+.+++++
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555555555555555555443211 1111112223445555555666666667777777777777766
No 224
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.76 E-value=1e+02 Score=34.53 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYE 196 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~ 196 (516)
+.++...+..+.|...|.
T Consensus 224 ~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 333334444455555566
No 225
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.66 E-value=1e+02 Score=32.65 Aligned_cols=33 Identities=27% Similarity=0.109 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
+......++.++++++..+...++....+...+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555444444433
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.51 E-value=35 Score=31.17 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
+.+.+.-|+...+.|.+.++.++++...+.+++..+.....++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555556666666666666665555555544443
No 227
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.46 E-value=1.1e+02 Score=34.41 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 264 ~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
.=......+..|....++.....+--..+..++.-|.
T Consensus 405 ~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~ 441 (522)
T PF05701_consen 405 TKAAIKTAEERLEAALKEAEAAKASEALALAEIKALS 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444444444444443
No 228
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.38 E-value=81 Score=35.04 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhc
Q 010177 191 DIEAYEACLQRLEG 204 (516)
Q Consensus 191 E~d~Y~~fL~~L~~ 204 (516)
|-+..+..+-+++.
T Consensus 280 e~rrhrEil~k~eR 293 (502)
T KOG0982|consen 280 EERRHREILIKKER 293 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.31 E-value=38 Score=33.13 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
.|...+.+++++|+++.+++.+++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666655544
No 230
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.19 E-value=1.2e+02 Score=37.54 Aligned_cols=16 Identities=31% Similarity=0.071 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHHH
Q 010177 333 VEWDEINAAWGQACLL 348 (516)
Q Consensus 333 V~W~EINAAwGQ~~LL 348 (516)
..--|+|.+++|-..=
T Consensus 261 ~~~~~~N~~Ls~~L~~ 276 (1109)
T PRK10929 261 VAQFKINRELSQALNQ 276 (1109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556788888876543
No 231
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.05 E-value=48 Score=34.47 Aligned_cols=28 Identities=7% Similarity=0.340 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
+..+-....+.|..++.+.+.|+..|+.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455554444444444433
No 232
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.91 E-value=48 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 010177 279 QEERDAISSKI 289 (516)
Q Consensus 279 ~ee~~sl~~q~ 289 (516)
++.+.+|..++
T Consensus 66 qerLr~LLGkm 76 (79)
T PRK15422 66 QERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 233
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=76.84 E-value=62 Score=36.75 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeeeec
Q 010177 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 314 (516)
Q Consensus 242 ~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV-------~Nd~F~I~hd 314 (516)
.+...++.++..+...+..-.++-..++.+..+-.+.++.+..+..++.-... .+.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR---~mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR---YMEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCcHHHHHHHHhhhhH
Confidence 34445555555555555555556666666666555555555444444444332 3445554 3355666664
Q ss_pred CCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 010177 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (516)
Q Consensus 315 G~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 355 (516)
=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122 3343 5889999999999998888766543
No 234
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.77 E-value=51 Score=31.31 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc--ccC----------------------------CHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE---AR--DVL----------------------------SEADFLKEKLK 221 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~---~~--~~~----------------------------see~l~~e~~~ 221 (516)
+..++.|+.++..+..-+..++.+++.|+.- .. +.+ -+.++.+..+-
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 3456777777777777777777777666521 10 000 01223344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
|++..++|.+.++.++.+.+++.+.+..++.+..++..
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666665555554443
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.66 E-value=16 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.+|+.+....-..+...|++.|+...++.++|..|+.+.+++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555666677777777777777777776665544
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.61 E-value=1e+02 Score=32.20 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 010177 192 IEAYEACL 199 (516)
Q Consensus 192 ~d~Y~~fL 199 (516)
|.+|..+|
T Consensus 124 RS~yLe~L 131 (269)
T PF05278_consen 124 RSYYLECL 131 (269)
T ss_pred HHHHHHHH
Confidence 33455544
No 237
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.55 E-value=1.5e+02 Score=34.84 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 265 W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
|.+.-.+......+++++++|.+..+..+..+..|
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677778899999888877777655544
No 238
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.31 E-value=62 Score=29.53 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010177 183 KEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~ 203 (516)
.++++.....+.|...++.|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544444
No 239
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=76.28 E-value=80 Score=37.77 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee
Q 010177 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 312 (516)
Q Consensus 258 ~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~ 312 (516)
-..|+.|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|...
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 3455556666677777777778888888888887776666655555555555543
No 240
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.14 E-value=1.5e+02 Score=35.38 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
.+...|..+++.|..+.++....+
T Consensus 336 ~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 336 QEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333433333333333333
No 241
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.05 E-value=75 Score=38.32 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.9
Q ss_pred hHHHHHHHHhHHHHHHHHh
Q 010177 457 TKALKYTLCNLKWALFWFV 475 (516)
Q Consensus 457 TkAlK~lLtNlKwlLawv~ 475 (516)
..|+.-|++++-|+.+-+.
T Consensus 836 sEa~edl~~~i~~l~~~~~ 854 (1243)
T KOG0971|consen 836 SEALEDLRKHITWLVAVLQ 854 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777888888765543
No 242
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.72 E-value=86 Score=30.93 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
..+|..+|..++...++-+..+..|+.+ ++-....|=++++.-.....+.+.+...+...+.....
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~---leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQ---LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 23333344444444444444444444444444444433
No 243
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.44 E-value=85 Score=37.35 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 010177 402 TLFLSCLKD 410 (516)
Q Consensus 402 ~afL~cl~q 410 (516)
...|+.+.+
T Consensus 602 t~~lel~~~ 610 (1118)
T KOG1029|consen 602 TKALELIGE 610 (1118)
T ss_pred HHHHHHHhh
Confidence 333443333
No 244
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.31 E-value=31 Score=35.25 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV 304 (516)
++.-|+....++++|+.....++...++++++|++-|+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777777777777888888888776
No 245
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.05 E-value=95 Score=31.10 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
.++..|...+.+.|..+|+....+-+.-..+
T Consensus 72 ~~~~~erdq~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 72 QKLLKERDQAYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444433333333
No 246
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.01 E-value=1.1e+02 Score=36.36 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYE 196 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~ 196 (516)
+-.|++||+.+....-++.
T Consensus 26 ~~~lk~~l~~~~~~~~~~e 44 (769)
T PF05911_consen 26 AASLKQQLEAATQQKLALE 44 (769)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3446666666655444433
No 247
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.92 E-value=1.4e+02 Score=36.43 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~ 197 (516)
..|.++.++++..+..-..
T Consensus 411 KnLs~k~e~Leeri~ql~q 429 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQ 429 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHH
Confidence 3344455555444444333
No 248
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.88 E-value=46 Score=30.24 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
+++..+-+..+|..+|++...+...+.+++.+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444433
No 249
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.49 E-value=53 Score=27.92 Aligned_cols=6 Identities=50% Similarity=1.027 Sum_probs=2.7
Q ss_pred HHHHHH
Q 010177 262 ERYWQE 267 (516)
Q Consensus 262 ~~~W~e 267 (516)
...|++
T Consensus 62 ~~~WQe 67 (79)
T COG3074 62 QNGWQE 67 (79)
T ss_pred HHHHHH
Confidence 345543
No 250
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.42 E-value=84 Score=30.18 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
+.++.|.+.|...+..|+.+...+...++.+......+++.|.+.-++++.+.-.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 3456666667777777777776666666665555566666666655566655443
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.39 E-value=85 Score=36.34 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=10.4
Q ss_pred CCCCCCC-ChHHHHHHHHHH
Q 010177 327 RLPKIPV-EWDEINAAWGQA 345 (516)
Q Consensus 327 rlp~~~V-~W~EINAAwGQ~ 345 (516)
..|..|+ +..=.+.+.|-+
T Consensus 420 ~~P~~P~~P~~~~~l~~~~~ 439 (754)
T TIGR01005 420 SVPSEPYFPKKGPIVGLAAV 439 (754)
T ss_pred cCCCCCCCCchHHHHHHHHH
Confidence 3455555 445556666543
No 252
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.31 E-value=1.2e+02 Score=32.01 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
++.+.+..+-..+..++.+|-.+-.+.-.+|..+-.+...+...=..|...+-.+....-++.++.+.+.+.|.-...
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555544555555544555555555555555555555555555444443
No 253
>PRK10869 recombination and repair protein; Provisional
Probab=74.23 E-value=1.6e+02 Score=33.33 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 010177 232 AIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~---e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~ 308 (516)
.++++-.-.+++.+|+..++. ....|+++.++.+..+...-.+|. +.|...-.++.. .=...|+..+.=+..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l~~--~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKELAQ--LITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHcCCCCcE
Confidence 445555555556666655543 344444444444444444443333 233322222222 224667888888999
Q ss_pred eeeee
Q 010177 309 FPIWH 313 (516)
Q Consensus 309 F~I~h 313 (516)
|+|..
T Consensus 393 f~v~~ 397 (553)
T PRK10869 393 FTIDV 397 (553)
T ss_pred EEEEE
Confidence 99886
No 254
>PF15294 Leu_zip: Leucine zipper
Probab=74.01 E-value=79 Score=33.11 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--------------------KELEERYWQEFNNFQFQ 274 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L--------------------~~eE~~~W~e~N~~q~q 274 (516)
+.+|+.+|.+|-.+|...|..+|++......|-.+++.++..+ .++|...-..-+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 5678888888888888888888765554444444444333333 23455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 275 LIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~ 293 (516)
+........+|...+..+.
T Consensus 210 ~~d~~~~~k~L~e~L~~~K 228 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCK 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444433
No 255
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.93 E-value=1.2e+02 Score=36.43 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhcCCcccCCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 010177 147 STITVLKRAFEIATSQTQVEQPLCLECMRVL-----SDKLDKEVDDVTRDIEAYEACL 199 (516)
Q Consensus 147 ~~i~~l~~lFdILSs~s~IDhPLC~eC~d~L-----le~Ld~qle~~~~E~d~Y~~fL 199 (516)
.+.+++.+.- -||++.+.=-|+=..|+..= ++.+-+++++..++.++...-|
T Consensus 226 ~tq~vl~ev~-QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 226 NTQKVLKEVM-QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHHHH-HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 46777777789988997532 3344445555555555544433
No 256
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.70 E-value=93 Score=35.96 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 010177 402 TLFLSCLKDFAEF 414 (516)
Q Consensus 402 ~afL~cl~q~~e~ 414 (516)
..|++++.+.++-
T Consensus 421 ~~f~~~~~e~adl 433 (617)
T PF15070_consen 421 SRFMDLMEEKADL 433 (617)
T ss_pred HHHHHHHHHHhhH
Confidence 3577777766543
No 257
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.07 E-value=1e+02 Score=30.65 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~ 278 (516)
+.....|...|.-...+..++.........|...|+.+-...=..++.++.++..+
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666667766666666777777665555555555555554443
No 258
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=72.99 E-value=59 Score=34.15 Aligned_cols=27 Identities=11% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 274 QLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 274 qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+|..-+-....++.|+..+..++++|.
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566666666655554
No 259
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=72.93 E-value=12 Score=41.67 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 236 LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
+.++...++.+++.+.. +|+..|++||..||.+...+...+.....|..+
T Consensus 427 l~~~i~~l~~~i~~~~~---rl~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~ 476 (483)
T COG1345 427 LNKQIKSLDKDIKSLDK---RLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQ 476 (483)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555553 478889999999999987766655544444443
No 260
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.91 E-value=54 Score=27.30 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+.+.+..+|...-.+...|....+....+|+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555555565544
No 261
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=72.79 E-value=79 Score=35.72 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 010177 172 ECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 203 (516)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~-----Y~~fL~~L~ 203 (516)
|=....+..|.+++++++.|... |..|...+.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777776666543 666665554
No 262
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=72.75 E-value=1.5e+02 Score=35.78 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL--EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e--E~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+|...|++.++.+..+..++.+++..+..++..|+.- =...-+.+..++.++.+.-.+-.++..-...+.++|..+++
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455555666566666666666555555310 01222344445555555555555666555666666666555
Q ss_pred cc---cCC---CceeeeecCCeeeec
Q 010177 302 TN---VLN---DAFPIWHDGEFGTIN 321 (516)
Q Consensus 302 tN---V~N---d~F~I~hdG~fGTIN 321 (516)
.- |++ ++|.==.||.|.+|+
T Consensus 854 ~rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 854 RRLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hhchHHHHHHHHHHhhccCCceeeee
Confidence 32 222 455544789999887
No 263
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=72.66 E-value=32 Score=33.39 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~N 306 (516)
.+.+.++.|+.+.+.+.++|.+|+.....+.+.= -..||+.|..|.+.+..++......+.++...++--
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v---------vsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDV---------VSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3445567777788888888888877666665432 135677888888888888888888888888766544
No 264
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=72.48 E-value=99 Score=30.17 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 251 ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 251 e~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
+.+...++..=.++=.....++.++..++.++..+..+.....
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433334444444444444444444444444444333
No 265
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=97 Score=35.55 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 270 NFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
+|+.+++..-++.++|.+-++.+....+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666655544444
No 266
>PLN02678 seryl-tRNA synthetase
Probab=72.15 E-value=34 Score=37.90 Aligned_cols=91 Identities=14% Similarity=0.295 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
...++.++.++.+++..+++.|..++.++.++|..+....++.+ ..-.+...+..++..++++++.++.++....
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~----~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~- 105 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDAT----ELIAETKELKKEITEKEAEVQEAKAALDAKL- 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35677788888999999999999999999998877532221111 1222334444455555555555555444332
Q ss_pred HHHHHhhcccCCCceeeeec
Q 010177 295 HLELLKRTNVLNDAFPIWHD 314 (516)
Q Consensus 295 qLdkLrktNV~Nd~F~I~hd 314 (516)
++==|+...-=+++.|
T Consensus 106 ----~~iPNi~~~~VP~G~d 121 (448)
T PLN02678 106 ----KTIGNLVHDSVPVSND 121 (448)
T ss_pred ----HhCCCCCCccCCCCCC
Confidence 2223555555455543
No 267
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=72.13 E-value=60 Score=27.46 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~--~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+-.-+++...+.++......|...|..+..++.++.+.+.. .+..-- +...|..+..+...+..++...+..+++|+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666666666666666666666665555543321 222222 555666666667777777777777777765
No 268
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.09 E-value=1.1e+02 Score=32.87 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
+....+.|+.|+.++.++.+..+.-|+..+.+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888877777777777666543
No 269
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.05 E-value=23 Score=34.03 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
++.+++.+|++++++|.++.+.+++.++++.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555444443
No 270
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.94 E-value=60 Score=38.43 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 337 EINAAWGQACLLLHTMC 353 (516)
Q Consensus 337 EINAAwGQ~~LLL~tla 353 (516)
||-||=|-++=.=-||+
T Consensus 734 EiaaAA~KLAECQeTI~ 750 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIA 750 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888877766555555
No 271
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=71.84 E-value=53 Score=32.74 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.0
Q ss_pred HHHHHHhhcC
Q 010177 348 LLHTMCQYFR 357 (516)
Q Consensus 348 LL~tla~~l~ 357 (516)
+|.-+.++|-
T Consensus 137 iLt~viQ~LP 146 (228)
T PRK06800 137 ILTGIVQTLP 146 (228)
T ss_pred HHHHHHHHcc
Confidence 3333444443
No 272
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.68 E-value=2e+02 Score=34.30 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
.++.+.+...+...+..+......+...+.
T Consensus 166 l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 166 LEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666655
No 273
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=71.56 E-value=77 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~ 271 (516)
..++.||+.++.+.++- .+........+-+-|-++++.+..|
T Consensus 145 ~~~eeElr~Ae~kfees---~E~a~~~M~~i~~~e~e~~~~L~~l 186 (215)
T cd07593 145 SRLEEELRRAKAKYEES---SEDVEARMVAIKESEADQYRDLTDL 186 (215)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33444444444443332 2233333334444445566655555
No 274
>PF13514 AAA_27: AAA domain
Probab=71.47 E-value=97 Score=37.82 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Q 010177 330 KIPVEWDEINAAWGQACLLLHTMC 353 (516)
Q Consensus 330 ~~~V~W~EINAAwGQ~~LLL~tla 353 (516)
...|+..+...+----+.|-.-||
T Consensus 1018 G~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1018 GERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred CeEeeHHHhCHHHHHHHHHHHHHH
Confidence 356788888777655444444444
No 275
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=71.38 E-value=1.1e+02 Score=33.90 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010177 243 VNAELKELELKSKRFKELEERYWQEFNNFQF 273 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE~~~W~e~N~~q~ 273 (516)
+.+++.+.+++..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677788888889999999999987777554
No 276
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=71.36 E-value=33 Score=37.88 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEA---CLQRLEGEA-RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~---fL~~L~~~~-~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
+++|+.+-+.+++..|.=.. --..+.+.. .+..+.+.+..-+++|..|-.+|+..|...+++..+-
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666655222 112222211 1111122333345667777777777777766665543
No 277
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=71.32 E-value=40 Score=27.77 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~ 266 (516)
++.+.+.+++...+++.+.+..+|+..+..+.++..+..++.+++.--.=.|+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777788888877777777777776666655544444
No 278
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.26 E-value=15 Score=38.70 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 010177 341 AWGQACLLLHTMCQYFRP 358 (516)
Q Consensus 341 AwGQ~~LLL~tla~~l~~ 358 (516)
-.|-++|.-.+|+ |+|+
T Consensus 310 l~GD~llaaa~is-Y~G~ 326 (344)
T PF12777_consen 310 LVGDSLLAAAFIS-YLGP 326 (344)
T ss_dssp HHHHHHHHHHHHH-CCCC
T ss_pred cHHHHHHHHHHHH-HcCC
Confidence 3455444444443 6663
No 279
>PRK07737 fliD flagellar capping protein; Validated
Probab=71.17 E-value=16 Score=40.65 Aligned_cols=51 Identities=14% Similarity=0.383 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 235 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
.|.++...++.++..++.+ ++..|++||+.|+.++.-+..++.+...|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~r---l~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDR---LKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666653 56778899999999988777665555444433
No 280
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.04 E-value=6.2 Score=45.53 Aligned_cols=125 Identities=24% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-see~------l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
..++..|+++..-+.+||+.|+.-|+....+..... +..+ +..-.+.++....++..+|..++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345677888888889999999998887765432110 1000 000011122222233334444544443333322
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 248 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 248 ~~le~e~~~L~~eE---~----~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
..++.+...+.... . .+=..++.++.++..++.++..+..++.....+|+++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333322111 1 1345677788888888888888888888888888874
No 281
>PF13166 AAA_13: AAA domain
Probab=70.91 E-value=2e+02 Score=32.90 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=16.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 010177 326 GRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (516)
Q Consensus 326 Grlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (516)
|..|....+.-|=|+ +-|+++|+.
T Consensus 494 ~~~~~~~LSEGEk~~-----iAf~yFla~ 517 (712)
T PF13166_consen 494 GSKPAKILSEGEKRA-----IAFAYFLAE 517 (712)
T ss_pred CCcccCccCHHHHHH-----HHHHHHHHH
Confidence 556677788888753 556666664
No 282
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=70.76 E-value=1e+02 Score=32.76 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
++-+.+++++..|+.|-.+|+-|-++..++..++.+++...+++
T Consensus 256 eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 256 EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777788888888777777777777776665554
No 283
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.71 E-value=1.2e+02 Score=35.16 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Q 010177 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (516)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL-~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~ 231 (516)
+++--||+..+..|. +|...|- .+-.-+++...+- ++-| ..++... .-..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~-~ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALR-ALSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHH-HHHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 466678999999986 4555443 2333444432222 1111 1111110 00124566666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
.+..+..-++.+..++..-......|-+.-++|-.+... +....+-..+....|...+..++.|+.
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~----le~r~kii~~Fl~~fqLs~~E~~~L~~ 151 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQ----LELRKKIINAFLDNFQLSSEELDLLTE 151 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccChHHHHHHhc
Confidence 777666666666665555444333332222222221111 111222233444556666666666666
No 284
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=70.63 E-value=13 Score=40.00 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 315 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG 315 (516)
+.++++++++++.++..+..-++.=...-++..++.|.+..
T Consensus 275 ~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 275 LKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 33444555555555555555555555556788888887765
No 285
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.53 E-value=85 Score=28.57 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNA 245 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~ 245 (516)
|+.+-....+.+.+|+.+..++.+
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443333
No 286
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.47 E-value=14 Score=41.16 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.4
Q ss_pred eeeeecCCCceEEe
Q 010177 364 IKIIPMGSYPRIMD 377 (516)
Q Consensus 364 YkLvPmGS~SkI~~ 377 (516)
.--+|-|||.+-.-
T Consensus 211 ~~YiPsgSf~~avl 224 (475)
T PRK13729 211 LPYIPSGSFAKAML 224 (475)
T ss_pred CceeCCCCeEEEEE
Confidence 44679999987653
No 287
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=70.44 E-value=14 Score=42.81 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~ 289 (516)
....|+++...++.++++++. +|+..|++||+.|..++..+..++.....|.+++
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEK---KLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666654 4778899999999999888777655554444443
No 288
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.38 E-value=1.2e+02 Score=35.37 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY---------------WQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~---------------W~e~N~~q~qL~~~~ee~~sl 285 (516)
-|+++...+...|++|.+++++-.+|+.++..+++.+..+.... .+..+.|+-+|.++++|...=
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777888888888888888888877777775544433 345556666666666666544
Q ss_pred HHHHHHHHHHHHHH
Q 010177 286 SSKIEVSQAHLELL 299 (516)
Q Consensus 286 ~~q~~~a~~qLdkL 299 (516)
..++..-...+..|
T Consensus 180 lekv~~~~~~I~~l 193 (660)
T KOG4302|consen 180 LEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHHHHHH
Confidence 43333333333333
No 289
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.35 E-value=1.4e+02 Score=31.15 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
|+.+|.++...++++.+-|++||.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 290
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.28 E-value=87 Score=28.60 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~ 291 (516)
+..++.+-..+..++..|..+.......+...+. ..+.++..|=.+.+.++..+.++.++..-|..|++.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444443333332222 234455556666666666666666666666666653
No 291
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=70.19 E-value=83 Score=33.03 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 010177 279 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 322 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTING 322 (516)
+.+.+.+.+++..++.+|+.++..- =+....=-.||.+..++-
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~~~l-~~~~I~AP~dG~V~~~~~ 199 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAKTNL-DYTRIVAPMAGEVTQITT 199 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCEEECCCCcEEEeeec
Confidence 3444455555555555555544321 011233334666665553
No 292
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.05 E-value=1.2e+02 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 245 ~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
..+..++.+...+...-.++=..+..++.++.++...+..|.++...++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555556666666666666666666555544
No 293
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.05 E-value=54 Score=28.87 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
.-++.....+..+++.++++...+.+++..++...
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555443
No 294
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.05 E-value=63 Score=26.90 Aligned_cols=6 Identities=50% Similarity=0.855 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010177 280 EERDAI 285 (516)
Q Consensus 280 ee~~sl 285 (516)
+|.+.+
T Consensus 54 ~E~e~L 59 (69)
T PF14197_consen 54 EENEAL 59 (69)
T ss_pred HHHHHH
Confidence 333333
No 295
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.59 E-value=40 Score=27.99 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
.|+..-..|....++|..|...+.+++..++.|.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555444444433
No 296
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=69.56 E-value=1.3e+02 Score=30.25 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
..+..|..+.++..+++-+....+.|..-++.|-...-.+.-++..+.+.+.....+-+++...+.+|.+
T Consensus 103 raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 103 RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 3344455555666666666666666666666666666666666666666666666566666655555554
No 297
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=69.53 E-value=2e+02 Score=32.36 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 010177 149 ITVLKRAFEIA 159 (516)
Q Consensus 149 i~~l~~lFdIL 159 (516)
+.-+..+|+-+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455555444
No 298
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=69.50 E-value=83 Score=28.05 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l---~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
+....+++.+...+..|..-+..... ..++...+ ..=+..|..........+..++.+.+....++.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~---~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVG---AGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443332221 12333332 2334567777777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhH
Q 010177 256 RFKELEERYWQEFNN 270 (516)
Q Consensus 256 ~L~~eE~~~W~e~N~ 270 (516)
.++.+.++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777655555543
No 299
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.47 E-value=1.5e+02 Score=31.13 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=17.1
Q ss_pred CCccccchhHHHHHHHHHHHHHH
Q 010177 390 NLFWSTRYDKAMTLFLSCLKDFA 412 (516)
Q Consensus 390 ~lf~~~kFD~AM~afL~cl~q~~ 412 (516)
+.+|-++|+.+-.++++.+.+-.
T Consensus 260 ~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888888888776643
No 300
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=69.41 E-value=77 Score=36.80 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL---KIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~---~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
|..|++.--..+...+.|+..-...- ...||-++.|+. .||...-+|..|+.+|.-.+..+
T Consensus 130 LteqVeaQgEKIrDLE~cie~kr~kL--natEEmLQqellsrtsLETqKlDLmaevSeLKLkltal 193 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETCIEEKRNKL--NATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTAL 193 (861)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhh--chHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHH
Confidence 44444444444555555664322111 112344444432 25555555555555543333333
No 301
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.40 E-value=2.1e+02 Score=32.71 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
-..+-+.++.-|+..++|..++..-.+
T Consensus 283 l~~I~e~ie~lYd~lE~EveA~~~V~~ 309 (570)
T COG4477 283 LGLIQEKIESLYDLLEREVEAKNVVEE 309 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666777777777665433
No 302
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.34 E-value=1.4e+02 Score=31.54 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAA--IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 222 Le~EE~~L~~e--L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
+|+|--+.+++ |+++.+|..+|.+-++-.+.-+.+.+.=-++|+.+.|---.+ +.+|+..++.|++-. |
T Consensus 106 IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~K-------LEsLLqsMElAq~g~--~ 176 (305)
T PF15290_consen 106 IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKK-------LESLLQSMELAQSGS--L 176 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhH-------HHHHHHHHHHHHhcc--c
Confidence 34444444443 466667777777766666666666677677899998876554 345666677777665 5
Q ss_pred hhcccC
Q 010177 300 KRTNVL 305 (516)
Q Consensus 300 rktNV~ 305 (516)
+.-+.+
T Consensus 177 rde~~l 182 (305)
T PF15290_consen 177 RDEGCL 182 (305)
T ss_pred cccCCc
Confidence 554433
No 303
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=69.23 E-value=27 Score=35.92 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 269 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N 269 (516)
+.+..++-+..+.+....+..||+|.+.+..++..|+.|+..+.....++|...+
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4445555566667778889999999999999999999999999888888887554
No 304
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.05 E-value=1.4e+02 Score=30.55 Aligned_cols=113 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 170 CLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (516)
Q Consensus 170 C~e-C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 248 (516)
|.| |+..+-++++...+....=...|..|...++. +.++...+..+-+.+.+.+.....++.++.+|++
T Consensus 118 ~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~----------vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~ 187 (243)
T cd07666 118 CIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMG----------VIKRRDQIQAELDSKVEALANKKADRDLLKEEIE 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 249 ELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 249 ~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
+++.+.+..+..=+.=|.-+...+.. +..++...|.-.+.++.+
T Consensus 188 ~~e~kve~a~~~~k~e~~Rf~~~k~~------D~k~~~~~yae~~i~~~~ 231 (243)
T cd07666 188 KLEDKVECANNALKADWERWKQNMQT------DLRSAFTDMAENNISYYE 231 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
No 305
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=1.5e+02 Score=33.96 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHhhCCCcC
Q 010177 463 TLCNLKWALFWFVGNTNFQ 481 (516)
Q Consensus 463 lLtNlKwlLawv~~~t~~~ 481 (516)
++..+||...+.+.+....
T Consensus 602 ~~~~~k~~~~~ql~~~~~~ 620 (654)
T KOG4809|consen 602 LAECLKWLTTFQLVSIGLA 620 (654)
T ss_pred HHHHHccccHHHHHHHHHH
Confidence 5678899988887665544
No 306
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.95 E-value=35 Score=32.84 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 270 NFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
.++.++...+.+.+.++.|.+..+
T Consensus 165 ~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 165 KLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 307
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=44 Score=35.95 Aligned_cols=8 Identities=13% Similarity=-0.097 Sum_probs=3.3
Q ss_pred ccCc-ceEE
Q 010177 26 NCRH-FLCI 33 (516)
Q Consensus 26 ~c~~-~l~i 33 (516)
+|.. |.+|
T Consensus 66 ~tYnIPV~i 74 (365)
T KOG2391|consen 66 VTYNIPVII 74 (365)
T ss_pred CcccceEEE
Confidence 4443 3444
No 308
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=68.78 E-value=86 Score=31.29 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~ 241 (516)
-.|+.|.++|+.+|..++++-+
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 309
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.59 E-value=36 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
++.++..+.+..-+.+.+.++++....+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455554444444443
No 310
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.32 E-value=1.5e+02 Score=30.70 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.....+|.+=+.+...++..|+++..++++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555556666778888888888888888877776665
No 311
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.20 E-value=1.3e+02 Score=33.83 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 010177 191 DIEAYEACLQRLE 203 (516)
Q Consensus 191 E~d~Y~~fL~~L~ 203 (516)
+.+.++..++.|+
T Consensus 190 eld~L~~ql~ELe 202 (563)
T TIGR00634 190 RLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344443
No 312
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.18 E-value=1.5e+02 Score=38.39 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=20.0
Q ss_pred CcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 162 QTQVEQP-LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 162 ~s~IDhP-LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
.+.|.|- .|.+=...+ ..+..++++...+++..+.-+..+
T Consensus 45 k~~v~~eq~~~~~ekK~-~~l~q~~~~~~~q~~~~~~e~s~l 85 (1822)
T KOG4674|consen 45 KTEVNHEQQLSELEKKI-LRLEQRLSDLSRQAKLLRNELSDL 85 (1822)
T ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 233333333 336666666666666655555444
No 313
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.18 E-value=73 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
.++.|..+++.+...+..|...++.|+
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777877666554
No 314
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=68.11 E-value=95 Score=35.83 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
++.+.+.|.+++..++... ....+.. + .....|.....+..+|+++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~-------------~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-E-------------KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-h-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887774322 2222211 0 1112233333344444444554444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010177 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (516)
Q Consensus 254 ~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV 304 (516)
...++.+.... +--+ .+...+.++++.|..++.....+++.|+..++
T Consensus 67 i~~IE~qn~~L-qvq~---~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGL-QVQS---ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCch-hhHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 33333322211 1111 12333456777788888888888888887655
No 315
>PF13514 AAA_27: AAA domain
Probab=68.00 E-value=2.4e+02 Score=34.46 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999887777653
No 316
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.88 E-value=69 Score=35.43 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.+++..+.++-.+.+++|..=.--.|++.+++.+.+.+.+..+++|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35677787887777777776666778888888887777776655554
No 317
>PRK00106 hypothetical protein; Provisional
Probab=67.80 E-value=2.3e+02 Score=32.39 Aligned_cols=12 Identities=8% Similarity=0.291 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQN 240 (516)
Q Consensus 229 L~~eL~~LE~e~ 240 (516)
|.++.+.|++..
T Consensus 106 L~qREE~LekRe 117 (535)
T PRK00106 106 LTERATSLDRKD 117 (535)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 318
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.52 E-value=1.3e+02 Score=31.79 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 010177 395 TRYDKAMTLFLSCLKDFAEFAN 416 (516)
Q Consensus 395 ~kFD~AM~afL~cl~q~~e~~~ 416 (516)
+||..-=..+++-|+.+..-++
T Consensus 222 kKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 222 KKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666665553
No 319
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=67.48 E-value=1.1e+02 Score=31.54 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 010177 171 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 201 (516)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 201 (516)
.++.-..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 456666677777777655 22 23346677765
No 320
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=67.40 E-value=1.4e+02 Score=32.41 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~ 197 (516)
.++.|..++..+...+.....
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~ 306 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLST 306 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677776666555554443
No 321
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.03 E-value=2.2e+02 Score=31.98 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010177 281 ERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 281 e~~sl~~q~~~a~~qLdkLr 300 (516)
||..-..+++.+..+|+.|.
T Consensus 372 Er~~~~~~l~~~~~~~~~le 391 (582)
T PF09731_consen 372 ERNGRLAKLAELNSRLKALE 391 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443333333
No 322
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.83 E-value=1.3e+02 Score=33.36 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhcC
Q 010177 343 GQACLLLHTMCQYFR 357 (516)
Q Consensus 343 GQ~~LLL~tla~~l~ 357 (516)
|..+=|..+|+..++
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 444556666666543
No 323
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=66.81 E-value=1.3e+02 Score=35.00 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
..+|.++++.|..+..+++++|+..+.+....+..-++.|.+..+.+..
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555665555555555555666665555543
No 324
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=66.76 E-value=1.9e+02 Score=31.09 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 010177 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 328 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrl 328 (516)
+++..+++++..++.+++.++..--++..-.=-+||....++ .+.|..
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~~ 274 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQL 274 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCCE
Confidence 455566777777777777776554333344445677777666 466653
No 325
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.65 E-value=1.7e+02 Score=30.65 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 275 LIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLd 297 (516)
...+..++..-+.+++.++++|.
T Consensus 179 F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455666666777777777664
No 326
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.39 E-value=53 Score=35.78 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
..++..+.++.+++..+++.|..++.++.++|..+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888889999888888888887743
No 327
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.36 E-value=2.5e+02 Score=35.16 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=10.5
Q ss_pred CCcchhHHHHHHHHHhhc
Q 010177 143 SGFHSTITVLKRAFEIAT 160 (516)
Q Consensus 143 ~~ls~~i~~l~~lFdILS 160 (516)
.-+..++..|.++=.||+
T Consensus 1518 ~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1518 GEIQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHHHhcccHHHHHH
Confidence 335556666666666664
No 328
>PRK08724 fliD flagellar capping protein; Validated
Probab=66.02 E-value=28 Score=40.40 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010177 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (516)
Q Consensus 234 ~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~ 287 (516)
+.|+++...++.++..++. +++..|++||+.|+.++..+..++.+...|.+
T Consensus 620 ~sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s 670 (673)
T PRK08724 620 KSLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMMN 670 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666654 46778889999999998887766555554443
No 329
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.95 E-value=53 Score=35.91 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
..++.++.++.+++..+++.|.+++.++.+++..+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888889999998888888887743
No 330
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=65.79 E-value=84 Score=27.41 Aligned_cols=61 Identities=30% Similarity=0.359 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
.+.++++.|...+.-++.+.. .+...+ ..++..+-.++..+..+|.++++++..+-..+..
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~-~l~~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~ 69 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEERE-ALISGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLGA 69 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677777766665432 111112 2345566677777888888888887776665443
No 331
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.58 E-value=88 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 173 CMRVLSDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~Y~~ 197 (516)
=..-|.++++-|.+++...+.....
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~ 359 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINA 359 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665544444333
No 332
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.57 E-value=1.2e+02 Score=32.10 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010177 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE--LEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (516)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~--eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~ 289 (516)
.|....=+++-|--.+.|+..|++-+....+-+.||.+|+.++.++.+ .|++-.+ =+-|+.|.+...|..+|+.-+
T Consensus 56 PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR--VEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 56 PEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR--VEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344333333334445556666666666666666666666666666532 1111111 123444555555665665555
Q ss_pred HHHHHHH
Q 010177 290 EVSQAHL 296 (516)
Q Consensus 290 ~~a~~qL 296 (516)
+...+.|
T Consensus 134 eTmrssL 140 (305)
T PF15290_consen 134 ETMRSSL 140 (305)
T ss_pred HHHHhhh
Confidence 5555444
No 333
>PRK10698 phage shock protein PspA; Provisional
Probab=65.50 E-value=1.5e+02 Score=29.62 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 245 ~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
.++..|+.+.......-.++=..+..++..+.+....+..|.+++..+..+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555566666677777777777777777776553
No 334
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=65.34 E-value=3e+02 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
.|=.++..++..+..++.++.....++..++.+..+|
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l 505 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 3444444444444444444444444444444444444
No 335
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=65.25 E-value=2.4e+02 Score=31.82 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~ 264 (516)
|.++.+.|++...+|++..++|+.+.+++++.++++
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~ 127 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333433334444433333
No 336
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.12 E-value=1.2e+02 Score=33.09 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
|...++.|+++..|++.|.++++..+...+-|++
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKe 273 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKE 273 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666655555554444443
No 337
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.36 E-value=2.4e+02 Score=34.80 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.5
Q ss_pred CchHhHHHHHH
Q 010177 453 QENWTKALKYT 463 (516)
Q Consensus 453 ~e~WTkAlK~l 463 (516)
+...-|||-|.
T Consensus 590 e~e~eka~~~a 600 (1141)
T KOG0018|consen 590 EPEYEKAVQFA 600 (1141)
T ss_pred CHHHHHHHHHH
Confidence 33555555544
No 338
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.27 E-value=25 Score=36.88 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 262 (516)
+.|.+.|.-|++.||+..++|..+..+++.|+..|.+.=.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888888888888877765443
No 339
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.25 E-value=43 Score=33.68 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 150 TVLKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 150 ~~l~~lFdILSs~s~IDhPL--C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
..+....+-|.+-..|++-- =+|=++...+ ++.+++..+.+++.|...|+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444454444444431 2344444443 55555555555555555555
No 340
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=64.21 E-value=3e+02 Score=34.19 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 010177 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (516)
Q Consensus 269 N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~ 310 (516)
|.+..+..+..+..+.+...+...+.|++.|+-+.++...+.
T Consensus 282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 282 DLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 333333344444444444555555677777777777765554
No 341
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.13 E-value=2.1e+02 Score=34.36 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=6.6
Q ss_pred HHHHHHHHHh
Q 010177 194 AYEACLQRLE 203 (516)
Q Consensus 194 ~Y~~fL~~L~ 203 (516)
.|+.++++|.
T Consensus 904 ~~e~~~~~l~ 913 (1259)
T KOG0163|consen 904 NYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHhh
Confidence 4667777665
No 342
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=64.01 E-value=62 Score=34.47 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (516)
++.++.+-.++.+.+..|+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqE 21 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQE 21 (351)
T ss_pred chhhhhhcHHHHHHHHHHHH
Confidence 45566666666666666665
No 343
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=63.85 E-value=1.3e+02 Score=28.06 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010177 250 LELKSKRFK 258 (516)
Q Consensus 250 le~e~~~L~ 258 (516)
.++....+.
T Consensus 71 i~e~~~kl~ 79 (126)
T PF09403_consen 71 IEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333343
No 344
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.75 E-value=1.5e+02 Score=28.95 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 274 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L-~~eE~~~W~e~N~~q~q 274 (516)
..++.+...|..++++|+.+..++......++....+. ..+++.+=.++..++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667777777777666666666555443 33333443444444433
No 345
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.61 E-value=1.4e+02 Score=30.01 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHH
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACL 347 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~L 347 (516)
+.+.++++..+..+++....++..|.+.--| .+..|....+-.. .|..+--|..|-.||....-
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~-sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~~ 227 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVDY-STITISLYEPESI--------KPESPSFGSRFRDALKNGWN 227 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhce-EEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHHH
Confidence 3444445555555555555555555443222 3455555544110 11234456666666555443
No 346
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=63.60 E-value=93 Score=31.11 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 010177 256 RFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 256 ~L~~eE~~~W~e~N~~q~q 274 (516)
+++++-.+-......|-++
T Consensus 95 ~fekekqq~~~~~t~~Lwd 113 (228)
T PRK06800 95 QFQKEQQETAYEWTELLWD 113 (228)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 347
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=63.48 E-value=26 Score=30.15 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.9
Q ss_pred HHHHHHhHHH
Q 010177 263 RYWQEFNNFQ 272 (516)
Q Consensus 263 ~~W~e~N~~q 272 (516)
+..++||+++
T Consensus 43 ~lLheYNeiK 52 (83)
T PF07061_consen 43 KLLHEYNEIK 52 (83)
T ss_pred HHHHHHhHHH
Confidence 4567777775
No 348
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.46 E-value=1e+02 Score=26.88 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 182 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
..++..++.+++....-+.....+. ..+...+.+|+.|..+..++.-++++....+..|++.|..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~------~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKEL------TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555555555444444332211 2234445566777777777777777777766666666653
No 349
>PRK10869 recombination and repair protein; Provisional
Probab=63.27 E-value=1.8e+02 Score=32.97 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=5.0
Q ss_pred ceeeeCCccce
Q 010177 433 PYKIENDKVEN 443 (516)
Q Consensus 433 PY~I~kDkIgg 443 (516)
.|.|.+...++
T Consensus 502 ~~~v~k~~~~~ 512 (553)
T PRK10869 502 HFFVSKETDGG 512 (553)
T ss_pred EEEEeccccCC
Confidence 34455544443
No 350
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=63.10 E-value=1.8e+02 Score=29.71 Aligned_cols=40 Identities=30% Similarity=0.276 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010177 279 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (516)
+.+..+++++++.++.+|++ +- -.=-+||.+..++ ...|.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~---~~-----i~AP~dG~V~~~~-~~~G~ 224 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLEL---TY-----VKAPIDGRVLKIH-AREGE 224 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CE-----EECCCCeEEEEEe-cCCCC
Confidence 34455556666666555442 21 2223477766665 45664
No 351
>PRK10698 phage shock protein PspA; Provisional
Probab=62.72 E-value=1.7e+02 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 173 CMRVLSDKLDKEVDDVT 189 (516)
Q Consensus 173 C~d~Lle~Ld~qle~~~ 189 (516)
=.+.++..|...+.++.
T Consensus 28 ~l~q~i~em~~~l~~~r 44 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVR 44 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555543
No 352
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.71 E-value=78 Score=36.86 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKE--------------LELKSKRFKELEERYWQEFNNFQFQLIAHQEE 281 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~--------------le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee 281 (516)
.....++|.++|...|++.+.+..+|.+ |..++..+....+++|..++.-..++.+...+
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544432 33444555555555666665555554444333
No 353
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=62.65 E-value=1.2e+02 Score=32.55 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 010177 262 ERYWQEFNNFQFQLIAHQEERDAIS 286 (516)
Q Consensus 262 ~~~W~e~N~~q~qL~~~~ee~~sl~ 286 (516)
.+|-..+|.-+..+.++++.+..+.
T Consensus 183 ~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 183 AKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3577777777777777666665544
No 354
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=62.26 E-value=28 Score=34.08 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=9.7
Q ss_pred cccCCcchHHHHHH
Q 010177 163 TQVEQPLCLECMRV 176 (516)
Q Consensus 163 s~IDhPLC~eC~d~ 176 (516)
.-=||++|-|+.|-
T Consensus 97 GICDy~~CCDGSDE 110 (176)
T PF12999_consen 97 GICDYDICCDGSDE 110 (176)
T ss_pred CcCcccccCCCCCC
Confidence 33578888887665
No 355
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=62.21 E-value=42 Score=29.36 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c---------------cC-C--------------HHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR---D---------------VL-S--------------EADFLKEKLKIEE 224 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~---~---------------~~-s--------------ee~l~~e~~~Le~ 224 (516)
++.++.+++.++..++.|....+.|+.-.. + .+ . +-++.+...-++.
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 567888999999889999887766652110 0 00 0 0112333344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
..+.+.+.++.++++..++.+++..++....++
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666655554443
No 356
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.97 E-value=1.3e+02 Score=36.03 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~ 276 (516)
.+++....++..+++.+.+...++..|.++|+++...+..+-.+.-++++.++.||.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555666666666666666666666666666665555556666666666554
No 357
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=61.79 E-value=58 Score=36.64 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
-|+..|-+.=..|+..+.++.+.|.+-.+++.
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ 48 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTD 48 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 46666666656666666666666655555544
No 358
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.77 E-value=1.1e+02 Score=26.78 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc--------------cccCCH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEA--------------RDVLSE-ADFLKEK-LKIEEEERKLEAAIEETE 237 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~f--L~~L~~~~--------------~~~~se-e~l~~e~-~~Le~EE~~L~~eL~~LE 237 (516)
.|-+...++++..-+|++....+ |++|-.+. .+.++. +.+..-+ ..++.+...|...|.+++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888877663 34442211 012333 3333333 335777888888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 238 KQNAEVNAELKELEL 252 (516)
Q Consensus 238 ~e~~~l~~El~~le~ 252 (516)
++.+++.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999888888877654
No 359
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=61.66 E-value=1e+02 Score=28.82 Aligned_cols=75 Identities=27% Similarity=0.374 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--~~s--ee~------l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 248 (516)
..++.++.....+++........++--+.+ .+. --+ ..+-...||+-...+.++|+.||.+.+.+.+++.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777666665422111 000 000 1233355788888888888888888888888777
Q ss_pred HHHHH
Q 010177 249 ELELK 253 (516)
Q Consensus 249 ~le~e 253 (516)
+|+.-
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 77654
No 360
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=61.66 E-value=83 Score=32.01 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (516)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~ 268 (516)
..|...|....+.=+ .++.+++...++.+..+...+..- -+...+.+++++..+++...-...+-...+..-
T Consensus 27 ~~El~~~~~L~~~Gk-----iLeg~~Ld~aL~~~~~~~~~~~~~---~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~ 98 (256)
T PF14932_consen 27 EEELQAFEELQKSGK-----ILEGEALDEALKTISAFSPKLLEL---EEEDLEALEEELEALQEYKELYEQLRNKLQQLD 98 (256)
T ss_pred HHHHHHHHHHHHcCC-----cCCHHHHHHHHHHcccccCCcccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcc
Q 010177 269 NNFQFQLIAHQEERDAISSKIEVSQAHLE-LLKRTN 303 (516)
Q Consensus 269 N~~q~qL~~~~ee~~sl~~q~~~a~~qLd-kLrktN 303 (516)
+.....+..++.+.......+..+...+. .+.++|
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~ 134 (256)
T PF14932_consen 99 SSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLN 134 (256)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=61.61 E-value=29 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 280 EERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
+|..++..++..-..+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 445555555555555666666644
No 362
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.47 E-value=26 Score=31.20 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
.+++++.+.+.+++.+++.+.++|.+|+..|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555554
No 363
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=3.3e+02 Score=32.11 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
.+++..+..-.+.......++......|...-+.+-..+..++.+..+...+++-..-+..+++..+.+|++.
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333333333334444444444444444555566666666666666666666666666667666653
No 364
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=61.27 E-value=1.1e+02 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
.++|...+..++..+|.++.+|+..+.+++.+
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666543
No 365
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=60.95 E-value=45 Score=38.71 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
|+.+|+.|++|+++ |+..+. ...++..+.+-++.+.++.+++.++||+.-+.+....+.
T Consensus 2 LRdkL~~Lq~ek~~---E~~~l~---~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---ERQALK---SSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666554 222222 233444445566788888889999999998887765554
No 366
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.89 E-value=2.4e+02 Score=30.39 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 274 QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 274 qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
+...+.+-...|..++..+...+..|.++
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666543
No 367
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.81 E-value=1.9e+02 Score=34.33 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.|++|++.+.+.+.+++++++.+...+++|..+.++|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666666666666666666666665555554
No 368
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.69 E-value=2.5e+02 Score=30.48 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHh
Q 010177 147 STITVLKRAFEI 158 (516)
Q Consensus 147 ~~i~~l~~lFdI 158 (516)
+.|..+.=.|.|
T Consensus 47 ~~iss~gwff~i 58 (401)
T PF06785_consen 47 SIISSLGWFFAI 58 (401)
T ss_pred HHHHHhHHHHHh
Confidence 445555555554
No 369
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=60.62 E-value=6 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhcccCCCceee
Q 010177 288 KIEVSQAHLELLKRTNVLNDAFPI 311 (516)
Q Consensus 288 q~~~a~~qLdkLrktNV~Nd~F~I 311 (516)
+++..+..|.+..+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 455666778888889888766544
No 370
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.61 E-value=89 Score=32.29 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=15.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 010177 394 STRYDKAMTLFLSCLKDFAEFA 415 (516)
Q Consensus 394 ~~kFD~AM~afL~cl~q~~e~~ 415 (516)
...||....+||....+.+-.+
T Consensus 210 ~~~~~Is~~~~lt~~~~~c~~~ 231 (292)
T KOG4005|consen 210 DEEFDISRLEELTESLLACITA 231 (292)
T ss_pred chhhhHHHHHHHHHHHHHHhhh
Confidence 3468888888888777766554
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.47 E-value=51 Score=37.66 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e 253 (516)
++++.+|++.+++++++.+++.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 372
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.44 E-value=2.2e+02 Score=29.73 Aligned_cols=27 Identities=7% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
++.=+.++.+++++....+.-++.|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666665555543
No 373
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.98 E-value=3.6e+02 Score=34.01 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=9.2
Q ss_pred HhhcccCCCceeeeecCCee
Q 010177 299 LKRTNVLNDAFPIWHDGEFG 318 (516)
Q Consensus 299 LrktNV~Nd~F~I~hdG~fG 318 (516)
|+..+-.|..|..-++..+|
T Consensus 950 l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 950 LHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHhHHHHHHHhhhhhc
Confidence 33334444444444454555
No 374
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.89 E-value=1.3e+02 Score=26.73 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
+++......+..++..|.+.-..|+......+.=+++-+.+..+-...-++--+.......++..+..++..+...+...
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcccC
Q 010177 293 QAHLELLKRTNVL 305 (516)
Q Consensus 293 ~~qLdkLrktNV~ 305 (516)
...+..+....-|
T Consensus 101 e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 101 EEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHH
No 375
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=3.8e+02 Score=32.33 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCceeee
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN--VLNDAFPIW 312 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktN--V~Nd~F~I~ 312 (516)
.++++.++..++++.+.+...+..+...++.+..++ .-+.+.+|.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ie 854 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIE 854 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHH
Confidence 455555566666665555555555566666666543 334444443
No 376
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.81 E-value=36 Score=38.86 Aligned_cols=35 Identities=43% Similarity=0.595 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.+-.++.+++.++.++.+++++++++++++.+.+
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555555555444433
No 377
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=59.73 E-value=71 Score=27.53 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~ 268 (516)
.++|.+++.+|+..+..|-..+...+.|-..|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456777888888888888888888887777776544 355544
No 378
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.57 E-value=88 Score=30.89 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
+++..|..+..+|.+.+..|.+++.-+++||+.|..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777653
No 379
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=59.42 E-value=1.1e+02 Score=25.77 Aligned_cols=85 Identities=16% Similarity=0.325 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEAD---FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~---l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
++....+++.+...+..|..-+.... . ..+..+ +..-+..|+.....+..++..++.+.+....++.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555533332221 1 122222 2334556777788888888888888888888888887777
Q ss_pred HHHHHHHHHHHH
Q 010177 255 KRFKELEERYWQ 266 (516)
Q Consensus 255 ~~L~~eE~~~W~ 266 (516)
+.++.+.++--.
T Consensus 90 k~~e~L~e~~~~ 101 (123)
T PF02050_consen 90 KKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766654333
No 380
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.35 E-value=1.1e+02 Score=26.03 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~ 289 (516)
|+++|..+...+.+|...++...++|+.+.+ .++-+...-++.+++|.-++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~ene-------qlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENE-------QLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444333333433332 23333333444555554443
No 381
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.06 E-value=1.5e+02 Score=31.40 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=11.2
Q ss_pred CchHhHHHHHHHHhHHHH
Q 010177 453 QENWTKALKYTLCNLKWA 470 (516)
Q Consensus 453 ~e~WTkAlK~lLtNlKwl 470 (516)
..+|+...+-+=..++.+
T Consensus 293 ~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHCCHCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccc
Confidence 468887666555555544
No 382
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=58.83 E-value=1.8e+02 Score=30.76 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (516)
....|+.++++++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777765543
No 383
>PLN02320 seryl-tRNA synthetase
Probab=58.62 E-value=73 Score=35.94 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010177 396 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 437 (516)
Q Consensus 396 kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 437 (516)
+=|++...|-.+++...+.++ .|.|||++-
T Consensus 353 ~peqs~~e~e~ll~~~e~i~~------------~LgLpyrvv 382 (502)
T PLN02320 353 RPEESESFHEELIQIEEDLFT------------SLGLHFKTL 382 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------------HcCCCeEEE
Confidence 347888888888888777775 378888774
No 384
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=58.57 E-value=1.6e+02 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e 267 (516)
..|..-|++||+++..|..+++..+- +|+++.+.|.+.
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~---rLeQEsKAyhk~ 91 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEW---RLEQESKAYHKA 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55667788888899889888888875 367766655553
No 385
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=58.51 E-value=1.5e+02 Score=33.25 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
.+|++++.-|..=-.++++.++.+.-.|+.+|.++|++...++ ...+-|+..+.++..+..+........
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~----------s~~~~q~~~~h~~ka~~~~~~~~l~~~ 377 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLE----------SAGQTQIFRKHPRKASILNMPLVLTLF 377 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHhHHHHHHhhhHhhhhhhchHHHHHH
Confidence 3444444443333345566666666666666666666544443 234556666777777777777777777
Q ss_pred HHHHhhcccCCCceeeeecC------------CeeeeccccCCCC
Q 010177 296 LELLKRTNVLNDAFPIWHDG------------EFGTINNFRLGRL 328 (516)
Q Consensus 296 LdkLrktNV~Nd~F~I~hdG------------~fGTINGlRLGrl 328 (516)
++.++..|=|-.+|-=.... -=.+||-||+--.
T Consensus 378 ~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~ 422 (554)
T KOG4677|consen 378 YECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAW 422 (554)
T ss_pred HHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhh
Confidence 77777777666555432221 1246777777543
No 386
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=58.48 E-value=3.7e+02 Score=31.75 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+.+|...+...++...+.-.++.+.+..|+.+....+..=++.-..+++....+.-+...+.-++..+......|.++++
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455555555555555555555555544444433333344455555555544444445555555555555666555
Q ss_pred ccc
Q 010177 302 TNV 304 (516)
Q Consensus 302 tNV 304 (516)
-+.
T Consensus 623 ~~~ 625 (698)
T KOG0978|consen 623 EES 625 (698)
T ss_pred ccc
Confidence 443
No 387
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=58.37 E-value=2.3e+02 Score=29.35 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
+..|..+++...++|.++|+-+..+..+|+.-+-.+|.+.+.
T Consensus 118 Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 118 LYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888888888888888888887777777766544
No 388
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=58.22 E-value=4.2e+02 Score=32.24 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=39.6
Q ss_pred eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCc------------eeeeecCCCceEEe
Q 010177 311 IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYR------------IKIIPMGSYPRIMD 377 (516)
Q Consensus 311 I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~------------YkLvPmGS~SkI~~ 377 (516)
|-|=.+=||.-.+|.-+- +..-.-.|+--.|--+.++...+.+.+.. |+=+ ++-+-.|.|+.|-.
T Consensus 804 i~~lE~g~~~a~lr~~~~-slk~~l~e~ar~Wasl~~~~~vl~e~l~~-~ke~rlP~vi~~A~~~F~hlT~G~Yt~Iy~ 880 (984)
T COG4717 804 IAQLEGGGTVAELRQRRE-SLKEDLEEKARKWASLRLAVQVLEEALRL-FKERRLPAVIQEASEFFMHLTDGRYTGIYT 880 (984)
T ss_pred HHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhchHHHHHHHHHHhhccCCceeeeec
Confidence 334334466777776542 23446678888888888888888876641 1100 23445688888853
No 389
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.11 E-value=2.7e+02 Score=35.01 Aligned_cols=18 Identities=6% Similarity=-0.245 Sum_probs=11.1
Q ss_pred HhhcccCCCceeeeecCC
Q 010177 299 LKRTNVLNDAFPIWHDGE 316 (516)
Q Consensus 299 LrktNV~Nd~F~I~hdG~ 316 (516)
+.+.|=++..||+...+.
T Consensus 940 ~~~ine~~s~l~~~~~~~ 957 (1294)
T KOG0962|consen 940 RNDINEKVSLLHQIYKLN 957 (1294)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 345566667777766553
No 390
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.09 E-value=41 Score=31.59 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
||.+...|.++++.|..|.+++..|+..++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 391
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.03 E-value=1.6e+02 Score=27.39 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 245 ~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
+.|..+..++++..+.-+..=.+.+..+.++..+..+.+++.....-....++.|.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444445556666666666666666666666665565554
No 392
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=57.94 E-value=91 Score=28.98 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 279 QEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdk 298 (516)
.++-..|..+|.-..+.|++
T Consensus 88 k~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666553
No 393
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=57.89 E-value=2.6e+02 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 010177 338 INAAWGQACLLLHTMCQYFR 357 (516)
Q Consensus 338 INAAwGQ~~LLL~tla~~l~ 357 (516)
||--+--+..||.+++...+
T Consensus 393 iNiiLalm~VlLvfVSTIa~ 412 (455)
T KOG3850|consen 393 INIILALMTVLLVFVSTIAN 412 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666666677777776663
No 394
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=57.87 E-value=85 Score=30.87 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010177 184 EVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 184 qle~~~~E~d~Y~~fL~~L~ 203 (516)
+++...+=++.|+.-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666555
No 395
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.79 E-value=68 Score=28.61 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 010177 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e-~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
..++...++-.|+|-.-+.+.|.++|++...+..||.+++.+...++. .-|-. -..-.-.-..++.++..+..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 356666666677777778889999999999999999888876554442 11100 00000001234566777777777
Q ss_pred HHHHHHHHHhhcc
Q 010177 291 VSQAHLELLKRTN 303 (516)
Q Consensus 291 ~a~~qLdkLrktN 303 (516)
.....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 7777777776554
No 396
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.61 E-value=1.3e+02 Score=26.11 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS 211 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s 211 (516)
.+.+..++..+..+.+.-..-++.+.++.-+.++
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls 47 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLS 47 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 4555666666666666666666666655433344
No 397
>PLN02372 violaxanthin de-epoxidase
Probab=57.53 E-value=1.3e+02 Score=33.27 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 010177 249 ELELKSKRFKELEERYWQEFNNF 271 (516)
Q Consensus 249 ~le~e~~~L~~eE~~~W~e~N~~ 271 (516)
.+++..++|++.|..|.++++.-
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lske 429 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKE 429 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455555555555555544433
No 398
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.48 E-value=2.6e+02 Score=29.64 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAE 242 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~ 242 (516)
+|.++.++|.+|+++++.
T Consensus 132 ~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 132 EERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555444443
No 399
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.25 E-value=39 Score=26.26 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
+-...+..|..++..|+.+...|..++..|+.|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555666777777777777777777666543
No 400
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=56.67 E-value=63 Score=32.36 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010177 282 RDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 282 ~~sl~~q~~~a~~qLdkLr 300 (516)
.+.+.+++..++.+|+.++
T Consensus 111 ~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 111 VEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555444
No 401
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.64 E-value=49 Score=26.74 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.+||.+-.++...+..+++|.+++..+++++++-.++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666554433
No 402
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=56.54 E-value=2.3e+02 Score=30.37 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 010177 172 ECMRVLSDKLDKEVDDVTRDIEAYEA--CLQRLE 203 (516)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~--fL~~L~ 203 (516)
.|...--+.|+.+|+.+.++.+.+-. |+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 47778889999999999998887433 444443
No 403
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=56.39 E-value=3.9 Score=36.74 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
+|+.+.-++.+++..||.+...+..++.+|+.+..+|+.++
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555566666667777766666666666666655555444
No 404
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=56.27 E-value=2.3e+02 Score=28.59 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc----ccccCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 010177 172 ECMRVLSDKLDKEV-DDVTRDIEAYEACLQRLEGE----ARDVLSEADFLKEKLKIEE-------EERKLEAAIEETEKQ 239 (516)
Q Consensus 172 eC~d~Lle~Ld~ql-e~~~~E~d~Y~~fL~~L~~~----~~~~~see~l~~e~~~Le~-------EE~~L~~eL~~LE~e 239 (516)
+-.+.+.+.|+..+ +++..=++.|......+++- ...-++-+.....+.+|.. -..+.+++++.++..
T Consensus 75 ~~~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 75 EKCDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKV 154 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44445566665555 44555555566655554421 1111222333334444422 112334455555555
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010177 240 NAEVNAELKEL------------ELKSKRFKELEERYWQEFNNFQFQLIAH 278 (516)
Q Consensus 240 ~~~l~~El~~l------------e~e~~~L~~eE~~~W~e~N~~q~qL~~~ 278 (516)
.+.++.+|.+- .--.+.|-..+.+||.+...+-.+|.+.
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~ 205 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEV 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443321 0112234466667777776666665544
No 405
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.26 E-value=1.6e+02 Score=26.88 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
...++.-++++.++-.|...|+..-+..-.++ .......++++-+.+++.|+.|++...=++....+.|..+
T Consensus 33 kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~d--------k~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 33 KKISELAKKELEDVGDEKAVYTSVGRMFMLSD--------KAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777776555443221 1122334666667777777777777777776666666555
Q ss_pred HHHH
Q 010177 255 KRFK 258 (516)
Q Consensus 255 ~~L~ 258 (516)
.+|-
T Consensus 105 rell 108 (114)
T KOG3501|consen 105 RELL 108 (114)
T ss_pred HHHH
Confidence 5443
No 406
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=56.04 E-value=3.5e+02 Score=31.53 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=16.3
Q ss_pred eeeeccccCCCCCCCCCChHHHH
Q 010177 317 FGTINNFRLGRLPKIPVEWDEIN 339 (516)
Q Consensus 317 fGTINGlRLGrlp~~~V~W~EIN 339 (516)
++++=-=|.|.+.-.||.|.=|+
T Consensus 471 l~~Ll~~~~~~~~~~P~~~lSI~ 493 (632)
T PF14817_consen 471 LNALLRRRAGGLQRDPSADLSIH 493 (632)
T ss_pred HHHHHhhccCCCCCCCchhhHHH
Confidence 34555667777777888888886
No 407
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=55.97 E-value=2.5e+02 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
|..|.+.++.|....-....+++.++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44455555666666666666777777654
No 408
>PF13166 AAA_13: AAA domain
Probab=55.35 E-value=3.7e+02 Score=30.73 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 010177 179 DKLDKEVDDV 188 (516)
Q Consensus 179 e~Ld~qle~~ 188 (516)
+.+...++.+
T Consensus 332 ~~l~~~l~~l 341 (712)
T PF13166_consen 332 EALKEELEEL 341 (712)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 409
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.25 E-value=1.3e+02 Score=33.83 Aligned_cols=25 Identities=4% Similarity=0.203 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
+.|.+++.--+.+-+.|+..++.+.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~ 361 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIG 361 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 410
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.42 E-value=94 Score=31.02 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 275 LIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qL 296 (516)
+....++++.++.|.+....+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 411
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.19 E-value=40 Score=27.21 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+..+...+.+++++++++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 412
>PRK11281 hypothetical protein; Provisional
Probab=53.34 E-value=1.4e+02 Score=36.84 Aligned_cols=16 Identities=31% Similarity=0.053 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 010177 335 WDEINAAWGQACLLLH 350 (516)
Q Consensus 335 W~EINAAwGQ~~LLL~ 350 (516)
-.++|.+++|-..-+.
T Consensus 283 ~~~~N~~Ls~~L~~~t 298 (1113)
T PRK11281 283 ELEINLQLSQRLLKAT 298 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3477999988765443
No 413
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.14 E-value=40 Score=36.18 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010177 397 YDKAMTLFLSCLKDFAE 413 (516)
Q Consensus 397 FD~AM~afL~cl~q~~e 413 (516)
.=.+-.+|.++.+.+.+
T Consensus 292 ~l~kRr~~~~i~~~Lr~ 308 (370)
T PF02994_consen 292 TLQKRRKFNPIKKKLRE 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667788887776654
No 414
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=53.05 E-value=3.4e+02 Score=29.61 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 268 ~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
++..+-++.+++.+.+....-|+......+.+
T Consensus 368 ~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 368 LPKLQVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554444433
No 415
>PRK14160 heat shock protein GrpE; Provisional
Probab=53.02 E-value=2.5e+02 Score=28.32 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
+..+..++++...+.+++..++.+..++.+.-.+.-.++.+|+..
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666655555544333444444444433
No 416
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=52.87 E-value=79 Score=36.15 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~ 241 (516)
+++.++|++..+|++++.+++.+.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666665554
No 417
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.85 E-value=1.3e+02 Score=34.88 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.|+.+||...++|..+|+++-...+++.++|...+.|+.+|+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555555555666666666666666655555555555554
No 418
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.83 E-value=2e+02 Score=30.22 Aligned_cols=121 Identities=6% Similarity=0.100 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccc-cCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 010177 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLE--GEARD-VLSEADFLKEKLKIEEEERKLEA-------AIEETEKQNAE 242 (516)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~--~~~~~-~~see~l~~e~~~Le~EE~~L~~-------eL~~LE~e~~~ 242 (516)
=.+.-++.++++++.++.+...|+.--.-+. .+... ...-.++..++.+++.+...+.. ++..++.+.+.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3455577788888888888888877321111 11100 00123455566666666655543 35566667777
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 243 VNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 243 l~~El~~le~e~~~L-~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
++++|.+...+...- ......--.+|..++.+..-.+.-..++..+++.+.
T Consensus 254 l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666654433221 001112223667777777777777777877777776
No 419
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.45 E-value=4.9e+02 Score=31.28 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK----ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~----~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
|+...++..+.++.|+...+++-+.++.+..|-+++- +-+.++.+....|..+...+.-|......+....+-.|+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5666667777777777777777777777776666653 336667777777777777777777777888888888888
Q ss_pred HHhhccc
Q 010177 298 LLKRTNV 304 (516)
Q Consensus 298 kLrktNV 304 (516)
.-.+-|.
T Consensus 519 ~sekEN~ 525 (861)
T PF15254_consen 519 ASEKENQ 525 (861)
T ss_pred HHHhhhh
Confidence 8887774
No 420
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=52.41 E-value=2e+02 Score=30.24 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 274 QLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 274 qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
++...+.+...+.++++.++.+|+.+.
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 334444555666777777777766544
No 421
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=52.40 E-value=1.9e+02 Score=26.45 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
.+..+.-++.+..+..+|.-.+.++.-.. +--..|.+.-+.+..+...+++.+.++.+++..+|...+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665554211 1112334444555555555555555555555555555443
No 422
>PF14992 TMCO5: TMCO5 family
Probab=52.37 E-value=2.5e+02 Score=29.52 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD--AISSKIEVSQ 293 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~--sl~~q~~~a~ 293 (516)
..++.+..+++.++.++.+++.......+.++.--.....++..|...+++++ -|+.++..++
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544444443333333333344444444444443 3333444443
No 423
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=52.34 E-value=1.1e+02 Score=31.64 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVT 189 (516)
Q Consensus 175 d~Lle~Ld~qle~~~ 189 (516)
|.|..+|++++-.++
T Consensus 160 d~l~~eLqkr~~~v~ 174 (289)
T COG4985 160 DPLERELQKRLLEVE 174 (289)
T ss_pred cHHHHHHHHHHHHHH
Confidence 556666666666553
No 424
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=52.07 E-value=3e+02 Score=29.41 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 222 Le~EE~~L~~eL~~-LE~e~~~l~~El~~le~e~~~L~ 258 (516)
++.+|++|.+.++. -+++++++..+|..|+.-+.++.
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir 88 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR 88 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45666666666553 45566666666666665555543
No 425
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=51.84 E-value=12 Score=35.04 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.0
Q ss_pred CccceeeEEecCCCCchHhHHHHHHHHh
Q 010177 439 DKVENYSITQSFNKQENWTKALKYTLCN 466 (516)
Q Consensus 439 DkIgg~SIkl~~n~~e~WTkAlK~lLtN 466 (516)
.-|-++++-+-.|+++.|.++++||+.|
T Consensus 110 ~~v~~~~~diRgntD~sW~Rg~~~l~~n 137 (140)
T PF11684_consen 110 KVVRGRSVDIRGNTDESWRRGARYLVKN 137 (140)
T ss_pred CEEeeeeeeEecCcHHHHHHHHHHHHHh
Confidence 4466788888789999999999999887
No 426
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=51.74 E-value=1.9e+02 Score=26.38 Aligned_cols=90 Identities=10% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~---~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
...+++.+...++.|..-+..... ..++...+. .=+..|..........+..++.+.+....++.+...+.+.+
T Consensus 35 ~~~~L~~L~~y~~~y~~~~~~~~~---~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 35 AEQQLKMLEDYRLEYRQQLNDRGS---AGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555443332211 123433332 22456777777777888888888888888888888888888
Q ss_pred HHHHHHHHHHHhHHHH
Q 010177 258 KELEERYWQEFNNFQF 273 (516)
Q Consensus 258 ~~eE~~~W~e~N~~q~ 273 (516)
+.+-++...++...+.
T Consensus 112 EkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 112 ETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777765543
No 427
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=51.15 E-value=1.8e+02 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
++.|..++..+...+..|...++.|+
T Consensus 15 i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 15 VESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666766665553
No 428
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=51.14 E-value=1.7e+02 Score=25.49 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~ 241 (516)
+..++++|..+..+|.++|...+....
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 334444444444444444444444333
No 429
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.85 E-value=1.9e+02 Score=31.04 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877777777766653
No 430
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.76 E-value=3.3e+02 Score=30.42 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 240 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA-HQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 240 ~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~-~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
..++++++++|...+..+..+-...-.+||.....-.+ ..+.+.++.-.....+..-+.|+..
T Consensus 175 ~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 175 VKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555566666554333 2223333334444444444556654
No 431
>smart00338 BRLZ basic region leucin zipper.
Probab=50.57 E-value=64 Score=25.73 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
|+.++..|+.+..+|..++..|+.+...|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 432
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.54 E-value=87 Score=24.94 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.|+.++..|+.+...+..++..|+.+...|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 433
>PLN02372 violaxanthin de-epoxidase
Probab=50.41 E-value=3.2e+02 Score=30.49 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAA 232 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~e 232 (516)
|++.|.+.++.-++.+-.= ... .+++++++..+++.+|..+.+.
T Consensus 362 l~~~l~~~~e~~e~~i~~e---~~~---------~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 362 LLERLEKDVEEGEKTIVKE---ARQ---------IEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888777765543221 111 1234455555666655555444
No 434
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=49.91 E-value=55 Score=32.63 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~ 277 (516)
+......++++...++.+|..++. +++..|++||..|..++..+..
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667777777665 4777888999999888766443
No 435
>PRK12765 flagellar capping protein; Provisional
Probab=49.58 E-value=78 Score=36.26 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
.-+-+.++...|++++..++. +|+..+++|++.|+.+..-+..++.....|..++..+
T Consensus 533 ~~~~l~~~~~~l~~~~~~~~~---rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~ 590 (595)
T PRK12765 533 YDESLTNEIKSLTTSKESTQE---LIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAA 590 (595)
T ss_pred hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334455555555555555443 5778888999999988887777666666666555543
No 436
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.54 E-value=35 Score=27.58 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
..+.+++.+++++.+++.++..+|+.+.+.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666665555555
No 437
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.54 E-value=4e+02 Score=29.38 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010177 338 INAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 338 INAAwGQ~~LLL~tla~~l 356 (516)
||--+--+.+||..++.-+
T Consensus 344 inllL~l~~vlLv~vSt~~ 362 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVA 362 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444455555555444
No 438
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=49.45 E-value=1.1e+02 Score=33.11 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 010177 188 VTRDIEAYEACLQRLE 203 (516)
Q Consensus 188 ~~~E~d~Y~~fL~~L~ 203 (516)
..+..+.|+.+++.+.
T Consensus 213 ~~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 213 SIRSLEYFENLYDAFG 228 (406)
T ss_dssp ----HHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHhcC
Confidence 3456777888888873
No 439
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.13 E-value=2.2e+02 Score=31.68 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
...++.+|..+-+++..++++|..++.++.++|...-.+... .......+.+.+.-++.+...+.+.++++++...
T Consensus 27 ~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l- 102 (429)
T COG0172 27 DVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL- 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 345667788899999999999999999998888733221111 1223445556666666665555555555543332
Q ss_pred HHHHHhhcccCCCceeeeecC
Q 010177 295 HLELLKRTNVLNDAFPIWHDG 315 (516)
Q Consensus 295 qLdkLrktNV~Nd~F~I~hdG 315 (516)
|.--|+-.+.=+++-|+
T Consensus 103 ----l~ipNi~~~~VPvg~de 119 (429)
T COG0172 103 ----LTIPNIPHESVPVGKDE 119 (429)
T ss_pred ----HhCCCCCccccCcCCCc
Confidence 44557777766666554
No 440
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=48.81 E-value=1.8e+02 Score=26.30 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
..+++..|.+.....-.+|++++.+.+
T Consensus 51 qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 51 QGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433
No 441
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.57 E-value=5.8 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
++-+...++.|+..|..+++..
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4445566667777777776653
No 442
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=48.55 E-value=1.6e+02 Score=28.80 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 242 EVNAELKELELKSKRFKELE 261 (516)
Q Consensus 242 ~l~~El~~le~e~~~L~~eE 261 (516)
+++.||++++.+...|+...
T Consensus 124 eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444444433
No 443
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.48 E-value=2.1e+02 Score=25.88 Aligned_cols=35 Identities=34% Similarity=0.448 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
|..+|...-.-|.+.+.+=+.....|..+|+.-+.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~ 40 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQ 40 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333334333333333
No 444
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.48 E-value=1.6e+02 Score=34.48 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~ 241 (516)
++.+-..+..+|+.......
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~ 199 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSIS 199 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 445
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.35 E-value=5.3e+02 Score=30.52 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~s-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.+.+..++..+.++++.|....+.+.+....... .++...++..-+....++..++..|..+..+..+.+.-..++..-
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
+.+-=.+|-++.+.++.+=-.+..+...-..+=++..+
T Consensus 501 ~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~ 538 (716)
T KOG4593|consen 501 LREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEEN 538 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 446
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.21 E-value=1.7e+02 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 280 EERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkL 299 (516)
.+...+..++.+....+..+
T Consensus 76 ~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 76 KEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333
No 447
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.90 E-value=4.4e+02 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=18.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 010177 167 QPLCLECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 202 (516)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d-----~Y~~fL~~L 202 (516)
.|--.+|.. -++..+.+..++++... .|..|..++
T Consensus 724 ~p~i~~i~r-~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 724 GPEISEIKR-KLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 454444444 55555555555544333 366666655
No 448
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=47.87 E-value=1.1e+02 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010177 182 DKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (516)
+.++..++++++-+...+.+++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 449
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=47.80 E-value=5e+02 Score=30.09 Aligned_cols=30 Identities=7% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
+...|.+.+.....++....+..+++..++
T Consensus 422 ~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 422 RIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 450
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.80 E-value=3.5e+02 Score=28.28 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 260 (516)
|+.-+..+..+++.|..-..+++..+..|+.+..+++..
T Consensus 160 Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l 198 (265)
T COG3883 160 LEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNAL 198 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444433
No 451
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.57 E-value=1.7e+02 Score=24.61 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 266 ~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
..|++++..+.....+...|.+++.....+++.|..
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777776666666543
No 452
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=47.32 E-value=2.8e+02 Score=31.78 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhc
Q 010177 191 DIEAYEACLQRLEG 204 (516)
Q Consensus 191 E~d~Y~~fL~~L~~ 204 (516)
+.+.|++-++.|+.
T Consensus 192 ~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 192 DLEEYKKRLEAIKK 205 (555)
T ss_pred hHHHHHHHHHHHHh
Confidence 44445555555544
No 453
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=47.27 E-value=3.5e+02 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
++.++++++.+...-+.-++.+
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666655555555443
No 454
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.20 E-value=4.7e+02 Score=29.55 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 010177 399 KAMTLFLSCLK 409 (516)
Q Consensus 399 ~AM~afL~cl~ 409 (516)
.|+.+++.-|+
T Consensus 278 ~~Lk~H~~svr 288 (475)
T PRK10361 278 SALQEHIASVR 288 (475)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 455
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.20 E-value=3e+02 Score=27.39 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK------------SKRFKELEERYWQEFNNFQFQLIAHQEE 281 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e------------~~~L~~eE~~~W~e~N~~q~qL~~~~ee 281 (516)
++..+.++..+.-+.+.+.|...-++..++.++|..+... ..+|+..=..........+.++..+.++
T Consensus 28 ~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 28 SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 010177 282 RDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 282 ~~sl~~q~~~a~~qLdkLrk 301 (516)
+..+....+.++..+...++
T Consensus 108 l~~~~~~p~~aq~~l~~~~~ 127 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQ 127 (240)
T ss_pred HHHHHccHHHHHHHHHHHHH
No 456
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=46.82 E-value=44 Score=28.51 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~ 266 (516)
++|.++.+.+.+|+++|..+|.++ -+.|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qI---y~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQI---YDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 456666666777777777776653 333445554
No 457
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.68 E-value=3.4e+02 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=12.6
Q ss_pred CccceeeEEecCCCCchHhHHHHHH
Q 010177 439 DKVENYSITQSFNKQENWTKALKYT 463 (516)
Q Consensus 439 DkIgg~SIkl~~n~~e~WTkAlK~l 463 (516)
+.+...+|++..|=+.+-.+|+|-.
T Consensus 497 G~~~~p~l~i~SdLd~ql~~a~~~~ 521 (555)
T TIGR03545 497 GILEDPNLKINSNLDKLLAKAFKKE 521 (555)
T ss_pred cccCCCceeeecCHHHHHHHHHHHH
Confidence 3444455555444455555555544
No 458
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=46.56 E-value=2.9e+02 Score=32.82 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 262 (516)
.++.+.|.++++.+.++.+++..+-+.+....+.|-.+++
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333444444444444444444444444444444444333
No 459
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.55 E-value=6.5 Score=45.32 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 274 QLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 274 qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
++..++++..++....+....+.+.|+
T Consensus 392 e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 392 ENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333444444
No 460
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.55 E-value=3.2e+02 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 264 ~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
+=.+.-.++..|...+-...||..++++-...
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555544433
No 461
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=46.40 E-value=1.9e+02 Score=25.64 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q 272 (516)
|=.+|-+++..+-+...+|+.+|..+..-..+-+..+ +.+.+|+.++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~K 69 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHH
Confidence 3344556666666666666666666665555566666 7888888885
No 462
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=46.30 E-value=1.6e+02 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010177 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (516)
Q Consensus 238 ~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~ 276 (516)
.+.....+.++..+.....+.++..+|++++++-+.+..
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~ 52 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEID 52 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333334445555666666788888888888877766533
No 463
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=46.23 E-value=1.9e+02 Score=24.79 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
|++.++.+++.+..|...|.. .+ +++...+..--.|-..+.+.+-+||.....+.+ ..|.|+.+
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~--~~-----------~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~r 68 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKH--QK-----------DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIAR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHH
Q 010177 257 FKEL 260 (516)
Q Consensus 257 L~~e 260 (516)
|..+
T Consensus 69 Lr~e 72 (79)
T PF08581_consen 69 LRRE 72 (79)
T ss_dssp HHHH
T ss_pred HHHH
No 464
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=46.23 E-value=6.5e+02 Score=30.97 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEE 235 (516)
Q Consensus 222 Le~EE~~L~~eL~~ 235 (516)
+|.|-+++.+.+..
T Consensus 1087 ~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1087 LEKETKELKKKLDK 1100 (1189)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 465
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=46.10 E-value=5.4e+02 Score=30.01 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010177 182 DKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (516)
+..+..+++|+..-..-+....
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777888887777776654
No 466
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.10 E-value=1.8e+02 Score=24.40 Aligned_cols=26 Identities=50% Similarity=0.589 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
+|.+.+.++|++..++...+..++.+
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333
No 467
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.95 E-value=3.4e+02 Score=27.53 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
...+|+....+++++..+.... .+.=.....++.++.++......+.++...+.
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~-------~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQV-------EKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433 33334555666667777777777776655554
No 468
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=45.85 E-value=6.1e+02 Score=32.22 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
.....-+......+...+..|..-|++|.
T Consensus 699 ~~f~~ll~~k~~~~~~~~~r~~~gl~kl~ 727 (1395)
T KOG3595|consen 699 GTFKKLLKEKRSEVRLRKLRLELGLDKLK 727 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 34455566666666667777777777665
No 469
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.53 E-value=2.8e+02 Score=26.48 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHH
Q 010177 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA 213 (516)
Q Consensus 169 LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see 213 (516)
.+.+|---|+..+..=++........|..|...++......++++
T Consensus 54 y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~ 98 (204)
T PF04740_consen 54 YFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSSSNAIIDED 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccccccccHH
Confidence 367777888888888888888888888889888864333334443
No 470
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.99 E-value=3.4e+02 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 262 ERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 262 ~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
+..|..++.|..+|..+++-++...++..
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ 209 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTR 209 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766666555444433
No 471
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=44.89 E-value=6.7e+02 Score=30.73 Aligned_cols=29 Identities=7% Similarity=0.345 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~~ee~~sl~~q~~~ 291 (516)
.+|..+.....++...+.+......+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (1047)
T PRK10246 294 PHWERIQEQSAALAHTRQQIEEVNTRLQS 322 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444444433333
No 472
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.88 E-value=2.4e+02 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 273 FQLIAHQEERDAISSKI 289 (516)
Q Consensus 273 ~qL~~~~ee~~sl~~q~ 289 (516)
.++...+.+++...+++
T Consensus 196 ~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 196 AELDTLQAQIDAAIAAL 212 (301)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33334444433333333
No 473
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=2.5e+02 Score=28.09 Aligned_cols=39 Identities=38% Similarity=0.444 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
..+...+..++.+.+++.+++++.++.||.+..+++..+
T Consensus 69 ~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~ 107 (192)
T COG3334 69 ADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLE 107 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555556666777777777776644444433
No 474
>PF14282 FlxA: FlxA-like protein
Probab=44.73 E-value=2.3e+02 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRD 191 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E 191 (516)
+..++.|++++..+.++
T Consensus 18 ~~~I~~L~~Qi~~Lq~q 34 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQ 34 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 475
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.73 E-value=1.2e+02 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 010177 182 DKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
.+|++.+++....|..-|+.++.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~ 26 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVES 26 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 45777777777777777776654
No 476
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=44.55 E-value=3.8e+02 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
..+.+.++.+++.+..-+..|...|+....
T Consensus 8 ~~t~~~i~~eL~~~~~l~~~yta~l~~~~~ 37 (281)
T PF12018_consen 8 PATTEHIDTELEEAQELCYRYTAVLEKQSQ 37 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788999999999999999999988864
No 477
>PLN02678 seryl-tRNA synthetase
Probab=44.50 E-value=1.7e+02 Score=32.56 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010177 400 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 436 (516)
Q Consensus 400 AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 436 (516)
+...|=.++....+++. .+.|||++
T Consensus 301 s~~~~e~~l~~~~~i~~------------~L~lpyrv 325 (448)
T PLN02678 301 SWEMHEEMLKNSEDFYQ------------SLGIPYQV 325 (448)
T ss_pred HHHHHHHHHHHHHHHHH------------HcCCCeEE
Confidence 55555555555555543 26777776
No 478
>PRK14127 cell division protein GpsB; Provisional
Probab=44.37 E-value=83 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK-----------------SKRFKELEERYW 265 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e-----------------~~~L~~eE~~~W 265 (516)
+++.++.+.+..|-.+|.+++..|+.+.+++..++...+.. +++|..+|+..+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
No 479
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=44.32 E-value=3.6e+02 Score=31.07 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=9.3
Q ss_pred CCCCCceeeeCC
Q 010177 428 KCFKLPYKIEND 439 (516)
Q Consensus 428 ~~~~LPY~I~kD 439 (516)
+++..||.|..+
T Consensus 435 CP~~VPf~~~~~ 446 (591)
T KOG2412|consen 435 CPYVVPFHIVNS 446 (591)
T ss_pred CCccccccccCc
Confidence 468888888766
No 480
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=44.29 E-value=4e+02 Score=27.98 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010177 209 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE-----------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (516)
Q Consensus 209 ~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~-----------l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~ 277 (516)
..+-+++.+|...|.++.+.+.+++.+|..+.-. +..++..+......|...=.++|.....|......
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~ 85 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQK 85 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010177 278 HQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 278 ~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
..++++....-.++...-+|-|.
T Consensus 86 ~~~~r~~~~~~l~~~~~l~diLE 108 (338)
T PF04124_consen 86 ISEERKKASLLLENHDRLLDILE 108 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 481
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.12 E-value=72 Score=28.68 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
+-+...+..++++.+.+.++++.+++...+..++++.++.|.+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 482
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=44.00 E-value=4.4e+02 Score=28.31 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE---AAIEETEKQN-AEVNAELKELELK 253 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~---~eL~~LE~e~-~~l~~El~~le~e 253 (516)
+..++.++..+.++.+.|...+++.... .+....+.++..... .+++..+.+. .+...++..++..
T Consensus 141 i~~~~~~l~~~~~~~~~~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (421)
T TIGR03794 141 IGRLREELAALSREVGKQRGLLSRGLAT----------FKRDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETV 210 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 254 ~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
..++.+.+.++=..... ++.+.+.+...+.+++..++.+++
T Consensus 211 ~~~l~~~~~~l~~~~~~---~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 211 LQSLSQADFQLAGVAEK---ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHh
No 483
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.74 E-value=3.8e+02 Score=27.52 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVN------------------------------------------------ 244 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~------------------------------------------------ 244 (516)
+++++++..++.+..+..+-+..||..+..+.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 245 ----AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 245 ----~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
+|.........+|+++-.+.-+....++.++..++.+.-.|-.++.|.+.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.49 E-value=5.7e+02 Score=29.49 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
+.+.++.-+.+++.=...-..+++.++-+... -++++..+..|..=.++-...++++-.-.+++.+|+..|+.-...
T Consensus 267 ~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~---L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~ 343 (557)
T COG0497 267 LAELLEEALYELEEASEELRAYLDELEFDPNR---LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES 343 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC-Cee-eeccc
Q 010177 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG-EFG-TINNF 323 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG-~fG-TINGl 323 (516)
++++|++.=..+..+...-..+...|...-.+++-.- .+.|+....=...|.|.... ... |.+|+
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v--~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~ 410 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV--TAELKALAMEKARFTVELKPLEESPTADGA 410 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCCceEEEEeccCCCCCCcCCc
No 485
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.47 E-value=2.7e+02 Score=29.98 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELL 299 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl--------~~q~~~a~~qLdkL 299 (516)
+..+|.++|++|.+++++.-+....+.+++.+....-=.....-...+.++.+.+..+ ...++..+.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred h
Q 010177 300 K 300 (516)
Q Consensus 300 r 300 (516)
+
T Consensus 81 ~ 81 (330)
T PF07851_consen 81 R 81 (330)
T ss_pred H
No 486
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.42 E-value=2.2e+02 Score=24.76 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
|..|...+.++.+++.......-.++..++....++..+=.+.=+.|-+..+..-.+..|...|..++.-.+...+.|.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
No 487
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.27 E-value=5.4e+02 Score=29.18 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD--------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (516)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--------~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~ 242 (516)
..|.+.-++.-=++|..-.-.-..+...+.+|+....+ .+...++.+.++.|.+-...-.+.|.+-.++++-
T Consensus 336 Lq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKet 415 (527)
T PF15066_consen 336 LQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKET 415 (527)
T ss_pred hhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
+.-|+++++.....|++.=..-.++.|...-+-.+...-+..-+..++..+..-..|.+.
T Consensus 416 LqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEka 475 (527)
T PF15066_consen 416 LQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKA 475 (527)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
No 488
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.15 E-value=2.6e+02 Score=32.39 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 186 DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKL---EAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (516)
Q Consensus 186 e~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L---~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 262 (516)
+...+|+-.-..| .+.+.+...-..++--..+.+.+.++..++ .++++.|+.++.+++.|...||.|.-+++.+|.
T Consensus 599 ks~srekr~~~sf-dk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEr 677 (940)
T KOG4661|consen 599 KSRSREKRRERSF-DKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLER 677 (940)
T ss_pred HHHHHHhhhhhhH-HhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
+-.+....-.........++..+..|
T Consensus 678 eRM~ve~eRr~eqeRihreReelRrq 703 (940)
T KOG4661|consen 678 ERMKVEEERRDEQERIHREREELRRQ 703 (940)
T ss_pred HHHHHHHhhcchhhhhhhhHHHHhhc
No 489
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=43.04 E-value=4.9e+02 Score=28.60 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH
Q 010177 144 GFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIE 223 (516)
Q Consensus 144 ~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le 223 (516)
.++.-+.+|.|=|.|| ...||.---.-|++.-++.||+-..+-..-...-...|-.+++.. .+-+.+||
T Consensus 56 NinDP~~ALqRDf~~l--~Ek~D~EK~p~ct~spl~iL~~mM~qcKnmQe~~~s~LaAaE~kh---------rKli~dLE 124 (561)
T KOG1103|consen 56 NINDPFAALQRDFAIL--GEKIDEEKIPQCTESPLDILDKMMAQCKNMQENAASLLAAAEKKH---------RKLIKDLE 124 (561)
T ss_pred ccCChHHHHHHHHHHH--hccccccccceeccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl 285 (516)
++.+.-.+.-.+-..=-.-|++|.+.|+.+++=-.++-+.+-..-..+..+|.+-.....++
T Consensus 125 ~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqi 186 (561)
T KOG1103|consen 125 ADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQI 186 (561)
T ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.92 E-value=1.6e+02 Score=24.03 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~ 290 (516)
..-...|.+++....+.+.-|..++.|...+.. .+.+.+.-.+..+..++..+..++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=42.81 E-value=48 Score=30.27 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELL 299 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~--~~ee~~sl~~q----~~~a~~qLdkL 299 (516)
..++-..+..+|.+.-.+-+|+..+++.+..+-++....--+-..+...|.+ +++.--.-..+ ...-..+|.+|
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l 82 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH
Q ss_pred hhcccCCCceeeeecCCee
Q 010177 300 KRTNVLNDAFPIWHDGEFG 318 (516)
Q Consensus 300 rktNV~Nd~F~I~hdG~fG 318 (516)
|++-|||-+ -+||
T Consensus 83 -----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 -----YQEGFHICN-VHYG 95 (114)
T ss_pred -----HhccchhHH-HHhc
No 492
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=42.80 E-value=1.6e+02 Score=28.01 Aligned_cols=76 Identities=9% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEER----KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 213 e~l~~e~~~Le~EE~----~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
..+++|+..|++.-. .-..|+..|...=..+.+.+..+|.+ +++.+++.=.+..++.+.+..|-.++.++.+|
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~---lEkqqQeLkAdhS~lllhvk~~~~DLr~LsCQ 134 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAK---LEKQQQELKADHSTLLLHVKQFPKDLRSLSCQ 134 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHH
Q 010177 289 IEV 291 (516)
Q Consensus 289 ~~~ 291 (516)
+..
T Consensus 135 ma~ 137 (138)
T PF03954_consen 135 MAF 137 (138)
T ss_pred hhc
No 493
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.69 E-value=2.1e+02 Score=24.33 Aligned_cols=84 Identities=15% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL-ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l-e~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~ 291 (516)
..+......++.....+...+..++.+.+.+..+|... +.=...|++.++....+......+ ....+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~------~~~~l~~q~~~ 83 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKEN------KLKVLEQQLES 83 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_pred HHHHHHHHhhc
Q 010177 292 SQAHLELLKRT 302 (516)
Q Consensus 292 a~~qLdkLrkt 302 (516)
...+++.|+.+
T Consensus 84 l~~~l~~l~~~ 94 (127)
T smart00502 84 LTQKQEKLSHA 94 (127)
T ss_pred HHHHHHHHHHH
No 494
>PLN03086 PRLI-interacting factor K; Provisional
Probab=42.57 E-value=2.7e+02 Score=32.02 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 010177 221 KIEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ------ 293 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~-LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~------ 293 (516)
+|..-.++|++|.++ .++.+..+++|.+.-++..++-+..| ...-+..++++.+|+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIE-------------AAQRSRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------------HHHHHHhhccc---CCCceeeee---cCCeeeecc
Q 010177 294 ----------------------------AHLELLKRTNV---LNDAFPIWH---DGEFGTINN 322 (516)
Q Consensus 294 ----------------------------~qLdkLrktNV---~Nd~F~I~h---dG~fGTING 322 (516)
.-|++|.+.|+ |=.+|.|+. +|+++..++
T Consensus 71 ~~~~g~~~~~~~~~~~~~~~GdKI~LPpSaL~~L~~~~~~~~~Pm~F~l~~~~~~~~~~~~~~ 133 (567)
T PLN03086 71 QAGRGIVFSRIFEAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFRLSVVHQEGSGEMKDT 133 (567)
T ss_pred HcCCCeEEEEEeeccccCCCCCeEEcCHHHHHHHHhcCCCCCCCeEEEEeccccccccccccc
No 495
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.44 E-value=2.9e+02 Score=25.79 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSK-----RFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~-----~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~ 287 (516)
++-.+.+.+.+..++.|+++|+-+.+.+..+.. .....-.+|=.+.+.+.-+...+...+..+..
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.38 E-value=1.2e+02 Score=32.99 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQ----NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e----~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL 275 (516)
++..+++.|..|.+.+-+++..+.+. .+++.++.+++.+++.+++++.+....+++.+-..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 497
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=2.8e+02 Score=25.62 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAI------EETEKQNAEVNAELKELE 251 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL------~~LE~e~~~l~~El~~le 251 (516)
++..-..|..+++|+..|..-.++|+.+ +.+..+..+...+-++....-+-+ .+++..+.-+...|+=+.
T Consensus 7 mee~~~kyq~LQk~l~k~~~~rqkle~q----L~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~ 82 (120)
T KOG3478|consen 7 MEEEANKYQNLQKELEKYVESRQKLETQ----LQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFIS 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010177 252 LKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (516)
Q Consensus 252 ~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~ 283 (516)
.|+++++..-+.--+++....-.+..++...+
T Consensus 83 ~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 83 KEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 498
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.28 E-value=4.8e+02 Score=28.26 Aligned_cols=119 Identities=11% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
...+.-+|+-.+..-.+|......-.+.+.+.-. ..+-.-...|+.=..++...|+.+++-..-++.++..+-.+
T Consensus 200 vERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~-----~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~e 274 (359)
T PF10498_consen 200 VERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIE-----SALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQE 274 (359)
T ss_pred HHHHhhhheeeccCCcchHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 254 ~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
.......=.+.=..|+...-...+...++..+..+++..+.+++
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.24 E-value=4.4e+02 Score=27.93 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdk 298 (516)
+..|..+..+++...+...-..++|+.|-..|.=+..-|++.-+..=..+..++.+..+...++..++..+...+.+++.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 010177 299 LK 300 (516)
Q Consensus 299 Lr 300 (516)
|+
T Consensus 159 Lr 160 (302)
T PF09738_consen 159 LR 160 (302)
T ss_pred HH
No 500
>PHA03161 hypothetical protein; Provisional
Probab=42.01 E-value=89 Score=30.00 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F 309 (516)
.++..+++.-...++.+|+..+.|..-|......-....-+++-...++.++.+--...+...+..
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~-------------- 118 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS-------------- 118 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------------
Q ss_pred eeeecCCee-------eeccccCCCCCCCC
Q 010177 310 PIWHDGEFG-------TINNFRLGRLPKIP 332 (516)
Q Consensus 310 ~I~hdG~fG-------TINGlRLGrlp~~~ 332 (516)
.|+...| ||=..||+++|.+|
T Consensus 119 --~~~~~~~~~~~~~dtI~~WRLE~lPrcP 146 (150)
T PHA03161 119 --SQEEENSSENSIPDTIMQWRIEALPRVP 146 (150)
T ss_pred --cCCCCCCccCchhhHHHHHHHhhCCCCC
Done!