Query 010177
Match_columns 516
No_of_seqs 154 out of 247
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 8.7E-79 3E-83 585.9 16.5 192 277-477 2-206 (210)
2 3vp7_A Vacuolar protein sortin 100.0 2E-72 6.7E-77 544.7 14.9 175 302-477 1-217 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.7 1.1E-16 3.7E-21 137.7 15.1 90 213-302 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.3 1.2E-07 4.2E-12 65.9 1.2 27 142-168 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.5 0.21 7.3E-06 45.8 18.4 21 181-201 4-24 (284)
6 2v71_A Nuclear distribution pr 96.4 0.38 1.3E-05 45.8 19.6 60 176-244 17-76 (189)
7 1c1g_A Tropomyosin; contractIl 96.1 0.61 2.1E-05 42.7 19.1 9 184-192 28-36 (284)
8 2efr_A General control protein 96.0 0.95 3.3E-05 41.9 19.6 82 220-301 73-154 (155)
9 3q8t_A Beclin-1; autophagy, AT 95.8 0.39 1.3E-05 40.9 15.0 80 192-277 6-85 (96)
10 3oja_B Anopheles plasmodium-re 95.6 0.13 4.4E-06 54.7 14.1 31 220-250 512-542 (597)
11 3oja_B Anopheles plasmodium-re 95.4 0.23 7.8E-06 52.8 14.8 56 246-301 510-565 (597)
12 3na7_A HP0958; flagellar bioge 95.3 0.94 3.2E-05 44.1 17.9 11 366-376 222-232 (256)
13 2dfs_A Myosin-5A; myosin-V, in 95.2 0.14 4.9E-06 59.8 13.5 29 229-257 982-1010(1080)
14 3na7_A HP0958; flagellar bioge 95.2 1.4 4.8E-05 42.9 18.7 8 294-301 179-186 (256)
15 3hnw_A Uncharacterized protein 94.5 0.47 1.6E-05 42.9 12.2 69 214-282 65-133 (138)
16 3vkg_A Dynein heavy chain, cyt 94.3 0.82 2.8E-05 58.9 17.8 66 230-295 2013-2078(3245)
17 3o0z_A RHO-associated protein 94.1 3.8 0.00013 38.4 17.7 118 180-297 10-153 (168)
18 2v71_A Nuclear distribution pr 94.1 3.1 0.00011 39.6 17.4 74 228-301 46-126 (189)
19 2efr_A General control protein 93.7 4.4 0.00015 37.4 17.5 32 266-297 98-129 (155)
20 3vkg_A Dynein heavy chain, cyt 92.4 2.4 8.1E-05 54.9 17.6 34 171-204 1898-1931(3245)
21 2v4h_A NF-kappa-B essential mo 90.6 4.5 0.00015 35.5 12.3 23 277-299 87-109 (110)
22 3s4r_A Vimentin; alpha-helix, 90.5 6.5 0.00022 33.1 13.1 70 230-301 22-91 (93)
23 1l8d_A DNA double-strand break 90.4 6 0.00021 33.4 13.1 30 267-296 72-101 (112)
24 3bas_A Myosin heavy chain, str 90.2 5.8 0.0002 33.0 12.4 69 217-299 14-82 (89)
25 3oja_A Leucine-rich immune mol 90.0 5.5 0.00019 41.4 15.0 14 187-200 364-377 (487)
26 1ic2_A Tropomyosin alpha chain 89.6 7.3 0.00025 31.7 12.7 35 267-301 42-76 (81)
27 3a7p_A Autophagy protein 16; c 89.4 5.9 0.0002 36.5 12.8 23 232-254 69-91 (152)
28 3hnw_A Uncharacterized protein 88.4 5.4 0.00019 35.9 11.8 38 222-259 66-103 (138)
29 3oja_A Leucine-rich immune mol 87.6 11 0.00037 39.2 15.2 34 243-276 433-466 (487)
30 3bas_A Myosin heavy chain, str 87.1 12 0.00041 31.1 12.3 36 218-253 22-57 (89)
31 3u1c_A Tropomyosin alpha-1 cha 86.2 15 0.0005 31.2 14.6 64 178-247 4-67 (101)
32 2jee_A YIIU; FTSZ, septum, coi 85.6 13 0.00046 30.9 11.6 27 232-258 28-54 (81)
33 3u59_A Tropomyosin beta chain; 85.5 16 0.00053 30.9 14.6 20 179-198 5-24 (101)
34 2fxo_A Myosin heavy chain, car 85.3 19 0.00065 31.7 16.0 9 242-250 80-88 (129)
35 2zqm_A Prefoldin beta subunit 84.7 6.1 0.00021 33.3 9.7 39 218-256 71-109 (117)
36 3swk_A Vimentin; cytoskeleton, 84.7 16 0.00054 30.3 12.7 36 267-302 50-85 (86)
37 3ghg_A Fibrinogen alpha chain; 84.5 20 0.00069 38.9 15.4 19 288-306 177-195 (562)
38 3iox_A AGI/II, PA; alpha helix 84.4 14 0.00049 39.7 14.2 95 189-288 8-102 (497)
39 3ol1_A Vimentin; structural ge 84.2 21 0.0007 31.2 13.8 29 175-203 19-47 (119)
40 3nmd_A CGMP dependent protein 83.8 3.4 0.00012 33.7 7.1 44 214-257 23-66 (72)
41 1l8d_A DNA double-strand break 83.5 15 0.00052 30.8 11.6 36 219-254 66-101 (112)
42 3s9g_A Protein hexim1; cyclin 82.8 20 0.0007 30.9 11.8 63 194-261 18-81 (104)
43 1ic2_A Tropomyosin alpha chain 82.3 13 0.00043 30.3 10.2 30 221-250 38-67 (81)
44 1deq_A Fibrinogen (alpha chain 81.9 35 0.0012 35.7 15.5 41 289-336 181-222 (390)
45 3mq9_A Bone marrow stromal ant 81.8 13 0.00044 38.4 12.5 24 231-254 443-466 (471)
46 3a7p_A Autophagy protein 16; c 81.7 20 0.00068 33.0 12.2 64 217-287 68-131 (152)
47 3tnu_B Keratin, type II cytosk 81.1 22 0.00076 31.1 12.1 34 218-251 37-70 (129)
48 3ghg_A Fibrinogen alpha chain; 80.8 15 0.00053 39.8 12.8 65 266-358 131-195 (562)
49 2ocy_A RAB guanine nucleotide 80.7 35 0.0012 31.4 16.6 32 270-301 112-143 (154)
50 3tnu_A Keratin, type I cytoske 79.5 20 0.00067 31.6 11.2 29 222-250 43-71 (131)
51 2w83_C C-JUN-amino-terminal ki 79.3 15 0.00051 30.3 9.4 44 213-256 33-76 (77)
52 2v66_B Nuclear distribution pr 79.0 33 0.0011 30.0 15.3 86 178-268 5-90 (111)
53 1fxk_A Prefoldin; archaeal pro 78.9 9.1 0.00031 31.8 8.5 37 218-254 66-102 (107)
54 3opc_A Uncharacterized protein 77.9 37 0.0013 30.0 12.7 109 187-301 12-131 (154)
55 3mq9_A Bone marrow stromal ant 77.8 35 0.0012 35.1 14.3 69 229-301 402-471 (471)
56 1ci6_A Transcription factor AT 77.6 7.7 0.00026 30.4 7.1 39 221-259 20-58 (63)
57 3uux_B Mitochondrial division 77.2 22 0.00075 35.0 11.6 74 220-293 152-225 (242)
58 3ol1_A Vimentin; structural ge 75.7 40 0.0014 29.3 16.1 9 195-203 18-26 (119)
59 2p22_A Suppressor protein STP2 75.3 34 0.0011 32.1 11.9 79 215-293 47-135 (174)
60 3cvf_A Homer-3, homer protein 75.0 23 0.00079 29.3 9.5 38 220-257 16-53 (79)
61 1m1j_C Fibrinogen gamma chain; 74.9 39 0.0013 35.5 13.7 24 179-202 44-67 (409)
62 3iv1_A Tumor susceptibility ge 74.9 27 0.00091 28.9 9.8 34 225-258 40-73 (78)
63 3u1c_A Tropomyosin alpha-1 cha 74.8 38 0.0013 28.7 15.0 52 229-280 28-79 (101)
64 3cve_A Homer protein homolog 1 74.6 33 0.0011 27.9 11.1 40 218-257 8-47 (72)
65 3ajw_A Flagellar FLIJ protein; 74.5 42 0.0014 29.0 13.3 96 178-273 21-130 (150)
66 3cvf_A Homer-3, homer protein 74.4 26 0.0009 28.9 9.7 36 222-257 4-39 (79)
67 1wt6_A Myotonin-protein kinase 74.4 12 0.00041 31.2 7.6 42 216-257 30-71 (81)
68 2i1j_A Moesin; FERM, coiled-co 72.5 1.6 5.3E-05 47.7 2.5 9 178-186 302-310 (575)
69 2v4h_A NF-kappa-B essential mo 72.4 49 0.0017 28.9 12.7 73 227-303 34-106 (110)
70 2oto_A M protein; helical coil 72.4 54 0.0019 29.4 14.4 58 180-243 26-83 (155)
71 2b5u_A Colicin E3; high resolu 72.2 46 0.0016 36.0 13.4 26 232-257 315-340 (551)
72 2ve7_A Kinetochore protein HEC 72.2 12 0.0004 37.9 8.6 25 230-254 184-208 (315)
73 3mq7_A Bone marrow stromal ant 71.7 54 0.0018 29.1 13.2 23 232-254 72-94 (121)
74 3u59_A Tropomyosin beta chain; 71.7 44 0.0015 28.1 15.0 51 229-279 28-78 (101)
75 2avr_X Adhesion A; antiparalle 70.2 24 0.00082 31.3 9.1 18 280-297 71-88 (119)
76 2fup_A Hypothetical protein PA 69.7 20 0.00068 31.4 8.7 114 187-303 11-134 (157)
77 2i1j_A Moesin; FERM, coiled-co 69.6 3.7 0.00013 44.8 4.6 18 187-204 332-349 (575)
78 1hjb_A Ccaat/enhancer binding 69.4 22 0.00074 29.8 8.3 40 220-259 32-71 (87)
79 3fpp_A Macrolide-specific effl 68.4 20 0.00069 35.1 9.3 28 273-300 121-148 (341)
80 4dk0_A Putative MACA; alpha-ha 68.0 26 0.00089 34.6 10.1 30 272-301 121-150 (369)
81 1wle_A Seryl-tRNA synthetase; 68.0 28 0.00097 37.4 11.0 38 216-253 69-106 (501)
82 4etp_A Kinesin-like protein KA 67.7 15 0.0005 38.3 8.5 12 333-344 120-131 (403)
83 2v66_B Nuclear distribution pr 67.5 63 0.0022 28.2 12.8 69 174-255 33-101 (111)
84 3tnu_A Keratin, type I cytoske 67.3 65 0.0022 28.2 11.6 16 228-243 42-57 (131)
85 2fxo_A Myosin heavy chain, car 66.4 67 0.0023 28.1 18.1 10 279-288 96-105 (129)
86 3viq_B Mating-type switching p 66.3 17 0.00058 30.5 6.9 10 263-272 45-54 (85)
87 2dq0_A Seryl-tRNA synthetase; 64.8 25 0.00087 37.1 9.8 91 214-313 28-118 (455)
88 1t2k_D Cyclic-AMP-dependent tr 64.0 24 0.00083 27.0 7.1 35 224-258 22-56 (61)
89 3hhm_B NISH2 P85alpha; PI3KCA, 63.2 64 0.0022 33.3 12.2 61 218-285 199-259 (373)
90 3tnu_B Keratin, type II cytosk 63.2 76 0.0026 27.6 13.0 60 223-285 35-94 (129)
91 3u06_A Protein claret segregat 63.0 18 0.00062 37.8 8.2 31 221-251 7-37 (412)
92 4e61_A Protein BIM1; EB1-like 63.0 76 0.0026 27.6 11.1 45 230-274 10-54 (106)
93 3nmd_A CGMP dependent protein 62.6 29 0.00098 28.3 7.4 8 293-300 60-67 (72)
94 1ik9_A DNA repair protein XRCC 62.5 55 0.0019 31.3 10.8 8 170-177 130-137 (213)
95 3lss_A Seryl-tRNA synthetase; 62.5 48 0.0016 35.5 11.4 37 216-252 36-72 (484)
96 3ljm_A Coil Ser L9C; de novo d 61.8 11 0.00036 25.5 3.9 26 233-258 3-28 (31)
97 1f5n_A Interferon-induced guan 61.2 1.9E+02 0.0065 31.6 20.4 16 287-302 567-582 (592)
98 2lw1_A ABC transporter ATP-bin 61.0 64 0.0022 26.4 9.6 23 217-239 22-44 (89)
99 3qne_A Seryl-tRNA synthetase, 60.8 32 0.0011 36.9 9.7 88 216-314 32-121 (485)
100 3jsv_C NF-kappa-B essential mo 60.8 76 0.0026 27.1 10.0 23 278-300 66-88 (94)
101 2l5g_B Putative uncharacterize 60.2 21 0.0007 26.3 5.5 29 229-257 7-35 (42)
102 3ibp_A Chromosome partition pr 59.9 77 0.0026 32.1 11.6 80 170-250 15-102 (302)
103 3mq7_A Bone marrow stromal ant 59.7 94 0.0032 27.5 13.5 10 179-188 28-37 (121)
104 3etw_A Adhesin A; antiparallel 58.8 52 0.0018 29.1 9.1 15 283-297 74-88 (119)
105 1gu4_A CAAT/enhancer binding p 58.7 32 0.0011 28.2 7.2 39 220-258 32-70 (78)
106 2wt7_A Proto-oncogene protein 58.6 28 0.00095 27.0 6.6 34 225-258 24-57 (63)
107 2pms_C Pneumococcal surface pr 57.6 66 0.0023 28.7 9.5 112 180-299 10-122 (125)
108 2oto_A M protein; helical coil 57.5 1.1E+02 0.0036 27.5 18.7 22 181-202 34-55 (155)
109 1fxk_C Protein (prefoldin); ar 57.2 86 0.003 27.0 10.3 82 176-257 15-128 (133)
110 4etp_A Kinesin-like protein KA 57.0 35 0.0012 35.5 9.0 21 232-252 11-31 (403)
111 1go4_E MAD1 (mitotic arrest de 56.8 45 0.0015 28.7 8.1 27 177-203 13-39 (100)
112 3iox_A AGI/II, PA; alpha helix 56.4 1.6E+02 0.0054 31.8 13.9 28 176-203 9-40 (497)
113 2e7s_A RAB guanine nucleotide 56.3 58 0.002 29.4 9.1 13 288-300 118-130 (135)
114 2k48_A Nucleoprotein; viral pr 55.9 75 0.0026 27.6 9.3 17 280-296 82-98 (107)
115 2wt7_B Transcription factor MA 55.3 26 0.00088 29.6 6.2 11 279-289 75-85 (90)
116 2yy0_A C-MYC-binding protein; 53.7 21 0.00073 27.2 5.0 28 220-247 22-49 (53)
117 3qh9_A Liprin-beta-2; coiled-c 53.7 96 0.0033 25.8 10.8 38 221-258 23-60 (81)
118 4dzn_A Coiled-coil peptide CC- 53.5 27 0.00092 23.8 4.8 21 237-257 8-28 (33)
119 3i00_A HIP-I, huntingtin-inter 53.0 1.2E+02 0.0041 26.7 11.6 20 175-194 14-33 (120)
120 2b9c_A Striated-muscle alpha t 52.6 1.3E+02 0.0046 27.1 13.2 101 181-287 22-122 (147)
121 3haj_A Human pacsin2 F-BAR; pa 51.7 2.3E+02 0.0079 29.6 14.4 29 263-291 207-235 (486)
122 3ghg_C Fibrinogen gamma chain; 51.3 1.6E+02 0.0053 31.1 12.7 25 178-202 40-67 (411)
123 1ykh_B RNA polymerase II holoe 51.1 1.3E+02 0.0043 26.7 10.4 71 167-244 49-119 (132)
124 1j1d_C Troponin I, TNI; THIN f 50.9 1.4E+02 0.0047 26.8 11.8 20 178-197 28-47 (133)
125 1uix_A RHO-associated kinase; 50.7 99 0.0034 25.1 10.6 45 230-274 3-47 (71)
126 1go4_E MAD1 (mitotic arrest de 50.6 27 0.00092 30.1 5.7 32 225-256 13-44 (100)
127 3fpp_A Macrolide-specific effl 50.5 68 0.0023 31.2 9.5 24 273-296 128-151 (341)
128 2aze_B Transcription factor E2 50.2 30 0.001 29.8 6.0 34 226-259 8-41 (106)
129 1ses_A Seryl-tRNA synthetase; 50.1 39 0.0013 35.3 8.0 86 216-312 27-112 (421)
130 3ra3_B P2F; coiled coil domain 49.5 14 0.00046 24.5 2.8 22 236-257 5-26 (28)
131 1yke_B RNA polymerase II holoe 49.0 1.1E+02 0.0039 27.7 10.0 33 211-243 86-118 (151)
132 1lwu_C Fibrinogen gamma chain; 48.9 48 0.0016 33.8 8.3 13 333-345 128-140 (323)
133 1ci6_A Transcription factor AT 48.8 49 0.0017 25.7 6.5 29 216-244 29-57 (63)
134 1jnm_A Proto-oncogene C-JUN; B 48.6 26 0.0009 27.0 4.9 34 224-257 22-55 (62)
135 3u06_A Protein claret segregat 48.5 44 0.0015 34.9 8.1 33 225-257 4-36 (412)
136 4dk0_A Putative MACA; alpha-ha 48.3 71 0.0024 31.4 9.3 47 267-321 123-169 (369)
137 3cve_A Homer protein homolog 1 48.2 1.1E+02 0.0037 24.8 11.1 30 228-257 4-33 (72)
138 1m1j_B Fibrinogen beta chain; 47.8 2.9E+02 0.0098 29.5 15.2 28 178-205 88-115 (464)
139 1f5n_A Interferon-induced guan 47.4 1.1E+02 0.0036 33.6 11.2 32 173-204 439-470 (592)
140 3qne_A Seryl-tRNA synthetase, 47.0 91 0.0031 33.4 10.4 27 398-436 310-336 (485)
141 1g6u_A Domain swapped dimer; d 46.7 83 0.0028 23.0 6.8 17 229-245 25-41 (48)
142 2v0o_A FCHO2, FCH domain only 46.2 1.9E+02 0.0065 27.1 18.2 22 181-202 131-152 (276)
143 2lw1_A ABC transporter ATP-bin 46.2 79 0.0027 25.8 7.8 19 184-202 23-41 (89)
144 1a93_B MAX protein, coiled coi 45.9 30 0.001 24.5 4.2 25 227-251 10-34 (34)
145 2dq0_A Seryl-tRNA synthetase; 45.6 1E+02 0.0035 32.5 10.5 28 398-437 314-341 (455)
146 3a2a_A Voltage-gated hydrogen 44.9 58 0.002 25.3 6.1 35 218-252 12-46 (58)
147 3iv1_A Tumor susceptibility ge 44.6 1.3E+02 0.0045 24.7 10.1 65 175-245 10-74 (78)
148 1m1j_B Fibrinogen beta chain; 44.6 3.2E+02 0.011 29.2 17.6 11 178-188 102-112 (464)
149 1hjb_A Ccaat/enhancer binding 44.6 41 0.0014 28.2 5.8 36 214-249 40-75 (87)
150 1ses_A Seryl-tRNA synthetase; 44.1 1.2E+02 0.0041 31.6 10.6 27 398-436 289-315 (421)
151 2xnx_M M protein, M1-BC1; cell 43.8 1.9E+02 0.0065 26.4 10.7 17 292-308 99-115 (146)
152 1s1c_X RHO-associated, coiled- 43.8 1.3E+02 0.0044 24.4 9.9 35 228-262 3-37 (71)
153 1x79_B RAB GTPase binding effe 43.3 1.7E+02 0.0057 25.6 12.0 34 255-288 59-92 (112)
154 1deq_A Fibrinogen (alpha chain 42.8 2.4E+02 0.0081 29.6 12.3 17 344-360 184-200 (390)
155 2wt7_B Transcription factor MA 42.1 1.6E+02 0.0053 24.9 9.4 27 232-258 49-75 (90)
156 1nlw_A MAD protein, MAX dimeri 41.7 31 0.0011 28.1 4.6 31 219-249 49-79 (80)
157 3efg_A Protein SLYX homolog; x 41.2 1E+02 0.0035 25.1 7.6 40 214-253 11-50 (78)
158 4emc_A Monopolin complex subun 41.1 2E+02 0.0069 27.3 10.6 36 220-255 23-58 (190)
159 1t2k_D Cyclic-AMP-dependent tr 40.7 65 0.0022 24.6 6.0 23 221-243 33-55 (61)
160 2fic_A Bridging integrator 1; 40.6 2.3E+02 0.008 26.4 14.0 15 250-264 202-216 (251)
161 2wt7_A Proto-oncogene protein 40.5 74 0.0025 24.6 6.4 24 220-243 33-56 (63)
162 4dzn_A Coiled-coil peptide CC- 40.4 57 0.002 22.2 4.8 24 228-251 6-29 (33)
163 2f1m_A Acriflavine resistance 40.0 83 0.0028 29.7 8.0 20 278-297 110-129 (277)
164 3ter_A Mammalian stromal inter 39.8 1.5E+02 0.0053 26.7 9.1 44 271-314 43-87 (136)
165 1nkp_A C-MYC, MYC proto-oncoge 39.7 39 0.0013 27.9 4.9 33 219-251 54-86 (88)
166 1nkp_B MAX protein, MYC proto- 39.6 31 0.0011 27.8 4.2 30 220-249 50-79 (83)
167 1j1e_C Troponin I, TNI; THIN f 39.5 2.5E+02 0.0084 26.5 11.6 20 178-197 28-47 (180)
168 1joc_A EEA1, early endosomal a 39.1 1.9E+02 0.0065 25.1 9.6 12 232-243 19-30 (125)
169 2dq3_A Seryl-tRNA synthetase; 38.8 28 0.00096 36.4 4.8 92 214-314 27-118 (425)
170 2yy0_A C-MYC-binding protein; 38.7 59 0.002 24.7 5.3 22 217-238 26-47 (53)
171 1m1j_C Fibrinogen gamma chain; 37.5 3.8E+02 0.013 28.0 14.3 30 272-301 104-133 (409)
172 1g6u_A Domain swapped dimer; d 37.5 1.2E+02 0.0041 22.2 6.7 21 233-253 22-42 (48)
173 4fi5_A Nucleoprotein; structur 37.4 1.7E+02 0.0059 25.6 8.7 31 210-240 22-52 (113)
174 3i00_A HIP-I, huntingtin-inter 37.1 2.1E+02 0.0073 25.0 11.8 16 221-236 19-34 (120)
175 3vmx_A Voltage-gated hydrogen 37.0 1.3E+02 0.0046 22.6 7.1 35 218-252 5-39 (48)
176 2xu6_A MDV1 coiled coil; prote 36.5 1.7E+02 0.0059 23.8 9.4 13 233-245 44-56 (72)
177 1gmj_A ATPase inhibitor; coile 36.5 1E+02 0.0035 25.7 6.9 25 226-250 53-77 (84)
178 1x79_B RAB GTPase binding effe 35.7 2.2E+02 0.0076 24.8 11.9 22 179-200 16-37 (112)
179 3etv_A Protein transport prote 35.5 1.1E+02 0.0038 31.6 8.4 56 181-236 14-71 (355)
180 3m9b_A Proteasome-associated A 35.5 42 0.0014 33.2 5.2 7 323-329 122-128 (251)
181 2eqb_B RAB guanine nucleotide 35.4 2.1E+02 0.0072 24.4 12.7 6 288-293 84-89 (97)
182 3rrk_A V-type ATPase 116 kDa s 35.3 1.3E+02 0.0043 29.9 8.9 48 220-269 95-143 (357)
183 3haj_A Human pacsin2 F-BAR; pa 35.0 4.1E+02 0.014 27.7 14.0 20 320-340 287-306 (486)
184 4emc_A Monopolin complex subun 34.6 2.5E+02 0.0084 26.7 10.0 24 295-318 80-107 (190)
185 3tkl_B LIDA protein, substrate 34.5 76 0.0026 31.0 6.6 46 178-223 44-91 (267)
186 2eqb_B RAB guanine nucleotide 34.5 2.2E+02 0.0074 24.3 14.6 24 179-202 8-31 (97)
187 3onj_A T-snare VTI1; helix, HA 34.4 2E+02 0.0068 23.9 10.7 26 232-257 35-60 (97)
188 1zxa_A CGMP-dependent protein 34.3 68 0.0023 25.7 5.3 28 230-257 24-51 (67)
189 2qyw_A Vesicle transport throu 34.0 2.1E+02 0.0072 24.0 10.6 26 232-257 50-75 (102)
190 3bua_E HSNM1B, DNA cross-LINK 33.6 19 0.00064 25.4 1.6 18 457-474 5-22 (36)
191 1ik9_A DNA repair protein XRCC 33.4 3.2E+02 0.011 26.0 13.1 50 233-282 148-198 (213)
192 3tnf_B LIDA, RAS-related prote 33.3 1.9E+02 0.0066 29.3 9.5 49 175-223 24-74 (384)
193 4h22_A Leucine-rich repeat fli 33.1 2.4E+02 0.0081 24.4 10.8 26 225-250 31-56 (103)
194 4h22_A Leucine-rich repeat fli 32.9 2.4E+02 0.0082 24.3 10.8 32 223-254 22-53 (103)
195 4b4t_K 26S protease regulatory 32.9 59 0.002 34.1 6.1 7 332-338 168-174 (428)
196 1wle_A Seryl-tRNA synthetase; 32.8 3.3E+02 0.011 29.2 12.0 27 398-436 345-371 (501)
197 2zdi_C Prefoldin subunit alpha 32.8 1.9E+02 0.0065 25.5 8.7 42 216-257 97-138 (151)
198 2ic6_A Nucleocapsid protein; h 32.8 2.1E+02 0.0071 23.6 8.9 17 281-297 53-69 (78)
199 1fxk_A Prefoldin; archaeal pro 32.4 2E+02 0.007 23.4 11.8 20 280-299 79-98 (107)
200 3frt_A Charged multivesicular 32.2 3.4E+02 0.012 25.9 12.4 40 212-251 9-48 (218)
201 1t6f_A Geminin; coiled-coil, c 32.1 79 0.0027 22.5 4.7 24 234-257 10-33 (37)
202 3lss_A Seryl-tRNA synthetase; 32.0 1.8E+02 0.0062 31.1 9.8 26 400-437 335-360 (484)
203 2gd5_A Charged multivesicular 31.7 3E+02 0.01 25.0 11.3 39 213-251 10-48 (179)
204 3bbp_D GRIP and coiled-coil do 31.1 31 0.0011 28.0 2.8 49 213-261 18-66 (71)
205 2l5g_B Putative uncharacterize 30.3 1.1E+02 0.0038 22.5 5.3 26 213-238 5-30 (42)
206 1fmh_A General control protein 30.3 79 0.0027 21.6 4.2 15 232-246 9-23 (33)
207 3m9b_A Proteasome-associated A 30.1 46 0.0016 32.9 4.4 32 279-310 74-105 (251)
208 4ad8_A DNA repair protein RECN 30.0 4.9E+02 0.017 27.0 16.0 15 399-413 433-447 (517)
209 1zhc_A Hypothetical protein HP 29.6 1.2E+02 0.0041 24.4 6.1 39 220-259 20-58 (76)
210 1lwu_C Fibrinogen gamma chain; 29.2 97 0.0033 31.5 6.8 8 363-370 89-96 (323)
211 2xnx_M M protein, M1-BC1; cell 29.1 2.6E+02 0.0089 25.5 8.8 21 218-238 34-54 (146)
212 1fzc_C Fibrin; blood coagulati 28.7 31 0.001 35.2 3.0 12 334-345 120-131 (319)
213 2dgc_A Protein (GCN4); basic d 28.2 76 0.0026 24.7 4.6 26 227-252 33-58 (63)
214 4dci_A Uncharacterized protein 28.0 3.5E+02 0.012 24.7 11.1 24 279-302 83-106 (150)
215 2ke4_A CDC42-interacting prote 27.9 2.7E+02 0.0094 23.4 9.6 31 174-204 20-50 (98)
216 2efk_A CDC42-interacting prote 27.5 4E+02 0.014 25.2 18.0 6 411-416 263-268 (301)
217 3ghg_C Fibrinogen gamma chain; 27.4 5.6E+02 0.019 26.9 15.3 28 177-204 25-52 (411)
218 1jnm_A Proto-oncogene C-JUN; B 27.4 57 0.0019 25.1 3.7 19 222-240 34-52 (62)
219 3mov_A Lamin-B1; LMNB1, B-type 27.4 1.4E+02 0.0046 25.2 6.3 23 230-252 36-58 (95)
220 3he5_B Synzip2; heterodimeric 27.4 1.9E+02 0.0065 21.4 6.9 9 222-230 22-30 (52)
221 4ad8_A DNA repair protein RECN 27.4 5.4E+02 0.019 26.7 17.7 18 297-314 349-366 (517)
222 3etw_A Adhesin A; antiparallel 27.2 3.2E+02 0.011 24.0 14.0 10 295-304 103-112 (119)
223 2gd5_A Charged multivesicular 27.0 3.6E+02 0.012 24.5 13.4 25 214-238 25-49 (179)
224 3m91_A Proteasome-associated A 25.7 2.2E+02 0.0074 21.5 6.5 29 229-257 14-42 (51)
225 3oa7_A Head morphogenesis prot 25.5 4.2E+02 0.015 25.4 10.0 63 193-258 9-71 (206)
226 2w83_C C-JUN-amino-terminal ki 25.4 2.8E+02 0.0097 22.8 10.6 37 221-257 27-63 (77)
227 2dq3_A Seryl-tRNA synthetase; 25.2 87 0.003 32.6 5.8 26 398-435 293-318 (425)
228 2p22_A Suppressor protein STP2 25.2 2.9E+02 0.01 25.7 8.8 38 264-301 54-91 (174)
229 1lrz_A FEMA, factor essential 25.1 1.9E+02 0.0065 29.5 8.3 13 303-315 311-323 (426)
230 2aze_B Transcription factor E2 25.1 1.2E+02 0.0041 26.0 5.7 18 242-259 10-27 (106)
231 2xdj_A Uncharacterized protein 24.9 2.9E+02 0.0099 22.7 9.6 38 228-265 24-61 (83)
232 2w6a_A ARF GTPase-activating p 24.9 2.6E+02 0.0087 22.1 8.5 40 222-261 18-57 (63)
233 1gu4_A CAAT/enhancer binding p 24.8 1.4E+02 0.0046 24.4 5.7 30 215-244 41-70 (78)
234 3plt_A Sphingolipid long chain 24.7 4.9E+02 0.017 25.3 16.1 75 181-258 78-158 (234)
235 3gp4_A Transcriptional regulat 24.5 2.8E+02 0.0095 24.3 8.2 12 239-250 89-100 (142)
236 3ghg_B Fibrinogen beta chain; 24.5 4.1E+02 0.014 28.4 10.7 36 169-205 75-110 (461)
237 3tq7_B Microtubule-associated 24.4 85 0.0029 26.0 4.4 26 178-203 10-35 (82)
238 3viq_B Mating-type switching p 24.1 73 0.0025 26.7 3.9 27 228-254 5-31 (85)
239 1m1j_A Fibrinogen alpha subuni 23.9 7E+02 0.024 26.8 17.5 19 289-307 179-197 (491)
240 1qvr_A CLPB protein; coiled co 23.7 2.2E+02 0.0077 31.7 9.1 14 164-177 328-341 (854)
241 2ykt_A Brain-specific angiogen 23.6 5.1E+02 0.017 25.1 15.4 112 178-303 38-151 (253)
242 4dyl_A Tyrosine-protein kinase 23.5 5.9E+02 0.02 25.8 13.5 132 169-301 91-226 (406)
243 1m1j_A Fibrinogen alpha subuni 23.4 7.1E+02 0.024 26.7 14.0 138 162-315 29-178 (491)
244 3thf_A Protein shroom; coiled- 23.4 4.8E+02 0.016 24.7 13.5 40 265-304 147-186 (190)
245 1x8y_A Lamin A/C; structural p 23.4 2.5E+02 0.0084 22.9 7.1 60 232-294 4-63 (86)
246 3ra3_A P1C; coiled coil domain 23.2 40 0.0014 22.2 1.7 14 239-252 8-21 (28)
247 1nkp_B MAX protein, MYC proto- 23.1 82 0.0028 25.3 4.1 26 228-253 51-76 (83)
248 2p22_C Protein SRN2; endosome, 23.1 4.7E+02 0.016 24.5 11.3 18 247-264 92-109 (192)
249 3n5l_A Binding protein compone 22.6 3.1E+02 0.011 26.4 8.9 28 176-204 216-243 (310)
250 1deb_A APC protein, adenomatou 22.6 2.6E+02 0.0089 21.4 8.2 27 212-238 5-31 (54)
251 1vcs_A Vesicle transport throu 22.5 84 0.0029 26.5 4.2 26 232-257 39-64 (102)
252 3he5_B Synzip2; heterodimeric 22.3 2.4E+02 0.0083 20.9 6.7 31 221-251 14-44 (52)
253 3gpv_A Transcriptional regulat 22.3 2.4E+02 0.0081 24.8 7.3 15 237-251 101-115 (148)
254 3ajw_A Flagellar FLIJ protein; 22.2 3.6E+02 0.012 22.9 12.2 30 224-253 19-48 (150)
255 2dgc_A Protein (GCN4); basic d 22.2 1.4E+02 0.0048 23.2 5.1 28 230-257 29-56 (63)
256 3m91_A Proteasome-associated A 22.0 2.6E+02 0.0089 21.1 7.2 27 221-247 20-46 (51)
257 3tnf_B LIDA, RAS-related prote 22.0 6.4E+02 0.022 25.6 12.1 62 193-257 4-80 (384)
258 4etp_B Spindle POLE BODY-assoc 22.0 2.2E+02 0.0077 29.2 7.8 54 233-293 5-58 (333)
259 2ve7_C Kinetochore protein NUF 21.6 13 0.00043 36.5 -1.4 30 295-327 191-220 (250)
260 3vp9_A General transcriptional 21.3 2E+02 0.0067 24.4 6.1 18 178-195 16-33 (92)
261 1zhc_A Hypothetical protein HP 21.3 1.7E+02 0.0059 23.4 5.6 20 232-251 18-37 (76)
262 2f1m_A Acriflavine resistance 21.2 2.9E+02 0.0098 25.9 8.2 27 275-301 100-126 (277)
263 3t97_C Nuclear pore glycoprote 21.0 59 0.002 25.7 2.7 37 217-253 19-55 (64)
264 3uux_B Mitochondrial division 21.0 6E+02 0.02 24.9 10.6 12 66-77 18-31 (242)
265 2r2v_A GCN4 leucine zipper; co 20.5 1.9E+02 0.0066 20.3 4.8 21 236-256 6-26 (34)
266 2e7s_A RAB guanine nucleotide 20.4 4E+02 0.014 23.9 8.3 15 182-196 21-35 (135)
267 3d5a_X RF1, peptide chain rele 20.3 1.6E+02 0.0055 30.4 6.5 17 397-413 262-278 (354)
268 3he4_A Synzip6; heterodimeric 20.2 2.8E+02 0.0096 20.8 6.0 18 222-239 29-46 (56)
269 4akg_A Glutathione S-transfera 20.1 4.1E+02 0.014 34.4 11.2 69 180-248 2143-2219(2695)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=8.7e-79 Score=585.92 Aligned_cols=192 Identities=44% Similarity=0.900 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010177 277 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (516)
Q Consensus 277 ~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 356 (516)
++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeecCCCceEEecCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 010177 357 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL 432 (516)
Q Consensus 357 ~~~f~~~YkLvPmGS~SkI~~~~~--~~~eLyg~~--~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~L 432 (516)
+++|+ +|+|+||||+|+|++..+ .+|+||+++ ++|++++||+||+|||+||+||++++++.+ ++++|
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l 152 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL 152 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence 99999 999999999999998653 589999754 789999999999999999999999998654 36999
Q ss_pred ceee--eCCccc-------eeeEEecCCCCchHhHHHHHHHHhHHHHHHHHhhC
Q 010177 433 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN 477 (516)
Q Consensus 433 PY~I--~kDkIg-------g~SIkl~~n~~e~WTkAlK~lLtNlKwlLawv~~~ 477 (516)
||+| ++|||+ |+|||+++|++|+||+|||||||||||+|||++..
T Consensus 153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~ 206 (210)
T 4ddp_A 153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 206 (210)
T ss_dssp SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 799997 79999999999999999999999999999999853
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-72 Score=544.68 Aligned_cols=175 Identities=31% Similarity=0.559 Sum_probs=150.1
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEe----
Q 010177 302 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 377 (516)
Q Consensus 302 tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~YkLvPmGS~SkI~~---- 377 (516)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ---cC---------CceeecccCCC-----Ccc-ccchhHHHHHHHHHHHHHHHHHhccCC------------------C
Q 010177 378 ---SN---------NNTYELFGPVN-----LFW-STRYDKAMTLFLSCLKDFAEFANSKDQ------------------E 421 (516)
Q Consensus 378 ---~~---------~~~~eLyg~~~-----lf~-~~kFD~AM~afL~cl~q~~e~~~~~d~------------------~ 421 (516)
.. ..+|+||++++ +|+ ++|||+||+|||+||+||++|+++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNA 159 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 32 25799998864 575 469999999999999999999875432 0
Q ss_pred CCCCCCC-CCCCceeeeCCccceeeEEecC-CCCchHhHHHHHHHHhHHHHHHHHhhC
Q 010177 422 NNIPPDK-CFKLPYKIENDKVENYSITQSF-NKQENWTKALKYTLCNLKWALFWFVGN 477 (516)
Q Consensus 422 ~~~~~~~-~~~LPY~I~kDkIgg~SIkl~~-n~~e~WTkAlK~lLtNlKwlLawv~~~ 477 (516)
+++.+.. +++|||+|++|||||+|||+++ |++|+||+|||||||||||+|||++..
T Consensus 160 ~~~~~~~~~l~LPY~I~~DkI~g~SIkl~~~~~~e~WTkAlK~~LtnlKwlLa~~S~~ 217 (220)
T 3vp7_A 160 NDVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNL 217 (220)
T ss_dssp ---------CCCSSCEETTEETTEESCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCeEeeCCcCCCEEEEeecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222 3999999999999999999987 579999999999999999999999853
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.72 E-value=1.1e-16 Score=137.71 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a 292 (516)
+.+.+++..|+.+|.+|.++|.+||++++.++++|..++.+..+|+.+|.+||++||.|++++++|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 010177 293 QAHLELLKRT 302 (516)
Q Consensus 293 ~~qLdkLrkt 302 (516)
++||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.32 E-value=1.2e-07 Score=65.87 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.6
Q ss_pred CCCcchhHHHHHHHHHhhcCCcccCCc
Q 010177 142 NSGFHSTITVLKRAFEIATSQTQVEQP 168 (516)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs~s~IDhP 168 (516)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 357999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.50 E-value=0.21 Score=45.81 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQR 201 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~ 201 (516)
+++++..+..+++.+..-+..
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~ 24 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADE 24 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333334344444444333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.39 E-value=0.38 Score=45.84 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
.+...++.++++++.|.+.|...=+.|+. ++.+++..+++....|...+..|..+.+.+.
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~---------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEA---------ELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888887776653 2344444444444444444444444444433
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.11 E-value=0.61 Score=42.71 Aligned_cols=9 Identities=0% Similarity=-0.042 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010177 184 EVDDVTRDI 192 (516)
Q Consensus 184 qle~~~~E~ 192 (516)
++..+..+.
T Consensus 28 ~l~~l~~~~ 36 (284)
T 1c1g_A 28 DKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.01 E-value=0.95 Score=41.85 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
.+.+.+.+.|...|+++|.--+..+.....|+.++.+|++.=...=..|-..+..|-....++.++.+.+.+..+.+.+|
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 44555666666666666666666666666666666666543333334444555666666677777888888888888888
Q ss_pred hh
Q 010177 300 KR 301 (516)
Q Consensus 300 rk 301 (516)
++
T Consensus 153 ~~ 154 (155)
T 2efr_A 153 KK 154 (155)
T ss_dssp HT
T ss_pred hc
Confidence 76
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.80 E-value=0.39 Score=40.90 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010177 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (516)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~ 271 (516)
+.+-..-|+.|+.+ +..+..++.+|+.++..+..+|..++.+..+++.+-.....+...+...--.|-.+..++
T Consensus 6 ~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 6 SEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666543 456788999999999999999999999999998888888777766654444444444444
Q ss_pred HHHHHH
Q 010177 272 QFQLIA 277 (516)
Q Consensus 272 q~qL~~ 277 (516)
..++.-
T Consensus 80 ~~q~~~ 85 (96)
T 3q8t_A 80 ENQMRY 85 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.64 E-value=0.13 Score=54.73 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+++++..+.++.+++..+++.++..++++.+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDL 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhH
Confidence 3333333333333333333333333333333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.37 E-value=0.23 Score=52.85 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 246 El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
++++++.+.+.++.+-+++-++.+..+.++..+++|+..++.+++..+.++..|++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 33333333333333333444444444555555555555565555555555544443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.33 E-value=0.94 Score=44.14 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.7
Q ss_pred eeecCCCceEE
Q 010177 366 IIPMGSYPRIM 376 (516)
Q Consensus 366 LvPmGS~SkI~ 376 (516)
++.|=++.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 66677777774
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.20 E-value=0.14 Score=59.76 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
++.++..|+++.+++++++.++.+|.+++
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.19 E-value=1.4 Score=42.90 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.6
Q ss_pred HHHHHHhh
Q 010177 294 AHLELLKR 301 (516)
Q Consensus 294 ~qLdkLrk 301 (516)
...+++++
T Consensus 179 ~~Yerir~ 186 (256)
T 3na7_A 179 SFYERIRR 186 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566665
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.49 E-value=0.47 Score=42.93 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~ 282 (516)
++..++.++..+-..|.++++++++|...+..++..++.+.+.+.++-+++-++++.++.++..++.++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888888888888888887777777777777777766665443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.27 E-value=0.82 Score=58.94 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
+++|.++|++.++..++|++++.++.++++.=+++=.+|.....+...++++.+....+++.|..-
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555444455555555555555555555555555555433
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.14 E-value=3.8 Score=38.39 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---cCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD---VLS-----EADFLKEKLKIEEEERKLEAAIEETEKQN----------- 240 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---~~s-----ee~l~~e~~~Le~EE~~L~~eL~~LE~e~----------- 240 (516)
.|++|++++..-..+=..--.++++...+ ..+ ..++......|+.....|.+++..|..+.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766665555555555543211 000 01122222334444444444443322211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010177 241 ---AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHLE 297 (516)
Q Consensus 241 ---~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~----~q~~~a~~qLd 297 (516)
.++...+..|+.+.+++..-+.+.-.+...++-.+..++.+..++. -++-.+++.++
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2344455666667777777777777777777777777777777766 44555554443
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.11 E-value=3.1 Score=39.61 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRF----KELEERYWQEFNNFQFQLIAHQEERDAISSK---IEVSQAHLELLK 300 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L----~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q---~~~a~~qLdkLr 300 (516)
.|+++|+.+++....+...+..|..+.... +..-.+.-...|.++.++..+....+.+..+ +++++..|++=.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555444443 3333345566888888888888877777654 445555555443
Q ss_pred h
Q 010177 301 R 301 (516)
Q Consensus 301 k 301 (516)
|
T Consensus 126 R 126 (189)
T 2v71_A 126 R 126 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.65 E-value=4.4 Score=37.44 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 266 ~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLd 297 (516)
+.+..++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666665
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.39 E-value=2.4 Score=54.87 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
.|-...-..-|.++.+++...++.|..=|++|..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777777788888888888763
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.56 E-value=4.5 Score=35.48 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 277 AHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 277 ~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
....+.+.|..++...+.++.+|
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666665554
No 22
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.45 E-value=6.5 Score=33.15 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
......||.+...|+.++..+.... -.....-|..+.+.++.++.....+...+..+++.....++.+++
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555554321 223445688888889999999999998999899888888888874
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=90.44 E-value=6 Score=33.40 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
....++.++..+.++...+...+......+
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433333
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.16 E-value=5.8 Score=33.02 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
+++.+++.+-..+...+...++.+.++......+..+ .|+++.++.+.++.+..|.++-.....+|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e--------------k~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ--------------KNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555544444444444444444333 34444445666666666655555554444
Q ss_pred HHH
Q 010177 297 ELL 299 (516)
Q Consensus 297 dkL 299 (516)
.-|
T Consensus 80 ~el 82 (89)
T 3bas_A 80 ARL 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.01 E-value=5.5 Score=41.39 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 010177 187 DVTRDIEAYEACLQ 200 (516)
Q Consensus 187 ~~~~E~d~Y~~fL~ 200 (516)
..+++.+++...+.
T Consensus 364 ~l~~~~~~le~~~~ 377 (487)
T 3oja_A 364 TLEQKKKALDEQVS 377 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.65 E-value=7.3 Score=31.71 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
++..++..+..++++++.++.++..++..|+.-.+
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777766554
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.39 E-value=5.9 Score=36.52 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~ 254 (516)
.|..|++++..+..++..++.+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.44 E-value=5.4 Score=35.94 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
+-.|--++.++.+.|+.+.++++.|+.+|..++..++.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444443
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.58 E-value=11 Score=39.16 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010177 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (516)
Q Consensus 243 l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~ 276 (516)
.+++.+....+.+.+.++.++.-++..++..++.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3333333333333333333333333333444333
No 30
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.07 E-value=12 Score=31.09 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
++.+++....+......+|+.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555544
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.18 E-value=15 Score=31.24 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
++.+++.+..+..|.+.+..-...++... ........+++.|...|...+..+|.+.+.+...+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444333211 11122223344444444444444444444444333
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.58 E-value=13 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
|+++|..+...+.++..++......|+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444444444444444333333333
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.49 E-value=16 Score=30.90 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEAC 198 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~f 198 (516)
+.+++.+..+..|.+.+..-
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ 24 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDR 24 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.25 E-value=19 Score=31.66 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010177 242 EVNAELKEL 250 (516)
Q Consensus 242 ~l~~El~~l 250 (516)
++...+..+
T Consensus 80 eLe~~l~el 88 (129)
T 2fxo_A 80 QLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=84.73 E-value=6.1 Score=33.35 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
-...|+...+.+..+++.|+++...+..++.+++.++.+
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666677777777777776666666655443
No 36
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.72 E-value=16 Score=30.31 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
+++.++..+-...-.+-.|+++++..+.+|.-|++.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555566777788888888877763
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.50 E-value=20 Score=38.93 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 010177 288 KIEVSQAHLELLKRTNVLN 306 (516)
Q Consensus 288 q~~~a~~qLdkLrktNV~N 306 (516)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4777788888888888877
No 38
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=84.36 E-value=14 Score=39.73 Aligned_cols=95 Identities=20% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (516)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~ 268 (516)
+.+..+|+.-|.|+++...+ -.++.++.+.++..+-+.+.+|.+.+++..++..++- ++++++.++.-..|=+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY---EAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44566788888887754211 1233344444455555555666666665555443322 222222333333455555
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010177 269 NNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 269 N~~q~qL~~~~ee~~sl~~q 288 (516)
-+++.+|...++++..+...
T Consensus 83 AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666544433
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.16 E-value=21 Score=31.17 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
..-|..|..+++.+..|+.....-+..+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666555555443
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.76 E-value=3.4 Score=33.73 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+++..+.+-.+|....+..|+++|++..+.+++|..|+.++..+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555566677788888888888888777765544
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.54 E-value=15 Score=30.84 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
....+.+...+..++..|+.+...++.++..++.+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554443
No 42
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.79 E-value=20 Score=30.87 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=38.5
Q ss_pred HHHHHH-HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 194 AYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 194 ~Y~~fL-~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
+|.++- ++|. .+|..++..|-..||.....++.+-..|..........+++|+.|..+|..+.
T Consensus 18 ~YE~~h~ErL~-----~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 18 TYERYHTESLQ-----NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 566643 4444 35667777777777766666666655555555555666666666666665433
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.29 E-value=13 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+++.|-..|...+..||.+.+.+...+...
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 44
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.90 E-value=35 Score=35.69 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCC-CCChH
Q 010177 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKI-PVEWD 336 (516)
Q Consensus 289 ~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~-~V~W~ 336 (516)
|+..+.||+.+..+|.+... .+ -++..|..+-+++. |=+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 55556678888888877642 11 23666677766653 33455
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.76 E-value=13 Score=38.44 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 231 AAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
+.++++|.|..+++++|++++.+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.66 E-value=20 Score=33.05 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~ 287 (516)
..+..|+.|...+..+|.+++.+..+..+.+..+..|...|.- ++|.++-.+..+++|.+.|..
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql-------q~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI-------ENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555555544444444444432 344455555555555554443
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.11 E-value=22 Score=31.13 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
|+.++...-..|..+|+.+...++.++..|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444445555555555555555555444443
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.82 E-value=15 Score=39.81 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHH
Q 010177 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQA 345 (516)
Q Consensus 266 ~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~ 345 (516)
.....||..|.+...+.+-|+.-|+ .+++.-|---.-+-+|.|.++. +.+ |=
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId---iqirsCKgsCsr~~~~~vd~~s-------------------Y~~------~Q 182 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID---IKIRSCRGSCSRALAREVDLKD-------------------YED------QQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGTBSCCCCCCCCHHH-------------------HHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccchheeecchHH-------------------HHH------HH
Confidence 4445555555544444444443333 3455555555555555554432 222 44
Q ss_pred HHHHHHHHhhcCC
Q 010177 346 CLLLHTMCQYFRP 358 (516)
Q Consensus 346 ~LLL~tla~~l~~ 358 (516)
=.|.+.+|.-|-.
T Consensus 183 KQLeQv~a~dL~p 195 (562)
T 3ghg_A 183 KQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHhhcccCC
Confidence 5677888877754
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.71 E-value=35 Score=31.43 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 270 NFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
.++.....++.+.......++..+.||..|+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455566777777777765
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.45 E-value=20 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+...-..|..+|+.+...++.++..|.++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 51
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=79.33 E-value=15 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
.|+.+..+.|-.|..-|..||..+..-+.+++..+.++|.|+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666676777777777777777777777666666665543
No 52
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.01 E-value=33 Score=30.05 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
...|+.....+.-|++.|..-++....+... .-..+++++..|..+...+...|.+||.....++..-+.... -|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~---SL 79 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIV---SL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHh---hH
Confidence 3457888888999999999887776654321 124578888899999999999999999999888875555443 45
Q ss_pred HHHHHHHHHHH
Q 010177 258 KELEERYWQEF 268 (516)
Q Consensus 258 ~~eE~~~W~e~ 268 (516)
++.|.+|=+.+
T Consensus 80 eD~E~k~n~ai 90 (111)
T 2v66_B 80 EDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55565555443
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=78.89 E-value=9.1 Score=31.80 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
-...|+...+.+..+|+.|+++...+..++.+++..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666777777777777777666666544
No 54
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=77.92 E-value=37 Score=30.04 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 010177 187 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 256 (516)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~se-e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El---------~~le~e~~~ 256 (516)
.++.|.+.|..++.-|+.+.. .+.. -++ ..+..+-+++..+..+|..++.++.++-+++ .++-.
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~-~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~---- 85 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETE-ALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA---- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH----
Confidence 345567778888887776542 1222 232 3667778888888888888888888775532 11111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 010177 257 FKELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKR 301 (516)
Q Consensus 257 L~~eE~~~W~e~N~~q~qL~~~~ee~~sl-~~q~~~a~~qLdkLrk 301 (516)
....=...|.....+-.+..+.-+....+ ..++.+.+.-|+-|+.
T Consensus 86 ~~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 86 AHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111357888877766666554444433 4567778877888873
No 55
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.76 E-value=35 Score=35.12 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L-~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
|.++|.++++...+++++-...-...-.| +.+|+ +...-+....+++.|...++.+++.+..++++||+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDA----EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445555555555444433332222222 23333 23333356777788888889999999999999875
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.58 E-value=7.7 Score=30.36 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
+-..+...|..++++|+++..+|..++..|+.|...|..
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888888888877666654
No 57
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=77.22 E-value=22 Score=35.00 Aligned_cols=74 Identities=11% Similarity=0.257 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
..|..+.+.+..+|+-|+=.+.-...||.++..++++|+..-+.....+-.++.+-..+++++.-+..+++..+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34666666777778888777777888888888888888777776677777777666666666666666655543
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.74 E-value=40 Score=29.33 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 010177 195 YEACLQRLE 203 (516)
Q Consensus 195 Y~~fL~~L~ 203 (516)
|...+..|+
T Consensus 18 ye~~I~~LR 26 (119)
T 3ol1_A 18 YEEEMRELR 26 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 59
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=75.29 E-value=34 Score=32.10 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDA 284 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~----------~W~e~N~~q~qL~~~~ee~~s 284 (516)
+.+....|..+..++..+++.||++...++.++..++.+...+++.+.. .--.-..+..|++++..+-.+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~A 126 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYA 126 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHH
Confidence 3444455777777788888888888888888888887755544433311 000112344667777666666
Q ss_pred HHHHHHHHH
Q 010177 285 ISSKIEVSQ 293 (516)
Q Consensus 285 l~~q~~~a~ 293 (516)
++.-+-+..
T Consensus 127 ieDaIy~L~ 135 (174)
T 2p22_A 127 LTDTIECLS 135 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665544443
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.03 E-value=23 Score=29.25 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.+|.+-..|+..+..++.+.++-..+...++.|.+.+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333
No 61
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.95 E-value=39 Score=35.52 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
+.+-++++.+..+...|...++..
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555556666666666555
No 62
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.86 E-value=27 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
-..+|..-|..|++|.++++..+..++.+.++|+
T Consensus 40 G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 40 GHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555544443
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.75 E-value=38 Score=28.65 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~e 280 (516)
+..++..++....+++.++.+|..+...++.+=+.+-..+...+..|.+...
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666655554444444444444444444333
No 64
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.55 E-value=33 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.++.+|.+-..|+..+..++...++-..+...++.|.+.+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554444444444444444
No 65
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=74.55 E-value=42 Score=29.03 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------cccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA-----------RDVLSEAD---FLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~-----------~~~~see~---l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
.+....++..+..+++.+..-|..|.... ...++... +..=+..|+........++..++.+.+..
T Consensus 21 ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~ 100 (150)
T 3ajw_A 21 VDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLA 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443211 11223232 23334567777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010177 244 NAELKELELKSKRFKELEERYWQEFNNFQF 273 (516)
Q Consensus 244 ~~El~~le~e~~~L~~eE~~~W~e~N~~q~ 273 (516)
..++.+...+.+.++.+.++...++.....
T Consensus 101 r~~l~~a~~~~k~~e~L~er~~~~~~~~~~ 130 (150)
T 3ajw_A 101 LKSWREKKQRLQAWQTLQDRQTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777766654443
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.38 E-value=26 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
|+.+-+.+.+.|+++|.+...++..+..++..+..=
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455556666777777777777777777777654443
No 67
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.35 E-value=12 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.+|+.++...-..+..+|.+.|+...+|..|++.++.+..+|
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556677777777777777777776665554
No 68
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.50 E-value=1.6 Score=47.70 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 010177 178 SDKLDKEVD 186 (516)
Q Consensus 178 le~Ld~qle 186 (516)
+++|+.|-.
T Consensus 302 ~qqm~~~a~ 310 (575)
T 2i1j_A 302 VQQMKAQAR 310 (575)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345554443
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.44 E-value=49 Score=28.93 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
..+++.|..-..++.++.+++..+++..+...-++.+.---..+|+.+ ...|.-+....+..+.+|..|++-|
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE----RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE----RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444555555555554443333333333222222233333 2344456667778888888887754
No 70
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.38 E-value=54 Score=29.39 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-..|..++.++..+.+.+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776555544322 13344455556666666666666666555444
No 71
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=72.21 E-value=46 Score=36.00 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.++.+|.+.+++.+||...++-..++
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~ 340 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARN 340 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666554443333
No 72
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.20 E-value=12 Score=37.85 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
.++++.|+.+.+++.+|+++|+.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665443
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.74 E-value=54 Score=29.05 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~ 254 (516)
.+++|+.|...|+++|.++.++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.69 E-value=44 Score=28.07 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ 279 (516)
+..++..++....+++.++..|+.+...++.+=+.+-..+...+..|....
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666655555554443344444444444444333
No 75
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=70.21 E-value=24 Score=31.31 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 280 EERDAISSKIEVSQAHLE 297 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLd 297 (516)
++-..|..+|.-....||
T Consensus 71 ~eY~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 71 SQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555544
No 76
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=69.69 E-value=20 Score=31.44 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 010177 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 257 (516)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El---------~~le~e~~~L 257 (516)
.+.++.+.|..++.-|+.+.. .+..-+ ...+..+-+++..+..+|..++.++.++.+.+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~-~L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQ-ALERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 345677778888887776532 111111 12667788888899999999999988775543 111000 011
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 010177 258 KELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 258 ~~eE~~~W~e~N~~q~qL~~~~ee~~sl-~~q~~~a~~qLdkLrktN 303 (516)
..+=...|.....+-.++.+.-+....+ ..++++.+.-|+.|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1222357888777766666554444433 356778888888887643
No 77
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.61 E-value=3.7 Score=44.76 Aligned_cols=18 Identities=11% Similarity=0.379 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010177 187 DVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~ 204 (516)
++++++..|..-|..++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~ 349 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQE 349 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 456666666666665553
No 78
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.43 E-value=22 Score=29.82 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
++-...+..+..+.++|++|.+.|.+++..|+.|...|..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666778888888988888888888887766643
No 79
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=68.40 E-value=20 Score=35.07 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 273 FQLIAHQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
.++...+.++.++++++..++.+|+.++
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666665543
No 80
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=67.99 E-value=26 Score=34.57 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666666553
No 81
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.96 E-value=28 Score=37.37 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
..++.+|.++.+++..++++|+.++.++.++|.++...
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667788888889999999999999999998876543
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.74 E-value=15 Score=38.33 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=6.1
Q ss_pred CChHHHHHHHHH
Q 010177 333 VEWDEINAAWGQ 344 (516)
Q Consensus 333 V~W~EINAAwGQ 344 (516)
..=.||=...++
T Consensus 120 ~~Q~~Vf~~v~~ 131 (403)
T 4etp_A 120 DTNVDVFKEVGQ 131 (403)
T ss_dssp CCHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 444555555554
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.48 E-value=63 Score=28.21 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
....+..|++++..+..+++.|..++..|+... +.||..++....-|+++|......-....=|+.|
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N-------------DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~E 99 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN-------------DDLERAKRATIVSLEDFEQRLNQAIERNAFLESE 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777665321 2234444444444555555444433333334444
Q ss_pred HH
Q 010177 254 SK 255 (516)
Q Consensus 254 ~~ 255 (516)
+.
T Consensus 100 l~ 101 (111)
T 2v66_B 100 LD 101 (111)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 84
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.29 E-value=65 Score=28.22 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEV 243 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l 243 (516)
++...|..|+.+.+.+
T Consensus 42 elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQ 57 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 85
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.41 E-value=67 Score=28.09 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010177 279 QEERDAISSK 288 (516)
Q Consensus 279 ~ee~~sl~~q 288 (516)
.+....+.+.
T Consensus 96 ee~~~~L~~~ 105 (129)
T 2fxo_A 96 EEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 86
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=66.32 E-value=17 Score=30.48 Aligned_cols=10 Identities=10% Similarity=0.415 Sum_probs=6.4
Q ss_pred HHHHHHhHHH
Q 010177 263 RYWQEFNNFQ 272 (516)
Q Consensus 263 ~~W~e~N~~q 272 (516)
+..++||+++
T Consensus 45 ~~Lh~YNeiK 54 (85)
T 3viq_B 45 DLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 4566777765
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.82 E-value=25 Score=37.13 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
++..++..|.++.+++..++++|+.++.++.++|..+..+.++. ++...+...+..++.+++++...++.++....
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888889999999999999999998888764332111 12333344444444444444444444433222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 010177 294 AHLELLKRTNVLNDAFPIWH 313 (516)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~h 313 (516)
|+==|+..+.=+++.
T Consensus 104 -----~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 104 -----WRLPNITHPSVPVGK 118 (455)
T ss_dssp -----TTSCCCCCTTSCCCS
T ss_pred -----HhCCCCCCccCCCCC
Confidence 333466666555554
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.01 E-value=24 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.....|+.+.+.|+.+..+|..++..|+.|...|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666655554
No 89
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=63.19 E-value=64 Score=33.32 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl 285 (516)
|+..|..--+.|...|+++.....+|+++|+...+...+++ ++.|.++-++..+...+|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHHH
Confidence 34455555556666667766666666665555444333222 46777777777666666543
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.18 E-value=76 Score=27.62 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl 285 (516)
+.|..++...|..|+.+.+.+......|+.. +.+.|.+|=.+...++..+..++.++..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~---l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNA---IADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444444444444444444444444444432 22333334344444444444444444333
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.03 E-value=18 Score=37.82 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
.|+.|..++.+++++++++.+++.+++++++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 92
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=63.03 E-value=76 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
.++|.+...+.+++.+++.+++.....++.+-.-|+.-+.+.+.=
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiL 54 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666665555565555544443
No 93
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.60 E-value=29 Score=28.28 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 010177 293 QAHLELLK 300 (516)
Q Consensus 293 ~~qLdkLr 300 (516)
+.+||+++
T Consensus 60 qseLDKfr 67 (72)
T 3nmd_A 60 QNELDKYR 67 (72)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 33444443
No 94
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=62.48 E-value=55 Score=31.34 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 010177 170 CLECMRVL 177 (516)
Q Consensus 170 C~eC~d~L 177 (516)
|.+|++.+
T Consensus 130 ~~~~~~~~ 137 (213)
T 1ik9_A 130 ALDTIAEN 137 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 95
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=62.48 E-value=48 Score=35.53 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
..++.+|.++.+++..++++|..++.++.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778888888889999999999999888877654
No 96
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=61.85 E-value=11 Score=25.51 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
-+.||+.++.++..+..|+.+++.|+
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776655553
No 97
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.23 E-value=1.9e+02 Score=31.56 Aligned_cols=16 Identities=6% Similarity=0.192 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 010177 287 SKIEVSQAHLELLKRT 302 (516)
Q Consensus 287 ~q~~~a~~qLdkLrkt 302 (516)
++....+++++.|++.
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555666777777776
No 98
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.02 E-value=64 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQ 239 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e 239 (516)
+|++.|+.+...|++++.+|+.+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 99
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=60.81 E-value=32 Score=36.91 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
..++..|.++.+++..++++|..++.++.++|..+....++. +....+...+.. +...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~----~~l~~~~~~l~~-------~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA----KDLIAEKEKLSN-------EKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 456677888888888899999998888888887765422111 112223333444 444444444444444
Q ss_pred HHH--HhhcccCCCceeeeec
Q 010177 296 LEL--LKRTNVLNDAFPIWHD 314 (516)
Q Consensus 296 Ldk--LrktNV~Nd~F~I~hd 314 (516)
|+. |+==|+..+.=+|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 432 2224777777777644
No 100
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.79 E-value=76 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010177 278 HQEERDAISSKIEVSQAHLELLK 300 (516)
Q Consensus 278 ~~ee~~sl~~q~~~a~~qLdkLr 300 (516)
...+...|..++.+.+.++.+|.
T Consensus 66 l~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHTTSHHHHHHHHHHHTTC---
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655554
No 101
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.18 E-value=21 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444
No 102
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=59.94 E-value=77 Score=32.11 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=44.4
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHhccccccC-CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 010177 170 CLECMRVL---SDKLDKEVDDVTRD---IEAYEACLQRLEGEARDVL-SEADFLKEKLK-IEEEERKLEAAIEETEKQNA 241 (516)
Q Consensus 170 C~eC~d~L---le~Ld~qle~~~~E---~d~Y~~fL~~L~~~~~~~~-see~l~~e~~~-Le~EE~~L~~eL~~LE~e~~ 241 (516)
|.|+-..| .++|+.++..+++- ..+|...|.+|..+....+ +..++....+. |+.| .++..+-.++...++
T Consensus 15 ~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~~k~ 93 (302)
T 3ibp_A 15 AREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVGARKN 93 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444333 56666666666553 4456778888876643223 34466555544 4444 555555555555555
Q ss_pred HHHHHHHHH
Q 010177 242 EVNAELKEL 250 (516)
Q Consensus 242 ~l~~El~~l 250 (516)
+|+.+|+.|
T Consensus 94 ~Le~~ierL 102 (302)
T 3ibp_A 94 AVDEEIERL 102 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 103
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.73 E-value=94 Score=27.52 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 010177 179 DKLDKEVDDV 188 (516)
Q Consensus 179 e~Ld~qle~~ 188 (516)
.-|+.+|.++
T Consensus 28 ~lLq~qLTqA 37 (121)
T 3mq7_A 28 HLLQQELTEA 37 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 104
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=58.76 E-value=52 Score=29.08 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 283 DAISSKIEVSQAHLE 297 (516)
Q Consensus 283 ~sl~~q~~~a~~qLd 297 (516)
..+-.+|.-...+|+
T Consensus 74 ~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 74 QELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 105
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.67 E-value=32 Score=28.16 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
++-...+..+..+..+|++|...|..++..|+.|...|.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666778888899999999998888888877664
No 106
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.60 E-value=28 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
....|..+.+.|+.+...|..++..|+.+...|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666665555443
No 107
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=57.56 E-value=66 Score=28.72 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK-EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.|...+..++++...+..-++.+..........+-+.. -...|+..+.+| ..|.+|.....+++.++..|+.++..++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888766655433211000010100 011222222222 1235677777777777777777766654
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 259 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 259 ~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkL 299 (516)
... .... .-+..++..+..-.+.++-++..|+.+
T Consensus 89 ~~~-----~~~~--~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 89 ENN-----NVED--YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp C---------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 0111 112333444545555556666666654
No 108
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.52 E-value=1.1e+02 Score=27.45 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555554444444433333
No 109
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.21 E-value=86 Score=26.97 Aligned_cols=82 Identities=12% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc-------------cCC---------------HHHHHHHHHHHH
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----RD-------------VLS---------------EADFLKEKLKIE 223 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~----~~-------------~~s---------------ee~l~~e~~~Le 223 (516)
..++.+..++..+...+..|...++.|+.-. .+ .+. +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 3455666666667777777877776665311 00 000 111333444466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
...+.+...++.++++.+.+.+++..++.++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777777766655444
No 110
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.98 E-value=35 Score=35.51 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~ 252 (516)
+|+.|+++.+++++++++++.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 111
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.83 E-value=45 Score=28.67 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
=+..+.++++.++.|++...+..+.|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777776665
No 112
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=56.43 E-value=1.6e+02 Score=31.82 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 010177 176 VLSDKLDKEVDDVTRDIE----AYEACLQRLE 203 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d----~Y~~fL~~L~ 203 (516)
.-|..++++++.+++.-. +|+.-|...+
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~ 40 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANN 40 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777766443 3666665544
No 113
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.27 E-value=58 Score=29.43 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHh
Q 010177 288 KIEVSQAHLELLK 300 (516)
Q Consensus 288 q~~~a~~qLdkLr 300 (516)
.++..+.||..|+
T Consensus 118 ll~~lq~QL~~LK 130 (135)
T 2e7s_A 118 LLDTLTLQLKNLK 130 (135)
T ss_dssp CC-----------
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555554
No 114
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=55.90 E-value=75 Score=27.63 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 280 EERDAISSKIEVSQAHL 296 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qL 296 (516)
.+..++++++...+.+|
T Consensus 82 ~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 82 AAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444544444444
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=55.29 E-value=26 Score=29.64 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010177 279 QEERDAISSKI 289 (516)
Q Consensus 279 ~ee~~sl~~q~ 289 (516)
..|++.+..+|
T Consensus 75 ~~e~d~~k~k~ 85 (90)
T 2wt7_B 75 ARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.74 E-value=21 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
++|..|-.+|.+++++|.++.+++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665544
No 117
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.65 E-value=96 Score=25.77 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
.|-+|.+.|.-.+.++|.|+.+.+..|++-++|+..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46667777778888888888888777777765555443
No 118
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.55 E-value=27 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 237 EKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 237 E~e~~~l~~El~~le~e~~~L 257 (516)
.+|.+.+.+||..|+-|...|
T Consensus 8 kqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 119
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.95 E-value=1.2e+02 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEA 194 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (516)
|.+|+.|+.+++.+..+.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666555444
No 120
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.56 E-value=1.3e+02 Score=27.10 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 260 (516)
...+++.+.+..+.=.+-.+.|+..... + ...+..|+.+.+....-.++.+..+.++...|.-++.++.+-++.
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~--d----eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR 95 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQK--D----EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--c----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555432110 0 112233444444444444455555555555555444443333222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010177 261 EERYWQEFNNFQFQLIAHQEERDAISS 287 (516)
Q Consensus 261 E~~~W~e~N~~q~qL~~~~ee~~sl~~ 287 (516)
-+..=..+-.+.-+|....+.+.++..
T Consensus 96 ae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 96 AELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 222222333333444444444444443
No 121
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=51.70 E-value=2.3e+02 Score=29.60 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010177 263 RYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (516)
Q Consensus 263 ~~W~e~N~~q~qL~~~~ee~~sl~~q~~~ 291 (516)
.|-..+..+......+..+...+..+++.
T Consensus 207 ~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~ 235 (486)
T 3haj_A 207 KYEKSLKELDQGTPQYMENMEQVFEQCQQ 235 (486)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333444433333333333333333333
No 122
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=51.34 E-value=1.6e+02 Score=31.10 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=14.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDV---TRDIEAYEACLQRL 202 (516)
Q Consensus 178 le~Ld~qle~~---~~E~d~Y~~fL~~L 202 (516)
|+.|+..++++ ..+...|...|+..
T Consensus 40 l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 40 LQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 45555555544 45666677776654
No 123
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.15 E-value=1.3e+02 Score=26.69 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=32.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
.|-|.+.... +..|-..+-...++++....- |=+. ..++++-.+.+.+|++|-+...+++++.-++.+++-
T Consensus 49 ~~~~~~f~~~-~~ela~dli~k~kqIe~LIds---LP~~---~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 49 VVPPEEFSNT-IDELSTDIILKTRQINKLIDS---LPGV---DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---STTT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHh---CCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445433332 223444444444555544333 3221 124555455555566555555555554444444433
No 124
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=50.91 E-value=1.4e+02 Score=26.82 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (516)
.+.|+++-++...|+..|..
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776655
No 125
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=50.70 E-value=99 Score=25.06 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~q 274 (516)
...+..+.+|++++.+.+++++.+...+.++|.+.-.....|..+
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~ 47 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQ 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777665554333333344444
No 126
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.62 E-value=27 Score=30.07 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 256 (516)
+-..|.++|+.|+.|...|.+++..||.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777766544
No 127
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.52 E-value=68 Score=31.24 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 273 FQLIAHQEERDAISSKIEVSQAHL 296 (516)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~a~~qL 296 (516)
.++...+.++..++++++.++.+|
T Consensus 128 a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444433
No 128
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=50.17 E-value=30 Score=29.81 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
...|.+||+.|+.+...|++.|+.++..++.+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777777666666654
No 129
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.11 E-value=39 Score=35.30 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~q 295 (516)
..++.+|.++.+++..++++|+.++.++.++|.+ ... +.-++...+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK-APP-----EEKEALIARGKALGEEAKRLEEALREKEARLEAL--- 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3556677888888888888888888888888765 110 0111223333344444444444444443333222
Q ss_pred HHHHhhcccCCCceeee
Q 010177 296 LELLKRTNVLNDAFPIW 312 (516)
Q Consensus 296 LdkLrktNV~Nd~F~I~ 312 (516)
.|+==|+..+.=+++
T Consensus 98 --~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 98 --LLQVPLPPWPGAPVG 112 (421)
T ss_dssp --HTTCCCCCCTTSCSS
T ss_pred --HHhCCCCCCCCCCCC
Confidence 233456666655555
No 130
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.46 E-value=14 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 236 TEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 236 LE~e~~~l~~El~~le~e~~~L 257 (516)
|.+..+.+.+||..||-|+..|
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4444555555555555554444
No 131
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.00 E-value=1.1e+02 Score=27.73 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 211 see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
++++-.+.+.+|++|-+...+++++.-++.+++
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~l 118 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455545555556555555555554444444333
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=48.92 E-value=48 Score=33.77 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHH
Q 010177 333 VEWDEINAAWGQA 345 (516)
Q Consensus 333 V~W~EINAAwGQ~ 345 (516)
-.|.|-=.++|.+
T Consensus 128 R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 128 RDWVSYREGFGYL 140 (323)
T ss_dssp CCHHHHHHCEEEE
T ss_pred CCHHHHhhhhCCc
Confidence 3677777777765
No 133
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.82 E-value=49 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
..+...|+.+-..|..++..|+.|...|.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 134
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.64 E-value=26 Score=26.98 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.....|+.+++.|+.+..+|..++..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666665544
No 135
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.50 E-value=44 Score=34.93 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
|...|..||.+++++.++++++++.++.+.+.+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665554444
No 136
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=48.30 E-value=71 Score=31.40 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 010177 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 321 (516)
Q Consensus 267 e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTIN 321 (516)
.+...+.++...+.++..++++++.++.+|+ ++.|... .||.+..+|
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~---~~~i~AP-----~~G~V~~~~ 169 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLG---YTKITSP-----IDGTVISTP 169 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSSCCCS-----CCSCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCEEECC-----CCeEEEEee
Confidence 3344445555556666677777777776654 4444332 355554443
No 137
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.22 E-value=1.1e+02 Score=24.83 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.+.+.|+++|.+...++..+..++..+..=
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776654443
No 138
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.79 E-value=2.9e+02 Score=29.54 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
.+-|-++-+.++++.+.-+..|..|+..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 5555566666777777777777777543
No 139
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.44 E-value=1.1e+02 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
=.+.+.+.+..+-.-=-+--..|..||+..+.
T Consensus 439 ~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~ 470 (592)
T 1f5n_A 439 KLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470 (592)
T ss_dssp HHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 37788888887763222233478888876653
No 140
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.00 E-value=91 Score=33.42 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010177 398 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 436 (516)
Q Consensus 398 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 436 (516)
+.+...|-.++.-..++++. +.|||++
T Consensus 310 e~s~~e~e~ml~~~e~il~~------------LgLpyrv 336 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQS------------LGLPYRV 336 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 66777777777666666643 6778876
No 141
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.67 E-value=83 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNA 245 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~ 245 (516)
|+.||+.||+..+.+..
T Consensus 25 leselqalekklaalks 41 (48)
T 1g6u_A 25 LESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 142
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=46.18 E-value=1.9e+02 Score=27.05 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
++..+..+++-++.|....+.+
T Consensus 131 ~~~~~~~l~Kak~~Y~~~c~e~ 152 (276)
T 2v0o_A 131 IQSITQALQKSKENYNAKCVEQ 152 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555544433
No 143
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.16 E-value=79 Score=25.83 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 184 EVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 184 qle~~~~E~d~Y~~fL~~L 202 (516)
+++.+..++.....-+..|
T Consensus 23 Ele~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 144
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.93 E-value=30 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
....++|++|+++.+.|+.|++.||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3455677777777777777776654
No 145
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.61 E-value=1e+02 Score=32.47 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010177 398 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 437 (516)
Q Consensus 398 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 437 (516)
+.+...|-.++.-..+++.. +.|||++.
T Consensus 314 e~s~~~~~e~l~~~~~il~~------------LGL~yrv~ 341 (455)
T 2dq0_A 314 EESWEWHEKIIRNAEELFQE------------LEIPYRVV 341 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHH------------TTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------cCCceEEE
Confidence 57777777777666666653 67788764
No 146
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=44.95 E-value=58 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
.+.+|++--..|...+..||..+.+.++||..|.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888899999999999998888877754
No 147
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.59 E-value=1.3e+02 Score=24.73 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~ 245 (516)
|.|--.|+..+.+...|.++..+--+.|+... ..+..-+.+|+.|+..+...++-+....+++..
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666555544444443211 223444556677777777777776666666543
No 148
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.59 E-value=3.2e+02 Score=29.17 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 010177 178 SDKLDKEVDDV 188 (516)
Q Consensus 178 le~Ld~qle~~ 188 (516)
++.|+..++++
T Consensus 102 LqeLe~~l~~l 112 (464)
T 1m1j_B 102 LRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 149
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.57 E-value=41 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
++..+...|+.|-..|..+|++|++|...+..-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666665554443
No 150
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.08 E-value=1.2e+02 Score=31.60 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010177 398 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 436 (516)
Q Consensus 398 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 436 (516)
+.+...|-.++.-..+++.. +.|||++
T Consensus 289 e~s~~~~~e~~~~~~~il~~------------LGL~~rv 315 (421)
T 1ses_A 289 EASDRAFQELLENAEEILRL------------LELPYRL 315 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceEE
Confidence 67777777777666666653 6788975
No 151
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.82 E-value=1.9e+02 Score=26.39 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcccCCCc
Q 010177 292 SQAHLELLKRTNVLNDA 308 (516)
Q Consensus 292 a~~qLdkLrktNV~Nd~ 308 (516)
....+.+|..-|-+.++
T Consensus 99 LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44445555555544443
No 152
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=43.77 E-value=1.3e+02 Score=24.39 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 262 (516)
.|...+..+.+|++++...+++++.+...+.++|.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~ 37 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888877777764443
No 153
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.32 E-value=1.7e+02 Score=25.60 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010177 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (516)
Q Consensus 255 ~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q 288 (516)
..|.++-..|-+-.++.+.+|..+...|..+..+
T Consensus 59 ~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 59 ILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666776666666555444
No 154
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.83 E-value=2.4e+02 Score=29.57 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhcCCCC
Q 010177 344 QACLLLHTMCQYFRPKF 360 (516)
Q Consensus 344 Q~~LLL~tla~~l~~~f 360 (516)
|-=.|++.++..|-...
T Consensus 184 qqKQL~qv~a~~llP~~ 200 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSR 200 (390)
T ss_pred HHHHHHhhhhhcccccc
Confidence 33448888887664443
No 155
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.11 E-value=1.6e+02 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
+...||.+...+..|+..|..|..++.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.73 E-value=31 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
+..|+.++.++..+++.|..+...|.++|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777777777777777777776666543
No 157
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.20 E-value=1e+02 Score=25.06 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
++...+.+||....-.+.-|++|-....+..++|..|+.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344333333344444444444444444444333
No 158
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.14 E-value=2e+02 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 255 (516)
.+|-.|-..|.++|+..+.|.+.|..++..++.+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445556666666666666666666666666655543
No 159
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.66 E-value=65 Score=24.59 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
.|+.+-..|..++..|+.|...|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 160
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=40.57 E-value=2.3e+02 Score=26.44 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 250 LELKSKRFKELEERY 264 (516)
Q Consensus 250 le~e~~~L~~eE~~~ 264 (516)
|..|+..+.+....|
T Consensus 202 L~~eLp~l~~~~~~~ 216 (251)
T 2fic_A 202 LQEELPSLWNSRVGF 216 (251)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 161
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.51 E-value=74 Score=24.56 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEV 243 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l 243 (516)
..|+.+-..|..+|..|+.+...+
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=40.44 E-value=57 Score=22.24 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le 251 (516)
.|.+|+..|.+|.+.+.=||..|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 163
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=40.02 E-value=83 Score=29.70 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 278 HQEERDAISSKIEVSQAHLE 297 (516)
Q Consensus 278 ~~ee~~sl~~q~~~a~~qLd 297 (516)
.+.++.+.+++++.++.+|+
T Consensus 110 a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555554443
No 164
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=39.83 E-value=1.5e+02 Score=26.72 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 010177 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 314 (516)
Q Consensus 271 ~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktN-V~Nd~F~I~hd 314 (516)
++.+...+...+.....++..|....+||+|-+ -+=-+|++-|.
T Consensus 43 ~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 43 CENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 344444555666777888999999999999873 23334554444
No 165
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.70 E-value=39 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 219 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
+..|+.++..+..+++.|..+...|.++|..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777778888888888888877777776653
No 166
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.60 E-value=31 Score=27.83 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 249 (516)
..|+.+...|..++++|..+...|.++|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666555544
No 167
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=39.55 E-value=2.5e+02 Score=26.45 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEA 197 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (516)
.+.|+++-++...|+..|.+
T Consensus 28 ~e~L~~E~e~k~eEKkkiLa 47 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRALS 47 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654
No 168
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.15 E-value=1.9e+02 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEV 243 (516)
Q Consensus 232 eL~~LE~e~~~l 243 (516)
|++.|..+..++
T Consensus 19 e~~~l~~~~~el 30 (125)
T 1joc_A 19 EIEKLQTKVLEL 30 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 169
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.81 E-value=28 Score=36.38 Aligned_cols=92 Identities=14% Similarity=0.274 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
++..++..|.++.+++..++++|+.++.++.++|.++..+.++. ++...+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567778888889999999999999999988887653321110 1122333334444444444444444443322
Q ss_pred HHHHHHhhcccCCCceeeeec
Q 010177 294 AHLELLKRTNVLNDAFPIWHD 314 (516)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~hd 314 (516)
.|+=-|+.++.=+++.|
T Consensus 102 ----~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVGED 118 (425)
T ss_dssp ----HHTSCCCCCTTSCCCSS
T ss_pred ----HHhCCCCCCCCCCCCCC
Confidence 23445777766666543
No 170
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.69 E-value=59 Score=24.70 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEK 238 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~ 238 (516)
.|...|+.+-..|.++++++.+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 171
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.53 E-value=3.8e+02 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
..++..++....++..+++..+.++..|..
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666654
No 172
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.47 E-value=1.2e+02 Score=22.19 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e 253 (516)
|..||.|...++..+..++.+
T Consensus 22 laaleselqalekklaalksk 42 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 173
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=37.35 E-value=1.7e+02 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQN 240 (516)
Q Consensus 210 ~see~l~~e~~~Le~EE~~L~~eL~~LE~e~ 240 (516)
++-++|++|+...|.+.-...+.|++.++..
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~ 52 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQY 52 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666665555555555555554444433
No 174
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.07 E-value=2.1e+02 Score=25.02 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEET 236 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~L 236 (516)
.|..|-..|..+|+.+
T Consensus 19 ~Lkreie~lk~ele~l 34 (120)
T 3i00_A 19 RLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 175
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=37.04 E-value=1.3e+02 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
.+.+|++--..|...+.+||..+.++++|+..|.+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45567777777888888888888888887776654
No 176
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=36.54 E-value=1.7e+02 Score=23.75 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNA 245 (516)
Q Consensus 233 L~~LE~e~~~l~~ 245 (516)
|..+|++...|+.
T Consensus 44 lA~lEqdE~~LE~ 56 (72)
T 2xu6_A 44 IANIEQNQLMLED 56 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 3333333333333
No 177
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.49 E-value=1e+02 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 226 E~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
...-.++|+.+|++.......|+.|
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444443
No 178
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.75 E-value=2.2e+02 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQ 200 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (516)
.+|+.+++.+..+++.-..|++
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 179
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=35.51 E-value=1.1e+02 Score=31.65 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--ADFLKEKLKIEEEERKLEAAIEET 236 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~se--e~l~~e~~~Le~EE~~L~~eL~~L 236 (516)
++.+++++++||+....-|+..+.......++ .+.....+.|.+++..|.+||..+
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l 71 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL 71 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998887422100011 122223344566666666666443
No 180
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.50 E-value=42 Score=33.22 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=3.1
Q ss_pred ccCCCCC
Q 010177 323 FRLGRLP 329 (516)
Q Consensus 323 lRLGrlp 329 (516)
+|+.-.|
T Consensus 122 ~~V~Vsp 128 (251)
T 3m9b_A 122 MRLTCSP 128 (251)
T ss_dssp CEECBCT
T ss_pred EEEEeCC
Confidence 4444444
No 181
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.43 E-value=2.1e+02 Score=24.43 Aligned_cols=6 Identities=0% Similarity=-0.429 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010177 288 KIEVSQ 293 (516)
Q Consensus 288 q~~~a~ 293 (516)
+.+...
T Consensus 84 kn~~L~ 89 (97)
T 2eqb_B 84 LNKRLT 89 (97)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 182
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.34 E-value=1.3e+02 Score=29.89 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 269 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~-e~N 269 (516)
.++++.-.++..++.+++++..++++++.+++....-++.+ ..|. .++
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 34555566666777777777777777777777663223333 2455 443
No 183
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=34.97 E-value=4.1e+02 Score=27.67 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=7.1
Q ss_pred eccccCCCCCCCCCChHHHHH
Q 010177 320 INNFRLGRLPKIPVEWDEINA 340 (516)
Q Consensus 320 INGlRLGrlp~~~V~W~EINA 340 (516)
|+..+-|--| .+++..|-+.
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~ 306 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSA 306 (486)
T ss_dssp HHHHSTTSCC-CCCCC-----
T ss_pred HHHhCCCCCC-CCCCceeCCc
Confidence 4555555433 3454444444
No 184
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.57 E-value=2.5e+02 Score=26.70 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHhhcccCCC----ceeeeecCCee
Q 010177 295 HLELLKRTNVLND----AFPIWHDGEFG 318 (516)
Q Consensus 295 qLdkLrktNV~Nd----~F~I~hdG~fG 318 (516)
+|-=|+=.|++.+ .|.+..-|.=|
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG 107 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSG 107 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCC
Confidence 4555666677765 44444445444
No 185
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=34.54 E-value=76 Score=30.96 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKIE 223 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~see~l~~e~~~Le 223 (516)
++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++-
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~ 91 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFS 91 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHH
Confidence 45555565566666677777776665433 33455666655544443
No 186
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.49 E-value=2.2e+02 Score=24.33 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 179 DKLDKEVDDVTRDIEAYEACLQRL 202 (516)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L 202 (516)
+.+..++..++.+...+..-+.+|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345555555555555544444443
No 187
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.38 E-value=2e+02 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.|.++|...++...-|..++.|...+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455555544455555554444
No 188
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.27 E-value=68 Score=25.71 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
...+.+||.+..+-+++|.+|+.++.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777665544
No 189
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.01 E-value=2.1e+02 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.|.++|...++.+.-|..++.|...+
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35555555555555555555554444
No 190
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=33.63 E-value=19 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred hHHHHHHHHhHHHHHHHH
Q 010177 457 TKALKYTLCNLKWALFWF 474 (516)
Q Consensus 457 TkAlK~lLtNlKwlLawv 474 (516)
..|+|||||-+.++-+-.
T Consensus 5 ~LALKYLLTPv~~l~a~~ 22 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGY 22 (36)
T ss_pred HHHHHHHhhhHHHHhccc
Confidence 469999999999886543
No 191
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.36 E-value=3.2e+02 Score=25.97 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEER 282 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e~~~L~-~eE~~~W~e~N~~q~qL~~~~ee~ 282 (516)
.+.++.+..++.++++++-....+++ ++=.+|-..+|+-+..+.++++.+
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444433333332 333356777777776666554333
No 192
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=33.26 E-value=1.9e+02 Score=29.34 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHHH
Q 010177 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKIE 223 (516)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~see~l~~e~~~Le 223 (516)
+.=++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++-
T Consensus 24 ~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l~ 74 (384)
T 3tnf_B 24 EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFS 74 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHHH
Confidence 33456667777777777777887776655432 34566677666555553
No 193
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.10 E-value=2.4e+02 Score=24.37 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 225 EERKLEAAIEETEKQNAEVNAELKEL 250 (516)
Q Consensus 225 EE~~L~~eL~~LE~e~~~l~~El~~l 250 (516)
+-.-|.-.|+++|...+++.+|.++.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 194
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.88 E-value=2.4e+02 Score=24.35 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 223 EEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 223 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
-.|...|.=+++-|....++++..+..+..+.
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 195
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.86 E-value=59 Score=34.07 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.2
Q ss_pred CCChHHH
Q 010177 332 PVEWDEI 338 (516)
Q Consensus 332 ~V~W~EI 338 (516)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4889876
No 196
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.83 E-value=3.3e+02 Score=29.15 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010177 398 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 436 (516)
Q Consensus 398 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 436 (516)
+.+...|-.++.-..++++. +.|||++
T Consensus 345 e~s~~~~e~~l~~~~~il~~------------LgLpyrv 371 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTE------------LGLHFRV 371 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 47777777777666666642 6778886
No 197
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.82 E-value=1.9e+02 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.+...-++.-.+.+...++.+++..+.+.+++..++..+.++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666667777777766666666666555444
No 198
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.79 E-value=2.1e+02 Score=23.59 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010177 281 ERDAISSKIEVSQAHLE 297 (516)
Q Consensus 281 e~~sl~~q~~~a~~qLd 297 (516)
+...+.+++...+.+|.
T Consensus 53 ~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 53 AVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445444444443
No 199
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.36 E-value=2e+02 Score=23.37 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 280 EERDAISSKIEVSQAHLELL 299 (516)
Q Consensus 280 ee~~sl~~q~~~a~~qLdkL 299 (516)
.+...+..++.+....+..|
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 200
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=32.24 E-value=3.4e+02 Score=25.93 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
.+.+.+....|..+.+.|..++..|+++...+..+|+..-
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaa 48 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667888888888888888888888888777764
No 201
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.13 E-value=79 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 234 EETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 234 ~~LE~e~~~l~~El~~le~e~~~L 257 (516)
+.|.++.++-+.||..|+.+-.+|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444455555554443333
No 202
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.97 E-value=1.8e+02 Score=31.08 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010177 400 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 437 (516)
Q Consensus 400 AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 437 (516)
+...|-.++.-..+++.. +.|||++-
T Consensus 335 s~~e~e~~~~~~e~il~~------------LGLpyrvv 360 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKS------------LGLPYRVV 360 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 666666665555555542 67788773
No 203
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=31.67 E-value=3e+02 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
+.+.+....|....+.|..++..|+++...+..+|+..-
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777777777777777777777777776653
No 204
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.10 E-value=31 Score=27.98 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
+++...+..+...-.-+..=|.+-|...+.|..+++-|+.|+.+++..+
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344344444444444555566777777777778888888877776543
No 205
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.35 E-value=1.1e+02 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 213 ADFLKEKLKIEEEERKLEAAIEETEK 238 (516)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~LE~ 238 (516)
+++...++++-.|..+-+++|.++++
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333
No 206
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.33 E-value=79 Score=21.56 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAE 246 (516)
Q Consensus 232 eL~~LE~e~~~l~~E 246 (516)
|..+.|.|.-++++|
T Consensus 9 evaqaeaenyqleqe 23 (33)
T 1fmh_A 9 EVAQAEAENYQLEQE 23 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 333333333333333
No 207
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.07 E-value=46 Score=32.93 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 010177 279 QEERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~ 310 (516)
.+++..+..++...+.++++|+..-.+=.+|-
T Consensus 74 ~~~Lk~ar~El~~LkeElerL~sPPL~iGtvl 105 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRLGQPPSGYGVLL 105 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 34445556667778888999998766655554
No 208
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.01 E-value=4.9e+02 Score=27.05 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 399 KAMTLFLSCLKDFAE 413 (516)
Q Consensus 399 ~AM~afL~cl~q~~e 413 (516)
.+...+++.|.++..
T Consensus 433 ~~~~~i~~~l~~~~~ 447 (517)
T 4ad8_A 433 AAAIAVAEQLSRLAD 447 (517)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 455666777777654
No 209
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=29.60 E-value=1.2e+02 Score=24.38 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (516)
Q Consensus 220 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 259 (516)
.+|..+-..|..+|..+|..-.-.. ++..|+.+...|++
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKD 58 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKD 58 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHH
Confidence 3455555555566655554433233 55555555444443
No 210
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.23 E-value=97 Score=31.52 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=5.5
Q ss_pred ceeeeecC
Q 010177 363 RIKIIPMG 370 (516)
Q Consensus 363 ~YkLvPmG 370 (516)
-|.|.|-|
T Consensus 89 vY~I~p~~ 96 (323)
T 1lwu_C 89 LYYIKPLK 96 (323)
T ss_dssp EEEECCTT
T ss_pred EEEEecCC
Confidence 37777766
No 211
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=29.09 E-value=2.6e+02 Score=25.52 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 218 EKLKIEEEERKLEAAIEETEK 238 (516)
Q Consensus 218 e~~~Le~EE~~L~~eL~~LE~ 238 (516)
....++.+..+|..+...++.
T Consensus 34 ~~~~le~e~~kl~~e~~i~ea 54 (146)
T 2xnx_M 34 TALEKELEEKKKALELAIDQA 54 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444444433
No 212
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=28.73 E-value=31 Score=35.16 Aligned_cols=12 Identities=17% Similarity=0.662 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHH
Q 010177 334 EWDEINAAWGQA 345 (516)
Q Consensus 334 ~W~EINAAwGQ~ 345 (516)
.|.|-=.++|.+
T Consensus 120 ~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 120 NWIQYKEGFGHL 131 (319)
T ss_dssp CHHHHHHCEEEE
T ss_pred CHHHHhHhhCCc
Confidence 466655555554
No 213
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.15 E-value=76 Score=24.72 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 227 RKLEAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 227 ~~L~~eL~~LE~e~~~l~~El~~le~ 252 (516)
..|..+++.|+.+...|..++..|..
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544443
No 214
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.05 E-value=3.5e+02 Score=24.66 Aligned_cols=24 Identities=4% Similarity=0.057 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 010177 279 QEERDAISSKIEVSQAHLELLKRT 302 (516)
Q Consensus 279 ~ee~~sl~~q~~~a~~qLdkLrkt 302 (516)
..++.....+......+++.+.+.
T Consensus 83 ~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 83 AGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444555555555555543
No 215
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.87 E-value=2.7e+02 Score=23.45 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
...-|+.|+++++...++++.-..-.+-...
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445677888888888888777666555543
No 216
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.52 E-value=4e+02 Score=25.16 Aligned_cols=6 Identities=0% Similarity=-0.186 Sum_probs=2.5
Q ss_pred HHHHHh
Q 010177 411 FAEFAN 416 (516)
Q Consensus 411 ~~e~~~ 416 (516)
+..|+.
T Consensus 263 ~~~fi~ 268 (301)
T 2efk_A 263 SHVLIE 268 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 217
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.42 E-value=5.6e+02 Score=26.89 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
|-+-|-++-..+.++.+.-+.-|+.|+.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn 52 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVEN 52 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 3444555555555555555555555543
No 218
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.42 E-value=57 Score=25.06 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQN 240 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~ 240 (516)
|+.+-..|..++..|+.|.
T Consensus 34 L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334443333333
No 219
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.40 E-value=1.4e+02 Score=25.18 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELEL 252 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~ 252 (516)
..++..+......+++++..++.
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 220
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.40 E-value=1.9e+02 Score=21.43 Aligned_cols=9 Identities=44% Similarity=0.852 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010177 222 IEEEERKLE 230 (516)
Q Consensus 222 Le~EE~~L~ 230 (516)
||..|+.|+
T Consensus 22 lerdeqnle 30 (52)
T 3he5_B 22 LERDEQNLE 30 (52)
T ss_dssp HHHHHHHHH
T ss_pred hhhhHhhHH
Confidence 333333333
No 221
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.38 E-value=5.4e+02 Score=26.71 Aligned_cols=18 Identities=0% Similarity=0.067 Sum_probs=10.7
Q ss_pred HHHhhcccCCCceeeeec
Q 010177 297 ELLKRTNVLNDAFPIWHD 314 (516)
Q Consensus 297 dkLrktNV~Nd~F~I~hd 314 (516)
+.|...++-+..|.|...
T Consensus 349 ~~l~~l~~~~~~~~~~~~ 366 (517)
T 4ad8_A 349 AVIRELGMPHARMEFALS 366 (517)
T ss_dssp HHHTTSSCCSCEEEEEEE
T ss_pred HHHHhcCCCCcEEEEEEE
Confidence 445555566667777653
No 222
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=27.24 E-value=3.2e+02 Score=24.03 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.4
Q ss_pred HHHHHhhccc
Q 010177 295 HLELLKRTNV 304 (516)
Q Consensus 295 qLdkLrktNV 304 (516)
.+.+|+--|+
T Consensus 103 ~ik~lr~gn~ 112 (119)
T 3etw_A 103 KIQALRAGNL 112 (119)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHcCCc
Confidence 5666766665
No 223
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=27.05 E-value=3.6e+02 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (516)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~LE~ 238 (516)
+|.++..+|+.+|+++..+|..+-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655433
No 224
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.75 E-value=2.2e+02 Score=21.55 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 229 L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
|..++..|.+..++|.+.+++...++..|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 225
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.53 E-value=4.2e+02 Score=25.35 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 193 EAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (516)
Q Consensus 193 d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 258 (516)
+..+..|.+|..- .+...+--+.+++|+.+-.....+-.+|++..+.+.+|+.+|+...+.|+
T Consensus 9 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 9 EEHEDILNKLLDP---ELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3445556665431 12222223345667777777778888888888888888888887776663
No 226
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.38 E-value=2.8e+02 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.|.--.+.|.+++++|-.|.+.+..|+.+++.-..++
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777776544444
No 227
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.21 E-value=87 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcee
Q 010177 398 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK 435 (516)
Q Consensus 398 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~ 435 (516)
+.+...+..++.-..++++. +.|||+
T Consensus 293 e~s~~~~~e~i~~~~~il~~------------LGL~~r 318 (425)
T 2dq3_A 293 DTSYDELEKLVKDAEEVLQL------------LGLPYR 318 (425)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------HTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceE
Confidence 45776666666666666642 678888
No 228
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.19 E-value=2.9e+02 Score=25.71 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 264 ~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+=+..+.++.....++.++..+...++....+.++++.
T Consensus 54 l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 54 IAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555666666666666665555544
No 229
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.14 E-value=1.9e+02 Score=29.53 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=9.0
Q ss_pred ccCCCceeeeecC
Q 010177 303 NVLNDAFPIWHDG 315 (516)
Q Consensus 303 NV~Nd~F~I~hdG 315 (516)
-++..++.|.+.+
T Consensus 311 ~~lAgal~~~~~~ 323 (426)
T 1lrz_A 311 LPISAGFFFINPF 323 (426)
T ss_dssp EEEEEEEEEECSS
T ss_pred ceeEEEEEEEECC
Confidence 3677777777654
No 230
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.12 E-value=1.2e+02 Score=25.97 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 242 EVNAELKELELKSKRFKE 259 (516)
Q Consensus 242 ~l~~El~~le~e~~~L~~ 259 (516)
.+.+|+..|+.+...|++
T Consensus 10 ~Lk~El~~L~~~E~~LD~ 27 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDH 27 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 231
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.92 E-value=2.9e+02 Score=22.69 Aligned_cols=38 Identities=8% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 265 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W 265 (516)
+|...|++|..|.++|.-+++.+.-+...+.+.-+.+.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544443333
No 232
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.85 E-value=2.6e+02 Score=22.06 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 261 (516)
++.-...-++.+.+|-+-...+.+||+-++.++..|..+.
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 3444444456667777777777777777777776665543
No 233
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.78 E-value=1.4e+02 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (516)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 244 (516)
+......|+.|-..|..++..|++|...|.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666665555555443
No 234
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.74 E-value=4.9e+02 Score=25.34 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~------~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
+-...+.--.-.+.|+..|+.+..... +-.......++|..+..+|. ..|..||+|....+++..-.|.++
T Consensus 78 ~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 78 LGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333334455668888888764211 01112222233333333333 345666666666655554445444
Q ss_pred HHHH
Q 010177 255 KRFK 258 (516)
Q Consensus 255 ~~L~ 258 (516)
..+.
T Consensus 155 ~n~k 158 (234)
T 3plt_A 155 SNIT 158 (234)
T ss_dssp HHHH
T ss_pred HHhH
Confidence 4443
No 235
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.54 E-value=2.8e+02 Score=24.28 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010177 239 QNAEVNAELKEL 250 (516)
Q Consensus 239 e~~~l~~El~~l 250 (516)
..+++++++.+|
T Consensus 89 ~~~~l~~~i~~L 100 (142)
T 3gp4_A 89 QRIELKNRIDVM 100 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 236
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.50 E-value=4.1e+02 Score=28.38 Aligned_cols=36 Identities=11% Similarity=0.285 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010177 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (516)
Q Consensus 169 LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (516)
+|--=|. |-+-|-++-..+.++.+.-+.-|+.|+..
T Consensus 75 yCPTtCg-lad~L~kye~~V~~dl~~Le~~l~~isn~ 110 (461)
T 3ghg_B 75 LCPTGCQ-LQEALLQQERPIRNSVDELNNNVEAVSQT 110 (461)
T ss_dssp CEECHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcch-HHHHHHhcccchhhHHHHHHHHHHHHHhh
Confidence 3543332 45556666666777777777777777644
No 237
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.39 E-value=85 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (516)
+..|+..++.+++|||-|-.-|+.++
T Consensus 10 i~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 10 LVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 238
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.06 E-value=73 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e~ 254 (516)
+|..++..|+.+.+++++++..++.+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555554443
No 239
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.89 E-value=7e+02 Score=26.79 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 010177 289 IEVSQAHLELLKRTNVLND 307 (516)
Q Consensus 289 ~~~a~~qLdkLrktNV~Nd 307 (516)
|+..|.||+.+..+|+++.
T Consensus 179 Ye~~QKqLeQv~a~dL~p~ 197 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMHPD 197 (491)
T ss_dssp THHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhhccccCCc
Confidence 5667889999999999874
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.67 E-value=2.2e+02 Score=31.75 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=5.8
Q ss_pred ccCCcchHHHHHHH
Q 010177 164 QVEQPLCLECMRVL 177 (516)
Q Consensus 164 ~IDhPLC~eC~d~L 177 (516)
.|+.|-=.+....|
T Consensus 328 ~l~~p~~~e~~~iL 341 (854)
T 1qvr_A 328 YVDEPTVEETISIL 341 (854)
T ss_dssp EECCCCHHHHHHHH
T ss_pred EeCCCCHHHHHHHH
Confidence 34445433333333
No 241
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=23.57 E-value=5.1e+02 Score=25.09 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQN-AEVNAELK-ELELKSK 255 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~-~~l~~El~-~le~e~~ 255 (516)
-..+.+.+..+..=-.+|...++++...........++-..+.++-...+.++..++..-+.. .++-..|+ .++.-.+
T Consensus 38 ~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K 117 (253)
T 2ykt_A 38 GKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSR 117 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345777777777777788888887764322211224554444444444444444444332221 11111111 2344444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010177 256 RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (516)
Q Consensus 256 ~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktN 303 (516)
.+...++.|..+|..... .++-++..+-+|+|..
T Consensus 118 ~v~~~~K~~~~e~k~~~~--------------~l~K~~~e~~kl~KK~ 151 (253)
T 2ykt_A 118 YLSAALKKYQTEQRSKGD--------------ALDKCQAELKKLRKKS 151 (253)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhHh--------------HHHHHHHHHHHHHhhc
Confidence 556666666666654332 3555566677777764
No 242
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=23.52 E-value=5.9e+02 Score=25.84 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL--SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (516)
Q Consensus 169 LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~--see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 246 (516)
++......+++.|..-+.+.++.++.|.....++.++-.... .-+...+...+.-.+.+......+...+. .++++-
T Consensus 91 lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~-ke~eK~ 169 (406)
T 4dyl_A 91 HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD-KDRDKA 169 (406)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC----------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHhh
Q 010177 247 LKELELKSKRFKELEERYWQEFNNFQFQLIA-HQEERDAISSKIEVSQ-AHLELLKR 301 (516)
Q Consensus 247 l~~le~e~~~L~~eE~~~W~e~N~~q~qL~~-~~ee~~sl~~q~~~a~-~qLdkLrk 301 (516)
...++.....+..-...|-..++.+...... +...+..+...++... ..+..|+.
T Consensus 170 ~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~ 226 (406)
T 4dyl_A 170 KDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKE 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 243
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.43 E-value=7.1e+02 Score=26.72 Aligned_cols=138 Identities=12% Similarity=0.254 Sum_probs=63.6
Q ss_pred CcccCCcchHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCHHHHHHHHHHHHHHHHHHH
Q 010177 162 QTQVEQPLCLE----------CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE-ARDVLSEADFLKEKLKIEEEERKLE 230 (516)
Q Consensus 162 ~s~IDhPLC~e----------C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~-~~~~~see~l~~e~~~Le~EE~~L~ 230 (516)
+++-|-|.|.| | +|+.-+...+++...=..-|+..-.+ ....-+...+...+. +.+.
T Consensus 29 k~~~D~pgCaDeDwGvkCPSGC------rLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~------~~lk 96 (491)
T 1m1j_A 29 KYEKNWPICVDDDWGTKCPSGC------RMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETI------NILK 96 (491)
T ss_dssp SSTTCCCBCCTTSTTTEECCST------THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH------HHHH
T ss_pred cccCCCCCCccccccCCCCCcc------chhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHH------HHHH
Confidence 44678888843 4 47888888777666555444332211 110000111111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 010177 231 AAIEETEKQNAEVNAELKELELKSKRFKE-LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (516)
Q Consensus 231 ~eL~~LE~e~~~l~~El~~le~e~~~L~~-eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F 309 (516)
+.+.+.......+.+-..+|+..+.-|++ ...++ ..++.||..+.....+.+-|+.-+. .|++.-+.--.-+-.|
T Consensus 97 ~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~---~q~~~Cr~pC~r~~~y 172 (491)
T 1m1j_A 97 PGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDID---IKIRACKGSCARSFDY 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTTTTBSSCCCC
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhhhhHHh
Confidence 22223333333333333344444444432 22233 5566666665555555554443332 3455556666666667
Q ss_pred eeeecC
Q 010177 310 PIWHDG 315 (516)
Q Consensus 310 ~I~hdG 315 (516)
.|.++.
T Consensus 173 ~VD~~~ 178 (491)
T 1m1j_A 173 QVDKEG 178 (491)
T ss_dssp CCCTTT
T ss_pred hhcHHH
Confidence 766654
No 244
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.38 E-value=4.8e+02 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010177 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (516)
Q Consensus 265 W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV 304 (516)
.++|..|-.--..+--+...|..++..-..||+.|+.+=|
T Consensus 147 l~DY~~fv~mKa~Ll~eqReLddkIklgeEQL~~L~~sL~ 186 (190)
T 3thf_A 147 CADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDALV 186 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhc
Confidence 3455555444445556777888999999999999987644
No 245
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.37 E-value=2.5e+02 Score=22.91 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~~ 294 (516)
+|+.|..+.+.++..|.+++. .+..+-+.+-.....++.++.....+.......|+...+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp --------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 246
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.25 E-value=40 Score=22.24 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 010177 239 QNAEVNAELKELEL 252 (516)
Q Consensus 239 e~~~l~~El~~le~ 252 (516)
|...+++.|..|+.
T Consensus 8 endaleqkiaalkq 21 (28)
T 3ra3_A 8 ENDALEQKIAALKQ 21 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33333333333333
No 247
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.13 E-value=82 Score=25.28 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 228 KLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 228 ~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
.|..++..++.+.+++.++...|+.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 248
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.11 E-value=4.7e+02 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 247 LKELELKSKRFKELEERY 264 (516)
Q Consensus 247 l~~le~e~~~L~~eE~~~ 264 (516)
...++..+..+..++.+|
T Consensus 92 r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 92 KDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555555555
No 249
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=22.63 E-value=3.1e+02 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010177 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (516)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (516)
.+++.+.+-+..+.++ ..|...|+.+.-
T Consensus 216 ~l~~~l~~al~~~~~d-~~~~~~l~~~g~ 243 (310)
T 3n5l_A 216 EQKNKLRDFFFKYGAN-AEQKKVLADLQW 243 (310)
T ss_dssp HHHHHHHHHHHHCCCS-HHHHHHHHHTTE
T ss_pred HHHHHHHHHHHhcCCC-hhHHHHHHhcCc
Confidence 4556666665555433 356777776653
No 250
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.63 E-value=2.6e+02 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 212 EADFLKEKLKIEEEERKLEAAIEETEK 238 (516)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~LE~ 238 (516)
.+.+..+.+.|+.|-..|++||+.--.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 344455555555555555555554433
No 251
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.50 E-value=84 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.|.++|...++.+.-|..++.|...+
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555554444
No 252
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.35 E-value=2.4e+02 Score=20.87 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 251 (516)
+|++.--.|+..-+.||+-.+.+..||..|+
T Consensus 14 rlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 253
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.26 E-value=2.4e+02 Score=24.83 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 237 EKQNAEVNAELKELE 251 (516)
Q Consensus 237 E~e~~~l~~El~~le 251 (516)
+...+++++++.+|+
T Consensus 101 ~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 101 KQQEANVLQLIQDTE 115 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 254
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=22.22 E-value=3.6e+02 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 224 EEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 224 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
.+++....+|.....+......+|..|...
T Consensus 19 ~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~ 48 (150)
T 3ajw_A 19 KEVDDAARLLGEMRRGCQQAEEQLKMLIDY 48 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555443
No 255
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.21 E-value=1.4e+02 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 230 EAAIEETEKQNAEVNAELKELELKSKRF 257 (516)
Q Consensus 230 ~~eL~~LE~e~~~l~~El~~le~e~~~L 257 (516)
.+.+.+||.+.++|..+-..|..+...|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655555555554444
No 256
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.03 E-value=2.6e+02 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 221 KIEEEERKLEAAIEETEKQNAEVNAEL 247 (516)
Q Consensus 221 ~Le~EE~~L~~eL~~LE~e~~~l~~El 247 (516)
.|...-.+|.+.|.+.-.+...+.+++
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333333333
No 257
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=21.97 E-value=6.4e+02 Score=25.63 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 010177 193 EAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA---------------EVNAELKELELKSKRF 257 (516)
Q Consensus 193 d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~---------------~l~~El~~le~e~~~L 257 (516)
+.|+..+++....-. -.+.+.+.+.+||.+...|......-|+.++ +++.+|+++-.+.+.+
T Consensus 4 ~~ye~ai~~~qen~~---k~e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l~~~~e~~ 80 (384)
T 3tnf_B 4 DEYEQAIKRAQENIK---KGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKL 80 (384)
T ss_dssp HHHHHHHHHHHTTTT---TTTHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHH
Confidence 456666665543111 1245666777777777776665544444333 4556666665554333
No 258
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.95 E-value=2.2e+02 Score=29.16 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (516)
Q Consensus 233 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~q~qL~~~~ee~~sl~~q~~~a~ 293 (516)
+..+++|.+.++.++++++++ ....|..|=..|+.++.+++ .|+-|++.++-..
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~k---A~~~E~~Yn~~~dKmeqE~l----rRRkLENSIdElK 58 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKE---ISKQEKFYNDTYNTVCKELL----RSRRLENSIIEQK 58 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHhc
Confidence 334444444444555555544 23344455566666655533 3445555554433
No 259
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.60 E-value=13 Score=36.53 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=16.0
Q ss_pred HHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010177 295 HLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (516)
Q Consensus 295 qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (516)
++..| .+||-+--..+.++.+. |-|+-.|.
T Consensus 191 ~~~ql-y~~vt~i~w~~~~~~~~--i~g~~~~~ 220 (250)
T 2ve7_C 191 YVAQL-YHQVSKIEWEYECEPGM--VKGIHHGP 220 (250)
T ss_dssp HHHHH-HHHHHCCEECSCCTTTC--EEEEC---
T ss_pred HHHHH-HHHHhhceeecccCcch--hceeeecc
Confidence 44555 56666666666665544 55555553
No 260
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.26 E-value=2e+02 Score=24.38 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 178 SDKLDKEVDDVTRDIEAY 195 (516)
Q Consensus 178 le~Ld~qle~~~~E~d~Y 195 (516)
++.++.+|+.+..|...|
T Consensus 16 LD~ir~Efe~~~~e~~~~ 33 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTY 33 (92)
T ss_dssp -CCTTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 261
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.26 E-value=1.7e+02 Score=23.41 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010177 232 AIEETEKQNAEVNAELKELE 251 (516)
Q Consensus 232 eL~~LE~e~~~l~~El~~le 251 (516)
.+..|.++..+|+.+|..++
T Consensus 18 ~f~~L~~eH~~LD~~I~~le 37 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAE 37 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555554
No 262
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.17 E-value=2.9e+02 Score=25.88 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010177 275 LIAHQEERDAISSKIEVSQAHLELLKR 301 (516)
Q Consensus 275 L~~~~ee~~sl~~q~~~a~~qLdkLrk 301 (516)
+.+.+.+....+++++.++.+|+.++.
T Consensus 100 ~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 100 YDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888888888876654
No 263
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.99 E-value=59 Score=25.71 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (516)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 253 (516)
.+..+++.+..+++++|.-++.+..+|+.-|..+|.+
T Consensus 19 ~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~ 55 (64)
T 3t97_C 19 REVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEES 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666655555555544444433
No 264
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.97 E-value=6e+02 Score=24.93 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=3.9
Q ss_pred cCCCCC--ceeecc
Q 010177 66 STRMDN--SFVVLP 77 (516)
Q Consensus 66 ~~~~d~--s~vvl~ 77 (516)
+..+|. +|=||.
T Consensus 18 ~~~~D~kTtFkVLS 31 (242)
T 3uux_B 18 GSHMDNKTCFRMLT 31 (242)
T ss_dssp ----CHHHHHHHHT
T ss_pred CCccCccchhhhHH
Confidence 445554 554444
No 265
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.51 E-value=1.9e+02 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010177 236 TEKQNAEVNAELKELELKSKR 256 (516)
Q Consensus 236 LE~e~~~l~~El~~le~e~~~ 256 (516)
||...+++-.+...++.|..+
T Consensus 6 ledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333
No 266
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.38 E-value=4e+02 Score=23.92 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010177 182 DKEVDDVTRDIEAYE 196 (516)
Q Consensus 182 d~qle~~~~E~d~Y~ 196 (516)
+..+...+..+..|.
T Consensus 21 ~~~~~~le~l~~~l~ 35 (135)
T 2e7s_A 21 KAAIENYNQLKEDYN 35 (135)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444333333
No 267
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.33 E-value=1.6e+02 Score=30.39 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010177 397 YDKAMTLFLSCLKDFAE 413 (516)
Q Consensus 397 FD~AM~afL~cl~q~~e 413 (516)
-..||..+.+-|.+...
T Consensus 262 r~~A~~~L~~~L~~~~~ 278 (354)
T 3d5a_X 262 REKALMILRSRLLEMKR 278 (354)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778777777766643
No 268
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.23 E-value=2.8e+02 Score=20.80 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010177 222 IEEEERKLEAAIEETEKQ 239 (516)
Q Consensus 222 Le~EE~~L~~eL~~LE~e 239 (516)
||..-..|++.|..||+.
T Consensus 29 lendnanlekdianlekd 46 (56)
T 3he4_A 29 LENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHH
Confidence 344444444444433333
No 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.14 E-value=4.1e+02 Score=34.43 Aligned_cols=69 Identities=14% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010177 180 KLDKEVDDVTRDIEAYEACLQRLEGE--------ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (516)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~--------~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 248 (516)
.|+++-.++.++...++.-|+.|+.. ..+.++++++.+-++..+.+-.+..+++++.+....++++..+
T Consensus 2143 dLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~ 2219 (2695)
T 4akg_A 2143 EMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVE 2219 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777788888877643 2245667777777766666666666666665555555544333
Done!