BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010178
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLI|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|B Chain B, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|C Chain C, Sulfhydryl Oxidase Fragment Of Human Qsox1
Length = 261
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 299 WIFCRGSKNDTRGFSCGLWVLLHSLSVRI---------DDGESQFTFTAVCDFIHNFFVC 349
WI C+GS+ RGF C LWVL H L+V+ + +++ A+ ++H FF C
Sbjct: 105 WIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGC 164
Query: 350 EECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDPKFPKIIWPP 409
+C HF QM ++ LWLWS+HN+VN RL A + DP+FPK+ WPP
Sbjct: 165 RDCASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARL----AGAPSEDPQFPKVQWPP 220
Query: 410 KQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSL 452
++LCS+C+ + + WD + FL ++ + + L
Sbjct: 221 RELCSACH------NERLDVPVWDVEATLNFLKAHFSPSNIIL 257
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 180/444 (40%), Gaps = 56/444 (12%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA---RLFNGPNAAHPGII 105
V+L+ +F V R P +V F+ + C ACR Y + K A ++ +G +A I
Sbjct: 26 VDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQ--IA 83
Query: 106 LMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ-TAD 164
V+CA +++ LC K+ + P L + P + E E A E+ D
Sbjct: 84 TAAAVNCASEVD--LCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVD 141
Query: 165 GLLTWINKQTSRSYGLDD---EKFENEQLPSNISDPGQIARAVYDVEEA-----TTTAFD 216
L + + + ++ +DD E+ + S + R+V +E+ TT +
Sbjct: 142 ELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVETTELYA 201
Query: 217 IILDHKMIKSETRASLIRFLQVLVAHHPSRRCRKGSAKVLVNFD-------DFSPSHMQS 269
+ S + + LV P R VL+ D D S ++S
Sbjct: 202 TDIAGAFF------SAMHYDVSLVGTEPRERLTALEDFVLLVKDSLPSIGADGVVSALES 255
Query: 270 ADKQE---VVXXXXXXXXXXFPICGKEVPRGY-WIFCRGSKNDTRGFSCGLWVLLHSLSV 325
+ V P G PR W CRGS RGF CG+W+LLH+L+V
Sbjct: 256 ITAERPFTVASWQDAVVKSGIPFDGS--PRNVRWRTCRGSSPQYRGFPCGMWLLLHALTV 313
Query: 326 RIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVN 385
+ + + ++I FF C+ECR HF Q F+ D L LW HN VN
Sbjct: 314 --NTPADRNVLEVIQNYIRYFFSCKECRDHFIQF------NFSPNEDPVLQLWRAHNNVN 365
Query: 386 ERLMKLEASLKTG-DPKFPKIIWPPKQLCSSCY-------RSHHHGDMKFRQIDWDQDEV 437
RL A++K G DP PK +P + C+ CY +H G +K R + WD V
Sbjct: 366 ARL----ANVKDGADPLVPKRQFPTLEACTECYDGAGNFIEAHVTGFLKQRYL-WDPKAV 420
Query: 438 FKFLTNYYGNTLVSLYKDREFLRN 461
+N N + KD RN
Sbjct: 421 GLMESNDDLNEVDPASKDANVGRN 444
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 299 WIFCRGSKNDTRGFSCGLWVLLHSLSVRI---------DDGESQFTFTAVCDFIHNFFVC 349
W+ C+GS+ RGF C LWVL H L+V+ + + Q A+ ++ FF C
Sbjct: 362 WVGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGC 421
Query: 350 EECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDPKFPKIIWPP 409
+ HF QM ++ + LWLW++HN+VN RL + + DP FPK+ WPP
Sbjct: 422 RDSADHFEQMAAASMHQVRSPSNAILWLWTSHNRVNARL----SGALSEDPHFPKVQWPP 477
Query: 410 KQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYY 445
++LCS+C H ++ + WD FL ++
Sbjct: 478 RELCSAC-----HNELNGQVPLWDLGATLNFLKAHF 508
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128
VEFFA+WC + P ++++A N P + L +DCA + N+ +C +F++
Sbjct: 34 AVEFFASWCGHAIAFAPTWKELA---NDVKDWRPALNLAV-LDCAEETNSAVCREFNIAG 89
Query: 129 YPML 132
+P +
Sbjct: 90 FPTV 93
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 117/444 (26%), Positives = 178/444 (40%), Gaps = 56/444 (12%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA---RLFNGPNAAHPGII 105
V+L+ +F V R P +V F+ + C A R Y + K A ++ +G +A I
Sbjct: 26 VDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQ--IA 83
Query: 106 LMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ-TAD 164
V+CA +++ LC K+ + P L + P + E E A E+ D
Sbjct: 84 TAAAVNCASEVD--LCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVD 141
Query: 165 GLLTWINKQTSRSYGLDD---EKFENEQLPSNISDPGQIARAVYDVEEA-----TTTAFD 216
L + + + ++ +DD E+ + S + R+V +E+ TT +
Sbjct: 142 ELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVETTELYA 201
Query: 217 IILDHKMIKSETRASLIRFLQVLVAHHPSRRCRKGSAKVLVNFD-------DFSPSHMQS 269
+ S + + LV P R VL+ D D S ++S
Sbjct: 202 TDIAGAFF------SAMHYDVSLVGTEPRERLTALEDFVLLVKDSLPSIGADGVVSALES 255
Query: 270 ADKQE---VVXXXXXXXXXXFPICGKEVPRGY-WIFCRGSKNDTRGFSCGLWVLLHSLSV 325
+ V P G PR W CRGS RGF CG+W+LLH+L+V
Sbjct: 256 ITAERPFTVASWQDAVVKSGIPFDGS--PRNVRWRTCRGSSPQYRGFPCGMWLLLHALTV 313
Query: 326 RIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVN 385
+ + + ++I FF C+E R HF Q F+ D L LW HN VN
Sbjct: 314 --NTPADRNVLEVIQNYIRYFFSCKESRDHFIQF------NFSPNEDPVLQLWRAHNNVN 365
Query: 386 ERLMKLEASLKTG-DPKFPKIIWPPKQLCSSCY-------RSHHHGDMKFRQIDWDQDEV 437
RL A++K G DP PK +P + C+ CY +H G +K R + WD V
Sbjct: 366 ARL----ANVKDGADPLVPKRQFPTLEACTECYDGAGNFIEAHVTGFLKQRYL-WDPKAV 420
Query: 438 FKFLTNYYGNTLVSLYKDREFLRN 461
+N N + KD RN
Sbjct: 421 GLMESNDDLNEVDPASKDANVGRN 444
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 49 VELNATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM 107
+EL NF++ + DT A +VEFFA WC C+ P+YE A GI+ +
Sbjct: 4 LELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK-------GIVPL 56
Query: 108 TRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLL 167
+VDC NTN C+K+ V YP L + ++ +E A + +TADG++
Sbjct: 57 AKVDCT--ANTNTCNKYGVSGYPTL-------------KIFRDGEEAGAYDGPRTADGIV 101
Query: 168 TWINKQTS 175
+ + KQ
Sbjct: 102 SHLKKQAG 109
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 49 VELNATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM 107
+EL NF++ + DT A +VEFFA WC + P+YE A GI+ +
Sbjct: 4 LELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK-------GIVPL 56
Query: 108 TRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLL 167
+VDC NTN C+K+ V YP L + ++ +E A + +TADG++
Sbjct: 57 AKVDCT--ANTNTCNKYGVSGYPTL-------------KIFRDGEEAGAYDGPRTADGIV 101
Query: 168 TWINKQTS 175
+ + KQ
Sbjct: 102 SHLKKQAG 109
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA-RLFNGPNAAHPGIILMTRVD 111
A NFD ++ + ++EF+A WC C+N +P+Y+++ +L PN I++ ++D
Sbjct: 359 AENFDEIVNNENKD-VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN------IVIAKMD 411
Query: 112 CALKINTNLCDKFSVGHYPMLLWG------SPSKFVAG 143
++ + V +P + + +P K+ G
Sbjct: 412 ATA---NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGG 446
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIIL 106
H EL +FD + +T T ++VEF+A WC C+ + K A+ +G ++
Sbjct: 18 HISELTPKSFDKAIHNTNYT-SLVEFYAPWCGHCKKLSSTFRKAAKRLDG-------VVQ 69
Query: 107 MTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139
+ V+C L N LC K+ V +P L+ P K
Sbjct: 70 VAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV 110
L NFD V+ D A +VEF+A WC C+ P+YEK A+ + + P + +V
Sbjct: 135 LTKENFDEVVND--ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIP----LAKV 188
Query: 111 DCALKINTNLCDKFSVGHYPML 132
D + T+L +F V YP L
Sbjct: 189 DATAE--TDLAKRFDVSGYPTL 208
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 33 LRSLGDTEKKVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
L S D E K E + + LN NFD + D ++EF+A WC C+ + P+YEK+A
Sbjct: 3 LGSEDDLEVKEE-NGVLVLNDANFDNFVADK--DTVLLEFYAPWCGHCKQFAPEYEKIAN 59
Query: 93 LFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132
+ + P + ++D + L +F V YP +
Sbjct: 60 ILKDKDPPIP----VAKIDATSA--SVLASRFDVSGYPTI 93
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 31/137 (22%)
Query: 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPG 103
E DH + L +NF L Y +VEF+A WC C+ P+Y K A G A
Sbjct: 5 EEDHVLVLRKSNFAEAL--AAHKYLLVEFYAPWCGHCKALAPEYAKAA----GKLKAEGS 58
Query: 104 IILMTRVDCALKINTNLCDKFSVGHYPMLLW------GSPSKFVAGSWEPNQEKKEIRAL 157
I + +VD + ++L ++ V YP + + SP ++ AG
Sbjct: 59 EIRLAKVDATEE--SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAG-------------- 102
Query: 158 EDWQTADGLLTWINKQT 174
+ AD ++ W+ K+T
Sbjct: 103 ---READDIVNWLKKRT 116
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
+ L NFD V+ + A +VEF+A WC C+ P+YEK A+ + + P +
Sbjct: 10 LSLTKDNFDDVVNN--ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIP----LA 63
Query: 109 RVDCALKINTNLCDKFSVGHYPML 132
+VD + T+L +F V YP L
Sbjct: 64 KVDATEQ--TDLAKRFDVSGYPTL 85
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV 110
LN NFD + D ++EF+A WC C+ + P+YEK+A + I + ++
Sbjct: 22 LNDGNFDNFVADK--DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPP----IAVAKI 75
Query: 111 DCALKINTNLCDKFSVGHYPML 132
D + L KF V YP +
Sbjct: 76 DATSA--SMLASKFDVSGYPTI 95
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125
T+ VV+F+A WC C+N+ P++E +AR+ G A +VDC T C K
Sbjct: 22 THWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRA-------GKVDCQAYPQT--CQKAG 72
Query: 126 VGHYPMLLWGSPSKFVAGSWEP---NQEKKEIRAL 157
+ YP + + WE +++ K I AL
Sbjct: 73 IKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGI--IL 106
+ L NFD + + ++F+A WC C+ P +E++++ PG+ +
Sbjct: 10 LALTENNFDDTIAEG---ITFIKFYAPWCGHCKTLAPTWEELSK------KEFPGLAGVK 60
Query: 107 MTRVDCALKINTNLCDKFSVGHYPMLL 133
+ VDC + N+C K+SV YP LL
Sbjct: 61 IAEVDCTAE--RNICSKYSVRGYPTLL 85
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGI--IL 106
+ L NFD + + ++F+A WC C+ P +E++++ PG+ +
Sbjct: 8 LALTENNFDDTIAEG---ITFIKFYAPWCGHCKTLAPTWEELSK------KEFPGLAGVK 58
Query: 107 MTRVDCALKINTNLCDKFSVGHYPMLL 133
+ VDC + N+C K+SV YP LL
Sbjct: 59 IAEVDCTAE--RNICSKYSVRGYPTLL 83
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGI--IL 106
+ L NFD + + ++F+A WC C+ P +E++++ PG+ +
Sbjct: 3 LALTENNFDDTIAEG---ITFIKFYAPWCGHCKTLAPTWEELSK------KEFPGLAGVK 53
Query: 107 MTRVDCALKINTNLCDKFSVGHYPMLL 133
+ VDC + N+C K+SV YP LL
Sbjct: 54 IAEVDCTAE--RNICSKYSVRGYPTLL 78
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGII 105
D + L NFD V+R+ +V+ +A WC C Y+P Y+KVA + G
Sbjct: 4 DVTLVLTEENFDEVIRNN--KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-------A 54
Query: 106 LMTRVDCALKINTNLCDKFSVGHYPMLL 133
+ R++ + N + DK+SV + P L
Sbjct: 55 VFGRLN--VDENQKIADKYSVLNIPTTL 80
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK 115
FDA++ D P ++EF+A WC C+ +P Y + + + G +++ ++D
Sbjct: 17 FDAIVMD-PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-----LVIAKMDATAN 70
Query: 116 INTNLCDKFSVGHYPMLLWG------SPSKFVAGS 144
TN D++ V +P + + +P KF G+
Sbjct: 71 DITN--DQYKVEGFPTIYFAPSGDKKNPIKFEGGN 103
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128
+ EFFA WC C+N P+Y K A N I + ++DC N +LC + ++
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKN------ITLAQIDCTE--NQDLCMEHNIPG 86
Query: 129 YPML 132
+P L
Sbjct: 87 FPSL 90
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
+L N D ++ D P +V ++A WC C+ P Y+++A +
Sbjct: 362 QLVGKNHDEIVND-PKKDVLVLYYAPWCGHCKRLAPTYQELADTY 405
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129
VEFFA+WC C + P + +A A P + L +DCA + N+ +C F++ +
Sbjct: 35 VEFFASWCGHCIAFAPTWXALA---EDVKAWRPALYLAA-LDCAEETNSAVCRDFNIPGF 90
Query: 130 PMLLW-------GSPSKF-VAGSWEPNQEKKEIRALE 158
P + + GS + F VAG+ ++ I ALE
Sbjct: 91 PTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALE 127
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 317 WVLLHSLSVRIDDG---ESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDF 373
W LH+L+ + + + + + + + C EC HF ++ S + +F
Sbjct: 18 WTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEF 77
Query: 374 ALWLWSTHNQVNERLMKLEASLKTGDPKFPKI 405
+ WL HN VN L KL + D ++ K+
Sbjct: 78 SQWLCHVHNTVNRSLGKLVFPCERVDARWGKL 109
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + + FIH F+ CEEC + + + P +TR
Sbjct: 41 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR-NHPDTRTRAA 99
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 100 FTQWLCHLHNEVNRKLGK 117
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTR-D 372
W LH+L+ D + + FIH F+ CEEC + + + P TR
Sbjct: 41 WAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR-SQPDTSTRVS 99
Query: 373 FALWLWSTHNQVNERLMK 390
F+ WL HN+VN +L K
Sbjct: 100 FSQWLCRLHNEVNRKLGK 117
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 35 SLGDTEKKVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
+LG E + V E+N F +++ V++ F WC C+ P+YEK+A
Sbjct: 7 ALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLA 63
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
+E+ NFD L P +V+F+A WC CR P E++A+ + G +L+
Sbjct: 5 IEVTDQNFDETLGQHP--LVLVDFWAEWCAPCRXIAPILEEIAKEYEGK-------LLVA 55
Query: 109 RVDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQEKKEIRA 156
++D + N ++ V P ++ G P + + G+ Q K+ +A
Sbjct: 56 KLD--VDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGA----QPKRNYQA 100
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
+E+ NFD L P +V+F+A WC CR P E++A+ + G +L+
Sbjct: 4 IEVTDQNFDETLGQHP--LVLVDFWAEWCAPCRXIAPILEEIAKEYEGK-------LLVA 54
Query: 109 RVDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQEKKEIRA 156
++D + N ++ V P ++ G P + + G+ Q K+ +A
Sbjct: 55 KLD--VDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGA----QPKRNYQA 99
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + + FIH F+ CEEC + + + P +TR
Sbjct: 27 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR-NHPDTRTRAA 85
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 86 FTQWLCHLHNEVNRKLGK 103
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTR-D 372
W LH+L+ D + + FIH F+ CEEC + + + P TR
Sbjct: 27 WAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR-SQPDTSTRVS 85
Query: 373 FALWLWSTHNQVNERLMK 390
F+ WL HN+VN +L K
Sbjct: 86 FSQWLCRLHNEVNRKLGK 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
A + + ++ + VV+FFA WC CRN P+ E +A+
Sbjct: 7 AADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAK 46
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG--PNAAHPGIILMT 108
L+ N D +L + A A+V F+A+WC + P +E+ + + PN ++
Sbjct: 10 LDTENIDEILNN--ADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQ---VVFA 64
Query: 109 RVDCALKINTNLCDKFSVGHYPML 132
RVDC ++++ ++ + YP L
Sbjct: 65 RVDC--DQHSDIAQRYRISKYPTL 86
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 69 VVEFFANWCPACRNYKPQYEKVAR 92
++EF+A WCPAC+N +P++E A
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAE 49
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
+EL +FD + D+ + +VEF+A WC C+N +P++ A G + +
Sbjct: 10 IELTDDSFDKNVLDSEDVW-MVEFYAPWCGHCKNLEPEWAAAASEV---KEQTKGKVKLA 65
Query: 109 RVDCALKINTNLCDKFSVGHYPML 132
VD +N L ++ + +P +
Sbjct: 66 AVDAT--VNQVLASRYGIRGFPTI 87
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125
T+ VV+F+A W +N+ P++E +AR+ G + +VDC T C K
Sbjct: 676 THWVVDFYAPWSGPSQNFAPEFELLARMIKGK-------VRAGKVDCQAYPQT--CQKAG 726
Query: 126 VGHYP 130
+ YP
Sbjct: 727 IKAYP 731
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 29 SRAILRSLGDTEKKVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE 88
+ IL + K+ H L NF A ++ +V+FFA W P R P+
Sbjct: 423 GKKILYDILAFAKESVNSHVTTLGPQNFPASDKEP----WLVDFFAPWSPPSRALLPELR 478
Query: 89 KVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130
K + L G + + +DC I+ LC+ +++ YP
Sbjct: 479 KASTLLYGQ-------LKVGTLDCT--IHEGLCNMYNIQAYP 511
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Human Protein Disulfide-Isomerase A3
Length = 142
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA-RLFNGPN 98
A NFD ++ + ++EF+A WC C+N +P+Y+++ +L PN
Sbjct: 34 AENFDEIVNNENKD-VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN 79
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIHNF---FVCEECRQHFYQMCSSVTSPFNKTRDF 373
W LH ++ D S +I NF C C+ H + + N + DF
Sbjct: 12 WRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDF 71
Query: 374 ALWLWSTHNQVNERLMK 390
W ++ HN VN RL K
Sbjct: 72 QYWTFAFHNNVNNRLNK 88
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125
T VV+F A WC C+ P+ EK+ A G ++M +VD + +T+L ++
Sbjct: 32 TPVVVDFHAQWCGPCKILGPRLEKMV-------AKQHGKVVMAKVD--IDDHTDLAIEYE 82
Query: 126 VGHYPMLL 133
V P +L
Sbjct: 83 VSAVPTVL 90
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + + FIH F+ EEC + + + P +TR
Sbjct: 28 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR-NHPDTRTRAA 86
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 87 FTQWLCHLHNEVNRKLGK 104
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
A N++ ++ D ++EF+A WC C+ P+YE++ L+
Sbjct: 14 AKNYNEIVLDDTKD-VLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + + FIH F+ EEC + + + P +TR
Sbjct: 17 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR-NHPDTRTRAA 75
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 76 FTQWLCHLHNEVNRKLGK 93
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
V E+N F +++ V++ F WC C+ P+YEK+A
Sbjct: 5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLA 51
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
D +EL +NF+ + + + +VEF+A WC C+ P+++K A
Sbjct: 17 DDVIELTPSNFNREVIQSDGLW-LVEFYAPWCGHCQRLTPEWKKAA 61
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 51 LNATNFDAV-LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
LN N + V L D +V F+A WCP CR P ++ N A P L
Sbjct: 13 LNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL----NAAXAGKPFRXLCVS 68
Query: 110 VD 111
+D
Sbjct: 69 ID 70
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN--GPNAAHPGIILMTRVDCALKINT 118
RD T+ +VEFFANW C+++ P Y ++ +N G N + T V K++T
Sbjct: 23 RDKRVTW-IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVST 81
Query: 119 NLCDK 123
+ K
Sbjct: 82 SPLTK 86
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC 121
+T V++F A+WC CR P + +A+ F PNA + L VD LK +
Sbjct: 31 NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF--PNA----VFLKVDVD-ELK---PIA 80
Query: 122 DKFSVGHYPMLLW 134
++FSV P L+
Sbjct: 81 EQFSVEAMPTFLF 93
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 69 VVEFFANWCPACRNYKPQYEKVA-------RLFNGPNAAHPGI 104
+V+F+A WC CR PQ++ A RL AHP +
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAV 110
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
FD+++ +V+FFA WC C+ P YE+ ++ +
Sbjct: 19 FDSIISQN--ELVIVDFFAEWCGPCKRIAPFYEECSKTY 55
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN 95
+A+ +D+ L + VV+FFA WC C+ P EK A ++
Sbjct: 7 SASEYDSALA-SGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS 49
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN 95
+A+ +D+ L + VV+FFA WC C+ P EK A ++
Sbjct: 14 SASEYDSALA-SGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS 56
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125
T V+ FFA WC AC + +K+ + + I + +VD L N +L KFS
Sbjct: 43 TVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-------IYLLKVD--LDKNESLARKFS 93
Query: 126 VGHYPMLL 133
V P ++
Sbjct: 94 VKSLPTII 101
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
+ L++ NFD+ L AVV+F+A WC C P E++A
Sbjct: 2 IHLDSKNFDSFL--ASHEIAVVDFWAEWCAPCLILAPIIEELA 42
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 317 WVLLHSLSVRIDDG---ESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDF 373
W H+L R D E + + C EC HF ++ +
Sbjct: 16 WKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAA 75
Query: 374 ALWLWSTHNQVNERLMK 390
A+W HN+VNE L K
Sbjct: 76 AMWGCHIHNKVNEYLKK 92
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 68 AVVEFFANWCPACRNYKPQYEKVARLFNG 96
A+V+F+A+WC C+ P +++A+ ++G
Sbjct: 41 AIVDFYADWCGPCKMVAPILDELAKEYDG 69
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 42 KVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
K + VE + F + P T +V+FFA WC CR P E++AR
Sbjct: 29 KTPLPWVVEADEKGFAQEVAGAPLT--LVDFFAPWCGPCRLVSPILEELAR 77
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLF 94
+V F+A+WCP CR+ P +++ + F
Sbjct: 45 LVNFWASWCPYCRDEXPSXDRLVKSF 70
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
LN+ NFD + T VV+F+A WC C P E++A
Sbjct: 11 LNSKNFDEFI--TKNKIVVVDFWAEWCAPCLILAPVIEELA 49
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 69 VVEFFANWCPACRNYKPQYEKVAR 92
+V FFA WCP CR+ P +V +
Sbjct: 38 IVNFFATWCPPCRSEIPDXVQVQK 61
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLFNGPN 98
VV+F A+WCP C+ P + ++A+ F PN
Sbjct: 30 VVDFTASWCPPCKMIAPIFAELAKKF--PN 57
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + FIH F+ EE + + + P +TR
Sbjct: 28 WAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDLRKRLAR-NHPDTRTRAA 86
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 87 FTQWLXHLHNEVNRKLGK 104
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 39 TEKKVEVDHAVELNAT-NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
T + V + +EL + +++L VV+FFA WC C+ P +++++ ++
Sbjct: 6 TSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA 64
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
L D PA +V+F+A+WC C+ P E++++ + G
Sbjct: 49 LGDKPA---IVDFYADWCGPCKMVAPILEELSKEYAG 82
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
L D PA +V+F+A+WC C+ P E++++ + G
Sbjct: 49 LGDKPA---IVDFYADWCGPCKMVAPILEELSKEYAG 82
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
+ +++L VV+FFA WC C+ P +++++ ++
Sbjct: 14 DLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA 55
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRD- 372
W +LH+L+ D + + FIH F+ EE + + + P +TR
Sbjct: 17 WAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLRKRLAR-NHPDTRTRAA 75
Query: 373 FALWLWSTHNQVNERLMK 390
F WL HN+VN +L K
Sbjct: 76 FTQWLCHLHNEVNRKLGK 93
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 48 AVELNATNFD-AVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
+E+ NF+ VL+ D P +V+F+A WC CR P E++A+ + G
Sbjct: 3 VIEVTDENFEQEVLKSDKPV---LVDFWAPWCGPCRMIAPIIEELAKEYEG 50
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 51 LNATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
L NF A+ D P +V+F+A WC CR P E+ A AH + + +
Sbjct: 5 LTDANFQQAIQGDKPV---LVDFWAAWCGPCRMMAPVLEEFAE-------AHADKVTVAK 54
Query: 110 VDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQE 150
++ + N +F + P L+ G P K + G ++P ++
Sbjct: 55 LN--VDENPETTSQFGIMSIPTLILFKGGEPVKQLIG-YQPKEQ 95
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 52 NATNFDAVLRDT--PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
N FDA + +++F A+WC CR P + + A+ F G + L
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG------AVFLKVD 74
Query: 110 VDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGS 144
VD LK + +K++V P L+ G+ + V G+
Sbjct: 75 VD-ELK---EVAEKYNVEAMPTFLFIKDGAEADKVVGA 108
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 51 LNATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
L NF A+ D P +V+F+A WC CR P E+ A AH + + +
Sbjct: 5 LTDANFQQAIQGDGPV---LVDFWAAWCGPCRMMAPVLEEFAE-------AHADKVTVAK 54
Query: 110 VDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQE 150
++ + N +F + P L+ G P K + G ++P ++
Sbjct: 55 LN--VDENPETTSQFGIMSIPTLILFKGGEPVKQLIG-YQPKEQ 95
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 33 LRSLGDTEKKVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
LRSL D++ ++EV R P ++ F +WC C+ KP +E++A
Sbjct: 1 LRSLSDSDFQLEV---------------RQHPDPI-IIMFTGSWCQPCKKMKPTFEEMAS 44
Query: 93 LFNG 96
G
Sbjct: 45 QMEG 48
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 51 LNATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
L NF A+ D P +V+F+A WC CR P E+ A AH + + +
Sbjct: 5 LTDANFQQAIQGDKPV---LVDFWAAWCGPCRMMAPVLEEFAE-------AHADKVTVAK 54
Query: 110 VDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQE 150
++ + N +F + P L+ G P K + G ++P ++
Sbjct: 55 LN--VDENPETTSQFGIMSIPTLILFKGGRPVKQLIG-YQPKEQ 95
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 51 LNATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109
L NF A+ D P +V+F+A WC CR P E+ A AH + + +
Sbjct: 5 LTDANFQQAIQGDGPV---LVDFWAAWCGPCRMMAPVLEEFAE-------AHADKVTVAK 54
Query: 110 VDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQE 150
++ + N +F + P L+ G P K + G ++P ++
Sbjct: 55 LN--VDENPETTSQFGIMSIPTLILFKGGRPVKQLIG-YQPKEQ 95
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P E++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILEEIADEYQG 51
>pdb|3HD5|A Chain A, Crystal Structure Of A Thiol:disulfide Interchange
Protein Dsba From Bordetella Parapertussis
pdb|3HD5|B Chain B, Crystal Structure Of A Thiol:disulfide Interchange
Protein Dsba From Bordetella Parapertussis
pdb|3HD5|C Chain C, Crystal Structure Of A Thiol:disulfide Interchange
Protein Dsba From Bordetella Parapertussis
Length = 195
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 62 DTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
DTP V+EFFA CP C +P E A+
Sbjct: 22 DTPGKIEVLEFFAYTCPHCAAIEPXVEDWAK 52
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
V E+N F +++ V++ F WC + P+YEK+A
Sbjct: 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLA 50
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 57 DAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
D + D P +V+F+A WC CR P E +A
Sbjct: 18 DVLKNDKPV---LVDFWAAWCGPCRQIAPSLEAIA 49
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 53 ATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
A+ FD A+ +D VV+F+A WC C+ P EK + +
Sbjct: 8 ASEFDSAIAQDK---LVVVDFYATWCGPCKMIAPMIEKFSEQY 47
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 53 ATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
A+ FD A+ +D VV+F+A WC C+ P EK + +
Sbjct: 14 ASEFDSAIAQDK---LVVVDFYATWCGPCKMIAPMIEKFSEQY 53
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 47 HA-VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGII 105
HA V++ +FD+ + + +V+F+A WC +C+ P E++A + G I
Sbjct: 3 HAIVKVTDADFDSKVE---SGVQLVDFWATWCGSCKMIAPVLEELAADYEG-----KADI 54
Query: 106 LMTRVDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQEKKEI 154
L VD N + K+ V P L+ G P V G ++P + E+
Sbjct: 55 LKLDVD----ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG-FQPKENLAEV 101
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGI 104
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQGK------- 62
Query: 105 ILMTRVDCALKINTNLCDKFSVGHYPMLL 133
+T + N K+ + P LL
Sbjct: 63 --LTVAKLNIDQNPGTAPKYGIRGIPTLL 89
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIAEEYQG 51
>pdb|3O5C|A Chain A, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|B Chain B, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|C Chain C, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|D Chain D, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
Length = 320
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 203 AVYDVEEATTTAFDIILDHKMIKSETRASLIRFLQVLVAHHP 244
+V+ +EEA T DI L K+ + ET+ ++ FL L P
Sbjct: 255 SVWTLEEAVNTMADIQLGQKLTEKETK-EMVAFLNSLTGEQP 295
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
V++ +FD+ + + +V+F+A WC C+ P E++A + G IL
Sbjct: 7 VKVTDADFDSKVE---SGVQLVDFWATWCGTCKMIAPVLEELAADYEG-----KADILKL 58
Query: 109 RVDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQEKKEI 154
VD N + K+ V P L+ G P V G ++P + E+
Sbjct: 59 DVD----ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG-FQPKENLAEV 102
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 69 VVEFFANWCPACRNYKPQYEKVA 91
V++F+A WC C+ P +EK++
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKIS 59
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTEDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVAR 92
+F L + V++F+A WC C+ P+ E++++
Sbjct: 10 DFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQ 47
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
+ + D L V++FFA WC C+ P+ +++ F
Sbjct: 12 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF 54
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
+ + D L V++FFA WC C+ P+ +++ F
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF 49
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM 107
AV+ F+A WCP C+ P +VA A+HP + +
Sbjct: 42 AVLWFWAPWCPTCQGEAPVVGQVA-------ASHPEVTFV 74
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108
V++ +FD+ + + +V+F+A WC C+ P E++A + G IL
Sbjct: 7 VKVTDADFDSKVE---SGVQLVDFWATWCGPCKMIAPVLEELAADYEG-----KADILKL 58
Query: 109 RVDCALKINTNLCDKFSVGHYPMLLW---GSPSKFVAGSWEPNQEKKEI 154
VD N + K+ V P L+ G P V G ++P + E+
Sbjct: 59 DVD----ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG-FQPKENLAEV 102
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM 107
AV+ F+A WCP C+ P +VA A+HP + +
Sbjct: 28 AVLWFWAPWCPTCQGEAPVVGQVA-------ASHPEVTFV 60
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDESFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
+ A D +L+D V++F+A WC CR++ P + + A
Sbjct: 39 EVINATAETLDKLLQDD--LPXVIDFWAPWCGPCRSFAPIFAETA 81
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
Length = 154
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 63 TPATY---AVVEFFANWCPACRNYKPQYEKVA 91
TPAT AV+ F+A+WC C+ P +VA
Sbjct: 25 TPATVSKPAVIVFWASWCTVCKAEFPGLHRVA 56
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLFNG 96
+++F A+WC CR P + + A+ F G
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPG 59
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 52
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 48 AVELNATNFD-AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIIL 106
A L+ FD A L+ PA V+ F+ WCP C P +VA AA+P +
Sbjct: 9 ATTLSGAPFDGASLQGKPA---VLWFWTPWCPFCNAEAPSLSQVA-------AANPAVTF 58
Query: 107 M---TRVD 111
+ TR D
Sbjct: 59 VGIATRAD 66
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From
Saccharomyces Cerevisiae In Complex With Thioredoxin
Trx2
Length = 112
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN 95
+A+ +D+ L + VV+FFA WC + P EK A ++
Sbjct: 15 SASEYDSALA-SGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS 57
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae
In Complex With Trx2
Length = 104
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN 95
+A+ +D+ L + VV+FFA WC + P EK A ++
Sbjct: 7 SASEYDSALA-SGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS 49
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 72 FFANWCPACRNYKPQ----YEK 89
F A+WCP CR + PQ YEK
Sbjct: 55 FSASWCPPCRGFTPQLVEFYEK 76
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV 110
L NF+ V D VEF+A WC C+ P ++K+ + H I++
Sbjct: 254 LVGKNFEDVAFDEKKN-VFVEFYAPWCGHCKQLAPIWDKLGETYKD----HENIVI---- 304
Query: 111 DCALKINTNLCDKFSVGHYPML 132
+ N + V +P L
Sbjct: 305 -AKMDSTANEVEAVKVHSFPTL 325
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGPCKMIAPILDEIADDYQG 51
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD VL+ A +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAI--LVDFWAEWCGHCKMIAPILDEIADEYQG 51
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 46 DHAVELNATNFDA-VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
+H + ++ ++FD VL+ + +V+F+A WC C+ P ++ + F G
Sbjct: 2 EHTLAVSDSSFDQDVLK--ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG 51
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96
D + L +FD L +V+F+A WC C+ P +++A + G
Sbjct: 2 DKIIHLTDDSFDTDLVKADGAI-LVDFWAEWCGPCKMIAPILDEIADEYQG 51
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD 111
N T F +++ V++F+A WC C+ +P K+ + A+P + V
Sbjct: 19 NLTEFRNLIKQNDKL--VIDFYATWCGPCKMMQPHLTKLIQ-------AYPDVRF---VK 66
Query: 112 CALKINTNLCDKFSVGHYPMLLWGSPSKFVA 142
C + + ++ + V P + G + +
Sbjct: 67 CDVDESPDIAKECEVTAMPTFVLGKDGQLIG 97
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94
L NF+ V D VEF+A WC C+ P ++K+ +
Sbjct: 12 LVGKNFEDVAFDEKKN-VFVEFYAPWCGHCKQLAPIWDKLGETY 54
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 46 DHAVELNATNFDAVLRDTPATYA----VVEFFANWCPACRNYKPQYEKVARLF 94
D A + N+ + P A V+EFF +CP C + +P K A+ F
Sbjct: 18 DKAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSF 70
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 69 VVEFFANWCPACRNYKPQYE 88
++ F+ +WCP C+ PQ++
Sbjct: 38 ILHFWTSWCPPCKKELPQFQ 57
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 FFANWCPACRNYKPQ 86
F A+WCP CR + PQ
Sbjct: 35 FSASWCPPCRGFTPQ 49
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 FFANWCPACRNYKPQ 86
F A+WCP CR + PQ
Sbjct: 34 FSASWCPPCRGFTPQ 48
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 FFANWCPACRNYKPQ 86
F A+WCP CR + PQ
Sbjct: 35 FSASWCPPCRGFTPQ 49
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 72 FFANWCPACRNYKPQ 86
F A+WCP CR + PQ
Sbjct: 35 FSASWCPPCRGFTPQ 49
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 317 WVLLHSLSVRIDDGESQFTFTAVCDFIHNF---FVCEECRQHFYQMCSSVTSPFNKTRDF 373
W LLHS++ + + F++ F + C C + F + +
Sbjct: 12 WTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREEL 71
Query: 374 ALWLWSTHNQVNERLMK 390
W+ HN+VN++L K
Sbjct: 72 GRWMCEAHNKVNKKLRK 88
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 35 SLGDTEKKVEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA 91
S+ D+EK + AT D + + P +V+F+A WC C+ P E++A
Sbjct: 5 SMTDSEKSATIKVTDASFAT--DVLSSNKPV---LVDFWATWCGPCKMVAPVLEEIA 56
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 69 VVEFFANWCPACRNYKPQYEKVARLFNGPN 98
+V +A WC CR P +++ +GPN
Sbjct: 64 LVNLWATWCVPCRKEMPALDELQGKLSGPN 93
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 28.5 bits (62), Expect = 10.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFN 95
T F L VV+F A WC C+ KP + ++ ++
Sbjct: 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,977,773
Number of Sequences: 62578
Number of extensions: 594345
Number of successful extensions: 1369
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 135
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)