Query 010178
Match_columns 516
No_of_seqs 485 out of 2560
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1731 FAD-dependent sulfhydr 100.0 2.7E-95 6E-100 750.1 25.6 446 43-515 36-604 (606)
2 PF04777 Evr1_Alr: Erv1 / Alr 100.0 2E-29 4.4E-34 212.0 3.4 92 314-409 1-95 (95)
3 KOG3355 Mitochondrial sulfhydr 99.9 3.1E-22 6.8E-27 177.9 6.5 89 315-403 76-167 (177)
4 COG5054 ERV1 Mitochondrial sul 99.8 1.1E-20 2.5E-25 167.1 7.8 87 315-401 85-174 (181)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.8 9.1E-20 2E-24 157.9 11.3 105 44-170 7-113 (113)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.7E-19 8E-24 151.1 11.9 99 47-169 2-100 (101)
7 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.4E-18 3.1E-23 148.1 11.1 102 47-170 2-104 (104)
8 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.7E-18 5.8E-23 147.5 12.1 107 48-170 2-108 (109)
9 KOG0190 Protein disulfide isom 99.8 7.1E-19 1.5E-23 184.3 10.2 114 44-178 23-136 (493)
10 PF00085 Thioredoxin: Thioredo 99.8 3.2E-18 6.9E-23 144.8 12.3 103 48-173 1-103 (103)
11 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.8E-18 6.1E-23 147.5 11.6 107 47-170 2-108 (108)
12 KOG0910 Thioredoxin-like prote 99.8 2.2E-18 4.8E-23 152.8 9.7 106 47-175 44-149 (150)
13 PTZ00443 Thioredoxin domain-co 99.8 1E-17 2.2E-22 161.8 14.2 110 45-176 29-141 (224)
14 cd02994 PDI_a_TMX PDIa family, 99.7 1.2E-17 2.5E-22 141.7 11.3 100 47-172 2-101 (101)
15 cd03065 PDI_b_Calsequestrin_N 99.7 1.4E-17 3.1E-22 145.3 11.0 108 45-174 8-119 (120)
16 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.2E-17 2.7E-22 144.2 10.1 103 47-173 2-115 (116)
17 cd02999 PDI_a_ERp44_like PDIa 99.7 1.6E-17 3.5E-22 141.0 10.0 94 54-170 7-100 (100)
18 cd02956 ybbN ybbN protein fami 99.7 4E-17 8.6E-22 137.0 11.2 96 54-171 1-96 (96)
19 cd03005 PDI_a_ERp46 PDIa famil 99.7 3.6E-17 7.7E-22 138.5 10.5 101 48-170 2-102 (102)
20 cd02992 PDI_a_QSOX PDIa family 99.7 8.4E-17 1.8E-21 140.0 12.4 88 47-139 2-89 (114)
21 PTZ00102 disulphide isomerase; 99.7 1.1E-16 2.4E-21 172.7 15.7 112 45-178 31-142 (477)
22 cd03001 PDI_a_P5 PDIa family, 99.7 9.2E-17 2E-21 136.2 11.8 101 48-170 2-102 (103)
23 cd02993 PDI_a_APS_reductase PD 99.7 9.2E-17 2E-21 138.5 11.3 105 47-170 2-109 (109)
24 cd02963 TRX_DnaJ TRX domain, D 99.7 6.4E-17 1.4E-21 140.0 9.8 102 50-172 8-110 (111)
25 PRK09381 trxA thioredoxin; Pro 99.7 2E-16 4.4E-21 136.0 12.4 107 45-174 2-108 (109)
26 cd02997 PDI_a_PDIR PDIa family 99.7 1.4E-16 3E-21 135.3 10.9 103 48-170 2-104 (104)
27 COG3118 Thioredoxin domain-con 99.7 1E-16 2.3E-21 156.5 11.3 110 45-176 22-132 (304)
28 cd02962 TMX2 TMX2 family; comp 99.7 2.8E-16 6.1E-21 143.0 13.1 89 45-141 27-121 (152)
29 cd02954 DIM1 Dim1 family; Dim1 99.7 7.8E-17 1.7E-21 138.8 8.7 80 53-141 2-81 (114)
30 cd02985 TRX_CDSP32 TRX family, 99.7 2.9E-16 6.4E-21 134.0 10.8 98 52-171 2-100 (103)
31 PHA02278 thioredoxin-like prot 99.7 2.4E-16 5.2E-21 134.3 10.2 95 53-169 4-100 (103)
32 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.5E-16 9.7E-21 132.0 10.9 104 47-170 1-104 (104)
33 KOG0190 Protein disulfide isom 99.7 1.6E-16 3.5E-21 166.7 9.6 123 32-175 350-474 (493)
34 TIGR01126 pdi_dom protein disu 99.7 6.2E-16 1.3E-20 130.5 11.1 102 51-174 1-102 (102)
35 PRK10996 thioredoxin 2; Provis 99.7 1E-15 2.2E-20 137.9 12.3 106 45-174 34-139 (139)
36 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.3E-15 2.9E-20 129.2 11.3 104 48-170 2-105 (105)
37 TIGR00424 APS_reduc 5'-adenyly 99.6 1.1E-15 2.3E-20 161.6 12.7 111 44-172 349-461 (463)
38 cd02948 TRX_NDPK TRX domain, T 99.6 1.7E-15 3.6E-20 129.1 11.1 97 51-172 5-101 (102)
39 cd03000 PDI_a_TMX3 PDIa family 99.6 2.9E-15 6.2E-20 127.9 10.9 97 54-173 7-103 (104)
40 KOG0907 Thioredoxin [Posttrans 99.6 3.9E-15 8.5E-20 127.1 9.2 89 60-172 16-104 (106)
41 PLN00410 U5 snRNP protein, DIM 99.6 9E-15 1.9E-19 130.8 11.3 103 52-175 10-121 (142)
42 TIGR01068 thioredoxin thioredo 99.6 1.2E-14 2.5E-19 122.2 11.4 101 51-174 1-101 (101)
43 cd02950 TxlA TRX-like protein 99.6 1.4E-14 2.9E-19 131.0 12.3 102 53-176 10-112 (142)
44 PLN02309 5'-adenylylsulfate re 99.6 8.9E-15 1.9E-19 154.6 12.6 111 44-173 343-456 (457)
45 cd02961 PDI_a_family Protein D 99.6 1.8E-14 4E-19 120.3 10.5 100 50-170 2-101 (101)
46 cd02965 HyaE HyaE family; HyaE 99.6 1.5E-14 3.3E-19 123.8 10.1 97 47-167 11-109 (111)
47 TIGR01130 ER_PDI_fam protein d 99.6 1.6E-14 3.4E-19 154.8 12.4 112 47-178 2-113 (462)
48 cd02957 Phd_like Phosducin (Ph 99.6 1.7E-14 3.7E-19 125.1 9.9 84 47-141 5-89 (113)
49 KOG4277 Uncharacterized conser 99.5 4.4E-15 9.4E-20 143.5 6.1 92 65-176 43-134 (468)
50 cd02953 DsbDgamma DsbD gamma f 99.5 3.5E-14 7.6E-19 121.0 10.7 97 54-170 2-103 (104)
51 cd02984 TRX_PICOT TRX domain, 99.5 3.7E-14 8E-19 119.0 10.2 78 53-139 2-79 (97)
52 cd02986 DLP Dim1 family, Dim1- 99.5 3.1E-14 6.8E-19 121.8 9.5 77 54-139 3-79 (114)
53 PTZ00102 disulphide isomerase; 99.5 5.9E-14 1.3E-18 151.4 12.4 112 45-176 356-467 (477)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.5 7.8E-14 1.7E-18 121.1 10.6 82 48-141 6-88 (113)
55 KOG0912 Thiol-disulfide isomer 99.5 5E-14 1.1E-18 136.8 8.7 109 51-177 1-109 (375)
56 KOG0908 Thioredoxin-like prote 99.5 9E-14 2E-18 131.8 9.2 105 50-178 6-110 (288)
57 cd02949 TRX_NTR TRX domain, no 99.5 3.6E-13 7.8E-18 113.4 10.5 93 56-171 5-97 (97)
58 PTZ00051 thioredoxin; Provisio 99.4 3.5E-13 7.6E-18 113.3 9.3 77 52-140 7-83 (98)
59 cd02987 Phd_like_Phd Phosducin 99.4 8.4E-13 1.8E-17 123.4 11.0 110 45-172 61-173 (175)
60 TIGR01130 ER_PDI_fam protein d 99.4 1.8E-12 3.8E-17 138.9 13.0 114 45-178 345-458 (462)
61 TIGR01295 PedC_BrcD bacterioci 99.4 1.5E-12 3.3E-17 114.5 9.2 101 47-171 7-121 (122)
62 cd02975 PfPDO_like_N Pyrococcu 99.4 2.5E-12 5.4E-17 111.6 10.1 97 56-175 15-111 (113)
63 cd02947 TRX_family TRX family; 99.4 3.3E-12 7.1E-17 104.5 10.2 91 55-170 2-92 (93)
64 PRK15412 thiol:disulfide inter 99.4 8.9E-12 1.9E-16 117.7 14.1 89 64-175 67-177 (185)
65 PRK03147 thiol-disulfide oxido 99.4 8.3E-12 1.8E-16 116.1 13.6 105 47-172 45-170 (173)
66 cd02951 SoxW SoxW family; SoxW 99.4 3.7E-12 8E-17 112.3 10.3 102 55-175 5-120 (125)
67 cd02952 TRP14_like Human TRX-r 99.3 4.2E-12 9.2E-17 110.6 8.8 80 52-138 8-100 (119)
68 KOG0191 Thioredoxin/protein di 99.3 5.4E-12 1.2E-16 132.6 10.3 106 50-178 33-138 (383)
69 PRK14018 trifunctional thiored 99.3 1.5E-11 3.2E-16 131.9 13.0 89 64-171 55-170 (521)
70 TIGR02738 TrbB type-F conjugat 99.3 2.9E-11 6.4E-16 110.3 12.1 87 66-173 51-152 (153)
71 cd02988 Phd_like_VIAF Phosduci 99.3 2E-11 4.4E-16 115.7 10.7 108 45-172 81-190 (192)
72 KOG0191 Thioredoxin/protein di 99.2 2.3E-11 5E-16 127.9 10.6 111 47-177 145-255 (383)
73 TIGR00411 redox_disulf_1 small 99.2 5.1E-11 1.1E-15 96.5 9.7 80 68-173 2-81 (82)
74 cd02982 PDI_b'_family Protein 99.2 5.5E-11 1.2E-15 100.7 10.1 89 65-173 12-102 (103)
75 cd02959 ERp19 Endoplasmic reti 99.2 3.7E-11 8.1E-16 104.9 6.5 70 64-141 18-90 (117)
76 PRK13728 conjugal transfer pro 99.2 2E-10 4.4E-15 106.9 11.4 87 69-176 73-173 (181)
77 cd03009 TryX_like_TryX_NRX Try 99.2 1.1E-10 2.3E-15 103.8 9.0 74 63-140 16-112 (131)
78 TIGR02187 GlrX_arch Glutaredox 99.2 1.4E-10 3.1E-15 112.2 10.1 90 66-175 20-112 (215)
79 TIGR00385 dsbE periplasmic pro 99.1 4.5E-10 9.8E-15 104.9 11.3 89 64-175 62-172 (173)
80 PRK00293 dipZ thiol:disulfide 99.1 2.7E-10 5.8E-15 125.3 11.0 103 52-173 459-569 (571)
81 TIGR02740 TraF-like TraF-like 99.1 4E-10 8.6E-15 112.6 11.1 97 58-175 159-265 (271)
82 cd03008 TryX_like_RdCVF Trypar 99.1 2.7E-10 5.9E-15 102.9 8.8 79 62-140 22-125 (146)
83 cd02964 TryX_like_family Trypa 99.1 4.5E-10 9.8E-15 100.0 8.8 76 61-140 13-112 (132)
84 PTZ00062 glutaredoxin; Provisi 99.1 6E-10 1.3E-14 106.2 9.7 91 52-175 5-95 (204)
85 cd03010 TlpA_like_DsbE TlpA-li 99.1 5.4E-10 1.2E-14 98.6 8.3 81 64-166 24-126 (127)
86 PF13098 Thioredoxin_2: Thiore 99.1 4.1E-10 8.9E-15 96.9 7.3 90 64-170 4-112 (112)
87 PF13905 Thioredoxin_8: Thiore 99.0 9.3E-10 2E-14 91.9 9.0 68 65-137 1-91 (95)
88 TIGR02187 GlrX_arch Glutaredox 99.0 2.3E-09 5E-14 103.7 10.5 81 66-172 134-214 (215)
89 TIGR00412 redox_disulf_2 small 99.0 2E-09 4.4E-14 86.5 8.0 54 69-134 2-55 (76)
90 PHA02125 thioredoxin-like prot 98.9 2.8E-09 6E-14 85.4 7.8 50 69-133 2-51 (75)
91 PLN02919 haloacid dehalogenase 98.9 5.5E-09 1.2E-13 122.4 12.2 92 64-174 419-536 (1057)
92 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 5.7E-09 1.2E-13 91.3 9.2 95 50-168 7-120 (123)
93 TIGR01626 ytfJ_HI0045 conserve 98.9 1E-08 2.2E-13 96.1 10.5 83 63-168 57-174 (184)
94 cd02973 TRX_GRX_like Thioredox 98.8 7.6E-09 1.6E-13 80.7 6.9 56 69-134 3-58 (67)
95 cd03012 TlpA_like_DipZ_like Tl 98.8 1.3E-08 2.9E-13 89.7 8.6 70 64-139 22-117 (126)
96 cd02955 SSP411 TRX domain, SSP 98.8 1.7E-08 3.7E-13 88.9 9.1 78 53-141 5-94 (124)
97 COG4232 Thiol:disulfide interc 98.8 4.4E-08 9.6E-13 104.6 12.3 107 49-173 457-567 (569)
98 cd02967 mauD Methylamine utili 98.8 1.2E-08 2.5E-13 88.0 6.6 61 65-132 21-82 (114)
99 PTZ00056 glutathione peroxidas 98.8 2.1E-08 4.5E-13 95.9 8.9 64 62-132 36-108 (199)
100 cd02958 UAS UAS family; UAS is 98.8 3.8E-08 8.3E-13 85.3 9.7 102 55-174 5-111 (114)
101 cd02966 TlpA_like_family TlpA- 98.8 2.5E-08 5.3E-13 84.7 8.2 68 65-138 19-108 (116)
102 PLN02399 phospholipid hydroper 98.7 3.5E-08 7.7E-13 96.3 9.5 117 50-175 86-235 (236)
103 PF08534 Redoxin: Redoxin; In 98.7 3.2E-08 6.9E-13 89.4 8.1 82 51-140 16-127 (146)
104 KOG0913 Thiol-disulfide isomer 98.7 5.6E-09 1.2E-13 98.9 1.8 102 46-173 24-125 (248)
105 TIGR02661 MauD methylamine deh 98.7 1.3E-07 2.9E-12 89.6 11.0 70 64-140 73-159 (189)
106 KOG0914 Thioredoxin-like prote 98.6 1E-07 2.3E-12 89.1 8.4 88 46-141 124-218 (265)
107 PLN02412 probable glutathione 98.6 1.2E-07 2.5E-12 88.2 8.7 107 62-175 26-165 (167)
108 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2.1E-07 4.5E-12 77.2 9.1 65 60-134 7-71 (89)
109 PRK11509 hydrogenase-1 operon 98.6 3.2E-07 6.9E-12 81.1 10.6 106 48-177 19-127 (132)
110 cd00340 GSH_Peroxidase Glutath 98.6 9.3E-08 2E-12 87.3 7.5 45 62-113 19-63 (152)
111 smart00594 UAS UAS domain. 98.6 3.1E-07 6.7E-12 80.8 9.7 104 53-170 13-121 (122)
112 TIGR02540 gpx7 putative glutat 98.6 2.9E-07 6.3E-12 84.1 9.7 46 61-112 18-63 (153)
113 PF13899 Thioredoxin_7: Thiore 98.5 1.8E-07 3.8E-12 76.2 6.1 63 65-137 17-82 (82)
114 PTZ00256 glutathione peroxidas 98.4 1.1E-06 2.4E-11 82.8 9.5 56 50-113 27-83 (183)
115 cd02969 PRX_like1 Peroxiredoxi 98.4 2E-06 4.3E-11 80.0 10.6 102 64-175 24-153 (171)
116 cd02960 AGR Anterior Gradient 98.3 1.2E-06 2.7E-11 77.3 6.9 72 55-137 11-88 (130)
117 COG0526 TrxA Thiol-disulfide i 98.3 3.4E-06 7.4E-11 70.8 9.0 66 65-138 32-99 (127)
118 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 4.1E-06 9E-11 72.9 8.4 68 64-137 24-117 (124)
119 KOG2501 Thioredoxin, nucleored 98.2 2.2E-06 4.8E-11 77.3 6.5 69 65-137 33-124 (157)
120 cd03017 PRX_BCP Peroxiredoxin 98.2 3.5E-06 7.6E-11 75.2 7.8 70 64-139 22-121 (140)
121 PRK00522 tpx lipid hydroperoxi 98.2 5E-06 1.1E-10 77.2 8.8 44 62-113 41-85 (167)
122 KOG2603 Oligosaccharyltransfer 98.2 1.8E-05 3.8E-10 78.4 12.5 126 43-176 37-168 (331)
123 TIGR03137 AhpC peroxiredoxin. 98.2 5.9E-06 1.3E-10 78.2 9.0 93 64-171 30-153 (187)
124 PF13728 TraF: F plasmid trans 98.2 9.2E-06 2E-10 78.5 9.6 94 57-170 112-214 (215)
125 cd01659 TRX_superfamily Thiore 98.1 7.5E-06 1.6E-10 60.8 7.0 60 69-138 1-63 (69)
126 cd03015 PRX_Typ2cys Peroxiredo 98.1 1.3E-05 2.8E-10 74.8 9.3 95 64-173 28-156 (173)
127 PRK10382 alkyl hydroperoxide r 98.1 1.7E-05 3.7E-10 75.0 9.6 96 62-172 28-154 (187)
128 PRK13190 putative peroxiredoxi 98.1 1.4E-05 3.1E-10 76.5 9.0 96 64-174 26-154 (202)
129 TIGR02196 GlrX_YruB Glutaredox 98.1 1.2E-05 2.6E-10 62.9 6.9 54 69-135 2-57 (74)
130 cd02970 PRX_like2 Peroxiredoxi 98.1 1.9E-05 4.1E-10 71.0 8.9 42 66-113 24-66 (149)
131 PRK10606 btuE putative glutath 98.1 6.4E-06 1.4E-10 77.5 5.9 74 49-132 11-94 (183)
132 COG2143 Thioredoxin-related pr 98.0 7.4E-05 1.6E-09 66.8 11.9 88 64-170 41-145 (182)
133 PRK15000 peroxidase; Provision 98.0 3.3E-05 7.1E-10 73.9 9.2 94 64-172 33-160 (200)
134 PRK09437 bcp thioredoxin-depen 98.0 3.1E-05 6.6E-10 70.6 8.5 45 63-113 28-73 (154)
135 PF01216 Calsequestrin: Calseq 97.9 5.5E-05 1.2E-09 76.0 9.6 112 43-178 31-148 (383)
136 cd03018 PRX_AhpE_like Peroxire 97.9 4.3E-05 9.4E-10 68.9 8.0 42 66-113 29-71 (149)
137 TIGR02739 TraF type-F conjugat 97.9 6.5E-05 1.4E-09 74.1 9.7 96 59-174 144-248 (256)
138 cd02991 UAS_ETEA UAS family, E 97.8 8.3E-05 1.8E-09 64.8 8.4 103 55-174 5-113 (116)
139 cd03014 PRX_Atyp2cys Peroxired 97.8 4.8E-05 1E-09 68.3 6.5 59 64-130 25-85 (143)
140 PRK13599 putative peroxiredoxi 97.8 8.8E-05 1.9E-09 71.8 8.5 94 64-172 27-154 (215)
141 TIGR02200 GlrX_actino Glutared 97.8 4.8E-05 1E-09 60.3 5.6 54 69-138 2-60 (77)
142 cd02971 PRX_family Peroxiredox 97.8 6.7E-05 1.5E-09 66.8 6.9 43 64-112 21-64 (140)
143 PTZ00137 2-Cys peroxiredoxin; 97.7 0.00014 3E-09 72.2 9.5 94 64-172 97-223 (261)
144 PRK13703 conjugal pilus assemb 97.7 0.00014 3E-09 71.5 8.9 94 60-173 138-240 (248)
145 cd03016 PRX_1cys Peroxiredoxin 97.7 0.00018 3.8E-09 69.0 9.1 93 66-173 26-153 (203)
146 PF13192 Thioredoxin_3: Thiore 97.7 0.00021 4.5E-09 57.3 7.9 73 70-171 3-76 (76)
147 PF07912 ERp29_N: ERp29, N-ter 97.7 0.00086 1.9E-08 58.0 12.0 113 47-179 5-124 (126)
148 PRK13191 putative peroxiredoxi 97.6 0.00023 4.9E-09 68.9 8.7 94 64-172 32-159 (215)
149 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00013 2.7E-09 59.0 5.4 57 69-134 1-60 (84)
150 PTZ00253 tryparedoxin peroxida 97.6 0.00032 7E-09 67.0 9.0 94 64-172 35-162 (199)
151 PRK13189 peroxiredoxin; Provis 97.6 0.0003 6.5E-09 68.4 8.9 95 64-173 34-162 (222)
152 PF06110 DUF953: Eukaryotic pr 97.5 0.0005 1.1E-08 59.9 8.7 78 54-138 6-99 (119)
153 PF14595 Thioredoxin_9: Thiore 97.5 0.00034 7.3E-09 62.1 7.4 69 59-137 35-106 (129)
154 cd02968 SCO SCO (an acronym fo 97.5 0.0002 4.2E-09 64.0 5.9 47 64-113 21-68 (142)
155 PRK11200 grxA glutaredoxin 1; 97.4 0.00066 1.4E-08 55.4 7.8 78 69-175 3-84 (85)
156 PF02114 Phosducin: Phosducin; 97.4 0.0004 8.6E-09 69.2 7.5 110 47-173 126-237 (265)
157 PRK10877 protein disulfide iso 97.4 0.00097 2.1E-08 65.3 9.6 85 64-173 106-230 (232)
158 PF03190 Thioredox_DsbH: Prote 97.3 0.0011 2.4E-08 60.9 8.4 79 50-139 24-114 (163)
159 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0014 3E-08 58.9 9.1 30 65-94 5-34 (154)
160 KOG3425 Uncharacterized conser 97.2 0.00073 1.6E-08 57.9 6.2 76 54-136 13-103 (128)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.00072 1.6E-08 64.4 6.0 25 65-89 77-101 (197)
162 PF13848 Thioredoxin_6: Thiore 97.1 0.0053 1.2E-07 57.0 10.7 107 45-172 76-184 (184)
163 cd02981 PDI_b_family Protein D 96.9 0.01 2.2E-07 49.3 9.7 88 55-172 9-96 (97)
164 TIGR02183 GRXA Glutaredoxin, G 96.7 0.0054 1.2E-07 50.3 6.9 58 69-134 2-63 (86)
165 TIGR03143 AhpF_homolog putativ 96.7 0.0055 1.2E-07 67.8 9.2 78 66-170 476-554 (555)
166 PF13462 Thioredoxin_4: Thiore 96.7 0.011 2.4E-07 53.7 9.5 43 65-112 12-54 (162)
167 PRK11657 dsbG disulfide isomer 96.6 0.013 2.8E-07 58.1 9.6 84 65-171 117-249 (251)
168 PRK15317 alkyl hydroperoxide r 96.4 0.013 2.7E-07 64.3 9.5 83 66-175 117-199 (517)
169 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.0085 1.8E-07 46.3 5.9 51 69-134 2-56 (73)
170 PF00462 Glutaredoxin: Glutare 96.4 0.011 2.4E-07 44.6 6.3 53 69-134 1-55 (60)
171 KOG3414 Component of the U4/U6 96.4 0.019 4.2E-07 49.7 8.0 79 52-139 10-88 (142)
172 cd03419 GRX_GRXh_1_2_like Glut 96.3 0.004 8.6E-08 50.0 3.4 55 69-134 2-59 (82)
173 cd02972 DsbA_family DsbA famil 96.2 0.017 3.8E-07 46.9 7.1 60 69-135 1-90 (98)
174 KOG0911 Glutaredoxin-related p 96.1 0.0047 1E-07 58.9 3.6 65 64-138 16-80 (227)
175 cd03067 PDI_b_PDIR_N PDIb fami 96.1 0.038 8.2E-07 46.2 8.1 97 53-172 9-110 (112)
176 PF02966 DIM1: Mitosis protein 96.0 0.043 9.3E-07 48.2 8.7 77 52-138 7-84 (133)
177 KOG1672 ATP binding protein [P 95.8 0.014 3.1E-07 54.3 5.1 78 52-141 73-150 (211)
178 cd03072 PDI_b'_ERp44 PDIb' fam 95.7 0.15 3.3E-06 43.9 10.9 103 49-175 2-109 (111)
179 TIGR03140 AhpF alkyl hydropero 95.5 0.066 1.4E-06 58.7 9.6 83 66-175 118-200 (515)
180 cd02066 GRX_family Glutaredoxi 95.4 0.031 6.7E-07 42.8 5.0 53 69-134 2-56 (72)
181 cd02983 P5_C P5 family, C-term 95.2 0.12 2.6E-06 45.9 8.9 109 47-178 3-119 (130)
182 KOG3171 Conserved phosducin-li 95.2 0.053 1.1E-06 51.3 6.7 110 47-173 139-250 (273)
183 PHA03005 sulfhydryl oxidase; P 95.0 0.098 2.1E-06 42.7 6.7 69 315-383 9-78 (96)
184 PF11009 DUF2847: Protein of u 95.0 0.094 2E-06 44.6 6.9 83 52-141 6-91 (105)
185 TIGR02190 GlrX-dom Glutaredoxi 94.8 0.08 1.7E-06 42.4 5.9 54 68-134 9-63 (79)
186 PHA03050 glutaredoxin; Provisi 94.7 0.063 1.4E-06 46.1 5.3 56 69-134 15-75 (108)
187 PRK10329 glutaredoxin-like pro 94.5 0.23 4.9E-06 40.2 7.8 74 69-174 3-77 (81)
188 COG1225 Bcp Peroxiredoxin [Pos 94.4 0.28 6E-06 44.9 9.0 63 60-128 25-107 (157)
189 PF07449 HyaE: Hydrogenase-1 e 94.3 0.14 3E-06 43.8 6.4 83 47-141 10-95 (107)
190 TIGR02189 GlrX-like_plant Glut 94.3 0.13 2.8E-06 43.3 6.2 53 69-134 10-67 (99)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 94.1 0.61 1.3E-05 40.1 10.2 99 50-173 3-110 (111)
192 TIGR02181 GRX_bact Glutaredoxi 94.1 0.051 1.1E-06 43.3 3.3 53 69-134 1-55 (79)
193 PF05768 DUF836: Glutaredoxin- 94.1 0.18 3.9E-06 40.7 6.5 80 69-171 2-81 (81)
194 PF13848 Thioredoxin_6: Thiore 93.7 0.32 7E-06 44.9 8.4 71 83-178 8-79 (184)
195 cd03418 GRX_GRXb_1_3_like Glut 93.4 0.082 1.8E-06 41.5 3.3 53 69-134 2-57 (75)
196 KOG2640 Thioredoxin [Function 93.4 0.051 1.1E-06 54.4 2.4 99 59-180 70-168 (319)
197 cd03029 GRX_hybridPRX5 Glutare 93.4 0.25 5.3E-06 38.6 6.0 53 69-134 3-56 (72)
198 cd03013 PRX5_like Peroxiredoxi 93.2 0.16 3.5E-06 46.4 5.4 60 65-130 29-93 (155)
199 TIGR02194 GlrX_NrdH Glutaredox 93.2 0.22 4.7E-06 39.0 5.4 50 70-134 2-54 (72)
200 cd03069 PDI_b_ERp57 PDIb famil 93.0 1.1 2.4E-05 37.9 9.8 96 53-173 8-103 (104)
201 cd03027 GRX_DEP Glutaredoxin ( 92.3 0.16 3.4E-06 39.9 3.5 53 69-134 3-57 (73)
202 PRK10954 periplasmic protein d 91.3 0.3 6.5E-06 46.8 4.9 30 66-95 38-70 (207)
203 PF00837 T4_deiodinase: Iodoth 91.0 0.95 2.1E-05 44.1 7.9 55 42-96 78-133 (237)
204 cd03066 PDI_b_Calsequestrin_mi 90.6 4 8.8E-05 34.2 10.6 92 52-173 7-100 (102)
205 KOG3170 Conserved phosducin-li 90.5 1.6 3.5E-05 41.2 8.6 107 46-172 91-199 (240)
206 cd03028 GRX_PICOT_like Glutare 90.0 0.4 8.7E-06 39.5 3.8 47 75-134 21-69 (90)
207 cd03019 DsbA_DsbA DsbA family, 89.8 0.48 1E-05 43.6 4.7 31 65-95 15-45 (178)
208 COG0695 GrxC Glutaredoxin and 89.5 0.95 2.1E-05 36.5 5.6 53 69-134 3-59 (80)
209 PF13743 Thioredoxin_5: Thiore 89.5 1.1 2.3E-05 41.9 6.8 26 71-96 2-27 (176)
210 TIGR00365 monothiol glutaredox 89.5 0.53 1.1E-05 39.5 4.2 47 75-134 25-73 (97)
211 PRK10638 glutaredoxin 3; Provi 89.4 0.44 9.5E-06 38.4 3.6 53 69-134 4-58 (83)
212 TIGR03143 AhpF_homolog putativ 89.3 2.1 4.6E-05 47.4 10.1 97 56-174 357-454 (555)
213 PRK10824 glutaredoxin-4; Provi 88.9 0.85 1.8E-05 39.6 5.2 67 56-141 8-81 (115)
214 KOG2792 Putative cytochrome C 88.8 5.7 0.00012 39.1 11.2 51 62-113 136-187 (280)
215 COG1651 DsbG Protein-disulfide 88.6 5.5 0.00012 38.8 11.5 47 48-94 67-113 (244)
216 KOG1752 Glutaredoxin and relat 88.4 1.6 3.4E-05 37.2 6.4 70 55-142 6-79 (104)
217 COG3019 Predicted metal-bindin 88.3 2.4 5.2E-05 37.7 7.5 73 69-174 28-104 (149)
218 COG1999 Uncharacterized protei 82.0 11 0.00025 36.0 9.8 77 50-133 54-135 (207)
219 PRK12759 bifunctional gluaredo 80.3 3.1 6.7E-05 44.3 5.8 53 69-134 4-66 (410)
220 PF02630 SCO1-SenC: SCO1/SenC; 79.6 4.5 9.8E-05 37.6 6.0 71 48-124 37-109 (174)
221 COG0450 AhpC Peroxiredoxin [Po 77.3 11 0.00025 35.5 7.8 44 64-113 32-76 (194)
222 cd03068 PDI_b_ERp72 PDIb famil 77.0 25 0.00053 29.9 9.3 99 52-173 7-107 (107)
223 COG1331 Highly conserved prote 74.6 9.3 0.0002 42.7 7.5 78 51-139 31-120 (667)
224 PTZ00062 glutaredoxin; Provisi 71.9 5.7 0.00012 38.1 4.5 48 74-134 125-174 (204)
225 PF00255 GSHPx: Glutathione pe 70.0 14 0.0003 31.7 6.0 57 49-114 7-63 (108)
226 PF02439 Adeno_E3_CR2: Adenovi 66.0 6.3 0.00014 27.0 2.4 27 482-508 8-36 (38)
227 PF03918 CcmH: Cytochrome C bi 64.0 5.1 0.00011 36.4 2.3 17 432-448 74-90 (148)
228 COG0386 BtuE Glutathione perox 57.9 62 0.0013 29.6 8.0 75 48-132 10-94 (162)
229 cd02990 UAS_FAF1 UAS family, F 56.3 1.4E+02 0.0031 26.6 10.1 94 65-174 21-133 (136)
230 cd03060 GST_N_Omega_like GST_N 56.0 22 0.00048 27.2 4.4 53 70-134 2-54 (71)
231 PF04805 Pox_E10: E10-like pro 54.9 17 0.00037 28.1 3.3 39 345-383 14-53 (70)
232 PRK10144 formate-dependent nit 54.6 25 0.00055 30.9 4.9 18 431-448 73-90 (126)
233 PF09049 SNN_transmemb: Stanni 54.2 14 0.0003 23.7 2.3 28 468-500 3-30 (33)
234 PF12172 DUF35_N: Rubredoxin-l 54.1 2.3 5E-05 28.8 -1.3 16 404-419 19-34 (37)
235 cd03040 GST_N_mPGES2 GST_N fam 51.8 1E+02 0.0022 23.7 7.8 76 69-175 2-77 (77)
236 PF09673 TrbC_Ftype: Type-F co 51.7 57 0.0012 28.0 6.7 45 82-137 36-80 (113)
237 cd02978 KaiB_like KaiB-like fa 51.7 58 0.0013 25.8 6.0 59 68-134 3-61 (72)
238 PF07172 GRP: Glycine rich pro 51.7 18 0.0004 30.2 3.4 17 1-17 1-17 (95)
239 PF08114 PMP1_2: ATPase proteo 49.9 16 0.00036 25.3 2.3 22 488-510 17-38 (43)
240 TIGR03147 cyt_nit_nrfF cytochr 47.2 36 0.00078 30.0 4.7 18 431-448 73-90 (126)
241 cd03031 GRX_GRX_like Glutaredo 46.0 22 0.00047 32.2 3.3 53 69-134 2-66 (147)
242 cd03041 GST_N_2GST_N GST_N fam 45.9 47 0.001 25.9 4.9 52 70-134 3-56 (77)
243 KOG2507 Ubiquitin regulatory p 45.7 1.1E+02 0.0023 32.6 8.5 99 55-172 7-109 (506)
244 COG2761 FrnE Predicted dithiol 45.1 28 0.0006 33.9 4.0 42 118-176 174-215 (225)
245 TIGR02654 circ_KaiB circadian 44.5 79 0.0017 26.0 6.0 61 66-134 3-63 (87)
246 cd03051 GST_N_GTT2_like GST_N 44.1 41 0.00089 25.4 4.3 54 70-134 2-57 (74)
247 PRK09301 circadian clock prote 44.0 76 0.0017 26.9 6.0 62 65-134 5-66 (103)
248 TIGR02742 TrbC_Ftype type-F co 43.1 46 0.001 29.5 4.8 55 117-173 60-114 (130)
249 cd00570 GST_N_family Glutathio 42.4 41 0.00088 24.4 3.9 53 71-134 3-55 (71)
250 PF12768 Rax2: Cortical protei 40.4 32 0.0007 34.6 3.9 40 475-514 225-264 (281)
251 PF01323 DSBA: DSBA-like thior 40.0 35 0.00076 31.4 3.9 39 115-171 154-193 (193)
252 PHA03075 glutaredoxin-like pro 39.1 44 0.00095 28.9 3.8 29 66-94 2-30 (123)
253 PF06053 DUF929: Domain of unk 37.1 25 0.00054 34.8 2.4 31 64-94 57-87 (249)
254 PF15099 PIRT: Phosphoinositid 37.1 17 0.00038 31.7 1.1 28 486-513 83-113 (129)
255 PF13417 GST_N_3: Glutathione 36.4 2E+02 0.0042 22.1 7.5 71 72-175 2-72 (75)
256 cd03024 DsbA_FrnE DsbA family, 36.2 32 0.00069 32.1 3.0 38 116-170 163-200 (201)
257 PF04592 SelP_N: Selenoprotein 35.8 68 0.0015 31.4 5.0 50 60-112 21-70 (238)
258 cd02977 ArsC_family Arsenate R 35.1 33 0.0007 28.7 2.5 20 70-89 2-21 (105)
259 PF15330 SIT: SHP2-interacting 34.8 61 0.0013 27.7 4.1 29 484-512 5-33 (107)
260 COG3531 Predicted protein-disu 32.9 58 0.0013 31.0 3.9 44 118-174 164-209 (212)
261 PF14316 DUF4381: Domain of un 32.6 35 0.00076 30.7 2.5 26 488-513 27-52 (146)
262 PF11980 DUF3481: Domain of un 32.4 45 0.00097 27.1 2.7 24 483-506 22-45 (87)
263 PF06522 B12D: NADH-ubiquinone 31.8 41 0.0009 26.5 2.4 21 478-498 5-25 (73)
264 PF01216 Calsequestrin: Calseq 31.6 3.5E+02 0.0076 28.2 9.5 105 45-176 145-249 (383)
265 cd03035 ArsC_Yffb Arsenate Red 31.4 41 0.00089 28.4 2.5 20 70-89 2-21 (105)
266 KOG1651 Glutathione peroxidase 30.5 81 0.0017 29.2 4.3 58 48-113 19-76 (171)
267 cd03045 GST_N_Delta_Epsilon GS 30.5 69 0.0015 24.3 3.6 54 70-134 2-57 (74)
268 PF15284 PAGK: Phage-encoded v 29.8 69 0.0015 24.4 3.1 30 482-512 7-36 (61)
269 cd03022 DsbA_HCCA_Iso DsbA fam 28.1 61 0.0013 29.8 3.4 18 117-134 156-173 (192)
270 PF14986 DUF4514: Domain of un 27.8 69 0.0015 23.6 2.7 22 480-502 23-44 (61)
271 cd03059 GST_N_SspA GST_N famil 27.2 80 0.0017 23.8 3.4 52 70-133 2-53 (73)
272 PF05984 Cytomega_UL20A: Cytom 25.4 63 0.0014 26.1 2.4 22 1-22 1-22 (100)
273 COG3634 AhpF Alkyl hydroperoxi 24.8 2.8E+02 0.006 29.1 7.4 85 60-171 111-195 (520)
274 cd03036 ArsC_like Arsenate Red 24.6 64 0.0014 27.4 2.6 20 70-89 2-21 (111)
275 KOG0852 Alkyl hydroperoxide re 24.6 93 0.002 29.1 3.7 40 59-98 27-67 (196)
276 smart00575 ZnF_PMZ plant mutat 24.4 39 0.00084 21.3 0.9 15 306-325 7-21 (28)
277 COG3088 CcmH Uncharacterized p 24.1 1.7E+02 0.0038 26.5 5.2 16 433-448 79-94 (153)
278 PF05214 Baculo_p33: Baculovir 23.8 62 0.0013 31.7 2.5 43 316-358 108-163 (250)
279 PRK01655 spxA transcriptional 23.5 80 0.0017 27.8 3.1 21 69-89 2-22 (131)
280 cd03037 GST_N_GRX2 GST_N famil 23.4 2E+02 0.0043 21.6 5.0 19 71-89 3-21 (71)
281 cd03019 DsbA_DsbA DsbA family, 23.4 82 0.0018 28.5 3.3 18 117-134 132-149 (178)
282 PF07010 Endomucin: Endomucin; 22.7 1.1E+02 0.0023 29.8 3.8 38 468-507 179-216 (259)
283 PRK10561 glycerol-3-phosphate 22.5 1E+02 0.0022 30.6 3.9 32 480-511 248-279 (280)
284 COG4594 FecB ABC-type Fe3+-cit 21.4 1.6E+02 0.0036 29.2 4.8 23 1-23 1-23 (310)
285 PRK14749 hypothetical protein; 21.1 1.6E+02 0.0035 19.0 3.1 18 485-503 7-24 (30)
286 PF04134 DUF393: Protein of un 20.9 88 0.0019 26.3 2.7 45 72-127 2-46 (114)
287 PF08693 SKG6: Transmembrane a 20.7 13 0.00028 25.8 -1.9 14 476-489 15-28 (40)
288 KOG4266 Subtilisin kexin isozy 20.3 90 0.0019 34.7 3.1 39 476-514 988-1026(1033)
289 TIGR01617 arsC_related transcr 20.1 86 0.0019 26.8 2.5 20 70-89 2-21 (117)
No 1
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-95 Score=750.08 Aligned_cols=446 Identities=37% Similarity=0.661 Sum_probs=339.7
Q ss_pred cccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH
Q 010178 43 VEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (516)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (516)
...++++.|+.++|+.++.+++ +..+|+||++|||||++|+|+|+++|+.+.+|. +.+.+++|||++++|..+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~----~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWR----PVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhccc----ceeEEEEeeccchhhhhhHh
Confidence 4458999999999999999876 456999999999999999999999999999876 78999999999999999999
Q ss_pred hCCCCccCeEEEecCC-------cccCC-------------------------CCC---CCccccchhh-ccccCCH---
Q 010178 123 KFSVGHYPMLLWGSPS-------KFVAG-------------------------SWE---PNQEKKEIRA-LEDWQTA--- 163 (516)
Q Consensus 123 ~~~I~~~PTl~~f~~g-------~~~~~-------------------------~~~---~~~~~~~v~~-~~G~~~~--- 163 (516)
+|+|++|||++||+++ ....+ +|+ |..+...+.. +.|..+.
T Consensus 111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence 9999999999999775 22111 122 1111111111 1111111
Q ss_pred --------HHHHHH---HHHh----cccCCCCCccccccc----------cCCCCC------------------------
Q 010178 164 --------DGLLTW---INKQ----TSRSYGLDDEKFENE----------QLPSNI------------------------ 194 (516)
Q Consensus 164 --------e~L~~~---i~~~----l~~~~~l~~~~~~~~----------~~~~~~------------------------ 194 (516)
+..+.| |+.. .+....++.+.+... .+-++.
T Consensus 191 vAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 191 VAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred eEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccccCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 111111 1111 111111111111000 000000
Q ss_pred ----------------------CCccchh---hhh--hhhhhhhhHHHHHHH-hhhccchhhHHHHHHHHHHHHHhcCCc
Q 010178 195 ----------------------SDPGQIA---RAV--YDVEEATTTAFDIIL-DHKMIKSETRASLIRFLQVLVAHHPSR 246 (516)
Q Consensus 195 ----------------------~~~~~~~---~~~--~Dle~a~~~a~~~~l-~~~~l~ge~l~aL~~Fl~vl~~~~P~~ 246 (516)
..+..+. ..| .|||+|+.++++..+ ....|+|+++.||++|++++++++|+.
T Consensus 271 ~~~~a~~pt~~p~~~~~~~~~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~~~i~g~~l~aLk~f~~ll~r~~P~~ 350 (606)
T KOG1731|consen 271 DKNEASGPTLHPITATTAAPTIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRTALIRGENLAALKEFMHLLRRYFPGT 350 (606)
T ss_pred CccccCCCCcCcccccccchhhhcchhhcCccceehHhhHHHHHHHHHHHhhcchhhccCchHHHHHHHHHHHHHhCCCC
Confidence 0000000 012 389999998888554 567899999999999999999999996
Q ss_pred cccchhHHHHHhhhhcCCCCccchhhHHHhhccCCCCCCCcCcCCCCCC-CCCceeccCCCCCcCcccccHHHHHHHHhc
Q 010178 247 RCRKGSAKVLVNFDDFSPSHMQSADKQEVVNNNGKGGLGNFPICGKEVP-RGYWIFCRGSKNDTRGFSCGLWVLLHSLSV 325 (516)
Q Consensus 247 ~~r~~~~~lL~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~p-~~~w~~C~gS~~~~Rgy~CglW~lfH~ltv 325 (516)
. ....++..+++ |......... ..+.+.+...+.+|.++| +.+|+||+||+|++||||||||||||+|||
T Consensus 351 ~---~~~~l~~~Ld~-~~~~~~~it~-----~~f~d~~~~~~~~g~p~p~~~~w~gC~GS~P~~RGftCgLWTLFH~lTV 421 (606)
T KOG1731|consen 351 A---DGRRLVNSLDN-SLSARQVITG-----EWFRDVLDDLEACGSPFPKEGTWVGCAGSKPHLRGFTCGLWTLFHALTV 421 (606)
T ss_pred h---hHHHHHHHHhh-hhhhceeecH-----HHHHHHHHHHHHhCCCccccceeEeecCCCCccCCcchHHHHHHHHhhh
Confidence 4 33345555544 3322221111 123455667788999999 459999999999999999999999999999
Q ss_pred cCCCCCC----HHHHHHHHHHhHhccCChHHHHHHHHHHhcCC-CCCCChhHHHHHHHHhhhhhhhhccccccccCCCCC
Q 010178 326 RIDDGES----QFTFTAVCDFIHNFFVCEECRQHFYQMCSSVT-SPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDP 400 (516)
Q Consensus 326 ~~~~~~~----~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~~~-~~~~~~~~~~lWlw~~HN~VN~rl~~~~~~~~~~dp 400 (516)
++.+++. ..++..+.+||++||+|.+||+||++|+.+.. ..|++++|++||||++||+||+||+|+ +||||
T Consensus 422 ~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aHN~VN~RLaGd----~TeDP 497 (606)
T KOG1731|consen 422 EAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAHNEVNARLAGD----STEDP 497 (606)
T ss_pred hhcccccccchhccchhhHHHHHHccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHhhHHHHHhccC----CCCCC
Confidence 9987654 34678888899999999999999999999765 889999999999999999999999997 89999
Q ss_pred CCCCCCCCCCCCChhhhccCCCCCccccCCCCChHHHHHHHHHHhCCCcccccccccccc-CCCccccccccccccccee
Q 010178 401 KFPKIIWPPKQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSLYKDREFLR-NDGIDGALEDLVVSTNAVV 479 (516)
Q Consensus 401 ~~pk~~~P~~~~Cp~C~~~~~~~~~~~~~~~w~~~~V~~fL~~~Y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (516)
+|||+|||++++||+||..+ ++||+|+||+|||+|||...+|.|++.+... +++.....++....+|..+
T Consensus 498 kFPK~QFP~kelCp~Cy~~~---------~ewd~d~vl~FLk~yY~ik~~S~~~l~~~~~~~~~~~k~~~~~k~~~n~~~ 568 (606)
T KOG1731|consen 498 KFPKVQFPPKELCPDCYSSS---------IEWDEDEVLKFLKKYYSIKPVSRYALPGESRSKEEEGKKLEAQKRPTNAFV 568 (606)
T ss_pred CCCcccCCChhhChhhhcCC---------CCcCHHHHHHHHHHHcCCCcccccccccccccccccccchhhhccCccccc
Confidence 99999999999999999874 3799999999999999999999999999874 4444446778888999999
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCCC
Q 010178 480 VPVGAALAIALASCAFGALACYWRSQQKNRKPRRSW 515 (516)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (516)
||.|++.+|+.|+|+||+|||+||+|||.|||.++.
T Consensus 569 v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 604 (606)
T KOG1731|consen 569 VPAGAALALAAASCAFGALACYQRTQKKNRKYQYNP 604 (606)
T ss_pred ccccchhhhhhhhhhhhhccccccChhhhhcccCCC
Confidence 999999999999999999999999999999998864
No 2
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=99.95 E-value=2e-29 Score=212.00 Aligned_cols=92 Identities=41% Similarity=0.819 Sum_probs=84.8
Q ss_pred ccHHHHHHHHhccCCCCCC---HHHHHHHHHHhHhccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhccc
Q 010178 314 CGLWVLLHSLSVRIDDGES---QFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMK 390 (516)
Q Consensus 314 CglW~lfH~ltv~~~~~~~---~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~ 390 (516)
||+|+|||+||+++|+.|+ ..++.+|.+++.+||||++||+||.+++.+.++.++|++++++|||++||.||+||+|
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999877 4578888899999999999999999999998889999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCC
Q 010178 391 LEASLKTGDPKFPKIIWPP 409 (516)
Q Consensus 391 ~~~~~~~~dp~~pk~~~P~ 409 (516)
+.+ ++||+| |.|||+
T Consensus 81 ~~~---~~~~~~-~~~~~~ 95 (95)
T PF04777_consen 81 PIF---CDDPKF-KEQWPT 95 (95)
T ss_dssp STT---TSGTTH-HHHHT-
T ss_pred CCC---CCcHHH-HhHcCC
Confidence 843 789999 999996
No 3
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-22 Score=177.92 Aligned_cols=89 Identities=28% Similarity=0.522 Sum_probs=82.7
Q ss_pred cHHHHHHHHhccCCCCCCHHHHHHHHHHhHh---ccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhcccc
Q 010178 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHN---FFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKL 391 (516)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~~---ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~~ 391 (516)
+.|+|||+|+++||+.|+.+....|+.|+.. ||||.+|++||++.+.++++++.||+++..|||.+||.||++|+|.
T Consensus 76 stWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLgKp 155 (177)
T KOG3355|consen 76 STWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLGKP 155 (177)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 4599999999999999999999999999984 6999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 010178 392 EASLKTGDPKFP 403 (516)
Q Consensus 392 ~~~~~~~dp~~p 403 (516)
.|+|.+.|.++-
T Consensus 156 ~fdC~~v~erw~ 167 (177)
T KOG3355|consen 156 KFDCRTVDERWR 167 (177)
T ss_pred CCchhHHHHHHh
Confidence 888887766543
No 4
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-20 Score=167.09 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=80.3
Q ss_pred cHHHHHHHHhccCCCCCCHHHHHHHHHHhHh---ccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhcccc
Q 010178 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHN---FFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKL 391 (516)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~~---ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~~ 391 (516)
+.|+|||+|+++||+.|+.+....|+.|+.. +|||-||+.||++.+...+++|+||+++..|+|++||.||+||+++
T Consensus 85 ssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~CevHN~VNekL~Kp 164 (181)
T COG5054 85 SSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKP 164 (181)
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 3699999999999999999999999999985 5999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCC
Q 010178 392 EASLKTGDPK 401 (516)
Q Consensus 392 ~~~~~~~dp~ 401 (516)
.++|.+-+.+
T Consensus 165 ~~dC~~~~e~ 174 (181)
T COG5054 165 KFDCDTWNER 174 (181)
T ss_pred CcccchhHHH
Confidence 8888765443
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.82 E-value=9.1e-20 Score=157.93 Aligned_cols=105 Identities=14% Similarity=0.260 Sum_probs=88.6
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHH-
Q 010178 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC- 121 (516)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~- 121 (516)
....|++|++++|++.+. ...++++||+|||+||+||+.++|.|+++|+.++ +.+.|++|||+ ++.++|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~v~~~~Vd~d--~~~~l~~ 77 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQVLFVAINCW--WPQGKCR 77 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEECC--CChHHHH
Confidence 356799999999998732 2235889999999999999999999999999986 45899999994 677899
Q ss_pred HhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 122 DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 122 ~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++|+|++|||+++|++|+ ....|.|.++++.|+.|+
T Consensus 78 ~~~~I~~~PTl~lf~~g~-------------~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 78 KQKHFFYFPVIHLYYRSR-------------GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HhcCCcccCEEEEEECCc-------------cceEEeCCCCHHHHHhhC
Confidence 589999999999998763 235689999999998873
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=3.7e-19 Score=151.07 Aligned_cols=99 Identities=22% Similarity=0.455 Sum_probs=87.2
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.+++|+.++|+..+.+. ++++|+|||+||++|+++.|.|+++++.++ +.+.|+.|||+ +++.+|++|+|
T Consensus 2 ~~~~l~~~~f~~~v~~~--~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~~~~~vd~~--~~~~~~~~~~v 70 (101)
T cd03003 2 EIVTLDRGDFDAAVNSG--EIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVIRIGAVNCG--DDRMLCRSQGV 70 (101)
T ss_pred CeEEcCHhhHHHHhcCC--CeEEEEEECCCChHHHHhHHHHHHHHHHhc-------CceEEEEEeCC--ccHHHHHHcCC
Confidence 57889999999988653 789999999999999999999999999986 45899999995 57899999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~ 169 (516)
++|||+++|++|+. +..|.|.++.+.|.+|
T Consensus 71 ~~~Pt~~~~~~g~~-------------~~~~~G~~~~~~l~~f 100 (101)
T cd03003 71 NSYPSLYVFPSGMN-------------PEKYYGDRSKESLVKF 100 (101)
T ss_pred CccCEEEEEcCCCC-------------cccCCCCCCHHHHHhh
Confidence 99999999988742 3568899999999876
No 7
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.78 E-value=1.4e-18 Score=148.13 Aligned_cols=102 Identities=25% Similarity=0.592 Sum_probs=87.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.+++++.++|++.+.+. +++++|+|||+||++|+.+.|.|+++++++. +.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~i 71 (104)
T cd03004 2 SVITLTPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSVDCQ--KYESLCQQANI 71 (104)
T ss_pred cceEcCHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEECC--chHHHHHHcCC
Confidence 47789999999988775 4689999999999999999999999999985 45899999995 57899999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCC-HHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQT-ADGLLTWI 170 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~-~e~L~~~i 170 (516)
+++||+++|++|. ..+..|.|..+ .++|.+||
T Consensus 72 ~~~Pt~~~~~~g~------------~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 72 RAYPTIRLYPGNA------------SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CcccEEEEEcCCC------------CCceEccCCCCCHHHHHhhC
Confidence 9999999998761 23456888886 99998875
No 8
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=2.7e-18 Score=147.46 Aligned_cols=107 Identities=33% Similarity=0.672 Sum_probs=91.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
+++++.++|++.+.+. +++++|.|||+||++|+++.|.|+++++.+. +.+.++.+||+.+++.++|++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~~~~~~~~~~~~~~i~ 73 (109)
T cd03002 2 VYELTPKNFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDCDEDKNKPLCGKYGVQ 73 (109)
T ss_pred eEEcchhhHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEecCccccHHHHHHcCCC
Confidence 6789999999999875 5789999999999999999999999999986 3588999999766689999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++||+++|++|+... ......|.|.++.++|.+||
T Consensus 74 ~~Pt~~~~~~~~~~~--------~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 74 GFPTLKVFRPPKKAS--------KHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred cCCEEEEEeCCCccc--------ccccccccCccCHHHHHHHh
Confidence 999999998874211 02335689999999999997
No 9
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.1e-19 Score=184.34 Aligned_cols=114 Identities=25% Similarity=0.552 Sum_probs=101.8
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHh
Q 010178 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (516)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (516)
....|..|+.++|+..+..+ ..+||+|||||||||++++|+|+++|..+++.+ ..+.+++|||+ ++.++|.+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~--~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~----s~i~LakVDat--~~~~~~~~ 94 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGH--EFVLVEFYAPWCGHCKALAPEYEKAATELKEEG----SPVKLAKVDAT--EESDLASK 94 (493)
T ss_pred cccceEEEecccHHHHhccC--ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC----CCceeEEeecc--hhhhhHhh
Confidence 46679999999999999886 788999999999999999999999999998754 46999999996 45999999
Q ss_pred CCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 124 ~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
|+|+||||+.+|++|.. ...|.|+|+++.|+.|+.++.++..
T Consensus 95 y~v~gyPTlkiFrnG~~-------------~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRS-------------AQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred hcCCCCCeEEEEecCCc-------------ceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999999999843 2569999999999999999988654
No 10
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=3.2e-18 Score=144.75 Aligned_cols=103 Identities=30% Similarity=0.691 Sum_probs=92.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
|..+++++|++.+.+ .+++++|.||++||++|+.+.|.|+++++.+.+ .+.++.|||+ ++..+|++|+|.
T Consensus 1 v~~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-------~v~~~~vd~~--~~~~l~~~~~v~ 70 (103)
T PF00085_consen 1 VIVLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-------NVKFAKVDCD--ENKELCKKYGVK 70 (103)
T ss_dssp SEEESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-------TSEEEEEETT--TSHHHHHHTTCS
T ss_pred CEECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceeccccccccc-------ccccchhhhh--ccchhhhccCCC
Confidence 567899999999988 358899999999999999999999999999863 5999999994 689999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
++||+++|.+|+ ....+.|.++.+.|.+||+++
T Consensus 71 ~~Pt~~~~~~g~-------------~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 71 SVPTIIFFKNGK-------------EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSSEEEEEETTE-------------EEEEEESSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCc-------------EEEEEECCCCHHHHHHHHHcC
Confidence 999999999874 335789999999999999875
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=2.8e-18 Score=147.52 Aligned_cols=107 Identities=22% Similarity=0.521 Sum_probs=88.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.++++++++|++.+.. +++++|.|||+||++|+++.|.|+++++.+++... ..+.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~-~~~~~~~~~vd~d--~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP-DAGKVVWGKVDCD--KESDIADRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC-CCCcEEEEEEECC--CCHHHHHhCCC
Confidence 4788999999998855 47899999999999999999999999998753211 0135899999995 57899999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
+++||+++|++|+.. ...|.|.++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~------------~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMM------------KREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCc------------ceecCCCCCHHHHHhhC
Confidence 999999999887521 25688999999999885
No 12
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-18 Score=152.79 Aligned_cols=106 Identities=18% Similarity=0.353 Sum_probs=94.4
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.+..++..+|++.+.++ +.||+|+|||+|||||+.+.|.+++++.+|. +.+.++.||. |++.+++.+|+|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-------g~~k~~kvdt--D~~~ela~~Y~I 113 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYA-------GKFKLYKVDT--DEHPELAEDYEI 113 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhc-------CeEEEEEEcc--ccccchHhhcce
Confidence 45677889999999886 4899999999999999999999999999996 6799999996 678999999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
.++||+++|++|+ ....+.|..+.+.|.++|++.++
T Consensus 114 ~avPtvlvfknGe-------------~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 114 SAVPTVLVFKNGE-------------KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeEEEEEECCE-------------EeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999884 34567899999999999998764
No 13
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=1e-17 Score=161.77 Aligned_cols=110 Identities=24% Similarity=0.471 Sum_probs=94.1
Q ss_pred cCcceecCcccHHHHHhcC---CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHH
Q 010178 45 VDHAVELNATNFDAVLRDT---PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC 121 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~---~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~ 121 (516)
.+.++++++++|++.+... .+++++|+|||+||++|+++.|.|++++++++ +.+.++.+||+ ++.+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~v~~~~VD~~--~~~~l~ 99 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQVNVADLDAT--RALNLA 99 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEecCc--ccHHHH
Confidence 4568999999999988653 24789999999999999999999999999986 45899999985 678999
Q ss_pred HhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 122 DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 122 ~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
++|+|++|||+++|++|+. +..+.|.++.++|.+|+.+....
T Consensus 100 ~~~~I~~~PTl~~f~~G~~-------------v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 100 KRFAIKGYPTLLLFDKGKM-------------YQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred HHcCCCcCCEEEEEECCEE-------------EEeeCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987742 23456789999999999988753
No 14
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.74 E-value=1.2e-17 Score=141.68 Aligned_cols=100 Identities=28% Similarity=0.573 Sum_probs=85.4
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.|++++.++|++.+.+ . +||+|||+||++|+.+.|.|+++++.+.+ ..+.++.|||+ +++.++++|+|
T Consensus 2 ~v~~l~~~~f~~~~~~---~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~~--~~~~~~~~~~i 69 (101)
T cd02994 2 NVVELTDSNWTLVLEG---E-WMIEFYAPWCPACQQLQPEWEEFADWSDD------LGINVAKVDVT--QEPGLSGRFFV 69 (101)
T ss_pred ceEEcChhhHHHHhCC---C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc------CCeEEEEEEcc--CCHhHHHHcCC
Confidence 4788999999987743 3 68999999999999999999999998753 34899999994 57889999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+++||+++|++|+. ..+.|.++.++|.+||++
T Consensus 70 ~~~Pt~~~~~~g~~--------------~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 70 TALPTIYHAKDGVF--------------RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred cccCEEEEeCCCCE--------------EEecCCCCHHHHHHHHhC
Confidence 99999999987632 357899999999999864
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.74 E-value=1.4e-17 Score=145.30 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=91.7
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChh--hh--hhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHH
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPA--CR--NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNL 120 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~--C~--~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l 120 (516)
.+.+..||++||++.+.+++ .++||.|||+||++ |+ .+.|.+.++|.++-.. +.+.|++||+ ++++++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~-~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-----~~v~~~kVD~--d~~~~L 79 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYD-VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-----KGIGFGLVDS--KKDAKV 79 (120)
T ss_pred CcceeeCChhhHHHHHHhCC-ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-----CCCEEEEEeC--CCCHHH
Confidence 45788999999999998874 68899999999977 99 8889999988887211 4599999998 468999
Q ss_pred HHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 121 ~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
+++|||+++||+++|++|+ .+. |.|.++.+.|++||.+.+
T Consensus 80 a~~~~I~~iPTl~lfk~G~-------------~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVFKDDE-------------VIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHcCCccccEEEEEECCE-------------EEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999999874 234 889999999999998653
No 16
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=1.2e-17 Score=144.21 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=83.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEec--CCCh---hhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---cccH
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFA--NWCP---ACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---KINT 118 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA--~WC~---~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---d~~~ 118 (516)
.++.|+..||++.|.+. +.+||+||| |||+ ||++++|+|.+.+. .|.++.|||++ .++.
T Consensus 2 g~v~L~~~nF~~~v~~~--~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----------~v~lakVd~~d~~~~~~~ 68 (116)
T cd03007 2 GCVDLDTVTFYKVIPKF--KYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----------DLLVAEVGIKDYGEKLNM 68 (116)
T ss_pred CeeECChhhHHHHHhcC--CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----------ceEEEEEecccccchhhH
Confidence 36889999999999775 679999999 8898 77777776665443 37899999953 3568
Q ss_pred HHHHhCCCC--ccCeEEEecCCcccCCCCCCCccccchhhcccc-CCHHHHHHHHHHh
Q 010178 119 NLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINKQ 173 (516)
Q Consensus 119 ~l~~~~~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~e~L~~~i~~~ 173 (516)
+||++|+|+ +||||++|++|.. .....|.|. |++++|++||+++
T Consensus 69 ~L~~~y~I~~~gyPTl~lF~~g~~-----------~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 69 ELGERYKLDKESYPVIYLFHGGDF-----------ENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHHHhCCCcCCCCEEEEEeCCCc-----------CCCccCCCCcccHHHHHHHHHhc
Confidence 999999999 9999999998732 123568997 9999999999875
No 17
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.73 E-value=1.6e-17 Score=141.00 Aligned_cols=94 Identities=19% Similarity=0.409 Sum_probs=79.7
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 54 ~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
+++.+.+.+.++++++|+|||+||++|+.++|.|+++++.+. .+.++.||++ ++++.++++|+|+++||++
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~~-~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEES-SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEECC-CCCHHHHHhcCCeecCEEE
Confidence 345566777788999999999999999999999999999985 2678889974 2578999999999999999
Q ss_pred EecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
+|++| . +..+.|.++.+.|.+||
T Consensus 78 lf~~g-~-------------~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 78 LFNST-P-------------RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEcCC-c-------------eeEecCCCCHHHHHhhC
Confidence 99876 2 24588999999999885
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.72 E-value=4e-17 Score=137.02 Aligned_cols=96 Identities=21% Similarity=0.463 Sum_probs=82.7
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 54 ~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
++|++.+.+++++++||+|||+||++|+.+.|.++++++.+. +.+.++.|||+ ++..++++|+|.++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~~--~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQFVLAKVNCD--AQPQIAQQFGVQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------CcEEEEEEecc--CCHHHHHHcCCCCCCEEE
Confidence 368888876667899999999999999999999999999986 35889999984 688999999999999999
Q ss_pred EecCCcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
+|++|+. +..+.|..+.+.|.+||+
T Consensus 72 ~~~~g~~-------------~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 72 LFAAGQP-------------VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeCCEE-------------eeeecCCCCHHHHHHHhC
Confidence 9987743 345788899999998873
No 19
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=3.6e-17 Score=138.50 Aligned_cols=101 Identities=31% Similarity=0.661 Sum_probs=86.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
++.+++++|+..+.+. +++|+|||+||++|+.++|.++++++.+.+.. ..+.++.|||+ .+..+|++|+|.
T Consensus 2 ~~~l~~~~f~~~~~~~---~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~v~ 72 (102)
T cd03005 2 VLELTEDNFDHHIAEG---NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNEN----PSVKIAKVDCT--QHRELCSEFQVR 72 (102)
T ss_pred eeECCHHHHHHHhhcC---CEEEEEECCCCHHHHHhCHHHHHHHHHHhccC----CcEEEEEEECC--CChhhHhhcCCC
Confidence 5788999999999653 48999999999999999999999999997422 35899999994 578999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++||+++|++|+ .+..+.|.++.++|.+||
T Consensus 73 ~~Pt~~~~~~g~-------------~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGE-------------KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCC-------------eeeEeeCCCCHHHHHhhC
Confidence 999999998773 235688999999998875
No 20
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.71 E-value=8.4e-17 Score=139.97 Aligned_cols=88 Identities=34% Similarity=0.689 Sum_probs=78.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
++++++.++|++.+.+.+ ++++|+|||+||++|+.+.|.|+++++.+++.. +.+.++.+||+.+.+..+|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~----~~v~~~~vd~~~~~~~~~~~~~~i 76 (114)
T cd02992 2 PVIVLDAASFNSALLGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR----PVVRVAAVDCADEENVALCRDFGV 76 (114)
T ss_pred CeEECCHHhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC----CceEEEEEeccchhhHHHHHhCCC
Confidence 578999999999998764 799999999999999999999999999986432 469999999976778899999999
Q ss_pred CccCeEEEecCCc
Q 010178 127 GHYPMLLWGSPSK 139 (516)
Q Consensus 127 ~~~PTl~~f~~g~ 139 (516)
+++||+++|++|.
T Consensus 77 ~~~Pt~~lf~~~~ 89 (114)
T cd02992 77 TGYPTLRYFPPFS 89 (114)
T ss_pred CCCCEEEEECCCC
Confidence 9999999998875
No 21
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=1.1e-16 Score=172.67 Aligned_cols=112 Identities=27% Similarity=0.618 Sum_probs=97.2
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...+..++.++|+..+.+. +.++|+|||+||++|+++.|.|+++++.+.+.+ +.+.++.|||+ ++.++|++|
T Consensus 31 ~~~v~~l~~~~f~~~i~~~--~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~----~~i~~~~vd~~--~~~~l~~~~ 102 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITEN--EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK----SEIVLASVDAT--EEMELAQEF 102 (477)
T ss_pred CCCcEEcchhhHHHHHhcC--CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC----CcEEEEEEECC--CCHHHHHhc
Confidence 3568999999999998764 679999999999999999999999999886433 46999999995 678999999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
+|++|||+++|.+|+ .+ .|.|.++.+.|.+|+.+.++..+
T Consensus 103 ~i~~~Pt~~~~~~g~-------------~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 103 GVRGYPTIKFFNKGN-------------PV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCCcccEEEEEECCc-------------eE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 999999999998763 12 68899999999999999987655
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.71 E-value=9.2e-17 Score=136.23 Aligned_cols=101 Identities=27% Similarity=0.540 Sum_probs=87.7
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
+.++++++|++.+.+. +++++|.|||+||++|+++.|.|.++++.+. +.+.++.+|| +++.+++++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~id~--~~~~~~~~~~~i~ 71 (103)
T cd03001 2 VVELTDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAVDA--DVHQSLAQQYGVR 71 (103)
T ss_pred eEEcCHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEEEC--cchHHHHHHCCCC
Confidence 6788999999988775 4678999999999999999999999999986 4589999998 4688999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++||+++|++|+. ....|.|.++.++|.+|+
T Consensus 72 ~~P~~~~~~~~~~------------~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 72 GFPTIKVFGAGKN------------SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ccCEEEEECCCCc------------ceeecCCCCCHHHHHHHh
Confidence 9999999987721 235688999999999986
No 23
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.70 E-value=9.2e-17 Score=138.49 Aligned_cols=105 Identities=17% Similarity=0.434 Sum_probs=86.1
Q ss_pred cceecCcccHHHHHhc-CCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH-hC
Q 010178 47 HAVELNATNFDAVLRD-TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD-KF 124 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~-~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~-~~ 124 (516)
.|++++.++|+..+.. ..++++||.|||+||++|+++.|.|+++++.+++ ..+.++.|||+. ++..+|. .|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~------~~~~~~~vd~d~-~~~~~~~~~~ 74 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG------SNVKVAKFNADG-EQREFAKEEL 74 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEECCc-cchhhHHhhc
Confidence 4788999999998753 3458899999999999999999999999999973 248999999963 2567886 49
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhcccc-CCHHHHHHHH
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWI 170 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~e~L~~~i 170 (516)
+|+++||+++|++|. .....|.|. ++.++|+.||
T Consensus 75 ~v~~~Pti~~f~~~~------------~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 75 QLKSFPTILFFPKNS------------RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCcCCEEEEEcCCC------------CCceeccCCCCCHHHHHhhC
Confidence 999999999998752 123568884 8999999885
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.70 E-value=6.4e-17 Score=139.98 Aligned_cols=102 Identities=12% Similarity=0.244 Sum_probs=85.2
Q ss_pred ecCcccHHHHH-hcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCc
Q 010178 50 ELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (516)
Q Consensus 50 ~L~~~~f~~~l-~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~ 128 (516)
.++.++|++.+ ....+++++|+|||+||++|+.+.|.++++++++.+ ..+.++.|||+ .++.++++|+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~d--~~~~l~~~~~V~~ 79 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNAG--HERRLARKLGAHS 79 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEecc--ccHHHHHHcCCcc
Confidence 46778887644 334568999999999999999999999999999963 24889999984 5788999999999
Q ss_pred cCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+||+++|++|+. +..+.|..+.+.|.+||++
T Consensus 80 ~Pt~~i~~~g~~-------------~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 80 VPAIVGIINGQV-------------TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEEEEEECCEE-------------EEEecCCCCHHHHHHHHhc
Confidence 999999987743 3456788999999999875
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.69 E-value=2e-16 Score=136.04 Aligned_cols=107 Identities=18% Similarity=0.392 Sum_probs=91.7
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
++.++++++++|++.+.+. +++++|+||++||++|+.+.|.++++++.+. +.+.++.+||+ .+..++++|
T Consensus 2 ~~~v~~~~~~~~~~~v~~~-~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~~--~~~~~~~~~ 71 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNID--QNPGTAPKY 71 (109)
T ss_pred CCcceeeChhhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEECC--CChhHHHhC
Confidence 4668899999999877653 5789999999999999999999999999986 35899999984 578899999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
+|+++||+++|++|+. +..+.|..+.+.|.++|.+++
T Consensus 72 ~v~~~Pt~~~~~~G~~-------------~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLFKNGEV-------------AATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEEeCCeE-------------EEEecCCCCHHHHHHHHHHhc
Confidence 9999999999988743 345678889999999998875
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.69 E-value=1.4e-16 Score=135.28 Aligned_cols=103 Identities=25% Similarity=0.565 Sum_probs=88.4
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
++++++.+|+..+.+. ++++|.|||+||++|+++.|.++++++.+.+. +.+.++.+||+.+.+..++++|+|+
T Consensus 2 ~~~l~~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~~~~~~~~~~~~~i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKED-----GKGVLAAVDCTKPEHDALKEEYNVK 74 (104)
T ss_pred eEEechHhHHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-----CceEEEEEECCCCccHHHHHhCCCc
Confidence 6788899999988765 58999999999999999999999999988642 3588999999765589999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++||+++|++|+. +..+.|..+.+.|.+||
T Consensus 75 ~~Pt~~~~~~g~~-------------~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF-------------VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe-------------eEEeCCCCCHHHHHhhC
Confidence 9999999988742 34678899999998875
No 27
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=156.52 Aligned_cols=110 Identities=19% Similarity=0.432 Sum_probs=97.3
Q ss_pred cCcceecCcccHHHHHhc-CCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHh
Q 010178 45 VDHAVELNATNFDAVLRD-TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~-~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (516)
...+.++|..||...|.. +..+||||+||||||++|+.+.|.+++++.+|+ |.+.+++||| |+++.++.+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--D~~p~vAaq 92 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--DAEPMVAAQ 92 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--CcchhHHHH
Confidence 344899999999986644 445699999999999999999999999999997 6799999999 468999999
Q ss_pred CCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 124 ~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
|||+++||++.|.+|+. +..|.|....+.|..|+.+.++.
T Consensus 93 fgiqsIPtV~af~dGqp-------------VdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAFKDGQP-------------VDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEeeCCcC-------------ccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999998854 35588999999999999999876
No 28
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.69 E-value=2.8e-16 Score=142.97 Aligned_cols=89 Identities=22% Similarity=0.457 Sum_probs=78.0
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...+.+++.++|++.+...++++++|+|||+||++|+++.|.++++++++.+ ..+.|+.||+ +++++++++|
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~------~~v~f~~VDv--d~~~~la~~~ 98 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN------NNLKFGKIDI--GRFPNVAEKF 98 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCeEEEEEEC--CCCHHHHHHc
Confidence 4568889999999988766668899999999999999999999999999863 2499999998 4688999999
Q ss_pred CCCc------cCeEEEecCCccc
Q 010178 125 SVGH------YPMLLWGSPSKFV 141 (516)
Q Consensus 125 ~I~~------~PTl~~f~~g~~~ 141 (516)
+|.+ +||+++|++|+..
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEE
Confidence 9988 9999999988644
No 29
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.69 E-value=7.8e-17 Score=138.77 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeE
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl 132 (516)
.++|++.+....+++++|+|||+|||||+.+.|.++++++++. +.+.|+.||+ |++++++.+|+|.++||+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-------~~v~f~kVDv--D~~~~la~~~~V~~iPTf 72 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-------NFAVIYLVDI--DEVPDFNKMYELYDPPTV 72 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CceEEEEEEC--CCCHHHHHHcCCCCCCEE
Confidence 4678888876556899999999999999999999999999985 4588999997 578999999999999999
Q ss_pred EEecCCccc
Q 010178 133 LWGSPSKFV 141 (516)
Q Consensus 133 ~~f~~g~~~ 141 (516)
++|++|+..
T Consensus 73 ~~fk~G~~v 81 (114)
T cd02954 73 MFFFRNKHM 81 (114)
T ss_pred EEEECCEEE
Confidence 999998654
No 30
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.67 E-value=2.9e-16 Score=133.97 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=77.9
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc-cHHHHHhCCCCccC
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYP 130 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~~~I~~~P 130 (516)
+.++|++.+.+.+++++||+|||+||++|+.+.|.++++++++. .+.|+.||++.+. ..+++++|+|+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~d~~~~~~~l~~~~~V~~~P 73 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNGDENDSTMELCRREKIIEVP 73 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEECCCChHHHHHHHHcCCCcCC
Confidence 45788888887767999999999999999999999999999983 3789999985321 24899999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
|+++|++|+. +..+.| ...+.|.+-+.
T Consensus 74 t~~~~~~G~~-------------v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 74 HFLFYKDGEK-------------IHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEEEEeCCeE-------------EEEEeC-CCHHHHHHHHH
Confidence 9999988743 344556 45566665553
No 31
>PHA02278 thioredoxin-like protein
Probab=99.67 E-value=2.4e-16 Score=134.32 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=76.2
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccC
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYP 130 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~P 130 (516)
.++|++.+.+ +++++|+|||+|||||+.+.|.++++++++. ..+.|+.||++.+. +.+++++|+|.++|
T Consensus 4 ~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdvd~~~~d~~~l~~~~~I~~iP 74 (103)
T PHA02278 4 LVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNLDAEDVDREKAVKLFDIMSTP 74 (103)
T ss_pred HHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEECCccccccHHHHHHCCCcccc
Confidence 4678888754 4789999999999999999999999998754 23668889985322 36899999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHH
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~ 169 (516)
|+++|++|+. +..+.|..+.+.|.++
T Consensus 75 T~i~fk~G~~-------------v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 75 VLIGYKDGQL-------------VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEECCEE-------------EEEEeCCCCHHHHHhh
Confidence 9999998843 4557787888877664
No 32
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.67 E-value=4.5e-16 Score=132.01 Aligned_cols=104 Identities=26% Similarity=0.530 Sum_probs=87.5
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
+|.+|++++|++.+.+. +++++|+|||+||++|+.+.|.|+++++.+.+. ..+.++.+||+ ++ +++..+++
T Consensus 1 ~v~~l~~~~f~~~i~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~--~~-~~~~~~~~ 71 (104)
T cd02995 1 PVKVVVGKNFDEVVLDS-DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-----DNVVIAKMDAT--AN-DVPSEFVV 71 (104)
T ss_pred CeEEEchhhhHHHHhCC-CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-----CCEEEEEEeCc--ch-hhhhhccC
Confidence 36789999999998876 478999999999999999999999999998642 25999999995 33 68899999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
.++||+++|++|+. .....|.|..+.++|.+||
T Consensus 72 ~~~Pt~~~~~~~~~-----------~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK-----------SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc-----------CCceEccCCcCHHHHHhhC
Confidence 99999999988741 1235688999999999885
No 33
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-16 Score=166.70 Aligned_cols=123 Identities=21% Similarity=0.412 Sum_probs=101.7
Q ss_pred hhhhccCCCCccccC--cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEE
Q 010178 32 ILRSLGDTEKKVEVD--HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTR 109 (516)
Q Consensus 32 ~~~~~~~~~~~~~~~--~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~ 109 (516)
+.+.+++++.|...+ +|..+.++||++++.+. +|-|||+|||||||||++++|.|++||+.|++. +.|.+++
T Consensus 350 ~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de-~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-----~~vviAK 423 (493)
T KOG0190|consen 350 VKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDE-GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-----ENVVIAK 423 (493)
T ss_pred cccccccCCCCcccccCCeEEEeecCHHHHhhcc-ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC-----CCcEEEE
Confidence 455667777776554 79999999999999886 477999999999999999999999999999873 4699999
Q ss_pred EeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 110 VDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 110 VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+|.+.++- ....|.+||||++|+.|. ++.+..|.|.|+.+++..||.++-.
T Consensus 424 mDaTaNd~----~~~~~~~fPTI~~~pag~-----------k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 424 MDATANDV----PSLKVDGFPTILFFPAGH-----------KSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred eccccccC----ccccccccceEEEecCCC-----------CCCCcccCCCcchHHHHhhhccCCC
Confidence 99864332 355678899999999873 2445778999999999999988754
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.66 E-value=6.2e-16 Score=130.54 Aligned_cols=102 Identities=28% Similarity=0.614 Sum_probs=87.3
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
|++++|+..+. ++++++|.||++||++|+.+.|.++++++.+.+. +.+.++.+|| +++..++++|+|+++|
T Consensus 1 l~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-----~~~~~~~~d~--~~~~~~~~~~~i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-----PDIVLAKVDA--TAEKDLASRFGVSGFP 71 (102)
T ss_pred CchhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-----CceEEEEEEc--cchHHHHHhCCCCcCC
Confidence 56789999887 3588999999999999999999999999998642 2599999998 4689999999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
|+++|++|.. +..|.|..+.+.|..||.+++
T Consensus 72 ~~~~~~~~~~-------------~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 72 TIKFFPKGKK-------------PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred EEEEecCCCc-------------ceeecCCCCHHHHHHHHHhcC
Confidence 9999987631 356889999999999998753
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=99.65 E-value=1e-15 Score=137.92 Aligned_cols=106 Identities=22% Similarity=0.494 Sum_probs=91.1
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...+++++.++|++.+.+ +++++|+|||+||++|+.+.|.++++++++. +.+.++.||+ +++++++++|
T Consensus 34 ~~~~i~~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--~~~~~l~~~~ 102 (139)
T PRK10996 34 DGEVINATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GKVRFVKVNT--EAERELSARF 102 (139)
T ss_pred CCCCEEcCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEeC--CCCHHHHHhc
Confidence 445778899999998865 4889999999999999999999999999876 4589999998 4688999999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
+|+++||+++|++|+ .+..+.|..+.+.|.+||++.+
T Consensus 103 ~V~~~Ptlii~~~G~-------------~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 103 RIRSIPTIMIFKNGQ-------------VVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCCccCEEEEEECCE-------------EEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999998774 3456788899999999998753
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.64 E-value=1.3e-15 Score=129.18 Aligned_cols=104 Identities=32% Similarity=0.621 Sum_probs=87.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
++++++++|++.+.+. +++++|.|||+||++|+.+.|.++++++.+... +.+.++.+||+. ++..+|++|+|.
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~~-~~~~~~~~~~i~ 74 (105)
T cd02998 2 VVELTDSNFDKVVGDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-----DDVVIAKVDADE-ANKDLAKKYGVS 74 (105)
T ss_pred eEEcchhcHHHHhcCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-----CCEEEEEEECCC-cchhhHHhCCCC
Confidence 5678999999987665 468999999999999999999999999998632 359999999952 178999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++||+++|.+|. .....+.|.++.+.|.+||
T Consensus 75 ~~P~~~~~~~~~------------~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 75 GFPTLKFFPKGS------------TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CcCEEEEEeCCC------------CCccccCCccCHHHHHhhC
Confidence 999999998762 1235678999999998885
No 37
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=1.1e-15 Score=161.57 Aligned_cols=111 Identities=16% Similarity=0.387 Sum_probs=91.0
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH
Q 010178 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (516)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (516)
.+..|++|+.++|+..+. ...++++||+|||+||++|+.+.|.|+++++++.+. .+.|+.|||+.+.+...++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~------~v~~~kVdvD~~~~~~~~~ 422 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS------GVKVAKFRADGDQKEFAKQ 422 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC------CcEEEEEECCCCccHHHHH
Confidence 455799999999999986 455689999999999999999999999999998642 3889999997543444457
Q ss_pred hCCCCccCeEEEecCCcccCCCCCCCccccchhhcc-ccCCHHHHHHHHHH
Q 010178 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINK 172 (516)
Q Consensus 123 ~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~-G~~~~e~L~~~i~~ 172 (516)
+|+|++|||+++|++|.. ....|. |.++.+.|+.||+.
T Consensus 423 ~~~I~~~PTii~Fk~g~~------------~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 423 ELQLGSFPTILFFPKHSS------------RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HcCCCccceEEEEECCCC------------CceeCCCCCCCHHHHHHHHHh
Confidence 999999999999988731 123476 58999999999974
No 38
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.64 E-value=1.7e-15 Score=129.07 Aligned_cols=97 Identities=13% Similarity=0.367 Sum_probs=79.9
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
-+.++|++.+.. +++++|+|||+||++|+.+.|.++++++.+.+ ..+.|+.+|++ +.+++++|+|+++|
T Consensus 5 ~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~------~~~~~~~vd~d---~~~~~~~~~v~~~P 73 (102)
T cd02948 5 NNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD------DLLHFATAEAD---TIDTLKRYRGKCEP 73 (102)
T ss_pred cCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC------CcEEEEEEeCC---CHHHHHHcCCCcCc
Confidence 467889988764 58899999999999999999999999999863 24789999974 67899999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
|+++|++|+. +....| .+.+.|.++|.+
T Consensus 74 t~~~~~~g~~-------------~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 74 TFLFYKNGEL-------------VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEECCEE-------------EEEEec-CChHHHHHHHhh
Confidence 9999988743 344555 478888888864
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.62 E-value=2.9e-15 Score=127.91 Aligned_cols=97 Identities=19% Similarity=0.437 Sum_probs=79.4
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 54 ~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
++|++.. + +++++|.|||+||++|+.+.|.++++++.+++.+ ..+.++.+||+ .+..++++|+|.++||++
T Consensus 7 ~~~~~~~-~--~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 7 DSFKDVR-K--EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSG----SPVRVGKLDAT--AYSSIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhhc-c--CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcC----CcEEEEEEECc--cCHhHHhhcCCccccEEE
Confidence 6777642 2 3679999999999999999999999999986432 35899999984 578999999999999999
Q ss_pred EecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
+|.+|. ...+.|.++.+.|.+|+++.
T Consensus 78 l~~~~~--------------~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 78 LLKGDL--------------AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEcCCC--------------ceeecCCCCHHHHHHHHHhh
Confidence 996542 13478899999999999763
No 40
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.9e-15 Score=127.14 Aligned_cols=89 Identities=21% Similarity=0.473 Sum_probs=71.6
Q ss_pred HhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCc
Q 010178 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139 (516)
Q Consensus 60 l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~ 139 (516)
..+.++++++|+|||+|||||+.+.|.+.+|+.+|. + +.|+.||++. +.+++++++|+..||++||++|+
T Consensus 16 ~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-------~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 16 AAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-------D-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred HhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-------C-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCE
Confidence 334446899999999999999999999999999996 3 8999999953 99999999999999999998874
Q ss_pred ccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 140 FVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
. +..+.| .+.+.+.+.|.+
T Consensus 86 ~-------------~~~~vG-a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 86 E-------------VDEVVG-ANKAELEKKIAK 104 (106)
T ss_pred E-------------EEEEec-CCHHHHHHHHHh
Confidence 3 334444 344466666544
No 41
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.59 E-value=9e-15 Score=130.79 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=83.2
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+..+|++.+.+..+++++|+|||+|||||+.+.|.++++++++. +.+.|+.||+ |+++++++.|+|++.||
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-------~~~~~~kVDV--De~~dla~~y~I~~~~t 80 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK-------NFAVIYLVDI--TEVPDFNTMYELYDPCT 80 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--CCCHHHHHHcCccCCCc
Confidence 46889998876667899999999999999999999999999986 4588899997 57999999999998876
Q ss_pred EE-EecCCcccCCCCCCCccccchhhccc--------cCCHHHHHHHHHHhcc
Q 010178 132 LL-WGSPSKFVAGSWEPNQEKKEIRALED--------WQTADGLLTWINKQTS 175 (516)
Q Consensus 132 l~-~f~~g~~~~~~~~~~~~~~~v~~~~G--------~~~~e~L~~~i~~~l~ 175 (516)
++ ||++|+. .+....| ..+.++|++.++..+.
T Consensus 81 ~~~ffk~g~~------------~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 81 VMFFFRNKHI------------MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEEECCeE------------EEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 66 8888741 2233344 4678888888876653
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.59 E-value=1.2e-14 Score=122.24 Aligned_cols=101 Identities=24% Similarity=0.462 Sum_probs=84.9
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
++.++|.+.+.+. +++++|.||++||++|+.+.|.++++++.+. +.+.|+.+|++ ++..++++|+|.++|
T Consensus 1 i~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~v~~~P 70 (101)
T TIGR01068 1 LTDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNVD--ENPDIAAKYGIRSIP 70 (101)
T ss_pred CCHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEECC--CCHHHHHHcCCCcCC
Confidence 3567888888764 4689999999999999999999999998885 35999999984 678899999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
|+++|++|+. +..+.|..+.+.|.+||++.+
T Consensus 71 ~~~~~~~g~~-------------~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 71 TLLLFKNGKE-------------VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EEEEEeCCcE-------------eeeecCCCCHHHHHHHHHhhC
Confidence 9999987632 245668889999999998753
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=1.4e-14 Score=131.02 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=83.0
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeE
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl 132 (516)
...|++.+.. ++++||+|||+||++|+.+.|.+.++++.+. +.+.|+.||++.+....++++|+|.++||+
T Consensus 10 ~~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~ 80 (142)
T cd02950 10 STPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNVDNPKWLPEIDRYRVDGIPHF 80 (142)
T ss_pred cCCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEcCCcccHHHHHHcCCCCCCEE
Confidence 4566766654 4889999999999999999999999999986 346788888765556789999999999999
Q ss_pred EEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 133 LWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 133 ~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
++|. +|+ .+..+.|..+.+.|.++|.+.+..
T Consensus 81 v~~~~~G~-------------~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 81 VFLDREGN-------------EEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEECCCCC-------------EEEEEeCCCCHHHHHHHHHHHHcC
Confidence 9995 553 335577888999999999987753
No 44
>PLN02309 5'-adenylylsulfate reductase
Probab=99.58 E-value=8.9e-15 Score=154.57 Aligned_cols=111 Identities=18% Similarity=0.416 Sum_probs=91.2
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH
Q 010178 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (516)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (516)
....|++|+.++|++.+. ...++++||+|||+||++|+.+.|.|+++++.+.+ ..+.|+.|||+. .+.++|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~------~~V~f~kVD~d~-~~~~la~ 415 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG------SGVKVAKFRADG-DQKEFAK 415 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCeEEEEEECCC-cchHHHH
Confidence 345789999999999875 34468899999999999999999999999999864 249999999952 4678886
Q ss_pred -hCCCCccCeEEEecCCcccCCCCCCCccccchhhcc-ccCCHHHHHHHHHHh
Q 010178 123 -KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINKQ 173 (516)
Q Consensus 123 -~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~-G~~~~e~L~~~i~~~ 173 (516)
+|+|++|||+++|++|.. ....|. |.++.++|++||+..
T Consensus 416 ~~~~I~~~PTil~f~~g~~------------~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLGSFPTILLFPKNSS------------RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCceeeEEEEEeCCCC------------CeeecCCCCcCHHHHHHHHHHh
Confidence 699999999999987631 124476 479999999999863
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.56 E-value=1.8e-14 Score=120.35 Aligned_cols=100 Identities=35% Similarity=0.741 Sum_probs=84.5
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCcc
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~ 129 (516)
+++.++|.+.+.+. ++++|.||++||++|+.+.|.|+++++.++. .+.+.++.+||+ ++..++++|+|+++
T Consensus 2 ~l~~~~~~~~i~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~--~~~~~~~~~~i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDS--KDVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDCT--ANNDLCSEYGVRGY 72 (101)
T ss_pred cccHHHHHHHHhCC--CcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeecc--chHHHHHhCCCCCC
Confidence 57888999999886 4799999999999999999999999999841 146999999984 58899999999999
Q ss_pred CeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
||+++|+++. ..+..+.|..+.++|.+|+
T Consensus 73 Pt~~~~~~~~------------~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGS------------KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCC------------cccccCCCCcCHHHHHhhC
Confidence 9999998752 2335678888999988874
No 46
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.56 E-value=1.5e-14 Score=123.77 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=81.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCC--ChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANW--CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~W--C~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
....++..||++.+.. +..++|.|||+| ||+|+.+.|.++++++++. +.+.|+.||+ +++++++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~-------~~v~f~kVdi--d~~~~la~~f 79 (111)
T cd02965 11 GWPRVDAATLDDWLAA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP-------GRFRAAVVGR--ADEQALAARF 79 (111)
T ss_pred CCcccccccHHHHHhC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCC-------CcEEEEEEEC--CCCHHHHHHc
Confidence 4567899999988844 467899999997 9999999999999999986 4689999998 4678999999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHH
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLL 167 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~ 167 (516)
+|+++||+++|++|+.. ..+.|..+.+++.
T Consensus 80 ~V~sIPTli~fkdGk~v-------------~~~~G~~~~~e~~ 109 (111)
T cd02965 80 GVLRTPALLFFRDGRYV-------------GVLAGIRDWDEYV 109 (111)
T ss_pred CCCcCCEEEEEECCEEE-------------EEEeCccCHHHHh
Confidence 99999999999988543 4466777777664
No 47
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.56 E-value=1.6e-14 Score=154.79 Aligned_cols=112 Identities=27% Similarity=0.550 Sum_probs=96.3
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.|+.++.++|+..+.+. ++++|.|||+||++|+++.|.|.++++.+.+.+ ..+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~~~~~i~~~--~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~----~~v~~~~vd~~--~~~~l~~~~~i 73 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSH--EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG----PPIKLAKVDAT--EEKDLAQKYGV 73 (462)
T ss_pred CceECCHHHHHHHHhcC--CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC----CceEEEEEECC--CcHHHHHhCCC
Confidence 47889999999998764 678999999999999999999999999887533 45999999995 57899999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
++|||+++|++|+. .+..|.|.++.+.|.+|+.+.++..+
T Consensus 74 ~~~Pt~~~~~~g~~------------~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 74 SGYPTLKIFRNGED------------SVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ccccEEEEEeCCcc------------ceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999987742 13568899999999999999987554
No 48
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.56 E-value=1.7e-14 Score=125.12 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.8
Q ss_pred cceecCcccHHHHHhcCC-CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCC
Q 010178 47 HAVELNATNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~-~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~ 125 (516)
.+.+++.++|.+.+.+.+ +++++|.|||+||++|+.+.|.++++++++. .+.|+.||++ ++ .++++|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~~--~~-~l~~~~~ 73 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINAE--KA-FLVNYLD 73 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEch--hh-HHHHhcC
Confidence 467788899999887643 4789999999999999999999999999984 3789999984 45 9999999
Q ss_pred CCccCeEEEecCCccc
Q 010178 126 VGHYPMLLWGSPSKFV 141 (516)
Q Consensus 126 I~~~PTl~~f~~g~~~ 141 (516)
|+++||+++|++|+..
T Consensus 74 i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 74 IKVLPTLLVYKNGELI 89 (113)
T ss_pred CCcCCEEEEEECCEEE
Confidence 9999999999998654
No 49
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.55 E-value=4.4e-15 Score=143.54 Aligned_cols=92 Identities=15% Similarity=0.404 Sum_probs=79.4
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~ 144 (516)
+..++|+||||||+||+++.|.|.++..++++.+ ..|+++++||+ ..+.++.+|||+|||||++|+++.
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig----~PikVGKlDaT--~f~aiAnefgiqGYPTIk~~kgd~----- 111 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG----LPIKVGKLDAT--RFPAIANEFGIQGYPTIKFFKGDH----- 111 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcC----Cceeecccccc--cchhhHhhhccCCCceEEEecCCe-----
Confidence 4678999999999999999999999999888655 45999999996 589999999999999999998753
Q ss_pred CCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 145 WEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
...|.|+|+.++|++|..+-.+.
T Consensus 112 ---------a~dYRG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 112 ---------AIDYRGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred ---------eeecCCCccHHHHHHHHHhcccc
Confidence 24589999999999998665443
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.54 E-value=3.5e-14 Score=121.05 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=77.6
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCc
Q 010178 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGH 128 (516)
Q Consensus 54 ~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~ 128 (516)
+.|++.+.. ++++||+|||+||++|+.+.|.+ .++++.+. +.+.++.||++.+. +..++++|+|++
T Consensus 2 ~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~~~~~~~~~~~~~~~~i~~ 72 (104)
T cd02953 2 AALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADWTKNDPEITALLKRFGVFG 72 (104)
T ss_pred HHHHHHHHc--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEecCCCCHHHHHHHHHcCCCC
Confidence 457777755 48899999999999999999988 67888875 25899999985322 578999999999
Q ss_pred cCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
+||+++|.+|. ++.+..+.|..+.++|.++|
T Consensus 73 ~Pti~~~~~~~-----------g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 73 PPTYLFYGPGG-----------EPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCEEEEECCCC-----------CCCCcccccccCHHHHHHHh
Confidence 99999997420 13446678999999998876
No 51
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.54 E-value=3.7e-14 Score=118.98 Aligned_cols=78 Identities=17% Similarity=0.453 Sum_probs=68.8
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeE
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl 132 (516)
.++|++.+....+++++|+||++||++|+.+.|.++++++.+. +.+.++.+|+ +++.+++++|+|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PSVLFLSIEA--EELPEISEKFEITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CceEEEEEcc--ccCHHHHHhcCCccccEE
Confidence 4678888887656899999999999999999999999999973 4599999997 468899999999999999
Q ss_pred EEecCCc
Q 010178 133 LWGSPSK 139 (516)
Q Consensus 133 ~~f~~g~ 139 (516)
++|.+|+
T Consensus 73 ~~~~~g~ 79 (97)
T cd02984 73 VFFRNGT 79 (97)
T ss_pred EEEECCE
Confidence 9998774
No 52
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.53 E-value=3.1e-14 Score=121.82 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=69.0
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 54 ~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
+.|++.+.+..+++++|.|+|+|||+|+.+.|.++++|+++. +.+.|+.||+ |+.++++++|+|.+.||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~-------~~~~f~kVDV--Dev~dva~~y~I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS-------KMASIYLVDV--DKVPVYTQYFDISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc-------CceEEEEEec--cccHHHHHhcCceeCcEEE
Confidence 567787876667999999999999999999999999999985 3489999997 5799999999999999999
Q ss_pred EecCCc
Q 010178 134 WGSPSK 139 (516)
Q Consensus 134 ~f~~g~ 139 (516)
+|.+|+
T Consensus 74 ffkngk 79 (114)
T cd02986 74 FFFNGQ 79 (114)
T ss_pred EEECCc
Confidence 998875
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.52 E-value=5.9e-14 Score=151.44 Aligned_cols=112 Identities=18% Similarity=0.443 Sum_probs=95.2
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...+..+++++|++.+.+. ++++||+|||+||++|+.+.|.|+++++.+.+. +.+.++.+||+ .+...+++|
T Consensus 356 ~~~v~~l~~~~f~~~v~~~-~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-----~~v~~~~id~~--~~~~~~~~~ 427 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKS-DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-----DSIIVAKMNGT--ANETPLEEF 427 (477)
T ss_pred CCCeEEecccchHHHHhcC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-----CcEEEEEEECC--CCccchhcC
Confidence 4568899999999987664 588999999999999999999999999998642 35899999985 577789999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
+|+++||+++|++|.. ....|.|.++.++|.+||+++...
T Consensus 428 ~v~~~Pt~~~~~~~~~------------~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 428 SWSAFPTILFVKAGER------------TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CCcccCeEEEEECCCc------------ceeEecCcCCHHHHHHHHHHcCCC
Confidence 9999999999987631 124588999999999999998753
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.52 E-value=7.8e-14 Score=121.06 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=71.5
Q ss_pred ceecCc-ccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 48 AVELNA-TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 48 v~~L~~-~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
+..++. ++|.+.+.+. ++++|.||++||++|+.+.|.++++++++. .+.|+.||+ +++++++++|+|
T Consensus 6 v~~i~~~~~~~~~i~~~--~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--~~~~~l~~~~~v 73 (113)
T cd02989 6 YREVSDEKEFFEIVKSS--ERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--EKAPFLVEKLNI 73 (113)
T ss_pred eEEeCCHHHHHHHHhCC--CcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--ccCHHHHHHCCC
Confidence 455665 8899988764 679999999999999999999999999874 379999997 568899999999
Q ss_pred CccCeEEEecCCccc
Q 010178 127 GHYPMLLWGSPSKFV 141 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~ 141 (516)
.++||+++|++|+..
T Consensus 74 ~~vPt~l~fk~G~~v 88 (113)
T cd02989 74 KVLPTVILFKNGKTV 88 (113)
T ss_pred ccCCEEEEEECCEEE
Confidence 999999999998644
No 55
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.50 E-value=5e-14 Score=136.77 Aligned_cols=109 Identities=27% Similarity=0.559 Sum_probs=94.0
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
++.+|++.++... ..|+|.|||+||+..+.++|.|++.|..++...+. +++..+.|||+ .+..|+.+|.|..||
T Consensus 1 lt~~N~~~il~s~--elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~--~kvvwg~VDcd--~e~~ia~ky~I~KyP 74 (375)
T KOG0912|consen 1 LTSENIDSILDSN--ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPE--GKVVWGKVDCD--KEDDIADKYHINKYP 74 (375)
T ss_pred CccccHHHhhccc--eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCC--cceEEEEcccc--hhhHHhhhhccccCc
Confidence 3567888888764 78999999999999999999999999998865543 67999999995 578899999999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccC
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~ 177 (516)
|+++|.+|.... ..|.|.|+.+.|.+||++++...
T Consensus 75 TlKvfrnG~~~~------------rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 75 TLKVFRNGEMMK------------REYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred eeeeeeccchhh------------hhhccchhHHHHHHHHHHHhccH
Confidence 999999986542 46899999999999999988643
No 56
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9e-14 Score=131.77 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=88.8
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCcc
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~ 129 (516)
.-++..|+..+.....+.++|+|+|+|||||++.+|.|..|+.+|. ...|.+||+ |+.+.++..+||.+.
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--------~aVFlkVdV--d~c~~taa~~gV~am 75 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--------GAVFLKVDV--DECRGTAATNGVNAM 75 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--------ccEEEEEeH--HHhhchhhhcCcccC
Confidence 3456789999988878899999999999999999999999999995 378999997 678999999999999
Q ss_pred CeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
||+++|.+|+ .+..+.| .++..|.+.+.++++.+.
T Consensus 76 PTFiff~ng~-------------kid~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 76 PTFIFFRNGV-------------KIDQIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred ceEEEEecCe-------------EeeeecC-CCHHHHHHHHHHHhccCc
Confidence 9999999874 3345555 678888888888876543
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.46 E-value=3.6e-13 Score=113.43 Aligned_cols=93 Identities=14% Similarity=0.320 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEe
Q 010178 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (516)
Q Consensus 56 f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f 135 (516)
++..+.+ .+++++|.||++||++|+.+.|.++++++++. +.+.++.+|+ +++++++.+++|.++||+++|
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--DEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--CCCHHHHHHCCCeeccEEEEE
Confidence 3445555 35889999999999999999999999999985 3589999998 467899999999999999999
Q ss_pred cCCcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
++|+ .+..+.|..+.++|.++++
T Consensus 75 ~~g~-------------~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 75 KDKE-------------LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ECCe-------------EEEEEeCCccHHHHHHhhC
Confidence 8763 3456788889999888863
No 58
>PTZ00051 thioredoxin; Provisional
Probab=99.45 E-value=3.5e-13 Score=113.30 Aligned_cols=77 Identities=19% Similarity=0.523 Sum_probs=66.1
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+.++|+..+.. +++++|.||++||++|+.+.|.++++++++. .+.++.+|++ ++..++++|+|.++||
T Consensus 7 ~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~~~~~~vd~~--~~~~~~~~~~v~~~Pt 74 (98)
T PTZ00051 7 SQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------KMVFVKVDVD--ELSEVAEKENITSMPT 74 (98)
T ss_pred CHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------CcEEEEEECc--chHHHHHHCCCceeeE
Confidence 34677777754 4789999999999999999999999999764 3889999984 6789999999999999
Q ss_pred EEEecCCcc
Q 010178 132 LLWGSPSKF 140 (516)
Q Consensus 132 l~~f~~g~~ 140 (516)
+++|++|+.
T Consensus 75 ~~~~~~g~~ 83 (98)
T PTZ00051 75 FKVFKNGSV 83 (98)
T ss_pred EEEEeCCeE
Confidence 999988754
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.42 E-value=8.4e-13 Score=123.38 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=85.2
Q ss_pred cCcceecCc-ccHHHHHhcCC-CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH
Q 010178 45 VDHAVELNA-TNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (516)
Q Consensus 45 ~~~v~~L~~-~~f~~~l~~~~-~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (516)
-..+.+++. ++|.+.+.+.. +.+|+|.|||+||++|+.+.|.++++|+.+. .+.|+.||++ ++ .++.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~vkF~kVd~d--~~-~l~~ 129 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------AVKFCKIRAS--AT-GASD 129 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CeEEEEEecc--ch-hhHH
Confidence 345788888 99999887642 3589999999999999999999999999974 4899999985 34 8999
Q ss_pred hCCCCccCeEEEecCCcccCCCCCCCccccchh-hccccCCHHHHHHHHHH
Q 010178 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR-ALEDWQTADGLLTWINK 172 (516)
Q Consensus 123 ~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~-~~~G~~~~e~L~~~i~~ 172 (516)
+|+|.++||+++|++|+....- .... ......+.++|..++.+
T Consensus 130 ~f~v~~vPTlllyk~G~~v~~~-------vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 130 EFDTDALPALLVYKGGELIGNF-------VRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred hCCCCCCCEEEEEECCEEEEEE-------echHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999998754310 0011 11225677788777754
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.40 E-value=1.8e-12 Score=138.94 Aligned_cols=114 Identities=24% Similarity=0.471 Sum_probs=92.9
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...+..+++.+|++.+.+. ++.+||.|||+||++|+.+.|.++++++.+++.+ ..+.++.+||+. + ++.. +
T Consensus 345 ~~~v~~l~~~~f~~~v~~~-~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~i~~~~id~~~--n-~~~~-~ 415 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDE-TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE----SDVVIAKMDATA--N-DVPP-F 415 (462)
T ss_pred CCccEEeeCcCHHHHhccC-CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC----CcEEEEEEECCC--C-ccCC-C
Confidence 4568899999999998764 5789999999999999999999999999997421 269999999963 3 3444 9
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
+|+++||+++|++|... ....+.|.++.+.|.+||.++....+
T Consensus 416 ~i~~~Pt~~~~~~~~~~-----------~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKS-----------EPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred CccccCEEEEEeCCCCc-----------CceEecCcCCHHHHHHHHHhcCCCCC
Confidence 99999999999877421 12457899999999999998876443
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.38 E-value=1.5e-12 Score=114.49 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=75.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc---------c
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---------N 117 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~---------~ 117 (516)
.+..++.++|.+.+.+. +.++|+|+++|||+|+.+.|.+++++++.+ +.++.||.+.+. -
T Consensus 7 ~~~~it~~~~~~~i~~~--~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---------~~~y~vdvd~~~~~~~~~~~~~ 75 (122)
T TIGR01295 7 GLEVTTVVRALEALDKK--ETATFFIGRKTCPYCRKFSGTLSGVVAQTK---------APIYYIDSENNGSFEMSSLNDL 75 (122)
T ss_pred cceecCHHHHHHHHHcC--CcEEEEEECCCChhHHHHhHHHHHHHHhcC---------CcEEEEECCCccCcCcccHHHH
Confidence 35678888899988764 668999999999999999999999999832 557777765321 1
Q ss_pred HHHHHhCC----CCccCeEEEecCCcccCCCCCCCccccchhhccc-cCCHHHHHHHHH
Q 010178 118 TNLCDKFS----VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWIN 171 (516)
Q Consensus 118 ~~l~~~~~----I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G-~~~~e~L~~~i~ 171 (516)
.++..+|+ |.++||+++|++|+.. ....| ..+.++|.+|+.
T Consensus 76 ~~~~~~~~i~~~i~~~PT~v~~k~Gk~v-------------~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 76 TAFRSRFGIPTSFMGTPTFVHITDGKQV-------------SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHHHcCCcccCCCCCEEEEEeCCeEE-------------EEEeCCCCCHHHHHHHhh
Confidence 24556665 5569999999998543 34556 567888888763
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.38 E-value=2.5e-12 Score=111.64 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=76.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEe
Q 010178 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (516)
Q Consensus 56 f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f 135 (516)
|.+.+.+ +..++|.|||+||++|+.+.|.+++++..+ +.+.+..+|. +++++++.+|+|.++||+++|
T Consensus 15 ~~~~l~~--~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~--d~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 15 FFKEMKN--PVDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF--DEDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHHHhCC--CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC--CcCHHHHHHcCCCcCCEEEEE
Confidence 4444443 255889999999999999999999999875 2488999997 468999999999999999999
Q ss_pred cCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
++|.... . ..+.|..+.+++.++|...+.
T Consensus 83 ~~g~~~~----------~-~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 83 QDGGKDG----------G-IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eCCeecc----------e-EEEEecCchHHHHHHHHHHHh
Confidence 8763221 1 246788888899999887653
No 63
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.37 E-value=3.3e-12 Score=104.47 Aligned_cols=91 Identities=23% Similarity=0.512 Sum_probs=76.3
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 55 ~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
+|+..+... ++++|.||++||++|+.+.|.++++++. . +.+.++.+|++ .+..++.+|+|.++||+++
T Consensus 2 ~~~~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~~--~~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 2 EFEELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDVD--ENPELAEEYGVRSIPTFLF 69 (93)
T ss_pred chHHHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEECC--CChhHHHhcCcccccEEEE
Confidence 567777765 7789999999999999999999999988 2 35899999984 5789999999999999999
Q ss_pred ecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 135 GSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 135 f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
|.+|+ .+..+.|..+.+.|.++|
T Consensus 70 ~~~g~-------------~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 70 FKNGK-------------EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EECCE-------------EEEEEecCCCHHHHHHHh
Confidence 98774 234567778888888876
No 64
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.37 E-value=8.9e-12 Score=117.72 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------cccHHHHH
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------KINTNLCD 122 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---------------------d~~~~l~~ 122 (516)
++++++|+|||+||++|++++|.++++++. .+.++.|+.++ |.+..+.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 136 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL 136 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHH
Confidence 468999999999999999999999988652 15566666422 12234566
Q ss_pred hCCCCccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 123 ~~~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
.|+|.++|+.+++ ++|++ ...+.|..+.+.+.++|...+.
T Consensus 137 ~~gv~~~P~t~vid~~G~i-------------~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGII-------------RYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred hcCCCcCCeEEEECCCceE-------------EEEEecCCCHHHHHHHHHHHHH
Confidence 8999999976665 45543 3556788899888888877653
No 65
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.37 E-value=8.3e-12 Score=116.06 Aligned_cols=105 Identities=16% Similarity=0.365 Sum_probs=79.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------------
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------------ 114 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~------------ 114 (516)
.+..++++.+. +.+..+++++|+||++||++|+...|.+.++++++.+ ..+.++.|+++.
T Consensus 45 ~~~~~~g~~~~--l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 45 VLTDLEGKKIE--LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred EeecCCCCEEe--HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEcCCCHHHHHHHHHHh
Confidence 34556666554 3333458899999999999999999999999999974 237888888753
Q ss_pred --------cccHHHHHhCCCCccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 115 --------KINTNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 115 --------d~~~~l~~~~~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+.+..+++.|+|.++|+++++. +| ..+..+.|..+.+++.+++++
T Consensus 117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g-------------~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDG-------------KVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCCceEEECCcchHHHHcCCCCcCeEEEECCCC-------------cEEEEEeCCCCHHHHHHHHHH
Confidence 2356789999999999988875 33 233456788999999988864
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.36 E-value=3.7e-12 Score=112.31 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=76.4
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHH---HHHHHhCCCCCCCCCeEEEEEEecccc-----------ccHHH
Q 010178 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCALK-----------INTNL 120 (516)
Q Consensus 55 ~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~---~la~~~~~~~~~~~~~v~~~~VDc~~d-----------~~~~l 120 (516)
.++..+.+.+ ++++|.|||+||++|+.+.|.+. .+.+.+. +.+.++.||.+.+ .+.++
T Consensus 5 ~~~~a~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 5 DLAEAAADGK-KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHcCC-CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEccCCceeeccCCCCccHHHH
Confidence 3444444421 78999999999999999999885 5666664 2477888987532 24789
Q ss_pred HHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 121 ~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+.+|+|.++||+++|.++ | ++.+..+.|..+.+.+.++|+..+.
T Consensus 77 ~~~~~v~~~Pt~~~~~~~----g-------g~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPE----G-------GKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HHHcCCccccEEEEEcCC----C-------CceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999998753 0 1334567888899999999887654
No 67
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.33 E-value=4.2e-12 Score=110.64 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=67.9
Q ss_pred CcccHHHHHhcCCCCeEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----cccHH
Q 010178 52 NATNFDAVLRDTPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA-------~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (516)
+.++|.+.+.+.++++++|.||| +|||+|+.+.|.+++++.++. +.+.|+.||++. +.+.+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEcCCcccccCcchh
Confidence 45677888887666899999999 999999999999999999985 348899999853 23578
Q ss_pred HHHhCCCC-ccCeEEEecCC
Q 010178 120 LCDKFSVG-HYPMLLWGSPS 138 (516)
Q Consensus 120 l~~~~~I~-~~PTl~~f~~g 138 (516)
+..+|+|+ ++||+++|..|
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hHhccCcccCCCEEEEEcCC
Confidence 99999999 99999999665
No 68
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.4e-12 Score=132.60 Aligned_cols=106 Identities=27% Similarity=0.533 Sum_probs=87.0
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCcc
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~ 129 (516)
.+...+|...+... +++++|+||||||+||+.+.|+|+++++.++ +.+.++.|||+ ++.++|++|+|++|
T Consensus 33 ~~~~~~~~~~~~~~-~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~-------~~~~~~~vd~~--~~~~~~~~y~i~gf 102 (383)
T KOG0191|consen 33 ELTLDSFFDFLLKD-DSPWLVEFYAPWCGHCKKLAPTYKKLAKALK-------GKVKIGAVDCD--EHKDLCEKYGIQGF 102 (383)
T ss_pred hhhccccHHHhhcc-CCceEEEEECCCCcchhhhchHHHHHHHHhc-------CceEEEEeCch--hhHHHHHhcCCccC
Confidence 34455555555443 3678999999999999999999999999997 46899999995 68999999999999
Q ss_pred CeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
||+.+|.+| . .+..+.|.++++.+.+|+.+.+...+
T Consensus 103 Ptl~~f~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 103 PTLKVFRPG-K------------KPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred cEEEEEcCC-C------------ceeeccCcccHHHHHHHHHHhhcccc
Confidence 999999887 1 12457789999999999998876554
No 69
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.31 E-value=1.5e-11 Score=131.94 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec--------------------------ccccc
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC--------------------------ALKIN 117 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc--------------------------~~d~~ 117 (516)
+++++||+|||+||++|+.++|.+++++++++.. .+.|+.|.. ..|.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~------~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS------SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC------CeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 5689999999999999999999999999998632 244544432 11346
Q ss_pred HHHHHhCCCCccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 118 TNLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 118 ~~l~~~~~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
..+.+.|+|+++||++++ ++|+ .+..+.|..+.++|.++|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGk-------------IV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGD-------------VQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCe-------------EEEEEeCCCCHHHHHHHHH
Confidence 778999999999999766 4553 3356788999999999887
No 70
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.29 E-value=2.9e-11 Score=110.34 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=61.8
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc----------cHHHH-HhC---CCCccCe
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI----------NTNLC-DKF---SVGHYPM 131 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~----------~~~l~-~~~---~I~~~PT 131 (516)
++.+|+|||+||++|++++|.++++++++. +.++.|+.+.+. ..... ..| +|.++||
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG---------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcC---------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 557999999999999999999999999873 344445543211 12333 345 8999999
Q ss_pred EEEecC-CcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 132 LLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 132 l~~f~~-g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
++++.+ |.. ....+.|..+.+++.+.|.+.
T Consensus 122 t~LID~~G~~------------i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRK------------AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCE------------EEEEeecccCHHHHHHHHHHh
Confidence 999854 221 123467889999988887654
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.28 E-value=2e-11 Score=115.65 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=82.1
Q ss_pred cCcceecCcccHHHHHhcC-CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHh
Q 010178 45 VDHAVELNATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~-~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (516)
-..+..++..+|...+.+. ++.+|+|.||++||++|+.+.|.+++||+.+. .+.|+.||.+ .....
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~ad-----~~~~~ 147 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIST-----QCIPN 147 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEhH-----HhHhh
Confidence 3568889999999876553 34689999999999999999999999999984 3899999973 13689
Q ss_pred CCCCccCeEEEecCCcccCCCCCCCccccchhhccc-cCCHHHHHHHHHH
Q 010178 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWINK 172 (516)
Q Consensus 124 ~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G-~~~~e~L~~~i~~ 172 (516)
|+|.++||+++|++|+....- .....+.| ..+.++|..++.+
T Consensus 148 ~~i~~lPTlliyk~G~~v~~i-------vG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 148 YPDKNLPTILVYRNGDIVKQF-------IGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCCCEEEEEECCEEEEEE-------eCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999998654320 01112222 4677777777654
No 72
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.3e-11 Score=127.87 Aligned_cols=111 Identities=26% Similarity=0.600 Sum_probs=95.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCC
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I 126 (516)
.+..++..+|+..+.+.. ..++|.||||||+||+.++|+|++++..+.. . ..+.++.+||+ .+..+|.+++|
T Consensus 145 ~v~~l~~~~~~~~~~~~~-~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~----~~v~~~~~d~~--~~~~~~~~~~v 216 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSD-ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-K----ENVELGKIDAT--VHKSLASRLEV 216 (383)
T ss_pred ceEEccccchhhhhhccC-cceEEEEeccccHHhhhcChHHHHHHHHhcc-C----cceEEEeeccc--hHHHHhhhhcc
Confidence 388999999999888764 5679999999999999999999999998864 1 46999999996 57899999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccC
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~ 177 (516)
++|||+++|++|.. ....+.|.|+.+.|+.|+++..+..
T Consensus 217 ~~~Pt~~~f~~~~~------------~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEE------------DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCceEEEecCCCc------------ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999988632 1356789999999999999987764
No 73
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.24 E-value=5.1e-11 Score=96.54 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=67.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCC
Q 010178 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (516)
Q Consensus 68 vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~ 147 (516)
.+..||++||++|+.+.|.++++++++. ..+.+..||+ +++++++++|||.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~--~~~~~~~~~~~v~~vPt~~~--~g~-------- 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV--MENPQKAMEYGIMAVPAIVI--NGD-------- 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC--ccCHHHHHHcCCccCCEEEE--CCE--------
Confidence 3678999999999999999999999985 3488999997 46789999999999999986 432
Q ss_pred CccccchhhccccCCHHHHHHHHHHh
Q 010178 148 NQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 148 ~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
..+.|..+.+.|.++|.+.
T Consensus 63 -------~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 63 -------VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred -------EEEecCCCHHHHHHHHHhh
Confidence 2467888999999988764
No 74
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.23 E-value=5.5e-11 Score=100.74 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC--ccCeEEEecCCcccC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVA 142 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~--~~PTl~~f~~g~~~~ 142 (516)
+++++|.|+++||++|+.+.|.++++|++++ +.+.|+.||+ +++..+++.|||. ++||+++++.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~--~~~~~~~~~~~i~~~~~P~~~~~~~~~--- 79 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA--DDFGRHLEYFGLKEEDLPVIAIINLSD--- 79 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--HhhHHHHHHcCCChhhCCEEEEEeccc---
Confidence 4789999999999999999999999999997 4699999998 4578899999999 999999998721
Q ss_pred CCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 143 ~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
+ ..+....|..+.++|.+||.+.
T Consensus 80 ~--------~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 80 G--------KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c--------cccCCCccccCHHHHHHHHHhh
Confidence 0 1112223446899999999764
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.18 E-value=3.7e-11 Score=104.91 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCc--cCeEEEec-CCcc
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH--YPMLLWGS-PSKF 140 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~--~PTl~~f~-~g~~ 140 (516)
.++++||+|||+||++|+.+.|.+.+.+..... ...|+.||.+.+. ......|++.+ +||+++|. +|+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-------~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISEL-------SHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-------cCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCC
Confidence 368999999999999999999999998775431 1234445553322 24567899987 99999995 6654
Q ss_pred c
Q 010178 141 V 141 (516)
Q Consensus 141 ~ 141 (516)
.
T Consensus 90 ~ 90 (117)
T cd02959 90 H 90 (117)
T ss_pred c
Confidence 3
No 76
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.17 E-value=2e-10 Score=106.89 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=65.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc-----------ccHHHHHhCCC--CccCeEEEe
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------INTNLCDKFSV--GHYPMLLWG 135 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d-----------~~~~l~~~~~I--~~~PTl~~f 135 (516)
||+||++||++|++++|.++++++++. +.++.|+.+.+ ....+...|++ .++||.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEE
Confidence 788999999999999999999999974 55555655422 22346778995 699999987
Q ss_pred c-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 136 S-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 136 ~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
. +|++. ...+.|..+.++|.+.|.+.+..
T Consensus 144 d~~G~i~------------~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 144 NVNTLEA------------LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred eCCCcEE------------EEEEECCCCHHHHHHHHHHHHhh
Confidence 4 43221 13578999999999988887753
No 77
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.17 E-value=1.1e-10 Score=103.76 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=57.3
Q ss_pred CCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc----------------------cHHH
Q 010178 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI----------------------NTNL 120 (516)
Q Consensus 63 ~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~----------------------~~~l 120 (516)
.+++++||+||++||++|+.+.|.++++++++.+.+ +.+.++.|+.+.+. +..+
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESG----KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRL 91 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcC----CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHH
Confidence 346899999999999999999999999999886431 24666666654221 2467
Q ss_pred HHhCCCCccCeEEEec-CCcc
Q 010178 121 CDKFSVGHYPMLLWGS-PSKF 140 (516)
Q Consensus 121 ~~~~~I~~~PTl~~f~-~g~~ 140 (516)
++.|+|.++||++++. +|++
T Consensus 92 ~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 92 NRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHcCCCCCCEEEEECCCCCE
Confidence 8899999999999985 5544
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.16 E-value=1.4e-10 Score=112.15 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=72.0
Q ss_pred CeEEEEEec---CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccC
Q 010178 66 TYAVVEFFA---NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVA 142 (516)
Q Consensus 66 k~vlV~FyA---~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~ 142 (516)
...++.|++ +|||+|+.+.|.++++++.+. .+.+..++++.+++++++++|+|.++||+++|++|+..
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--------~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~- 90 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--------KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG- 90 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--------CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee-
Confidence 456778999 999999999999999999883 24444455545679999999999999999999887421
Q ss_pred CCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 143 ~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
-..+.|..+.+.+.+||+..++
T Consensus 91 -----------~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 91 -----------GIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred -----------EEEEeecCCHHHHHHHHHHHHH
Confidence 1357788888999999988764
No 79
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.12 E-value=4.5e-10 Score=104.91 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------cccHHHHH
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------KINTNLCD 122 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---------------------d~~~~l~~ 122 (516)
++++++|+||++||++|+++.|.++++++. .+.++.|+.+. |.+..+.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~ 131 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGL 131 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHH
Confidence 358999999999999999999999988753 14444444311 23456778
Q ss_pred hCCCCccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 123 ~~~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
.|++.++|+.+++ ++|++ +..+.|..+.+++.++|++.+.
T Consensus 132 ~~~v~~~P~~~~id~~G~i-------------~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 132 DLGVYGAPETFLVDGNGVI-------------LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hcCCeeCCeEEEEcCCceE-------------EEEEeccCCHHHHHHHHHHHhh
Confidence 8999999966665 55543 3456788999999999988764
No 80
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.11 E-value=2.7e-10 Score=125.29 Aligned_cols=103 Identities=14% Similarity=0.353 Sum_probs=80.1
Q ss_pred CcccHHHHHhc--CCCCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhC
Q 010178 52 NATNFDAVLRD--TPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKF 124 (516)
Q Consensus 52 ~~~~f~~~l~~--~~~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~ 124 (516)
+.+++++.+.. .++|+++|+|||+||++|+.+.|.. .++.+.++ .+.++.+|++.+ ++.+++++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEECCCCChhhHHHHHHc
Confidence 45777777754 3368999999999999999998875 67777774 377889998643 457899999
Q ss_pred CCCccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 125 SVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 125 ~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
+|.++||+++|+ +|+.. ....+.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i-----------~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEI-----------PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCc-----------ccccccCCCCHHHHHHHHHHh
Confidence 999999999996 44321 124567889999999999864
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.11 E-value=4e-10 Score=112.60 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc---------ccHHHHHhCCCCc
Q 010178 58 AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGH 128 (516)
Q Consensus 58 ~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~~~I~~ 128 (516)
..+.+..++++||+|||+||++|+.++|.++++++++. +.+..|+.+.+ .+..++++|||.+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---------~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~ 229 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---------IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT 229 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---------cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc
Confidence 44555557899999999999999999999999999984 45555555332 2457899999999
Q ss_pred cCeEEEecC-CcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 129 YPMLLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 129 ~PTl~~f~~-g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+||++++.+ |+. ......|..+.++|.+.|.....
T Consensus 230 vPtl~Lv~~~~~~------------v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 230 VPAVFLADPDPNQ------------FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCeEEEEECCCCE------------EEEEEeCCCCHHHHHHHHHHHhc
Confidence 999999875 321 11234588999999998876544
No 82
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.10 E-value=2.7e-10 Score=102.95 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=57.8
Q ss_pred cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCC-CCCCeEEEEEEeccccc-----------------------c
Q 010178 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNA-AHPGIILMTRVDCALKI-----------------------N 117 (516)
Q Consensus 62 ~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~-~~~~~v~~~~VDc~~d~-----------------------~ 117 (516)
+.++++++|+|||+||++|++++|.++++++++++... .....+.++.|+.+.+. .
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 34568999999999999999999999999988764210 00124788888754211 1
Q ss_pred HHHHHhCCCCccCeEEEec-CCcc
Q 010178 118 TNLCDKFSVGHYPMLLWGS-PSKF 140 (516)
Q Consensus 118 ~~l~~~~~I~~~PTl~~f~-~g~~ 140 (516)
..+.+.|+|.++||++++. +|++
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcE
Confidence 3578899999999999885 4543
No 83
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=4.5e-10 Score=100.01 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=57.5
Q ss_pred hcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc-----------------------c
Q 010178 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-----------------------N 117 (516)
Q Consensus 61 ~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~-----------------------~ 117 (516)
.+.+++++||+|||+||++|+.++|.++++++.+++.. ..+.++.|+.+.+. .
T Consensus 13 ~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~----~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 88 (132)
T cd02964 13 SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEG----KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELR 88 (132)
T ss_pred HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcC----CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHH
Confidence 33456899999999999999999999999999987431 24667777654321 1
Q ss_pred HHHHHhCCCCccCeEEEec-CCcc
Q 010178 118 TNLCDKFSVGHYPMLLWGS-PSKF 140 (516)
Q Consensus 118 ~~l~~~~~I~~~PTl~~f~-~g~~ 140 (516)
..+.+.|+|.++||++++. +|++
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCE
Confidence 3567789999999999885 5544
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=99.06 E-value=6e-10 Score=106.17 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=71.4
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+.++|++.+..+. +.+++.|||+||++|+.+.|.+.++++++. .+.|+.||.+ |+|.++||
T Consensus 5 ~~ee~~~~i~~~~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~~~F~~V~~d----------~~V~~vPt 65 (204)
T PTZ00062 5 KKEEKDKLIESNT-GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------SLEFYVVNLA----------DANNEYGV 65 (204)
T ss_pred CHHHHHHHHhcCC-CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------CcEEEEEccc----------cCcccceE
Confidence 4567777776432 457999999999999999999999999984 4999999952 99999999
Q ss_pred EEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+++|.+|+.. .++.| .++..|.+++.++.+
T Consensus 66 fv~~~~g~~i-------------~r~~G-~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 66 FEFYQNSQLI-------------NSLEG-CNTSTLVSFIRGWAQ 95 (204)
T ss_pred EEEEECCEEE-------------eeeeC-CCHHHHHHHHHHHcC
Confidence 9999988543 44554 456677777766654
No 85
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.05 E-value=5.4e-10 Score=98.56 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc---------------------ccccHHHHH
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---------------------LKINTNLCD 122 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~---------------------~d~~~~l~~ 122 (516)
++++++|+|||+||++|+.+.|.++++++.+. +.++.|+.+ .|.+..+++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---------~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---------VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---------cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 46899999999999999999999999987752 455555421 134567889
Q ss_pred hCCCCccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHH
Q 010178 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGL 166 (516)
Q Consensus 123 ~~~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L 166 (516)
.|+|.++|+.+++ ++|++ +..+.|..+.+.|
T Consensus 95 ~~~v~~~P~~~~ld~~G~v-------------~~~~~G~~~~~~~ 126 (127)
T cd03010 95 DLGVYGVPETFLIDGDGII-------------RYKHVGPLTPEVW 126 (127)
T ss_pred hcCCCCCCeEEEECCCceE-------------EEEEeccCChHhc
Confidence 9999999966655 46543 3456677666543
No 86
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.05 E-value=4.1e-10 Score=96.94 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=61.1
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc------------------cHHHHHhCC
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI------------------NTNLCDKFS 125 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~------------------~~~l~~~~~ 125 (516)
.+++++|.||++||++|+.+.+.+.+...-.... ...+.++.++++.+. +.++.+.||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL----KDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE----HCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh----hcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 4689999999999999999999998654422110 024677777765322 246899999
Q ss_pred CCccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 126 VGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 126 I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
|+++||++++. +| +.+..+.|..+.++|.+++
T Consensus 80 v~gtPt~~~~d~~G-------------~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDG-------------KIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTS-------------CEEEEEESS--HHHHHHHH
T ss_pred CCccCEEEEEcCCC-------------CEEEEecCCCCHHHHHhhC
Confidence 99999999985 44 3345678999999998865
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=9.3e-10 Score=91.86 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=54.0
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc-----------------------ccHHHH
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------------------INTNLC 121 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d-----------------------~~~~l~ 121 (516)
||+++|.|||+||++|+++.|.+.++.+.+++ + +.+.|+.|+++.+ .+..+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~----~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-K----DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-T----TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-C----CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 48899999999999999999999999999984 2 4688888887532 134578
Q ss_pred HhCCCCccCeEEEecC
Q 010178 122 DKFSVGHYPMLLWGSP 137 (516)
Q Consensus 122 ~~~~I~~~PTl~~f~~ 137 (516)
+.|+|.++|+++++.+
T Consensus 76 ~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 76 KKYGINGIPTLVLLDP 91 (95)
T ss_dssp HHTT-TSSSEEEEEET
T ss_pred HHCCCCcCCEEEEECC
Confidence 8999999999998753
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.99 E-value=2.3e-09 Score=103.72 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=66.8
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCC
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~ 145 (516)
..+++.||++||++|+.+.|.+++++... +.+.+..+|. +++++++++|+|.++||++++..|+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--------~~i~~~~vD~--~~~~~~~~~~~V~~vPtl~i~~~~~------ 197 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALAN--------DKILGEMIEA--NENPDLAEKYGVMSVPKIVINKGVE------ 197 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhc--------CceEEEEEeC--CCCHHHHHHhCCccCCEEEEecCCE------
Confidence 44566699999999999999999998874 3588888996 5689999999999999999976541
Q ss_pred CCCccccchhhccccCCHHHHHHHHHH
Q 010178 146 EPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 146 ~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
.+.|..+.++|.++|.+
T Consensus 198 ----------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 ----------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred ----------EEECCCCHHHHHHHHHh
Confidence 16678888899988864
No 89
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.97 E-value=2e-09 Score=86.50 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=46.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
-|+||++||++|+.+.|.++++++++. ..+.+..|| +.+.+.+|||.++||+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~-------~~~~~~~v~-----~~~~a~~~~v~~vPti~i 55 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG-------IDAEFEKVT-----DMNEILEAGVTATPGVAV 55 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC-------CCeEEEEeC-----CHHHHHHcCCCcCCEEEE
Confidence 389999999999999999999999985 347787777 244578999999999998
No 90
>PHA02125 thioredoxin-like protein
Probab=98.94 E-value=2.8e-09 Score=85.41 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
+|.|||+||++|+.+.|.+++++ +.++.||+ +++.+++++|+|+++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------------~~~~~vd~--~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------------YTYVDVDT--DEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------------heEEeeeC--CCCHHHHHHcCCceeCeEE
Confidence 78999999999999999987542 34677886 5688999999999999997
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=5.5e-09 Score=122.39 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc---c----------------------cccH
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---L----------------------KINT 118 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~---~----------------------d~~~ 118 (516)
+++++||+|||+||++|+.+.|.+++++++|++. .+.|+.|.+. . |.+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~------~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ------PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC------CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 4689999999999999999999999999999742 3677766421 1 2345
Q ss_pred HHHHhCCCCccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 119 NLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 119 ~l~~~~~I~~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
.+.++|+|.++||++++ ++|++ +..+.|....+.|.++|.+.+
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~i-------------v~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKL-------------IAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeE-------------EEEEecccCHHHHHHHHHHHH
Confidence 67889999999999998 46643 345778888899999988765
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.91 E-value=5.7e-09 Score=91.27 Aligned_cols=95 Identities=19% Similarity=0.371 Sum_probs=66.8
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc----------------
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---------------- 113 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~---------------- 113 (516)
.++++.+.....+ +++++|.||++||++|+.+.|.+.++++.+. +..+.+|-.
T Consensus 7 ~~~g~~~~~~~~~--~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---------~i~i~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd03011 7 TLDGEQFDLESLS--GKPVLVYFWATWCPVCRFTSPTVNQLAADYP---------VVSVALRSGDDGAVARFMQKKGYGF 75 (123)
T ss_pred cCCCCEeeHHHhC--CCEEEEEEECCcChhhhhhChHHHHHHhhCC---------EEEEEccCCCHHHHHHHHHHcCCCc
Confidence 4455555544333 4889999999999999999999999988742 222222210
Q ss_pred ---ccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHH
Q 010178 114 ---LKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (516)
Q Consensus 114 ---~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~ 168 (516)
.+.+..++++|+|.++||++++.++.+ ...+.|..+.++|.+
T Consensus 76 ~~~~d~~~~~~~~~~i~~~P~~~vid~~gi-------------~~~~~g~~~~~~~~~ 120 (123)
T cd03011 76 PVINDPDGVISARWGVSVTPAIVIVDPGGI-------------VFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEECCCcHHHHhCCCCcccEEEEEcCCCe-------------EEEEeccCCHHHHHh
Confidence 134568999999999999999876532 234667788877754
No 93
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.89 E-value=1e-08 Score=96.14 Aligned_cols=83 Identities=10% Similarity=-0.029 Sum_probs=57.7
Q ss_pred CCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEE------EEEeccc----------------------
Q 010178 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILM------TRVDCAL---------------------- 114 (516)
Q Consensus 63 ~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~------~~VDc~~---------------------- 114 (516)
.+||+.||+|||+||++|+..+|.++++++.- +.+ ..||.++
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~----------~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK----------FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcC----------CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCc
Confidence 34799999999999999999999999996531 222 3344321
Q ss_pred -----cccHHHHHhCCCCccCeE-EEe-cCCcccCCCCCCCccccchhhccccCCHHHHHH
Q 010178 115 -----KINTNLCDKFSVGHYPML-LWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (516)
Q Consensus 115 -----d~~~~l~~~~~I~~~PTl-~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~ 168 (516)
|.+..+...|||.++|+. +++ ++| .....+.|..+.+++.+
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~G-------------kVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTG-------------KVKFVKEGALSDSDIQT 174 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCC-------------cEEEEEeCCCCHHHHHH
Confidence 123456778999999866 454 344 33456778888877766
No 94
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.85 E-value=7.6e-09 Score=80.66 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
++.|+++||++|+.+.|.+++++... +.+.+..+|. +++++++++|||.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--------~~i~~~~id~--~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--------PNISAEMIDA--AEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--------CceEEEEEEc--ccCHhHHHHcCCcccCEEEE
Confidence 78899999999999999999998764 3488999997 46788999999999999976
No 95
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.83 E-value=1.3e-08 Score=89.73 Aligned_cols=70 Identities=10% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------cccH
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~ 118 (516)
++++++|+||++||++|++..|.++++++++++. .+.++.|+... |.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD------GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC------CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 4589999999999999999999999999999752 37777775410 2344
Q ss_pred HHHHhCCCCccCeEEEec-CCc
Q 010178 119 NLCDKFSVGHYPMLLWGS-PSK 139 (516)
Q Consensus 119 ~l~~~~~I~~~PTl~~f~-~g~ 139 (516)
.+.+.|++.++|+++++. +|+
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~ 117 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGN 117 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCc
Confidence 577789999999998884 453
No 96
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.82 E-value=1.7e-08 Score=88.89 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=56.0
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH-------
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD------- 122 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~-~--~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~------- 122 (516)
++.++....+ +|++||+|+|+||++|+.+.+. | .++++.++ ..+.++.+|.+ +++++.+
T Consensus 5 ~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~~--~~~~~~~~~~~~~~ 73 (124)
T cd02955 5 EEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDRE--ERPDVDKIYMNAAQ 73 (124)
T ss_pred HHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeCC--cCcHHHHHHHHHHH
Confidence 3445555544 5899999999999999999874 3 35666664 24788889964 4566554
Q ss_pred -hCCCCccCeEEEec-CCccc
Q 010178 123 -KFSVGHYPMLLWGS-PSKFV 141 (516)
Q Consensus 123 -~~~I~~~PTl~~f~-~g~~~ 141 (516)
.||+.|+||++++. +|+..
T Consensus 74 ~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 74 AMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred HhcCCCCCCEEEEECCCCCEE
Confidence 36999999999985 45433
No 97
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.78 E-value=4.4e-08 Score=104.59 Aligned_cols=107 Identities=20% Similarity=0.346 Sum_probs=80.7
Q ss_pred eecCcc-cHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHH-HHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhC
Q 010178 49 VELNAT-NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE-KVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKF 124 (516)
Q Consensus 49 ~~L~~~-~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~-~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~ 124 (516)
..++.. .+++.+.++++|+|+|+|||+||-.||.+.+..- +.....+- ..+...++|.+.+ ++.++.++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~------~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL------QDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc------CCeEEEEeeecCCCHHHHHHHHHc
Confidence 445555 8899999988889999999999999999988642 33222221 3488899998743 345677899
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
|+-+.|+++||+++. ++...+.|..+++.+++++++.
T Consensus 531 ~~~G~P~~~ff~~~g------------~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 GVFGVPTYLFFGPQG------------SEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCCEEEEECCCC------------CcCcCCcceecHHHHHHHHHHh
Confidence 999999999998431 2223378999999999999764
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.78 E-value=1.2e-08 Score=88.05 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=44.9
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEE-eccccccHHHHHhCCCCccCeE
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV-DCALKINTNLCDKFSVGHYPML 132 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~V-Dc~~d~~~~l~~~~~I~~~PTl 132 (516)
+++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ |.+.++..++++++++..+|++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-------~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-------WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-------CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 58899999999999999999999999888752 2444444 3333344556777777777765
No 99
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.78 E-value=2.1e-08 Score=95.86 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=48.7
Q ss_pred cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------cccHHHHHhCCCCccCeE
Q 010178 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDKFSVGHYPML 132 (516)
Q Consensus 62 ~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---------d~~~~l~~~~~I~~~PTl 132 (516)
+.+++++||+|||+||++|+.++|.++++++++.+. .+.|+.|+|+. ++....++++++. ||.+
T Consensus 36 ~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~------g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpvl 108 (199)
T PTZ00056 36 SLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL------GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNFF 108 (199)
T ss_pred HhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC------ceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-ceee
Confidence 335689999999999999999999999999999753 48889998732 1234456677763 5543
No 100
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.78 E-value=3.8e-08 Score=85.33 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=77.4
Q ss_pred cHHHHHh--cCCCCeEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCcc
Q 010178 55 NFDAVLR--DTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (516)
Q Consensus 55 ~f~~~l~--~~~~k~vlV~FyA~WC~~C~~~~P~-~--~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~ 129 (516)
+|++.+. ...+|+++|+|+++||++|+.+... | .++.+.++ ....+..+|.+..+...+++.|++.++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~~v~~~~d~~~~e~~~~~~~~~~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------ENFIFWQCDIDSSEGQRFLQSYKVDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hCEEEEEecCCCccHHHHHHHhCccCC
Confidence 4555443 2336899999999999999999764 4 45666664 247778888866577889999999999
Q ss_pred CeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
|++.++.+. ++..+..+.|..+.+++...|++.+
T Consensus 78 P~~~~i~~~-----------~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 78 PHIAIIDPR-----------TGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CeEEEEeCc-----------cCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 999998641 1145567889999999999888754
No 101
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.77 E-value=2.5e-08 Score=84.68 Aligned_cols=68 Identities=22% Similarity=0.487 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc---------------------ccHHHHHh
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------------------INTNLCDK 123 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d---------------------~~~~l~~~ 123 (516)
+++++|.||++||++|+...+.+.++.+++.+ ..+.++.|+++.+ .+..+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~------~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD------DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKA 92 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC------CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHh
Confidence 58899999999999999999999999999863 3488999998531 12678999
Q ss_pred CCCCccCeEEEec-CC
Q 010178 124 FSVGHYPMLLWGS-PS 138 (516)
Q Consensus 124 ~~I~~~PTl~~f~-~g 138 (516)
|++.++|+++++. +|
T Consensus 93 ~~~~~~P~~~l~d~~g 108 (116)
T cd02966 93 YGVRGLPTTFLIDRDG 108 (116)
T ss_pred cCcCccceEEEECCCC
Confidence 9999999998885 44
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.75 E-value=3.5e-08 Score=96.26 Aligned_cols=117 Identities=9% Similarity=0.112 Sum_probs=72.4
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------cc---cHHH
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------KI---NTNL 120 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~------d~---~~~l 120 (516)
.++++.+. +.+.+++++||+|||+||++|+.+.|.++++++++++. .+.++.|+|+. +. ..+.
T Consensus 86 d~~G~~vs--Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~------Gv~VIgV~~d~~~~~e~~s~~ei~~f 157 (236)
T PLN02399 86 DIDGKDVA--LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ------GFEILAFPCNQFGGQEPGSNPEIKQF 157 (236)
T ss_pred CCCCCEEe--HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC------CcEEEEEecccccccCCCCHHHHHHH
Confidence 34444332 33335689999999999999999999999999999753 38888898741 11 1223
Q ss_pred H-HhCCCCccCeEEEe-cCCccc-----------CC-----------CCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 121 C-DKFSVGHYPMLLWG-SPSKFV-----------AG-----------SWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 121 ~-~~~~I~~~PTl~~f-~~g~~~-----------~~-----------~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+ +++++. ||.+.-. .+|... .+ ......+++.+..+.|..+.++|.+.|++.+.
T Consensus 158 ~~~~~g~~-fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 158 ACTRFKAE-FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred HHHhcCCC-CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2 455554 5532111 111100 00 00011234566778898999999999887763
No 103
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.73 E-value=3.2e-08 Score=89.36 Aligned_cols=82 Identities=22% Similarity=0.415 Sum_probs=60.5
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecC-CChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------- 114 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~-WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--------------- 114 (516)
++++.+. +.+.++++++|.||++ |||+|+..+|.+.++++.+++.+ +.++.|....
T Consensus 16 ~~g~~~~--l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~------v~~v~v~~~~~~~~~~~~~~~~~~~ 87 (146)
T PF08534_consen 16 LDGKPVS--LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG------VDVVGVSSDDDPPVREFLKKYGINF 87 (146)
T ss_dssp TTSEEEE--GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT------CEEEEEEESSSHHHHHHHHHTTTTS
T ss_pred CCCCEec--HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc------eEEEEecccCCHHHHHHHHhhCCCc
Confidence 4444444 3444568999999999 99999999999999999987533 5666665432
Q ss_pred ----cccHHHHHhCCCC---------ccCeEEEe-cCCcc
Q 010178 115 ----KINTNLCDKFSVG---------HYPMLLWG-SPSKF 140 (516)
Q Consensus 115 ----d~~~~l~~~~~I~---------~~PTl~~f-~~g~~ 140 (516)
|.+..+.++|++. ++|+++++ ++|++
T Consensus 88 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 88 PVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp EEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred eEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence 3455788899988 99988776 55544
No 104
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.69 E-value=5.6e-09 Score=98.85 Aligned_cols=102 Identities=21% Similarity=0.449 Sum_probs=87.3
Q ss_pred CcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCC
Q 010178 46 DHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (516)
Q Consensus 46 ~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~ 125 (516)
..++.++.+|+...+.. . ++++|+|+|||.|+...|+|+.+|.--.+. .|.++.||.+ .|+-+.-+|-
T Consensus 24 s~~~~~~eenw~~~l~g---e-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL------~v~va~VDvt--~npgLsGRF~ 91 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLTG---E-WMIEFGAPWCPSCSDLIPHLENFATVSLDL------GVKVAKVDVT--TNPGLSGRFL 91 (248)
T ss_pred ceeEEecccchhhhhch---H-HHHHhcCCCCccccchHHHHhccCCccCCC------ceeEEEEEEE--eccccceeeE
Confidence 36888999999998865 3 599999999999999999999988754442 3899999986 5889999999
Q ss_pred CCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 126 VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 126 I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
|...|||+....|.+ .+|.|.|+..+++.|+..+
T Consensus 92 vtaLptIYHvkDGeF--------------rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEF--------------RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeecccc--------------ccccCcccchhHHHHHHhh
Confidence 999999999888755 4689999999999999754
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.68 E-value=1.3e-07 Score=89.60 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=49.3
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEe-------------ccc---cccHHHHHhCCCC
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD-------------CAL---KINTNLCDKFSVG 127 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VD-------------c~~---d~~~~l~~~~~I~ 127 (516)
++++++|+|||+||++|+.+.|.+.++.+... ..+.++..| .+. ..+.++.+.|+|.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-------~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-------TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-------CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC
Confidence 46889999999999999999999999887642 123333311 000 1145678899999
Q ss_pred ccCeEEEe-cCCcc
Q 010178 128 HYPMLLWG-SPSKF 140 (516)
Q Consensus 128 ~~PTl~~f-~~g~~ 140 (516)
++|+.+++ ++|++
T Consensus 146 ~~P~~~lID~~G~I 159 (189)
T TIGR02661 146 KIPYGVLLDQDGKI 159 (189)
T ss_pred ccceEEEECCCCeE
Confidence 99987776 45544
No 106
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-07 Score=89.10 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=74.2
Q ss_pred Ccceec-CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 46 DHAVEL-NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 46 ~~v~~L-~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
..+.-+ +.+.+++.+..++.+.++|+|||.|-+.|++++|.|.+|..+|+. +.++|++||. ...++.+.+|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~------~~lkFGkvDi--Grfpd~a~kf 195 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN------NLLKFGKVDI--GRFPDVAAKF 195 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC------CCCcccceee--ccCcChHHhe
Confidence 345556 667778888877778899999999999999999999999999985 4599999997 4678899999
Q ss_pred CC------CccCeEEEecCCccc
Q 010178 125 SV------GHYPMLLWGSPSKFV 141 (516)
Q Consensus 125 ~I------~~~PTl~~f~~g~~~ 141 (516)
+| +..||+.+|..|+-.
T Consensus 196 ris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred eeccCcccccCCeEEEEccchhh
Confidence 87 468999999988643
No 107
>PLN02412 probable glutathione peroxidase
Probab=98.63 E-value=1.2e-07 Score=88.18 Aligned_cols=107 Identities=9% Similarity=0.111 Sum_probs=70.8
Q ss_pred cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------cccHH----HHHhCCCCccCe
Q 010178 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------KINTN----LCDKFSVGHYPM 131 (516)
Q Consensus 62 ~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~------d~~~~----l~~~~~I~~~PT 131 (516)
+.+++++||+|||+||++|+...|.+++++++|.+. .+.++.|+++. +...+ .++++++. ||.
T Consensus 26 ~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~------g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpv 98 (167)
T PLN02412 26 QYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ------GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPI 98 (167)
T ss_pred HhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC------CcEEEEecccccccCCCCCHHHHHHHHHHccCCC-Cce
Confidence 334688999999999999999999999999999853 38899998742 12222 24666775 776
Q ss_pred EEEe-cCC-cccC---------------------CCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 132 LLWG-SPS-KFVA---------------------GSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 132 l~~f-~~g-~~~~---------------------~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+.-+ .+| .... .......+++.+..+.|..+.++|.+.|++.+.
T Consensus 99 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 99 FDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred EeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 5422 222 1100 000011234555667888999999888887654
No 108
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.62 E-value=2.1e-07 Score=77.15 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=54.1
Q ss_pred HhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 60 l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
+.+-.+..-+..|+++||++|....+.++++++.+ +.+.+..+|. ++.++++.+|||.++||+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--------~~i~~~~vd~--~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN--------PNIEHEMIDG--ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--------CCceEEEEEh--HhCHHHHHHcCCccCCEEEE
Confidence 33333455688899999999999999999999876 3488999996 46789999999999999975
No 109
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.62 E-value=3.2e-07 Score=81.10 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=84.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCC---ChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANW---CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~W---C~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
...++..++++.+... . .-|.|.+.- ++.+-..+=.+++++++|.+ ..+.+++||+ |++++++.+|
T Consensus 19 ~~~~~~~~~~~~~~~~--~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~------~~v~~akVDi--D~~~~LA~~f 87 (132)
T PRK11509 19 WTPVSESRLDDWLTQA--P-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD------YTWQVAIADL--EQSEAIGDRF 87 (132)
T ss_pred CCccccccHHHHHhCC--C-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC------CceEEEEEEC--CCCHHHHHHc
Confidence 3456678888888764 2 345566543 67777888899999999963 3499999997 5789999999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccC
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~ 177 (516)
||+++||+++|++|+. +..+.|.++.+++.++|.+.+.+.
T Consensus 88 gV~siPTLl~FkdGk~-------------v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 88 GVFRFPATLVFTGGNY-------------RGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCccCCEEEEEECCEE-------------EEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999999999999854 355789999999999999988653
No 110
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.61 E-value=9.3e-08 Score=87.30 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=38.2
Q ss_pred cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 62 ~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
+.++++++|+|||+||+ |+..+|.++++++++.+. .+.++.|+++
T Consensus 19 ~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~------~~~vv~v~~~ 63 (152)
T cd00340 19 KYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR------GLVVLGFPCN 63 (152)
T ss_pred HhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC------CEEEEEeccC
Confidence 33468999999999999 999999999999999752 3888888763
No 111
>smart00594 UAS UAS domain.
Probab=98.58 E-value=3.1e-07 Score=80.77 Aligned_cols=104 Identities=12% Similarity=0.196 Sum_probs=75.6
Q ss_pred cccHHHHHhcC--CCCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 53 ATNFDAVLRDT--PATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 53 ~~~f~~~l~~~--~~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
..+|++.+... .+|+++|+|+++||+.|+.+.-.. .++.+.++ ..+.+..+|.+..+..+++..|+++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~fv~~~~dv~~~eg~~l~~~~~~~ 85 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------ENFIFWQVDVDTSEGQRVSQFYKLD 85 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cCEEEEEecCCChhHHHHHHhcCcC
Confidence 34666655332 357899999999999999987643 34555554 2478888898878888999999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++|++.++.+..-. .....+..+.|..++++|+.++
T Consensus 86 ~~P~~~~l~~~~g~-------~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 86 SFPYVAIVDPRTGQ-------RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCEEEEEecCCCc-------eeEEEeccccCCCCHHHHHHhh
Confidence 99999998542100 0013456688999999998875
No 112
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.58 E-value=2.9e-07 Score=84.08 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=39.7
Q ss_pred hcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010178 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (516)
Q Consensus 61 ~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc 112 (516)
.+.+++++||.|||+||++|+...|.++++++++++. .+.++.|+|
T Consensus 18 ~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~------~~~v~~i~~ 63 (153)
T TIGR02540 18 EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS------HFNVLAFPC 63 (153)
T ss_pred HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC------CeEEEEEec
Confidence 3445688999999999999999999999999999753 488999987
No 113
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.53 E-value=1.8e-07 Score=76.22 Aligned_cols=63 Identities=25% Similarity=0.590 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 137 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~ 137 (516)
++++||+|+|+||++|+.+...+ .++.+.+. ..+.++.||.+. .+... ++..+++|+++++.+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-------~~fv~v~vd~~~-~~~~~--~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-------KNFVLVKVDVDD-EDPNA--QFDRQGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-------HCSEEEEEETTT-HHHHH--HHHHCSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-------CCEEEEEEEcCC-CChhH--HhCCccCCEEEEeCC
Confidence 59999999999999999998776 44555443 247889999853 23333 222277999999753
No 114
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.42 E-value=1.1e-06 Score=82.82 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=40.8
Q ss_pred ecCcccHHHHHhcCCCCeE-EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 50 ELNATNFDAVLRDTPATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~v-lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
.++++.+. +.+.+++++ |+.+||+|||+|+.++|.++++++++.+. .+.++.|+|+
T Consensus 27 d~~G~~vs--Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~------gv~vv~vs~~ 83 (183)
T PTZ00256 27 DIDGQLVQ--LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ------GLEILAFPCN 83 (183)
T ss_pred cCCCCEEe--HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC------CcEEEEEecc
Confidence 34444433 333345654 45669999999999999999999999753 3888899874
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.40 E-value=2e-06 Score=79.98 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=70.5
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------------------------cc
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------------KI 116 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---------------------------d~ 116 (516)
+++++||.||++||++|....|.+.++++++.+. .+.|+.|+++. +.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~------~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~ 97 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK------GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDE 97 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC------CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECC
Confidence 3588999999999999999999999999999742 47888887642 12
Q ss_pred cHHHHHhCCCCccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 117 NTNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+..+++.|+|...|+++++. +|++....... .....+.+..+.+++.+.|+..+.
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 98 TQEVAKAYGAACTPDFFLFDPDGKLVYRGRID----DSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred chHHHHHcCCCcCCcEEEECCCCeEEEeeccc----CCcccccccccHHHHHHHHHHHHc
Confidence 34567789999999888874 55443210000 000011234577888888887764
No 116
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.33 E-value=1.2e-06 Score=77.29 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=45.4
Q ss_pred cHHHHHh--cCCCCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccc-cccHHHHHhCCCCc
Q 010178 55 NFDAVLR--DTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCAL-KINTNLCDKFSVGH 128 (516)
Q Consensus 55 ~f~~~l~--~~~~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~-d~~~~l~~~~~I~~ 128 (516)
+|++.+. ...+|+++|+|+++||++|+.+.... .++.+..+ ..+.++.++.+. +.+.. ..+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~Fv~V~l~~d~td~~~~---~~g-~~ 79 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDFIMLNLVHETTDKNLS---PDG-QY 79 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCeEEEEEEeccCCCCcC---ccC-cc
Confidence 4555442 33469999999999999999998754 23444443 125555666431 11221 234 78
Q ss_pred cCeEEEecC
Q 010178 129 YPMLLWGSP 137 (516)
Q Consensus 129 ~PTl~~f~~ 137 (516)
+||++|+.+
T Consensus 80 vPtivFld~ 88 (130)
T cd02960 80 VPRIMFVDP 88 (130)
T ss_pred cCeEEEECC
Confidence 999999854
No 117
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.31 E-value=3.4e-06 Score=70.79 Aligned_cols=66 Identities=30% Similarity=0.599 Sum_probs=56.6
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCC--CCccCeEEEecCC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS--VGHYPMLLWGSPS 138 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~--I~~~PTl~~f~~g 138 (516)
+++++|.||++||++|+.+.|.+.++++.+.. .+.+..+|.. +.+..+...|+ +..+|++.++.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-------~~~~~~i~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-------DVEVVAVNVD-DENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-------CcEEEEEECC-CCChHHHHHHhhhhccCCeEEEEeCc
Confidence 47889999999999999999999999999862 4788888873 25788999999 9999999987665
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.25 E-value=4.1e-06 Score=72.94 Aligned_cols=68 Identities=16% Similarity=0.434 Sum_probs=55.4
Q ss_pred CCCeEEEEEecC-CChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------cccHHHHHh
Q 010178 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDK 123 (516)
Q Consensus 64 ~~k~vlV~FyA~-WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~l~~~ 123 (516)
.+++++|.||++ ||++|+...+.++++.++++.. .+.++.|..+. |.+..+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~------~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK------GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT------TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc------eEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 468999999999 9999999999999999999753 47888887642 235567888
Q ss_pred CCCC------ccCeEEEecC
Q 010178 124 FSVG------HYPMLLWGSP 137 (516)
Q Consensus 124 ~~I~------~~PTl~~f~~ 137 (516)
|++. .+|+++++.+
T Consensus 98 ~~~~~~~~~~~~p~~~lid~ 117 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDP 117 (124)
T ss_dssp TTCEETTTSEESEEEEEEET
T ss_pred cCCccccCCceEeEEEEECC
Confidence 9988 8898888754
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.24 E-value=2.2e-06 Score=77.33 Aligned_cols=69 Identities=23% Similarity=0.455 Sum_probs=54.0
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc-----------------------ccHHHH
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------------------INTNLC 121 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d-----------------------~~~~l~ 121 (516)
+|.|.++|-|.|||+||.|-|.+.++.+.+++.+. .+-++-|+-+.+ .-++++
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~----~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAA----PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCC----ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 58999999999999999999999999999986542 355555553321 234688
Q ss_pred HhCCCCccCeEEEecC
Q 010178 122 DKFSVGHYPMLLWGSP 137 (516)
Q Consensus 122 ~~~~I~~~PTl~~f~~ 137 (516)
++|+|.++|++++..+
T Consensus 109 ~ky~v~~iP~l~i~~~ 124 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKP 124 (157)
T ss_pred HhcccCcCceeEEecC
Confidence 8999999999998643
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.23 E-value=3.5e-06 Score=75.17 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------cccHHHHHh
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDK 123 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~l~~~ 123 (516)
++++++|.|| +.||+.|....|.+.++++.+.+. .+.++.|..+. |.+..+.+.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~------~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL------GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 3588999999 589999999999999999988642 36666665432 234567778
Q ss_pred CCCCcc---------CeEEEec-CCc
Q 010178 124 FSVGHY---------PMLLWGS-PSK 139 (516)
Q Consensus 124 ~~I~~~---------PTl~~f~-~g~ 139 (516)
||+... |+++++. +|+
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~ 121 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGK 121 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCE
Confidence 888887 7777764 343
No 121
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.22 E-value=5e-06 Score=77.18 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=36.1
Q ss_pred cCCCCeEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 62 DTPATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 62 ~~~~k~vlV~FyA~W-C~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
+.++++++|+||++| |++|+.+.|.++++++++. .+.++.|+++
T Consensus 41 ~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~D 85 (167)
T PRK00522 41 DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISAD 85 (167)
T ss_pred HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeCC
Confidence 334688999999999 9999999999999998873 2667777654
No 122
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.8e-05 Score=78.40 Aligned_cols=126 Identities=16% Similarity=0.251 Sum_probs=93.3
Q ss_pred cccCcceecCcccHHHHHhcCC-CCeEEEEEecC----CChhhhhhhHHHHHHHHHhCCCCCCC-CCeEEEEEEeccccc
Q 010178 43 VEVDHAVELNATNFDAVLRDTP-ATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAH-PGIILMTRVDCALKI 116 (516)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~~~~-~k~vlV~FyA~----WC~~C~~~~P~~~~la~~~~~~~~~~-~~~v~~~~VDc~~d~ 116 (516)
..+..|+.+++++|...+...+ +..++|.|.|. -|.-|+.+..+|.-+|..+...++.. ..++.|..||. ++
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~--~e 114 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY--DE 114 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec--cc
Confidence 3467899999999999987654 34578888885 49999999999999999886544321 12789999997 56
Q ss_pred cHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
.+++.+.++++..|++++|+|.+-.. + .......++-+..+|.+.+|++....-
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~-----~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNK-----K-RSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCcccc-----c-cCccchhhhcchhHHHHHHHHHHhhhh
Confidence 89999999999999999997643211 1 112222233234599999999987653
No 123
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.20 E-value=5.9e-06 Score=78.17 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=62.7
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----------------------cccHH
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTN 119 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~~~~ 119 (516)
+++++||.|| ++||++|+...|.+.++.+++.+.+ +.++.|.++. |.+..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g------v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG------VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC------CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccH
Confidence 4688999999 9999999999999999999986432 5555555431 12446
Q ss_pred HHHhCCCC------ccCeEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 120 LCDKFSVG------HYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 120 l~~~~~I~------~~PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
+++.|||. ..|+.+++ ++|++... .+..-...++.+++++.|+
T Consensus 104 ~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~---------~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 104 LTRNFGVLIEEAGLADRGTFVIDPEGVIQAV---------EITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHhCCcccCCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHH
Confidence 77888886 35877766 45544321 0111122358888888774
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.17 E-value=9.2e-06 Score=78.52 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=70.0
Q ss_pred HHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc---------ccHHHHHhCCCC
Q 010178 57 DAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVG 127 (516)
Q Consensus 57 ~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~~~I~ 127 (516)
+..|.+..+++-|+.||.+.|+.|+.+.|.++.+++++. +.+..|+.+.. .+..+++++||.
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~ 182 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK 182 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC
Confidence 345555456788999999999999999999999999984 56666665421 357899999999
Q ss_pred ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 128 ~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
.+|+++++.++.. .-...-.|..+.++|.+-|
T Consensus 183 ~~Pal~Lv~~~~~-----------~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 183 VTPALFLVNPNTK-----------KWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred cCCEEEEEECCCC-----------eEEEEeeecCCHHHHHHhh
Confidence 9999999865420 1112235888888887644
No 125
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.15 E-value=7.5e-06 Score=60.78 Aligned_cols=60 Identities=30% Similarity=0.628 Sum_probs=47.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHH---HhCCCCccCeEEEecCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC---DKFSVGHYPMLLWGSPS 138 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~---~~~~I~~~PTl~~f~~g 138 (516)
++.||++||++|+.+.+.+.++ +... ..+.+..+|++.. .... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-------KGVKFEAVDVDED--PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-------CCcEEEEEEcCCC--hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 2222 4589999998643 3333 48999999999998765
No 126
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.12 E-value=1.3e-05 Score=74.77 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--------------------------cc
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KI 116 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~ 116 (516)
+++++||.|| ++||++|....|.++++++++.+. .+.++.|.++. |.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~------~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL------NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECC
Confidence 4588999999 899999999999999999999753 35666665532 12
Q ss_pred cHHHHHhCCCC------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 117 ~~~l~~~~~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
...+.+.|||. ..|+++++. +|++... .+......++.+++++.|++.
T Consensus 102 ~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~---------~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 102 KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHI---------TVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred chhHHHHhCCccccCCceeeEEEEECCCCeEEEE---------EecCCCCCCCHHHHHHHHHHh
Confidence 33466677876 456776664 4433211 000112235677888888654
No 127
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.09 E-value=1.7e-05 Score=75.02 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=66.5
Q ss_pred cCCCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----------------------ccc
Q 010178 62 DTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KIN 117 (516)
Q Consensus 62 ~~~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~~ 117 (516)
+.++++++|.|| +.||+.|..+.+.+.++++++.+.+ +.++.|+.+. |.+
T Consensus 28 d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g------~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 28 DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG------VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC------CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 335688999999 9999999999999999999996532 5566665432 235
Q ss_pred HHHHHhCCC----Ccc--CeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 118 TNLCDKFSV----GHY--PMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 118 ~~l~~~~~I----~~~--PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
..+++.||+ .+. |+.+++. +|++... .+......++.+++++.|..
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~---------~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAI---------EVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHHh
Confidence 678889998 356 8777774 5544321 11112334789999888854
No 128
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.08 E-value=1.4e-05 Score=76.52 Aligned_cols=96 Identities=8% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCCeEEE-EEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------ccc
Q 010178 64 PATYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (516)
Q Consensus 64 ~~k~vlV-~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~ 117 (516)
++++++| .||++||+.|..+.+.+.++++++.+.+ +.++.|+++. |.+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~------~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG------VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence 4576655 6899999999999999999999987532 5566665531 234
Q ss_pred HHHHHhCCCC------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 118 TNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 118 ~~l~~~~~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
..+++.|||. .+|+++++. +|++.. ..+....++++.++++..|+...
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~---------~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRW---------MIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEE---------EEEeCCCCCCCHHHHHHHHHHhh
Confidence 5677888884 578877774 443321 11122245689999999887643
No 129
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.07 E-value=1.2e-05 Score=62.89 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=40.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc--HHHHHhCCCCccCeEEEe
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN--TNLCDKFSVGHYPMLLWG 135 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~--~~l~~~~~I~~~PTl~~f 135 (516)
+..|+++||++|++..+.+++. .+.+..+|++.+.. .++.+.+++.++||++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 5679999999999998877641 26677788753221 236778999999999874
No 130
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.06 E-value=1.9e-05 Score=70.98 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeEEEEE-ecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 66 TYAVVEF-FANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 66 k~vlV~F-yA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
++++|.| +++||++|+...|.+.++++++.+ ..+.++.|+.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~~ 66 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGPE 66 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeCC
Confidence 4445555 699999999999999999999964 23788888764
No 131
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.05 E-value=6.4e-06 Score=77.54 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=51.6
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc------c---ccHH
Q 010178 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------K---INTN 119 (516)
Q Consensus 49 ~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~------d---~~~~ 119 (516)
..++++.+. +.+.+++++||.|||+||++|+ ..|.+++++++|++. .+.|+++.|.+ + +-.+
T Consensus 11 ~~~~G~~v~--Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~------gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 11 TTIDGEVTT--LEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ------GFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ECCCCCEEe--HHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC------CeEEEEeeccccccCCCCCHHHHHH
Confidence 344444433 3444568999999999999997 489999999999753 48999999842 1 1234
Q ss_pred HHH-hCCCCccCeE
Q 010178 120 LCD-KFSVGHYPML 132 (516)
Q Consensus 120 l~~-~~~I~~~PTl 132 (516)
.++ +|++. ||.+
T Consensus 82 f~~~~~g~~-Fpv~ 94 (183)
T PRK10606 82 YCRTTWGVT-FPMF 94 (183)
T ss_pred HHHHccCCC-ceeE
Confidence 565 67764 5644
No 132
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.4e-05 Score=66.85 Aligned_cols=88 Identities=17% Similarity=0.344 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccc--------------cccHHHHHhCCC
Q 010178 64 PATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCAL--------------KINTNLCDKFSV 126 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~--------------d~~~~l~~~~~I 126 (516)
.++..+++|-++.|+.|.++.... +++.+.+. +.+.++.++.+. ....++++.|+|
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-------~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-------EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-------hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 358899999999999999998766 34555554 346777776542 123589999999
Q ss_pred CccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 127 ~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
+++||++||... ++.+..+.|....++++.-+
T Consensus 114 rstPtfvFfdk~------------Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 114 RSTPTFVFFDKT------------GKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred ccCceEEEEcCC------------CCEEEecCCCCCHHHHHHHH
Confidence 999999998532 14455677888888876644
No 133
>PRK15000 peroxidase; Provisional
Probab=97.97 E-value=3.3e-05 Score=73.93 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=64.5
Q ss_pred CCCeEEEEEec-CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--------------------------cc
Q 010178 64 PATYAVVEFFA-NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KI 116 (516)
Q Consensus 64 ~~k~vlV~FyA-~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~ 116 (516)
++++++|.||+ .||+.|..+.|.+.++++++.+.+ +.++.|.++. |.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g------~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~ 106 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG------VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADV 106 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECC
Confidence 35899999999 599999999999999999997533 6667676542 12
Q ss_pred cHHHHHhCCCC------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 117 ~~~l~~~~~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+..+++.|||. ++|+.+++. +|++.. ..+....-+++.++++..++.
T Consensus 107 ~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~---------~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 107 KREIQKAYGIEHPDEGVALRGSFLIDANGIVRH---------QVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred CcHHHHHcCCccCCCCcEEeEEEEECCCCEEEE---------EEecCCCCCCCHHHHHHHHHH
Confidence 33566777876 678777664 444331 111112335788999888864
No 134
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.96 E-value=3.1e-05 Score=70.59 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=35.9
Q ss_pred CCCCeEEEEEecC-CChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 63 TPATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 63 ~~~k~vlV~FyA~-WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
.+++++||.||++ ||+.|....+.+.++++++++. .+.++.|+.+
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~------~v~vi~Is~d 73 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA------GVVVLGISTD 73 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 3457899999986 6888999999999999998753 3677777653
No 135
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.90 E-value=5.5e-05 Score=76.02 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=75.8
Q ss_pred cccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHH------HHHHHHHhCCCCCCCCCeEEEEEEeccccc
Q 010178 43 VEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ------YEKVARLFNGPNAAHPGIILMTRVDCALKI 116 (516)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~------~~~la~~~~~~~~~~~~~v~~~~VDc~~d~ 116 (516)
...+.|+.|+..||++++.+. +..+|.||.|-= .-+..... .-+|+.+..+. ..|.|+.||. .+
T Consensus 31 DGkDRVi~LneKNfk~~lKky--d~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~-----~gigfg~VD~--~K 100 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKY--DVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLED-----KGIGFGMVDS--KK 100 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGG-----CTEEEEEEET--TT
T ss_pred CCccceEEcchhHHHHHHHhh--cEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccc-----cCcceEEecc--HH
Confidence 346789999999999999986 667788888763 22322222 33555555432 3499999996 57
Q ss_pred cHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
+..+++++|+...+++++|+.|.. ..|.|.++++.|+.||...+.-.+
T Consensus 101 d~klAKKLgv~E~~SiyVfkd~~~--------------IEydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 101 DAKLAKKLGVEEEGSIYVFKDGEV--------------IEYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp THHHHHHHT--STTEEEEEETTEE--------------EEE-S--SHHHHHHHHHHHHSSSE
T ss_pred HHHHHHhcCccccCcEEEEECCcE--------------EEecCccCHHHHHHHHHHhcccch
Confidence 899999999999999999988743 458899999999999998876444
No 136
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.89 E-value=4.3e-05 Score=68.92 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred CeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 66 TYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 66 k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
++++|.|| ++||+.|....|.++++++++.+. .+.++.|+.+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~------~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA------GAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC------CCEEEEecCC
Confidence 77888888 999999999999999999999642 3677777653
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.88 E-value=6.5e-05 Score=74.12 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=71.0
Q ss_pred HHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc---------ccHHHHHhCCCCcc
Q 010178 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHY 129 (516)
Q Consensus 59 ~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~~~I~~~ 129 (516)
.|....+++-||.||.+-|++|++++|.++.++++|. +.+..|+.+.. .+..++.++||..+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence 4443334678999999999999999999999999985 66777766432 23568899999999
Q ss_pred CeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
|++++..++.. .-...-.|..+.++|.+-|...+
T Consensus 215 Pal~Lv~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 215 PALYLVNPKSQ-----------KMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred ceEEEEECCCC-----------cEEEEeeccCCHHHHHHHHHHHH
Confidence 99999765311 11122358899999988776543
No 138
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.83 E-value=8.3e-05 Score=64.76 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=73.1
Q ss_pred cHHHHHh--cCCCCeEEEEEecC----CChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCc
Q 010178 55 NFDAVLR--DTPATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (516)
Q Consensus 55 ~f~~~l~--~~~~k~vlV~FyA~----WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~ 128 (516)
+|++.+. +...|+++|+||++ ||..|+..... +++.+.++ ..+.+.+.|++..+..+++..+++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln-------~~fv~w~~dv~~~eg~~la~~l~~~~ 76 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN-------TRMLFWACSVAKPEGYRVSQALRERT 76 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH-------cCEEEEEEecCChHHHHHHHHhCCCC
Confidence 4444442 23358999999999 99999765411 23334443 24788899998777889999999999
Q ss_pred cCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 129 ~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
||++.++.+.. + .-..+..+.|..++++|+..+...+
T Consensus 77 ~P~~~~l~~~~---~------~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 77 YPFLAMIMLKD---N------RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CCEEEEEEecC---C------ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999873210 0 1134567899999999999887654
No 139
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.78 E-value=4.8e-05 Score=68.27 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCeEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc-cHHHHHhCCCCccC
Q 010178 64 PATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYP 130 (516)
Q Consensus 64 ~~k~vlV~FyA~W-C~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~~~I~~~P 130 (516)
++++++|.||++| |++|+..+|.++++++++. .+.++.|+.+..+ ..+..+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 4688999999999 6999999999999999874 2678888764211 13344455554444
No 140
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.77 E-value=8.8e-05 Score=71.75 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=63.9
Q ss_pred CCCeE-EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------ccc
Q 010178 64 PATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (516)
Q Consensus 64 ~~k~v-lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~ 117 (516)
+++++ |+.|+++||+.|..+.+.+.+++.+|.+.+ +.++.|+++. |.+
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g------v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~ 100 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN------TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDL 100 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCC
Confidence 34664 679999999999999999999999997533 6677776643 123
Q ss_pred HHHHHhCCCC-------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 118 TNLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 118 ~~l~~~~~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
..+++.||+. ..|+++++. +|++... .+.....+++.++++..|+.
T Consensus 101 ~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~---------~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 101 GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI---------MYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE---------EEcCCCCCCCHHHHHHHHHH
Confidence 4567788873 578777774 4544321 11111234788999888864
No 141
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.77 E-value=4.8e-05 Score=60.33 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=37.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHh-----CCCCccCeEEEecCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-----FSVGHYPMLLWGSPS 138 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~-----~~I~~~PTl~~f~~g 138 (516)
++.||++||++|++..+.+.++. +.+-.+|.+ ++...... +++.++|+++ +.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-------------~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-------------AAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVK-FADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------------CceEEEeCc--CCHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence 67899999999999999886653 233456764 23333333 4899999984 5554
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.75 E-value=6.7e-05 Score=66.76 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc 112 (516)
++++++|.|| +.||+.|....|.+.++++++.. ..+.++.|..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~ 64 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV 64 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC
Confidence 4588999999 78999999999999999999853 2366776665
No 143
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.75 E-value=0.00014 Score=72.20 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--------------------------cc
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KI 116 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~ 116 (516)
+++++|+.|| ++||+.|..+.|.|.++++++.+.+ +.++.|.++. |.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g------v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~ 170 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG------VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDI 170 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcC
Confidence 3467888888 8999999999999999999997533 5555555432 12
Q ss_pred cHHHHHhCCCC-----ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 117 NTNLCDKFSVG-----HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 117 ~~~l~~~~~I~-----~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+..+++.||+. ..|+.+++. +|++.. ..+.....+++.++++..|..
T Consensus 171 ~~~iakayGv~~~~g~a~R~tFIID~dG~I~~---------~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 171 SREVSKSFGLLRDEGFSHRASVLVDKAGVVKH---------VAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred ChHHHHHcCCCCcCCceecEEEEECCCCEEEE---------EEEeCCCCCCCHHHHHHHHHH
Confidence 45688889985 478888775 554432 111222445788998887753
No 144
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.72 E-value=0.00014 Score=71.47 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=68.0
Q ss_pred HhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc---------ccHHHHHhCCCCccC
Q 010178 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHYP 130 (516)
Q Consensus 60 l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~~~I~~~P 130 (516)
|.+-.+.+-|+.||.+-|++|+.++|.++.+++.+. +.+..|+.+.. .+...+.++||..+|
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P 208 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP 208 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence 333334678999999999999999999999999985 55666665321 134467899999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
++++..++.. .....-.|..+.++|.+-|...
T Consensus 209 Al~Lv~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 209 ALMLVDPKSG-----------SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred eEEEEECCCC-----------cEEEEeeccCCHHHHHHHHHHH
Confidence 9999765311 1112235889999998877654
No 145
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.69 E-value=0.00018 Score=69.05 Aligned_cols=93 Identities=10% Similarity=0.106 Sum_probs=60.8
Q ss_pred Ce-EEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------cccHH
Q 010178 66 TY-AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINTN 119 (516)
Q Consensus 66 k~-vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~~ 119 (516)
++ +|+.|+++||+.|..+.+.+.++++++++. .+.++.|+++. |.+..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~------gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ 99 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKR------NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDRE 99 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHH
Confidence 44 456899999999999999999999999753 36677776542 12356
Q ss_pred HHHhCCCC----ccC----eEEEe-cCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 120 LCDKFSVG----HYP----MLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 120 l~~~~~I~----~~P----Tl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
+++.||+. +.| +.+++ ++|++... .+.....+++.+++++.|...
T Consensus 100 ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~---------~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 100 VAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI---------LYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HHHHcCCccccCCCCceeeEEEEECCCCeEEEE---------EecCCCCCCCHHHHHHHHHHH
Confidence 78888875 333 34554 45543311 011112357888898888653
No 146
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.68 E-value=0.00021 Score=57.26 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=51.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCc
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQ 149 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~ 149 (516)
|.+++++|+.|......+++++..+. +.+-.+|. .+.+++ .+|||.++|++++ +|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---------i~~ei~~~--~~~~~~-~~ygv~~vPalvI--ng~---------- 58 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---------IEVEIIDI--EDFEEI-EKYGVMSVPALVI--NGK---------- 58 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---------EEEEEEET--TTHHHH-HHTT-SSSSEEEE--TTE----------
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---------CeEEEEEc--cCHHHH-HHcCCCCCCEEEE--CCE----------
Confidence 44478889999999999999998873 55555564 234555 9999999999976 232
Q ss_pred cccchhhccc-cCCHHHHHHHHH
Q 010178 150 EKKEIRALED-WQTADGLLTWIN 171 (516)
Q Consensus 150 ~~~~v~~~~G-~~~~e~L~~~i~ 171 (516)
..+.| ..+.++|.++|+
T Consensus 59 -----~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 59 -----VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp -----EEEESS--HHHHHHHHHH
T ss_pred -----EEEEecCCCHHHHHHHhC
Confidence 23566 667788887763
No 147
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.67 E-value=0.00086 Score=57.98 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=77.5
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc---ccccHHHHHh
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---LKINTNLCDK 123 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~---~d~~~~l~~~ 123 (516)
..+.|+.-+|+.+|... +.+||.|=... |=-.-...|.++|++-.... +.+.++.|.+. ..+|.+++++
T Consensus 5 G~v~LD~~tFdKvi~kf--~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~----~dLLvAeVGikDYGek~N~~Laer 76 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKF--KYVLVKFDVAY--PYGEKHDAFKKLAKEASASS----DDLLVAEVGIKDYGEKENMELAER 76 (126)
T ss_dssp TSEEESTTHHHHHGGGS--SEEEEEEEESS----CHHHHHHHHHHHHHHCC-----SSEEEEEEECBSSSS-CCHHHHHH
T ss_pred ceeeccceehhheeccC--ceEEEEEeccC--CCcchHHHHHHHHHHHhcCC----CceEEEEeCcccccchhHHHHHHH
Confidence 46889999999999987 78999996543 22234568889994432221 45888888653 3478999999
Q ss_pred CCC--CccCeEEEecCCcccCCCCCCCccccchhhc--cccCCHHHHHHHHHHhcccCCC
Q 010178 124 FSV--GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL--EDWQTADGLLTWINKQTSRSYG 179 (516)
Q Consensus 124 ~~I--~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~--~G~~~~e~L~~~i~~~l~~~~~ 179 (516)
|+| ..||.+++|..+ . ++...| .|..+.++|..|+.++.+--++
T Consensus 77 y~i~ke~fPv~~LF~~~-~-----------~~pv~~p~~~~~t~~~l~~fvk~~t~~yig 124 (126)
T PF07912_consen 77 YKIDKEDFPVIYLFVGD-K-----------EEPVRYPFDGDVTADNLQRFVKSNTGLYIG 124 (126)
T ss_dssp TT-SCCC-SEEEEEESS-T-----------TSEEEE-TCS-S-HHHHHHHHHHTSS--TT
T ss_pred hCCCcccCCEEEEecCC-C-----------CCCccCCccCCccHHHHHHHHHhCCCeeec
Confidence 999 579999999843 1 233445 7889999999999998765444
No 148
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.62 E-value=0.00023 Score=68.90 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=62.2
Q ss_pred CCCeEEE-EEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------ccc
Q 010178 64 PATYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (516)
Q Consensus 64 ~~k~vlV-~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~ 117 (516)
++++++| .|+++||+.|..+.+.+.+++.++.+.+ +.++.|+++. |.+
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g------~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~ 105 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN------TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPM 105 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCc
Confidence 3466554 8889999999999999999999997533 6677776642 123
Q ss_pred HHHHHhCCCC-------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 118 TNLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 118 ~~l~~~~~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
..+++.||+. ..|+.+++. +|++.. ..+....-+++.++++..|+.
T Consensus 106 ~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~---------~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 106 GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRL---------ILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred hHHHHHcCCcccccCCceeEEEEEECCCCEEEE---------EEecCCCCCCCHHHHHHHHHH
Confidence 4667778863 357666664 444321 111112335799999988865
No 149
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.58 E-value=0.00013 Score=59.01 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc---cHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~---~~~l~~~~~I~~~PTl~~ 134 (516)
++.|+++|||+|+...+.++++. +. +.+.+..||-+.+. ...+.+.+|+.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-------~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-------PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-------CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999998876 22 23566666643111 123667789999999965
No 150
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.57 E-value=0.00032 Score=66.96 Aligned_cols=94 Identities=11% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCCeEEEEEec-CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--------------------------c
Q 010178 64 PATYAVVEFFA-NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------------I 116 (516)
Q Consensus 64 ~~k~vlV~FyA-~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--------------------------~ 116 (516)
.+++++|.||+ .||++|....+.+.++++++.+. .+.++.|+++.. .
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~------g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~ 108 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL------NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK 108 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence 46889999995 88999999999999999999753 367777776421 2
Q ss_pred cHHHHHhCCCC------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 117 ~~~l~~~~~I~------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
+.++++.||+. .+|+.+++. +|++... .+....-+++.+++++.|..
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~---------~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI---------TVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE---------EecCCCCCCCHHHHHHHHHh
Confidence 34677888875 367777664 4433210 01111234677788777754
No 151
>PRK13189 peroxiredoxin; Provisional
Probab=97.57 E-value=0.0003 Score=68.43 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCCeE-EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------------ccc
Q 010178 64 PATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (516)
Q Consensus 64 ~~k~v-lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~ 117 (516)
+++++ |+.|+++||+.|..+.+.+.++++++.+.+ +.++.|.++. |.+
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~------v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~ 107 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN------TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDR 107 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC------CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCc
Confidence 35654 457789999999999999999999997533 5666666542 123
Q ss_pred HHHHHhCCCC-------ccCeEEEec-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 118 TNLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 118 ~~l~~~~~I~-------~~PTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
..+++.||+. .+|+++++. +|++.. ..+.....+++.++++..|+..
T Consensus 108 ~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~---------~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 108 GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA---------ILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred cHHHHHhCCCccccCCCceeEEEEECCCCeEEE---------EEecCCCCCCCHHHHHHHHHHh
Confidence 4567777765 356666654 443321 1111223567888888888653
No 152
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.52 E-value=0.0005 Score=59.90 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=48.2
Q ss_pred ccHHHHHhc--CCCCeEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----cccHH
Q 010178 54 TNFDAVLRD--TPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (516)
Q Consensus 54 ~~f~~~l~~--~~~k~vlV~FyA-------~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (516)
++|.+.+.. .++++++|.|++ +|||.|++..|.+++.-.... ....++.+.+.. +.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~VG~r~~Wkdp~n~ 78 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEVGDRPEWKDPNNP 78 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE---HHHHC-TTSH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEcCCHHHhCCCCCC
Confidence 445566654 446789999997 599999999999998777643 235666665421 11222
Q ss_pred HHH--hCCCCccCeEEEecCC
Q 010178 120 LCD--KFSVGHYPMLLWGSPS 138 (516)
Q Consensus 120 l~~--~~~I~~~PTl~~f~~g 138 (516)
.-. +++|+++||++-+..+
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp HHH--CC---SSSEEEECTSS
T ss_pred ceEcceeeeeecceEEEECCC
Confidence 323 4999999999987543
No 153
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.50 E-value=0.00034 Score=62.11 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=44.0
Q ss_pred HHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC---CCCccCeEEEe
Q 010178 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF---SVGHYPMLLWG 135 (516)
Q Consensus 59 ~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~---~I~~~PTl~~f 135 (516)
.+.....+..++-|..+|||.|++..|.+.++++... .+.+-.+. .|++.++..+| |.+.+||++++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--------~i~~~~i~--rd~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--------NIEVRIIL--RDENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--------TEEEEEE---HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--------CCeEEEEE--ecCChhHHHHHHhCCCeecCEEEEE
Confidence 4444444667899999999999999999999999852 35554444 34677776655 68899999998
Q ss_pred cC
Q 010178 136 SP 137 (516)
Q Consensus 136 ~~ 137 (516)
..
T Consensus 105 d~ 106 (129)
T PF14595_consen 105 DK 106 (129)
T ss_dssp -T
T ss_pred cC
Confidence 54
No 154
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.48 E-value=0.0002 Score=63.99 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCeEEEEEecCCChh-hhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 64 PATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~-C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
++++++|.||++||++ |....|.++++++++.+.+. +++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~---~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGG---DDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhc---CceEEEEEEEC
Confidence 4588999999999998 99999999999999964210 14788888764
No 155
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.43 E-value=0.00066 Score=55.43 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=54.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCC--CCccCeEEEecCCcccCCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFS--VGHYPMLLWGSPSKFVAGS 144 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~--I~~~PTl~~f~~g~~~~~~ 144 (516)
++.|+.+||++|++....++++..++. .+.+..+|...+. ..++.+..+ +..+|++++ +|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~---- 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--------DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH---- 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--------CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE----
Confidence 788999999999999999999987653 2667777775321 234544444 588999875 3322
Q ss_pred CCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 145 WEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+ | ..++|.++++++++
T Consensus 69 ------------i-g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 69 ------------I-G--GCTDFEAYVKENLG 84 (85)
T ss_pred ------------E-c--CHHHHHHHHHHhcc
Confidence 1 1 35778888877664
No 156
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.41 E-value=0.0004 Score=69.18 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=73.8
Q ss_pred cceecC-cccHHHHHhcC-CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 47 HAVELN-ATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 47 ~v~~L~-~~~f~~~l~~~-~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
.|.+++ ++.|-+.+.+. ++.+|||.||-+-++.|..+...+..||..|. .++|++|... .- .+...|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--------~vKFvkI~a~--~~-~~~~~f 194 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--------EVKFVKIRAS--KC-PASENF 194 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--------TSEEEEEEEC--GC-CTTTTS
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--------ceEEEEEehh--cc-CcccCC
Confidence 466775 47788877553 34689999999999999999999999999995 4899999853 22 267899
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
.+...|||++|++|.....- . ..........+.++|..||.++
T Consensus 195 ~~~~LPtllvYk~G~l~~~~-V-----~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 195 PDKNLPTLLVYKNGDLIGNF-V-----GLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -TTC-SEEEEEETTEEEEEE-C-----TGGGCT-TT--HHHHHHHHHTT
T ss_pred cccCCCEEEEEECCEEEEeE-E-----ehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999998654320 0 0011122346778888888754
No 157
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.37 E-value=0.00097 Score=65.31 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEE---------------------------------
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV--------------------------------- 110 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~V--------------------------------- 110 (516)
.++.+++.|..+-||+|+++.++++++.+. + -.|.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~------v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G------ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C------eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 357789999999999999999998876431 0 00111111
Q ss_pred -----ecc--ccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 111 -----DCA--LKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 111 -----Dc~--~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
.|. .+++.++++++||+++||++ |.+|+ .+.|..+.+.|.++|++.
T Consensus 178 ~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----------------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 178 DVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGT----------------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCCcccccchHHHhHHHHHHcCCccccEEE-EcCCe----------------EeeCCCCHHHHHHHHHHc
Confidence 111 13567789999999999998 55553 346888999999998754
No 158
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.30 E-value=0.0011 Score=60.85 Aligned_cols=79 Identities=14% Similarity=0.341 Sum_probs=49.3
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhH-HH--HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC--
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKP-QY--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF-- 124 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P-~~--~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~-- 124 (516)
..+.+.|+..-.+ +|+++|.++.+||+.|+.|.- .| .++|+.++ ..+.-+.|| .++.+++-..|
T Consensus 24 ~w~~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-------~~FI~VkvD--ree~Pdid~~y~~ 92 (163)
T PF03190_consen 24 PWGEEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-------RNFIPVKVD--REERPDIDKIYMN 92 (163)
T ss_dssp -SSHHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-------HH-EEEEEE--TTT-HHHHHHHHH
T ss_pred cCCHHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-------CCEEEEEec--cccCccHHHHHHH
Confidence 3445667766555 489999999999999999885 44 45777775 246667777 46788888777
Q ss_pred ------CCCccCeEEEe-cCCc
Q 010178 125 ------SVGHYPMLLWG-SPSK 139 (516)
Q Consensus 125 ------~I~~~PTl~~f-~~g~ 139 (516)
|..|+|+.+|. +.|+
T Consensus 93 ~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp HHHHHHS---SSEEEEE-TTS-
T ss_pred HHHHhcCCCCCCceEEECCCCC
Confidence 88999988876 4443
No 159
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.29 E-value=0.0014 Score=58.93 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=26.7
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHh
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~ 94 (516)
.++++++|+.++||+|+.+.|.++++...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 467899999999999999999999987665
No 160
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00073 Score=57.91 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=54.4
Q ss_pred ccHHHHHhcC-CCCeEEEEEec--------CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-----cccHH
Q 010178 54 TNFDAVLRDT-PATYAVVEFFA--------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (516)
Q Consensus 54 ~~f~~~l~~~-~~k~vlV~FyA--------~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (516)
++|++++.+. +++-++|.|++ ||||.|.+..|.+.+.-+... ..+.|+.+++.. +-+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-------~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-------EDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-------CceEEEEEEecCCCcccCCCCc
Confidence 5566666543 34558999998 799999999999998877443 458888888642 12334
Q ss_pred HHHhCCC-CccCeEEEec
Q 010178 120 LCDKFSV-GHYPMLLWGS 136 (516)
Q Consensus 120 l~~~~~I-~~~PTl~~f~ 136 (516)
.-.+.++ .++||++=+.
T Consensus 86 FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cccCCCceeecceeeEEc
Confidence 4556676 8999998665
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.15 E-value=0.00072 Score=64.37 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHH
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~ 89 (516)
++..++.|+.+.||+|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4778999999999999999988875
No 162
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.05 E-value=0.0053 Score=57.02 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=81.4
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
-+.+..++.+++....... ..++++.|...-......+...++++|+.++ +.+.|+.+|+. ..+.++..+
T Consensus 76 ~P~v~~~t~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-------~~~~f~~~d~~--~~~~~~~~~ 145 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSP-KPPVLILFDNKDNESTEAFKKELQDIAKKFK-------GKINFVYVDAD--DFPRLLKYF 145 (184)
T ss_dssp STSCEEESTTHHHHHHSTS-SEEEEEEEETTTHHHHHHHHHHHHHHHHCTT-------TTSEEEEEETT--TTHHHHHHT
T ss_pred cccccccchhhHHHHhcCC-CceEEEEEEcCCchhHHHHHHHHHHHHHhcC-------CeEEEEEeehH--HhHHHHHHc
Confidence 4458889999998877663 1337788877778888889999999999886 46899999985 578899999
Q ss_pred CCC--ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 125 SVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 125 ~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
||. .+|+++++....- .......|..+.+.|.+|+++
T Consensus 146 ~i~~~~~P~~vi~~~~~~-----------~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 146 GIDEDDLPALVIFDSNKG-----------KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTSSSSEEEEEETTTS-----------EEEE--SSCGCHHHHHHHHHH
T ss_pred CCCCccCCEEEEEECCCC-----------cEEcCCCCCCCHHHHHHHhcC
Confidence 998 8999999763210 111123678999999999974
No 163
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.86 E-value=0.01 Score=49.28 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=64.3
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 55 ~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
.++..+.. +++++|-|+.++++ .....|.++|+.+.+ .+.|+.++ +.++..++++.. |++.+
T Consensus 9 ~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-------~~~F~~~~-----~~~~~~~~~~~~-~~i~l 70 (97)
T cd02981 9 ELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRD-------DYGFGHTS-----DKEVAKKLKVKP-GSVVL 70 (97)
T ss_pred HHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhccc-------CCeEEEEC-----hHHHHHHcCCCC-CceEE
Confidence 34444443 36789999999987 477889999998862 47787766 467888888764 89998
Q ss_pred ecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 135 GSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 135 f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
|++.. .....|.|..+.++|.+||..
T Consensus 71 ~~~~~------------~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFE------------EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcc------------cCCccCCCCCCHHHHHHHHHh
Confidence 86531 223458888889999999964
No 164
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.73 E-value=0.0054 Score=50.27 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCC--CCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFS--VGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~--I~~~PTl~~ 134 (516)
++.|..+|||+|++....++++..+.. .+.+..+|...+. ..++.+..| +..+|++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--------~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi 63 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--------DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV 63 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE
Confidence 678999999999999988887764432 2556667764221 234556666 478999965
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.72 E-value=0.0055 Score=67.77 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=60.9
Q ss_pred CeEEE-EEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCC
Q 010178 66 TYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (516)
Q Consensus 66 k~vlV-~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~ 144 (516)
+++-| .|.+++|++|....-.+++++... +.|..-.+|. .+.++++.+|+|.++|++++ +|
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~--------~~i~~~~i~~--~~~~~~~~~~~v~~vP~~~i--~~------ 537 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLN--------PNVEAEMIDV--SHFPDLKDEYGIMSVPAIVV--DD------ 537 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhC--------CCceEEEEEC--cccHHHHHhCCceecCEEEE--CC------
Confidence 45544 557999999999998999888875 2477788886 46899999999999999987 11
Q ss_pred CCCCccccchhhccccCCHHHHHHHH
Q 010178 145 WEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
+ ..+.|..+.++|+++|
T Consensus 538 -------~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 538 -------Q--QVYFGKKTIEEMLELI 554 (555)
T ss_pred -------E--EEEeeCCCHHHHHHhh
Confidence 1 2356778888888876
No 166
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.69 E-value=0.011 Score=53.70 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=33.5
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc 112 (516)
.+++|++|+..-||+|+.+.+.+.++.+.+-+. +.|.+...+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-----~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-----GKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-----TTEEEEEEES
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-----CceEEEEEEc
Confidence 477899999999999999999999988887322 4577776654
No 167
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.56 E-value=0.013 Score=58.11 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEe----------------cc---------------
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD----------------CA--------------- 113 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VD----------------c~--------------- 113 (516)
.+.+++.|.-+-||+|+++.+++.++.+. +.|.+..+. |+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~ 187 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGG 187 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhh
Confidence 46689999999999999999887765432 112222111 00
Q ss_pred -----------------ccccHHHHHhCCCCccCeEEEecC-CcccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 114 -----------------LKINTNLCDKFSVGHYPMLLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 114 -----------------~d~~~~l~~~~~I~~~PTl~~f~~-g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
.++|..+.+++||+|+||+++-.. | .+..+.|..++++|.+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G--------------~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 188 KLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG--------------TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--------------CEEEecCCCCHHHHHHHhC
Confidence 022445778899999999998542 2 1234678888888887764
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.42 E-value=0.013 Score=64.35 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=66.0
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCC
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~ 145 (516)
..-+-.|+++.||+|......+++++... +.|..-.||. .+++++..+|+|.++|++++ +++
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--------~~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~------ 178 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLN--------PNITHTMIDG--ALFQDEVEARNIMAVPTVFL--NGE------ 178 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhC--------CCceEEEEEc--hhCHhHHHhcCCcccCEEEE--CCc------
Confidence 44588999999999999999999998863 3588888886 47899999999999999976 221
Q ss_pred CCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 146 EPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 146 ~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
..+.|..+.+++++.+.+..+
T Consensus 179 ---------~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 179 ---------EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred ---------EEEecCCCHHHHHHHHhcccc
Confidence 235677888888888876543
No 169
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.41 E-value=0.0085 Score=46.32 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHH----HHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTN----LCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~----l~~~~~I~~~PTl~~ 134 (516)
++.|+++||++|++..+.+.+. .+.+..+|.+. +.. +.+..++.++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------------~i~~~~~~i~~--~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------------GIPFEEVDVDE--DPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------------CCCeEEEeCCC--CHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988777652 14455566532 333 333347899999976
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.40 E-value=0.011 Score=44.64 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=38.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+||++|++....+++ . .+.+-.+|.+.+ .-.++.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999877743 2 266777777543 1233444459999999987
No 171
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.019 Score=49.70 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=65.1
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+....++.+.....+.++|-|.-.|=|.|..+-..+.+.++.+.+ -..++-+|. ++-+++-+-|++...||
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-------fa~Iylvdi--deV~~~~~~~~l~~p~t 80 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-------FAVIYLVDI--DEVPDFVKMYELYDPPT 80 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-------ceEEEEEec--chhhhhhhhhcccCCce
Confidence 346677788777778999999999999999999999999999863 356667776 46788899999999999
Q ss_pred EEEecCCc
Q 010178 132 LLWGSPSK 139 (516)
Q Consensus 132 l~~f~~g~ 139 (516)
+++|-+++
T Consensus 81 vmfFfn~k 88 (142)
T KOG3414|consen 81 VMFFFNNK 88 (142)
T ss_pred EEEEEcCc
Confidence 98876543
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.29 E-value=0.004 Score=49.96 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc---cHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~---~~~l~~~~~I~~~PTl~~ 134 (516)
++.|+++|||+|+...+.++++... +.+..++...+. ...+.+..|+.++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 5889999999999999999886543 345555543211 123556678999999854
No 173
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.23 E-value=0.017 Score=46.93 Aligned_cols=60 Identities=27% Similarity=0.459 Sum_probs=42.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc------------------------------ccH
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK------------------------------INT 118 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d------------------------------~~~ 118 (516)
++.|+.+.||+|..+.+.++++..... +.+.+....+... ++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADT 73 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 468999999999999999999874433 3354444432111 123
Q ss_pred HHHHhCCCCccCeEEEe
Q 010178 119 NLCDKFSVGHYPMLLWG 135 (516)
Q Consensus 119 ~l~~~~~I~~~PTl~~f 135 (516)
...+++||.++||+++.
T Consensus 74 ~~~~~~g~~g~Pt~v~~ 90 (98)
T cd02972 74 ALARALGVTGTPTFVVN 90 (98)
T ss_pred HHHHHcCCCCCCEEEEC
Confidence 46778999999999984
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0047 Score=58.88 Aligned_cols=65 Identities=12% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCC
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g 138 (516)
+++..++.|||+||.+|.++...+..+++... .+.+++++. ++..+++..+.|...|++.++..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--------~~~~~k~~a--~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--------NAQFLKLEA--EEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--------hheeeeehh--hhhhHHHHHHHHhcCceeeeeecc
Confidence 45788999999999999999999999999883 378888885 678999999999999999998655
No 175
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.08 E-value=0.038 Score=46.16 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=70.8
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC----c
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----H 128 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~----~ 128 (516)
-.+|+..+... .-|||.|..+-= .-......+.++|+..++ .=.++-|||.+.+...+|.++.|. -
T Consensus 9 ~KdfKKLLRTr--~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG-------~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 9 HKDFKKLLRTR--NNVLVLYSKSAK-SAEALLKLLSDVAQAVKG-------QGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred hHHHHHHHhhc--CcEEEEEecchh-hHHHHHHHHHHHHHHhcC-------ceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 46788887765 337787776643 333344578889999874 457889999877789999999998 5
Q ss_pred cC-eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 129 YP-MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 129 ~P-Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
-| +++.|++|.+. ..|+-..+...+++|+..
T Consensus 79 ~~~~LkHYKdG~fH-------------kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 79 KPVELKHYKDGDFH-------------TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CcchhhcccCCCcc-------------ccccchhhHHHHHHHhhC
Confidence 55 56668888664 346777888999998863
No 176
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.05 E-value=0.043 Score=48.22 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=61.2
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC-
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP- 130 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P- 130 (516)
++-..++++.+..++.++|-|.-+|=+.|.++-..+.+.++.++ +-..++.+|. ++-++..+-|++. -|
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~-------~~a~IY~vDi--~~Vpdfn~~yel~-dP~ 76 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK-------NFAVIYLVDI--DEVPDFNQMYELY-DPC 76 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--TTTHCCHHHTTS--SSE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh-------cceEEEEEEc--ccchhhhcccccC-CCe
Confidence 35667888877778999999999999999999999999999987 3478888897 4678888999999 77
Q ss_pred eEEEecCC
Q 010178 131 MLLWGSPS 138 (516)
Q Consensus 131 Tl~~f~~g 138 (516)
|++||-++
T Consensus 77 tvmFF~rn 84 (133)
T PF02966_consen 77 TVMFFFRN 84 (133)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 67776443
No 177
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.80 E-value=0.014 Score=54.34 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=65.8
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+..+|-+.+..+ .-|++.||-+--..|+-+-..++.||+.+- ...|+.||. +..+-++.+++|.-.||
T Consensus 73 ~Ekdf~~~~~kS--~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--------eTrFikvna--e~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 73 SEKDFFEEVKKS--EKVVCHFYRPEFFRCKIMDKHLEILAKRHV--------ETRFIKVNA--EKAPFLVTKLNIKVLPT 140 (211)
T ss_pred cHHHHHHHhhcC--ceEEEEEEcCCCcceehHHHHHHHHHHhcc--------cceEEEEec--ccCceeeeeeeeeEeee
Confidence 356666666555 448999999999999999999999999874 378999996 56788999999999999
Q ss_pred EEEecCCccc
Q 010178 132 LLWGSPSKFV 141 (516)
Q Consensus 132 l~~f~~g~~~ 141 (516)
+.+|.+|+..
T Consensus 141 v~l~k~g~~~ 150 (211)
T KOG1672|consen 141 VALFKNGKTV 150 (211)
T ss_pred EEEEEcCEEE
Confidence 9999998643
No 178
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.72 E-value=0.15 Score=43.86 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=70.4
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHH---hCCCCCCCCCeEEEEEEeccccccHHHHHhCC
Q 010178 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARL---FNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (516)
Q Consensus 49 ~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~---~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~ 125 (516)
.+++.+++....... .+..+.|+.+ ..=....+.+.++|++ ++ +++.|+.+|.+ ......+.||
T Consensus 2 ~e~t~e~~~~~~~~~--~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k-------gki~Fv~~d~~--~~~~~~~~fg 68 (111)
T cd03072 2 REITFENAEELTEEG--LPFLILFHDK--DDLESLKEFKQAVARQLISEK-------GAINFLTADGD--KFRHPLLHLG 68 (111)
T ss_pred cccccccHHHHhcCC--CCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC-------ceEEEEEEech--HhhhHHHHcC
Confidence 457778887555443 4445566622 2235678889999999 76 57999999974 3444889999
Q ss_pred CCc--cCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 126 VGH--YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 126 I~~--~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
+.. .|.+.+...... .....+.+..+.++|.+|+++.+.
T Consensus 69 l~~~~~P~i~i~~~~~~-----------~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 69 KTPADLPVIAIDSFRHM-----------YLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCHhHCCEEEEEcchhc-----------CcCCCCccccCHHHHHHHHHHHhc
Confidence 997 899998653210 111114567889999999988764
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.45 E-value=0.066 Score=58.70 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=64.0
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCC
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSW 145 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~ 145 (516)
+.-+-.|.++.||+|....-.+++++... +.|..-.+|. .+++++..+|+|.++|++++ +++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~--------p~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~------ 179 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLN--------PNISHTMIDG--ALFQDEVEALGIQGVPAVFL--NGE------ 179 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhC--------CCceEEEEEc--hhCHHHHHhcCCcccCEEEE--CCc------
Confidence 44588899999999998888888888774 3477777886 46899999999999999987 221
Q ss_pred CCCccccchhhccccCCHHHHHHHHHHhcc
Q 010178 146 EPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 146 ~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
..+.|..+.+++++.+.+..+
T Consensus 180 ---------~~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 180 ---------EFHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred ---------EEEecCCCHHHHHHHHhhccC
Confidence 235677888888777765544
No 180
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.40 E-value=0.031 Score=42.80 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=36.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
++.|.++||++|+...+.+++.. +.+..+|...+. ...+.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999998887653 345566664322 233445567788998854
No 181
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.25 E-value=0.12 Score=45.88 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=73.8
Q ss_pred cceecCcccH-HHHHhcCCCCeEEEEEecC--CChh-h-hhhhHHHHHHHHHhCCCCCCCCCe-EEEEEEeccccccHHH
Q 010178 47 HAVELNATNF-DAVLRDTPATYAVVEFFAN--WCPA-C-RNYKPQYEKVARLFNGPNAAHPGI-ILMTRVDCALKINTNL 120 (516)
Q Consensus 47 ~v~~L~~~~f-~~~l~~~~~k~vlV~FyA~--WC~~-C-~~~~P~~~~la~~~~~~~~~~~~~-v~~~~VDc~~d~~~~l 120 (516)
.+++|+.+++ +..-.. +..-+|-|.-. -|.. + ......+.++|+.+++ + +.|+.+|.+ +...+
T Consensus 3 ~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg-------k~i~Fv~vd~~--~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK-------KPWGWLWTEAG--AQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC-------CcEEEEEEeCc--ccHHH
Confidence 4677776665 333333 24555656432 1322 3 3457789999999984 4 899999974 45669
Q ss_pred HHhCCCC--ccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCC
Q 010178 121 CDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (516)
Q Consensus 121 ~~~~~I~--~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~ 178 (516)
.+.|||. ++|+++++...+ .....+.|..+.++|.+|+++.+....
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~------------~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRK------------MKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHcCCCccCCCEEEEEeccc------------CccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999995 499999876431 112226688999999999999886544
No 182
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.25 E-value=0.053 Score=51.29 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=82.0
Q ss_pred cceec-CcccHHHHHhcC-CCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 47 HAVEL-NATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 47 ~v~~L-~~~~f~~~l~~~-~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
.|.++ +++.|-++|... +...++|..|-+--+-|-.+...+.=||.+| +.++|.++-. .+....++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey--------P~vKFckiks---s~~gas~~F 207 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY--------PIVKFCKIKS---SNTGASDRF 207 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC--------CceeEEEeee---ccccchhhh
Confidence 45555 468888888765 3456789999999999999999999999998 4689999884 467788999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
...+.||+++|++|.+... . -+....+.....+.++.+|++++
T Consensus 208 ~~n~lP~LliYkgGeLIgN-F-----v~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGGELIGN-F-----VSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCCchhHH-H-----HHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999999865431 0 01111222345667788888764
No 183
>PHA03005 sulfhydryl oxidase; Provisional
Probab=95.01 E-value=0.098 Score=42.72 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=42.8
Q ss_pred cHHHHHHHHhccCCCCCCHHHHHHHHHHhHhccCChHHHHHHHHHHhcCCCCCCChhHHHHHHH-Hhhhh
Q 010178 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLW-STHNQ 383 (516)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~~ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw-~~HN~ 383 (516)
|+|+..|.+..++.+.+..+.....---|-.-.||.+||.|=.+.+.++...-++.-.-+.... +.||.
T Consensus 9 a~W~vIFivi~k~~~~~~iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn 78 (96)
T PHA03005 9 AIWTVIFIVISKAKLDGNIEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN 78 (96)
T ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence 6899999888888877754333322233334689999999998888765322222222333333 55654
No 184
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.96 E-value=0.094 Score=44.59 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--cccHHHHHhCCCC-c
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVG-H 128 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--d~~~~l~~~~~I~-~ 128 (516)
+.+++++++..+..++++|.=.++.||-.......|++...... +.+.++.+|.-. +-...++.+|||+ .
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~-------~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP-------DEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----------EEEEEGGGGHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC-------ccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 45788999988777887777789999999999999999988875 237888888732 2235678999998 5
Q ss_pred cCeEEEecCCccc
Q 010178 129 YPMLLWGSPSKFV 141 (516)
Q Consensus 129 ~PTl~~f~~g~~~ 141 (516)
-|.++++++|+..
T Consensus 79 SPQ~ili~~g~~v 91 (105)
T PF11009_consen 79 SPQVILIKNGKVV 91 (105)
T ss_dssp SSEEEEEETTEEE
T ss_pred CCcEEEEECCEEE
Confidence 7999999998643
No 185
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.77 E-value=0.08 Score=42.44 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=38.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc-HHHHHhCCCCccCeEEE
Q 010178 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-TNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 68 vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~-~~l~~~~~I~~~PTl~~ 134 (516)
-++.|..+||++|++..-.+++. .+.+-.+|++.+.. ..+....|...+|++++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 37889999999999998777632 14455567643322 34555678999999965
No 186
>PHA03050 glutaredoxin; Provisional
Probab=94.70 E-value=0.063 Score=46.06 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=36.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc-cc----HHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-IN----TNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d-~~----~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+|||+|++....+++..-.. . .+-.+|.+.. .. ..+-+.-|.+.+|++++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~--------~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR--------G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc--------C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 78899999999999987776653211 1 2333444321 12 33555568889999966
No 187
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.46 E-value=0.23 Score=40.19 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=48.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc-cHHHHHhCCCCccCeEEEecCCcccCCCCCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~ 147 (516)
++.|..+||++|++..-.+++. .|.+-.+|++.+. ..+..+..|...+|++++- +
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-------------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~--~--------- 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-------------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIAG--D--------- 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEEC--C---------
Confidence 5778899999999988777431 2667777875322 1222345688899999761 1
Q ss_pred CccccchhhccccCCHHHHHHHHHHhc
Q 010178 148 NQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 148 ~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
. ..++.+.+.|.+++..+.
T Consensus 59 -------~-~~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 59 -------L-SWSGFRPDMINRLHPAPH 77 (81)
T ss_pred -------E-EEecCCHHHHHHHHHhhh
Confidence 1 123567788888776554
No 188
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.28 Score=44.90 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=47.6
Q ss_pred HhcCCCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc-------------------cccHH
Q 010178 60 LRDTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTN 119 (516)
Q Consensus 60 l~~~~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~ 119 (516)
+.+.++++||++|| ..++|-|-.++-.|.....++...+ ..++.|..+. |.+..
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~------a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~ 98 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG------AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE 98 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC------CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH
Confidence 44555788999999 7899999999999999999987533 5666676542 45667
Q ss_pred HHHhCCCCc
Q 010178 120 LCDKFSVGH 128 (516)
Q Consensus 120 l~~~~~I~~ 128 (516)
+++.|||-.
T Consensus 99 v~~~ygv~~ 107 (157)
T COG1225 99 VAEAYGVWG 107 (157)
T ss_pred HHHHhCccc
Confidence 788887743
No 189
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.32 E-value=0.14 Score=43.81 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=56.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhH---HHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHh
Q 010178 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKP---QYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (516)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P---~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (516)
....++.+++++.+... . ..|.|++.-|.-+.+..- .+-+|.+.+. +.+..+.++ .+....+..+
T Consensus 10 g~~~vd~~~ld~~l~~~--~-~~vlf~~gDp~r~~E~~DvaVILPEL~~af~-------~~~~~avv~--~~~e~~L~~r 77 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAP--G-DAVLFFAGDPARFPETADVAVILPELVKAFP-------GRFRGAVVA--RAAERALAAR 77 (107)
T ss_dssp TEEEE-CCCHHHHHHCC--S-CEEEEESS-TTTSTTCCHHHHHHHHHHCTST-------TSEEEEEEE--HHHHHHHHHH
T ss_pred CCeeechhhHHHHHhCC--C-cEEEEECCCCCcCcccccceeEcHHHHHhhh-------CccceEEEC--chhHHHHHHH
Confidence 45678899999999874 3 356777776555444333 4555555554 456777777 3567899999
Q ss_pred CCCCccCeEEEecCCccc
Q 010178 124 FSVGHYPMLLWGSPSKFV 141 (516)
Q Consensus 124 ~~I~~~PTl~~f~~g~~~ 141 (516)
||+..+|+++||+.|+..
T Consensus 78 ~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 78 FGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp HT-TSSSEEEEEETTEEE
T ss_pred hCCccCCeEEEEECCEEE
Confidence 999999999999988654
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.27 E-value=0.13 Score=43.34 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=34.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc-H----HHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-T----NLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~-~----~l~~~~~I~~~PTl~~ 134 (516)
++.|..+|||+|++..-.+++.. +.+..+|++.+.+ . .+.+..|...+|++++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-------------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-------------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 78899999999999887665432 2333455433222 2 2334457889999854
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.11 E-value=0.61 Score=40.14 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=64.1
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEe----cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCC
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFF----ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~Fy----A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~ 125 (516)
+++.++...... .+.++-|| +.-=..=......+.++|+.+++ +++.|+.+|.+ +.....+.||
T Consensus 3 ~~~~en~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~------gki~Fv~~D~~--~~~~~l~~fg 70 (111)
T cd03073 3 HRTKDNRAQFTK----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD------RKLNFAVADKE--DFSHELEEFG 70 (111)
T ss_pred eeccchHHHhcc----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC------CeEEEEEEcHH--HHHHHHHHcC
Confidence 456666665532 22344433 22223345678899999999972 26999999964 4555889999
Q ss_pred CCc----cCeEEEecCCcccCCCCCCCccccchhhccccC-CHHHHHHHHHHh
Q 010178 126 VGH----YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ-TADGLLTWINKQ 173 (516)
Q Consensus 126 I~~----~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~-~~e~L~~~i~~~ 173 (516)
+.. .|++.++.... .. ....+.. +.++|.+|+.+.
T Consensus 71 l~~~~~~~P~~~i~~~~~------------~K-Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 71 LDFSGGEKPVVAIRTAKG------------KK-YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCcccCCCCEEEEEeCCC------------Cc-cCCCcccCCHHHHHHHHHHh
Confidence 985 99999865310 00 1134556 899999999764
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.10 E-value=0.051 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+|||+|......+++.. +.+-.+|++.+ .-.++.+..|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-------------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-------------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-------------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 35688999999999998887532 33444554322 1233444568889999865
No 193
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.07 E-value=0.18 Score=40.66 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=56.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~ 148 (516)
|+.|..+.|+-|......+.++.... .+.+-.||.+ +++++..+|+. .+|.+.+-..+...
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---------~~~l~~vDI~--~d~~l~~~Y~~-~IPVl~~~~~~~~~------- 62 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---------PFELEEVDID--EDPELFEKYGY-RIPVLHIDGIRQFK------- 62 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---------TCEEEEEETT--TTHHHHHHSCT-STSEEEETT-GGGC-------
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---------CceEEEEECC--CCHHHHHHhcC-CCCEEEEcCccccc-------
Confidence 67889999999999998888765443 3788899985 67889999996 69998873321111
Q ss_pred ccccchhhccccCCHHHHHHHHH
Q 010178 149 QEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 149 ~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
......+..+.+.|.+||+
T Consensus 63 ----~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 63 ----EQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ----TSEEEESSB-HHHHHHHHH
T ss_pred ----ccceeCCCCCHHHHHHHhC
Confidence 0133456788899988874
No 194
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.70 E-value=0.32 Score=44.88 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhcccc-C
Q 010178 83 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-Q 161 (516)
Q Consensus 83 ~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~ 161 (516)
....|.++|+.+. +.+.|+.++ +.+++.+++|.. |++++|+++. +....|.|. .
T Consensus 8 ~~~~f~~~A~~~~-------~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~------------~~~~~y~~~~~ 62 (184)
T PF13848_consen 8 LFEIFEEAAEKLK-------GDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFD------------EKPVVYDGDKF 62 (184)
T ss_dssp HHHHHHHHHHHHT-------TTSEEEEEE------HHHHHHCTCSS-SEEEEEECTT------------TSEEEESSSTT
T ss_pred HHHHHHHHHHhCc-------CCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCC------------CCceecccccC
Confidence 4567889999997 348888887 567999999999 9999997631 223567787 8
Q ss_pred CHHHHHHHHHHhcccCC
Q 010178 162 TADGLLTWINKQTSRSY 178 (516)
Q Consensus 162 ~~e~L~~~i~~~l~~~~ 178 (516)
+.++|.+||..+.-+.+
T Consensus 63 ~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLV 79 (184)
T ss_dssp SHHHHHHHHHHHSSTSC
T ss_pred CHHHHHHHHHHhccccc
Confidence 99999999998865443
No 195
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.43 E-value=0.082 Score=41.47 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhCCCC-ccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVG-HYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~~I~-~~PTl~~ 134 (516)
++.|..+||++|......+++. .+.+..+|++.+ .-.++-+..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678899999999988777652 145556666432 112334456776 8998865
No 196
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.38 E-value=0.051 Score=54.39 Aligned_cols=99 Identities=17% Similarity=0.328 Sum_probs=72.6
Q ss_pred HHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCC
Q 010178 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (516)
Q Consensus 59 ~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g 138 (516)
.+-.++..++=+.||++|||.-+...|++.-....+. .+....++=. ..-..+..+|++.+.|++.+...
T Consensus 70 ~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--------~i~h~~vee~-~~lpsv~s~~~~~~~ps~~~~n~- 139 (319)
T KOG2640|consen 70 AIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--------SIQHFAVEES-QALPSVFSSYGIHSEPSNLMLNQ- 139 (319)
T ss_pred hhccccCCcccccchhcccCcccccCcccchhhhhcc--------ccccccHHHH-hhcccchhccccccCCcceeecc-
Confidence 3333334578899999999999999999988877774 2444445421 12356788999999999988543
Q ss_pred cccCCCCCCCccccchhhccccCCHHHHHHHHHHhcccCCCC
Q 010178 139 KFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSYGL 180 (516)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~~~~l 180 (516)
.-...|.|.++...|++|..+.++-.+.+
T Consensus 140 -------------t~~~~~~~~r~l~sLv~fy~~i~~~~v~i 168 (319)
T KOG2640|consen 140 -------------TCPASYRGERDLASLVNFYTEITPMSVLI 168 (319)
T ss_pred -------------ccchhhcccccHHHHHHHHHhhccchhcc
Confidence 22356889999999999999988755443
No 197
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.36 E-value=0.25 Score=38.61 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc-HHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-TNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~-~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+|||.|.+..-.+++. . +.+..+|++.+.. ..+....|...+|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~----~---------i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN----G---------ISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C---------CCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 6789999999999997666632 1 4455666643332 23444568899999865
No 198
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.22 E-value=0.16 Score=46.36 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=41.8
Q ss_pred CCeEEEEEe-cCCChhhhhh-hHHHHHHHHHhCCCCCCCCCeE-EEEEEecccc-ccHHHHHhCCCC-ccC
Q 010178 65 ATYAVVEFF-ANWCPACRNY-KPQYEKVARLFNGPNAAHPGII-LMTRVDCALK-INTNLCDKFSVG-HYP 130 (516)
Q Consensus 65 ~k~vlV~Fy-A~WC~~C~~~-~P~~~~la~~~~~~~~~~~~~v-~~~~VDc~~d-~~~~l~~~~~I~-~~P 130 (516)
+++++|.|| +.||+.|... .+.|.+.+.++.+.+ + .++.|.++.. .....++++++. .+|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g------~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG------VDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC------CCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 355666665 8999999999 999999999987533 4 4666766432 234467787772 444
No 199
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.19 E-value=0.22 Score=39.04 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=34.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHH---HhCCCCccCeEEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC---DKFSVGHYPMLLW 134 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~---~~~~I~~~PTl~~ 134 (516)
+.|..++|++|+.....+++. .+.+-.+|.+. ++... .+.|...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~~di~~--~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-------------GIAFEEINIDE--QPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------------CCceEEEECCC--CHHHHHHHHHcCCcccCEEEE
Confidence 567889999999998777642 25566677643 33333 3458889999876
No 200
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=92.96 E-value=1.1 Score=37.87 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=62.2
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeE
Q 010178 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (516)
Q Consensus 53 ~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl 132 (516)
.++++..+... +.++|=|+..-=+ .....|.++|..+.+ ...|+... +..+..++++ .|++
T Consensus 8 ~~~l~~f~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~--~~~i 68 (104)
T cd03069 8 EAEFEKFLSDD--DASVVGFFEDEDS---KLLSEFLKAADTLRE-------SFRFAHTS-----DKQLLEKYGY--GEGV 68 (104)
T ss_pred HHHHHHHhccC--CcEEEEEEcCCCc---hHHHHHHHHHHhhhh-------cCEEEEEC-----hHHHHHhcCC--CCce
Confidence 45566666543 5567777766333 466788899998852 36676544 3567889998 7888
Q ss_pred EEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 133 LWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 133 ~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
++|++..+... .. +....|.|..+.+.|.+||..+
T Consensus 69 vl~~p~~~~~k-~d-----e~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 69 VLFRPPRLSNK-FE-----DSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEEechhhhcc-cC-----cccccccCcCCHHHHHHHHHhh
Confidence 88865321110 00 1224588888899999999764
No 201
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.31 E-value=0.16 Score=39.92 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=36.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+||++|++..-.+++. .+.+..+|+..+. ..++.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999998777642 1455666764321 234555667788999966
No 202
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.34 E-value=0.3 Score=46.80 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=25.4
Q ss_pred CeEEEEEecCCChhhhhhhHHH---HHHHHHhC
Q 010178 66 TYAVVEFFANWCPACRNYKPQY---EKVARLFN 95 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~ 95 (516)
++.+|+|+.--||||.++.|.+ +.+.+.+.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 4569999999999999999976 67777764
No 203
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=90.98 E-value=0.95 Score=44.08 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=43.1
Q ss_pred ccccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCC
Q 010178 42 KVEVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96 (516)
Q Consensus 42 ~~~~~~v~~L~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~ 96 (516)
+.++.+|+.+++++...++. ...+.|.+|+|.+--||+=+.-.+.|++++++|.+
T Consensus 78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 35667899999888433332 12358899999999999999999999999999974
No 204
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=90.56 E-value=4 Score=34.18 Aligned_cols=92 Identities=11% Similarity=0.210 Sum_probs=60.7
Q ss_pred CcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 52 NATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 52 ~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
+.++++..+. .. ..++|=|+..-=+ .....|.++|..+.+ ...|+... +.++...+++. .|
T Consensus 7 ~~~~~e~~~~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~~-~~ 68 (102)
T cd03066 7 SERELQAFENIED--DIKLIGYFKSEDS---EHYKAFEEAAEEFHP-------YIKFFATF-----DSKVAKKLGLK-MN 68 (102)
T ss_pred CHHHHHHHhcccC--CeEEEEEECCCCC---HHHHHHHHHHHhhhc-------CCEEEEEC-----cHHHHHHcCCC-CC
Confidence 4455777776 43 4566767765333 356688899998852 35665544 45677888775 79
Q ss_pred eEEEecCCcccCCCCCCCccccchhhc-cccCCHHHHHHHHHHh
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRAL-EDWQTADGLLTWINKQ 173 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~-~G~~~~e~L~~~i~~~ 173 (516)
++.++++. . +....| .|..+.+.|.+||..+
T Consensus 69 ~i~l~~~~--~----------e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 69 EVDFYEPF--M----------EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cEEEeCCC--C----------CCCcccCCCCCCHHHHHHHHHHh
Confidence 99988652 1 112346 7788999999999754
No 205
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.48 E-value=1.6 Score=41.16 Aligned_cols=107 Identities=11% Similarity=0.214 Sum_probs=73.7
Q ss_pred CcceecCcccHHHHHh-cCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 46 DHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 46 ~~v~~L~~~~f~~~l~-~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
..|..+++..|...+. .+.+-||+|..|...=+.|.-+...++.+|..|. .++|+++-.++ -.-.|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--------~iKFVki~at~-----cIpNY 157 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--------QIKFVKIPATT-----CIPNY 157 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--------cceEEeccccc-----ccCCC
Confidence 3577888888877554 4456799999999999999999999999999995 47777765321 11234
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhcccc-CCHHHHHHHHHH
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINK 172 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~e~L~~~i~~ 172 (516)
-=...||+++|..|.+.... -.+..+.|. .+.+++..++-+
T Consensus 158 Pe~nlPTl~VY~~G~lk~q~-------igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 158 PESNLPTLLVYHHGALKKQM-------IGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cccCCCeEEEeecchHHhhe-------ehhhhhcCCcCCHHHHHHHHHh
Confidence 44568999999988654321 111223333 466777666644
No 206
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.95 E-value=0.4 Score=39.46 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=30.4
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 75 ~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
+||++|++..-.+++.. +.+..+|...+. ...+.+..|-..+|++++
T Consensus 21 ~~Cp~C~~ak~~L~~~~-------------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQLG-------------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHcC-------------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 79999999887776542 345555653221 233455568889999855
No 207
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.80 E-value=0.48 Score=43.59 Aligned_cols=31 Identities=32% Similarity=0.683 Sum_probs=27.8
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFN 95 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~ 95 (516)
+++.|++|+...||+|+.+.+.+.++.+++.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 3678999999999999999999999888873
No 208
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.95 Score=36.47 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--c-HHHHHhC-CCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--N-TNLCDKF-SVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~-~~l~~~~-~I~~~PTl~~ 134 (516)
++.|.-++||+|++..-.+.+. .+.+..+|.+.+. . .+..++- |.+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5778899999999988666622 2455555554333 1 2334444 8899999987
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=89.52 E-value=1.1 Score=41.92 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCC
Q 010178 71 EFFANWCPACRNYKPQYEKVARLFNG 96 (516)
Q Consensus 71 ~FyA~WC~~C~~~~P~~~~la~~~~~ 96 (516)
.|..|.|+.|-.+.|.+.++..++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999863
No 210
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.47 E-value=0.53 Score=39.45 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=30.7
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 75 ~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
+|||+|++....+.+.. +.+..+|...+. -..+.+..|-..+|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~~-------------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG-------------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC-------------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 89999999887776531 345566763221 123445567788999976
No 211
>PRK10638 glutaredoxin 3; Provisional
Probab=89.37 E-value=0.44 Score=38.43 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
++.|..+||++|++..-.+++.. +.+..+|++.+. ..++.+..|...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-------------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-------------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56777899999999987776431 344556664321 234455668888998865
No 212
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.30 E-value=2.1 Score=47.43 Aligned_cols=97 Identities=7% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEe
Q 010178 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (516)
Q Consensus 56 f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f 135 (516)
++..+.+-.+...|+.|+.+-|..|......+++++.. . ++|.+...|. .++.+++.+|+|...|++.++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s-------~~i~~~~~~~--~~~~~~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-S-------EKLNSEAVNR--GEEPESETLPKITKLPTVALL 426 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-C-------CcEEEEEecc--ccchhhHhhcCCCcCCEEEEE
Confidence 45556555555568888898999999998888888753 2 4688877785 457889999999999999997
Q ss_pred c-CCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 136 S-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 136 ~-~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
. +|.. . . ..|.|-..=.++..||...+
T Consensus 427 ~~~~~~-~----------~-i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 427 DDDGNY-T----------G-LKFHGVPSGHELNSFILALY 454 (555)
T ss_pred eCCCcc-c----------c-eEEEecCccHhHHHHHHHHH
Confidence 4 3311 0 0 34556555566666665544
No 213
>PRK10824 glutaredoxin-4; Provisional
Probab=88.90 E-value=0.85 Score=39.57 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCeEEEEEec-----CCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCc
Q 010178 56 FDAVLRDTPATYAVVEFFA-----NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGH 128 (516)
Q Consensus 56 f~~~l~~~~~k~vlV~FyA-----~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~ 128 (516)
.++.+.++ + +|.|-. ||||+|++..-.+.++.- .+..+|...+. -..+-+.-|-+.
T Consensus 8 v~~~I~~~---~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i-------------~~~~idi~~d~~~~~~l~~~sg~~T 70 (115)
T PRK10824 8 IQRQIAEN---P-ILLYMKGSPKLPSCGFSAQAVQALSACGE-------------RFAYVDILQNPDIRAELPKYANWPT 70 (115)
T ss_pred HHHHHhcC---C-EEEEECCCCCCCCCchHHHHHHHHHHcCC-------------CceEEEecCCHHHHHHHHHHhCCCC
Confidence 45556553 3 455554 599999999877776532 22234442221 122333346677
Q ss_pred cCeEEEecCCccc
Q 010178 129 YPMLLWGSPSKFV 141 (516)
Q Consensus 129 ~PTl~~f~~g~~~ 141 (516)
+|.+++ +|++.
T Consensus 71 VPQIFI--~G~~I 81 (115)
T PRK10824 71 FPQLWV--DGELV 81 (115)
T ss_pred CCeEEE--CCEEE
Confidence 888876 44444
No 214
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=88.76 E-value=5.7 Score=39.12 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=31.2
Q ss_pred cCCCCeEEEEEecCCChh-hhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 62 DTPATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 62 ~~~~k~vlV~FyA~WC~~-C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
+..++|+|++|-=+.||. |-.+...+.++-+++..... .+..-.|+.+|-+
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~-~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPG-LPPVPLFISVDPE 187 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCC-CCccceEEEeCcc
Confidence 345799999999999985 66665555555555543221 1112356667653
No 215
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=5.5 Score=38.81 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=29.8
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHh
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~ 94 (516)
+..++.+.-.-.+.+..++..++.|+..-||+|+...|.+++.....
T Consensus 67 ~~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 67 VLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred eeeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 34444444333344433467889999999999988887777744443
No 216
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=1.6 Score=37.21 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=43.5
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHH----hCCCCccC
Q 010178 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD----KFSVGHYP 130 (516)
Q Consensus 55 ~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~----~~~I~~~P 130 (516)
.++.++..+ + +|.|--+||+.|++..-.|.+ +. ....++.+|-. +...++-+ --+-+.+|
T Consensus 6 ~v~~~i~~~---~-VVifSKs~C~~c~~~k~ll~~----~~-------v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 6 KVRKMISEN---P-VVIFSKSSCPYCHRAKELLSD----LG-------VNPKVVELDED-EDGSEIQKALKKLTGQRTVP 69 (104)
T ss_pred HHHHHhhcC---C-EEEEECCcCchHHHHHHHHHh----CC-------CCCEEEEccCC-CCcHHHHHHHHHhcCCCCCC
Confidence 355566653 3 688999999999997766655 32 23567777743 22334433 23456889
Q ss_pred eEEEecCCcccC
Q 010178 131 MLLWGSPSKFVA 142 (516)
Q Consensus 131 Tl~~f~~g~~~~ 142 (516)
.+++ +|++..
T Consensus 70 ~vFI--~Gk~iG 79 (104)
T KOG1752|consen 70 NVFI--GGKFIG 79 (104)
T ss_pred EEEE--CCEEEc
Confidence 8877 454543
No 217
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.27 E-value=2.4 Score=37.74 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=48.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC----ccCeEEEecCCcccCCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----HYPMLLWGSPSKFVAGS 144 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~----~~PTl~~f~~g~~~~~~ 144 (516)
++.|++|.||-|......++ ++- +.+-.+.. ++-..+-+++||. +-=|.++ +|
T Consensus 28 ~~vyksPnCGCC~~w~~~mk--~~G-----------f~Vk~~~~--~d~~alK~~~gIp~e~~SCHT~VI--~G------ 84 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK--ANG-----------FEVKVVET--DDFLALKRRLGIPYEMQSCHTAVI--NG------ 84 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH--hCC-----------cEEEEeec--CcHHHHHHhcCCChhhccccEEEE--cC------
Confidence 78899999999998776665 222 34444442 2345666778774 4445554 22
Q ss_pred CCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 145 WEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
..+.|...+++|..++++.-
T Consensus 85 ----------y~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 85 ----------YYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred ----------EEEeccCCHHHHHHHHhCCC
Confidence 33578899999999987653
No 218
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=82.01 E-value=11 Score=36.04 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=49.5
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCCh-hhhhhhHHHHHHHHHhC-CCCCCCCCe--EEEEEEeccccccHHHHHhCC
Q 010178 50 ELNATNFDAVLRDTPATYAVVEFFANWCP-ACRNYKPQYEKVARLFN-GPNAAHPGI--ILMTRVDCALKINTNLCDKFS 125 (516)
Q Consensus 50 ~L~~~~f~~~l~~~~~k~vlV~FyA~WC~-~C~~~~P~~~~la~~~~-~~~~~~~~~--v~~~~VDc~~d~~~~l~~~~~ 125 (516)
.-+++.|.. .+.++++++|.|.=+.|| -|-.....+.++.+++. ..+ .. +.++.||-..| .++..++|.
T Consensus 54 d~~G~~~~~--~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~----~~v~vv~itvDPerD-tp~~lk~Y~ 126 (207)
T COG1999 54 DQDGKPFTL--KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEG----DDVQVVFITVDPERD-TPEVLKKYA 126 (207)
T ss_pred cCCCCEeec--cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccC----CCEEEEEEEECCCCC-CHHHHHHHh
Confidence 334444443 233568999999888886 49888888888888886 322 33 45555555433 477888888
Q ss_pred C-CccCeEE
Q 010178 126 V-GHYPMLL 133 (516)
Q Consensus 126 I-~~~PTl~ 133 (516)
. ...|-+.
T Consensus 127 ~~~~~~~~~ 135 (207)
T COG1999 127 ELNFDPRWI 135 (207)
T ss_pred cccCCCCee
Confidence 7 4455443
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=80.33 E-value=3.1 Score=44.32 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc-HHHHHh---------CCCCccCeEEE
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-TNLCDK---------FSVGHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~-~~l~~~---------~~I~~~PTl~~ 134 (516)
++.|..+|||+|++..-.+++. .|.+-.+|++.+.. .++..+ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6889999999999987666542 15566677643221 122122 47789999977
No 220
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=79.63 E-value=4.5 Score=37.59 Aligned_cols=71 Identities=10% Similarity=0.212 Sum_probs=44.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCC-hhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc-cHHHHHhC
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWC-PACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKF 124 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC-~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~~ 124 (516)
.++-+++.+. ..+.+++++||.|.=+.| ..|-.....+.++.+.+.+.+ ..+.++.|.++-+. .++..++|
T Consensus 37 L~d~~G~~~~--~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~----~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 37 LTDQDGKTVT--LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEG----KDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp EEETTSSEEE--GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTT----TTEEEEEEESSTTTC-HHHHHHH
T ss_pred EEcCCCCEec--HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhcc----CceEEEEEEeCCCCCCHHHHHHH
Confidence 3344444444 233457999999999999 569888888888888776432 34666666664332 34555554
No 221
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=77.27 E-value=11 Score=35.53 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 64 ~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
.++|+++-|| ++.-+-|--+...+.+.+.++++.+ +.++.+.++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g------~eVigvS~D 76 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG------VEVIGVSTD 76 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC------CEEEEEecC
Confidence 3588777777 7778888889999999999987654 566666654
No 222
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=77.01 E-value=25 Score=29.87 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=59.6
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCe
Q 010178 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (516)
Q Consensus 52 ~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PT 131 (516)
+.++++..+.... +.++|=|+..-=+ .....|.++|..+.+ ...|+... +..+..++++. .|+
T Consensus 7 s~~ele~f~~~~~-~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-------d~~F~~t~-----~~~~~~~~~~~-~~~ 69 (107)
T cd03068 7 TLKQVQEFLRDGD-DVIIIGVFSGEED---PAYQLYQDAANSLRE-------DYKFHHTF-----DSEIFKSLKVS-PGQ 69 (107)
T ss_pred CHHHHHHHHhcCC-CEEEEEEECCCCC---HHHHHHHHHHHhccc-------CCEEEEEC-----hHHHHHhcCCC-CCc
Confidence 3455666665431 4556666665322 356778899998853 46675544 35677888886 577
Q ss_pred EEEecCCcccCCCCCCCccccchhhcccc-CCHHH-HHHHHHHh
Q 010178 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADG-LLTWINKQ 173 (516)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~e~-L~~~i~~~ 173 (516)
+++|.|..+... .. +....|.|. .+.++ |.+||.++
T Consensus 70 vvl~rp~~~~~k-~e-----~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 70 LVVFQPEKFQSK-YE-----PKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred eEEECcHHHhhh-cC-----cceeeeeccccchHHHHHHHHhcC
Confidence 888766544311 01 222456666 45655 99999753
No 223
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.58 E-value=9.3 Score=42.70 Aligned_cols=78 Identities=13% Similarity=0.273 Sum_probs=53.1
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC---
Q 010178 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF--- 124 (516)
Q Consensus 51 L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~-~--~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~--- 124 (516)
-..+.|...-.. +||++|..-.+||.-|+.|+.+ | .++|+-++ ..++-++|| .++-+++-+-|
T Consensus 31 W~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-------~~FV~IKVD--REERPDvD~~Ym~~ 99 (667)
T COG1331 31 WGEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-------ENFVPVKVD--REERPDVDSLYMNA 99 (667)
T ss_pred cCHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-------hCceeeeEC--hhhccCHHHHHHHH
Confidence 456777765554 5999999999999999999754 3 46777776 246667777 45555554433
Q ss_pred ----C-CCccC-eEEEecCCc
Q 010178 125 ----S-VGHYP-MLLWGSPSK 139 (516)
Q Consensus 125 ----~-I~~~P-Tl~~f~~g~ 139 (516)
. --|.| |+++-|+|+
T Consensus 100 ~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 100 SQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HHHhccCCCCceeEEECCCCc
Confidence 3 34789 555556665
No 224
>PTZ00062 glutaredoxin; Provisional
Probab=71.93 E-value=5.7 Score=38.10 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=29.9
Q ss_pred cCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccccc--HHHHHhCCCCccCeEEE
Q 010178 74 ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN--TNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 74 A~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~--~~l~~~~~I~~~PTl~~ 134 (516)
+|+||.|++..-.+++. .+.+..+|...+.. ..+-+.-|-..+|.+++
T Consensus 125 ~p~C~~C~~~k~~L~~~-------------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS-------------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCCChhHHHHHHHHHHc-------------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 37999999988777643 14555667643221 22333446778888876
No 225
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=70.01 E-value=14 Score=31.67 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=42.7
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc
Q 010178 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL 114 (516)
Q Consensus 49 ~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~ 114 (516)
..++++.++ +.+.+++++||.=-|+-||.=. --..+++|.++|++. .+.|.++-|.+
T Consensus 7 ~~~~G~~v~--l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~------gl~ILaFPcnq 63 (108)
T PF00255_consen 7 KDIDGKPVS--LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK------GLEILAFPCNQ 63 (108)
T ss_dssp EBTTSSEEE--GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG------TEEEEEEEBST
T ss_pred eCCCCCEEC--HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC------CeEEEeeehHH
Confidence 344444444 4556679999999999999888 556889999999753 48899998853
No 226
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.98 E-value=6.3 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhh--hhHHHHHHHHHhhh
Q 010178 482 VGAALAIALASCA--FGALACYWRSQQKN 508 (516)
Q Consensus 482 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 508 (516)
|-++|.+.++-.. +-+-+||+|+++.+
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4444444444443 44556887666543
No 227
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=64.03 E-value=5.1 Score=36.35 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHhCCC
Q 010178 432 WDQDEVFKFLTNYYGNT 448 (516)
Q Consensus 432 w~~~~V~~fL~~~Y~~~ 448 (516)
.++++|++|+++.||..
T Consensus 74 ~s~~eI~~~~v~rYG~~ 90 (148)
T PF03918_consen 74 KSDEEIIDYFVERYGEF 90 (148)
T ss_dssp --HHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcCcc
Confidence 78899999999999986
No 228
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=62 Score=29.57 Aligned_cols=75 Identities=15% Similarity=0.317 Sum_probs=46.8
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc---------cccH
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINT 118 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~---------d~~~ 118 (516)
+..++++.+. +.+.+++++||-=.|+-||.=-++ ..++.|.+.|++. .+.+..+-|.+ ++-.
T Consensus 10 ~~~~~G~~~~--l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~------Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 10 VKDIDGEPVS--LSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDK------GFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred eeccCCCCcc--HHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhC------CcEEEeccccccccCCCCCHHHHH
Confidence 4455555554 555667999999999999953322 2345566777653 38888888853 1112
Q ss_pred HHHH-hCCCCccCeE
Q 010178 119 NLCD-KFSVGHYPML 132 (516)
Q Consensus 119 ~l~~-~~~I~~~PTl 132 (516)
+.|+ .|||+ +|.+
T Consensus 81 ~fC~~~YgVt-Fp~f 94 (162)
T COG0386 81 KFCQLNYGVT-FPMF 94 (162)
T ss_pred HHHHhccCce-eeee
Confidence 3453 57776 5654
No 229
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=56.28 E-value=1.4e+02 Score=26.59 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=60.3
Q ss_pred CCeEEEEEecCCChhhhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEEeccccccH----------------HHHHhCC
Q 010178 65 ATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINT----------------NLCDKFS 125 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~---~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~----------------~l~~~~~ 125 (516)
.|+.+|+..++--..+..|--.. +.+-+-++ .++.+-.-|.+.+++. ...+.++
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-------~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~ 93 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-------QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIK 93 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-------cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcC
Confidence 48889999888764333333222 22333333 2477778888765543 2566788
Q ss_pred CCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhc
Q 010178 126 VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (516)
Q Consensus 126 I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l 174 (516)
...||.+.++-... + .-..+..+.|..+.++++.-+.+.+
T Consensus 94 ~~~fP~~avI~~~~--~-------~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 94 TDQLPAILIIMGKR--S-------SNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred cCCCCeEEEEEecC--C-------ceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99999988863211 0 1255677899999999998887654
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=56.03 E-value=22 Score=27.18 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=33.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
+.|+.+||+.|++..-.+++..-. +.+..+|.. +...++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~-----------~e~~~v~~~-~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT-----------VELREVELK-NKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC-----------cEEEEeCCC-CCCHHHHHHCCCCCCCEEEE
Confidence 457789999999886555433221 445556643 23345656666778999965
No 231
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=54.86 E-value=17 Score=28.10 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred hccCChHHHHHHHHHHhcCCCCCCChhHHHHHHH-Hhhhh
Q 010178 345 NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLW-STHNQ 383 (516)
Q Consensus 345 ~ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw-~~HN~ 383 (516)
.-.||.+||.|=.+.+.++...-++--.-++... +.+|.
T Consensus 14 ~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNn 53 (70)
T PF04805_consen 14 STLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNN 53 (70)
T ss_pred hcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHH
Confidence 3479999999999888765333222223444444 66664
No 232
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=54.65 E-value=25 Score=30.94 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=16.1
Q ss_pred CCChHHHHHHHHHHhCCC
Q 010178 431 DWDQDEVFKFLTNYYGNT 448 (516)
Q Consensus 431 ~w~~~~V~~fL~~~Y~~~ 448 (516)
..+++||..||++.||.-
T Consensus 73 G~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 73 GKSEVEIIGWMTERYGDF 90 (126)
T ss_pred CCCHHHHHHHHHHhcCCe
Confidence 378899999999999986
No 233
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=54.22 E-value=14 Score=23.74 Aligned_cols=28 Identities=46% Similarity=0.650 Sum_probs=12.3
Q ss_pred cccccccccceeeeHHHHHHHHHHHhhhhHHHH
Q 010178 468 LEDLVVSTNAVVVPVGAALAIALASCAFGALAC 500 (516)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (516)
+.|++.++- ||+|+..+ |++| +.|+|.|
T Consensus 3 i~dhspttg--vvti~vil-iava--alg~lic 30 (33)
T PF09049_consen 3 ITDHSPTTG--VVTIIVIL-IAVA--ALGALIC 30 (33)
T ss_dssp S-TTTTHHH--HHHHHHHH-HHHH--HHHHHHH
T ss_pred cccCCCCcc--EEEehhHH-HHHH--HHhhhhe
Confidence 445554443 34554433 4444 4445444
No 234
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=54.10 E-value=2.3 Score=28.76 Aligned_cols=16 Identities=25% Similarity=0.968 Sum_probs=10.5
Q ss_pred CCCCCCCCCChhhhcc
Q 010178 404 KIIWPPKQLCSSCYRS 419 (516)
Q Consensus 404 k~~~P~~~~Cp~C~~~ 419 (516)
.++|||...||.|+..
T Consensus 19 ~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 19 RVQFPPRPVCPHCGSD 34 (37)
T ss_dssp -EEES--SEETTTT--
T ss_pred CEecCCCcCCCCcCcc
Confidence 5899999999999753
No 235
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=51.76 E-value=1e+02 Score=23.66 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=41.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCC
Q 010178 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~ 148 (516)
+..|+.+.|+.|++.+-.+....-. +.+..+|. ....++ ..-+-..+|++..-..| .+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-----------y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~---~~----- 59 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-----------YEVVEVNP--VSRKEI-KWSSYKKVPILRVESGG---DG----- 59 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-----------eEEEECCc--hhHHHH-HHhCCCccCEEEECCCC---Cc-----
Confidence 4567789999999988544433211 22333332 112233 33455678998752110 00
Q ss_pred ccccchhhccccCCHHHHHHHHHHhcc
Q 010178 149 QEKKEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 149 ~~~~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
. . -.+...|..+|++++|
T Consensus 60 ---~--~----l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 60 ---Q--Q----LVDSSVIISTLKTYLG 77 (77)
T ss_pred ---c--E----EEcHHHHHHHHHHHcC
Confidence 0 0 1356778888888764
No 236
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=51.68 E-value=57 Score=28.02 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecC
Q 010178 82 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 137 (516)
Q Consensus 82 ~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~ 137 (516)
.+.++...+.+-..+.+ .. ..|.. ++.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~----~~---~~v~I----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDD----PC---PGVQI----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccC----CC---cceeE----ChhHHhhCCceEcCEEEEEcC
Confidence 67888877777665432 11 23332 589999999999999999766
No 237
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=51.67 E-value=58 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=44.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 68 vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
.|..|-+.--+..++....+.++-+++.+ +...+-.||. .++++++..++|-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~------~~~~LeVIDv--~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG------GPYELEVIDV--LKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC------CcEEEEEEEc--ccCHhHHhhCCEEEechhhh
Confidence 34455555557777777777777777653 5678888887 47899999999999999864
No 238
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.65 E-value=18 Score=30.18 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=7.6
Q ss_pred CCChhhHHHHHHHHHHH
Q 010178 1 MSRRPAILIVNLLLCLL 17 (516)
Q Consensus 1 M~rr~~~l~lllll~ll 17 (516)
|..|.++++.++++++|
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 66555444433333333
No 239
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=49.88 E-value=16 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcC
Q 010178 488 IALASCAFGALACYWRSQQKNRK 510 (516)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~ 510 (516)
++++.|++-++..| |+-|.|++
T Consensus 17 Vglv~i~iva~~iY-RKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIY-RKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 67788888888888 77777664
No 240
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=47.18 E-value=36 Score=30.00 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHhCCC
Q 010178 431 DWDQDEVFKFLTNYYGNT 448 (516)
Q Consensus 431 ~w~~~~V~~fL~~~Y~~~ 448 (516)
..+++||.+|+++.||.-
T Consensus 73 G~Sd~eI~~~~v~RYG~~ 90 (126)
T TIGR03147 73 GKSNQQIIDFMTARFGDF 90 (126)
T ss_pred CCCHHHHHHHHHHhcCCe
Confidence 378899999999999986
No 241
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=45.97 E-value=22 Score=32.25 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=33.6
Q ss_pred EEEEecC------CChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhCCC----CccCeEEE
Q 010178 69 VVEFFAN------WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSV----GHYPMLLW 134 (516)
Q Consensus 69 lV~FyA~------WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~~I----~~~PTl~~ 134 (516)
+|.|..+ +|++|++..-.++.+ .|.+-.+|.+.+ ...++.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899999988777643 155666776432 12334444454 67888876
No 242
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.93 E-value=47 Score=25.88 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=28.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccc--cHHHHHhCCCCccCeEEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~~~I~~~PTl~~ 134 (516)
..++.++|+.|++.+-.+++.. +.+-.+++..+. ..++-...+-..+|++..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-------------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-------------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-------------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 4566789999998765554432 222223432221 223333345567899864
No 243
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=45.72 E-value=1.1e+02 Score=32.58 Aligned_cols=99 Identities=10% Similarity=0.165 Sum_probs=60.2
Q ss_pred cHHHHHhcCC-CCeEEEEEecCCChhhhhhh-HHH-HHH-HHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccC
Q 010178 55 NFDAVLRDTP-ATYAVVEFFANWCPACRNYK-PQY-EKV-ARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (516)
Q Consensus 55 ~f~~~l~~~~-~k~vlV~FyA~WC~~C~~~~-P~~-~~l-a~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~P 130 (516)
++...|...+ ++.++|.|-+.--...+.+. -.| ... ++... ..+..++|+.......++..-|.+..+|
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls-------~~fVaIkiqags~aa~qFs~IYp~v~vP 79 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS-------KYFVAIKIQAGSVAATQFSAIYPYVSVP 79 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh-------cceEEEEeccCchhhhhhhhhccccccc
Confidence 3444444333 35577888777655555554 122 222 22221 2355666765444556777888999999
Q ss_pred eEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHH
Q 010178 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (516)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~ 172 (516)
.++|+.. ++..+..+.|..++++|..-|.+
T Consensus 80 s~ffIg~------------sGtpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 80 SIFFIGF------------SGTPLEVITGFVTADELASSIEK 109 (506)
T ss_pred ceeeecC------------CCceeEEeeccccHHHHHHHHHH
Confidence 9988642 12455778888899999877765
No 244
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.14 E-value=28 Score=33.87 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 118 ~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
...+++.||+++||++| .++ ..+.|..+.+.+..-|.+.++.
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~---------------~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGK---------------YAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHHCCCccCceEEE--cCc---------------EeecCCCCHHHHHHHHHHHHhc
Confidence 45678999999999998 221 3357889999999999888764
No 245
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=44.50 E-value=79 Score=26.00 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=48.1
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
.++|=.|.|.--+..++....+.++-+++.. +...+-.||. .+++++++.++|-++||++=
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~------g~y~LeVIDv--~~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ------GVYALKVIDV--LKNPQLAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEc--ccCHhHHhHCCEEEecHHhh
Confidence 4566777788888888888888887776543 4577777887 47899999999999999864
No 246
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=44.10 E-value=41 Score=25.37 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccc--cccHHHHHhCCCCccCeEEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~--d~~~~l~~~~~I~~~PTl~~ 134 (516)
..|+.++|+.|++..-.+....-. +....+|... ....++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-----------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-----------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-----------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999988666544222 2334444321 12234555555667899865
No 247
>PRK09301 circadian clock protein KaiB; Provisional
Probab=44.05 E-value=76 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 65 ~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
+.++|=.|.|.--+..++....+.++-+.+.. +...+-.||. .++++++..++|-++||++=
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~------g~y~LeVIDv--~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK------GVYALKVIDV--LKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEc--ccCHhHHhHCCeEEecHHhh
Confidence 36677888898888888888888887776543 4477777887 47899999999999999763
No 248
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.07 E-value=46 Score=29.49 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=34.8
Q ss_pred cHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHh
Q 010178 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~ 173 (516)
++.+.++|+|+.+|++++.+++..-.+. .+ ..........|..+.+.-++.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~-~~-~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPE-QP-CPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCccccc-CC-CCCCCeeEEEecccHHHHHHHHHHh
Confidence 5899999999999999998765311110 01 0112334556777777777666543
No 249
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=42.41 E-value=41 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=31.0
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEE
Q 010178 71 EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 71 ~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~ 134 (516)
.|+.++|+.|++..-.++...-. +....++-..+....+-...+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 47788999999877665544222 334444432211122445566778898875
No 250
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.43 E-value=32 Score=34.64 Aligned_cols=40 Identities=10% Similarity=-0.028 Sum_probs=25.7
Q ss_pred ccceeeeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCC
Q 010178 475 TNAVVVPVGAALAIALASCAFGALACYWRSQQKNRKPRRS 514 (516)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (516)
..+.||-|+.|+|+++.-++..+=+..-|.+.||.+|.+.
T Consensus 225 ~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~ 264 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPA 264 (281)
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCC
Confidence 4578999999888877654332222222577777788654
No 251
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=39.99 E-value=35 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred cccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchh-hccccCCHHHHHHHHH
Q 010178 115 KINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR-ALEDWQTADGLLTWIN 171 (516)
Q Consensus 115 d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~-~~~G~~~~e~L~~~i~ 171 (516)
.++...+.++||.|+||+++ +| . .+.|....+.|.+.|.
T Consensus 154 ~~~~~~a~~~gv~GvP~~vv--~g----------------~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 154 EEDTAEARQLGVFGVPTFVV--NG----------------KYRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHTTCSSSSEEEE--TT----------------TEEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCEEEE--CC----------------EEEEECCCCHHHHHHHhC
No 252
>PHA03075 glutaredoxin-like protein; Provisional
Probab=39.14 E-value=44 Score=28.95 Aligned_cols=29 Identities=10% Similarity=0.348 Sum_probs=25.3
Q ss_pred CeEEEEEecCCChhhhhhhHHHHHHHHHh
Q 010178 66 TYAVVEFFANWCPACRNYKPQYEKVARLF 94 (516)
Q Consensus 66 k~vlV~FyA~WC~~C~~~~P~~~~la~~~ 94 (516)
|.++|.|.-|-|+-|......++++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 44799999999999999998888887776
No 253
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=37.11 E-value=25 Score=34.77 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCChhhhhhhHHHHHHHHHh
Q 010178 64 PATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (516)
Q Consensus 64 ~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~ 94 (516)
++|+.++..-+.|||.|-..+=.+-.+-.+|
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 4689999999999999988763333333444
No 254
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=37.09 E-value=17 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhHHH---HHHHHHhhhcCCCC
Q 010178 486 LAIALASCAFGALA---CYWRSQQKNRKPRR 513 (516)
Q Consensus 486 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 513 (516)
+|.++.|.|+.+|+ +||+.++||||-+|
T Consensus 83 ~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr 113 (129)
T PF15099_consen 83 FGPVLLSLGLMLLACSALCWKPIIRKKKKKR 113 (129)
T ss_pred ehHHHHHHHHHHHHhhhheehhhhHhHHHHh
Confidence 34445555555544 46877776665443
No 255
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=36.35 E-value=2e+02 Score=22.07 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=44.9
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccc
Q 010178 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEK 151 (516)
Q Consensus 72 FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~ 151 (516)
++.++|+.|++..=.++ +++ =.+.+..++.. +....+.....-..+|++. . +|..
T Consensus 2 y~~~~Sp~~~kv~~~l~-----~~~------i~~~~~~v~~~-~~~~~~~~~~p~~~vPvL~-~-~g~~----------- 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALE-----EKG------IPYELVPVDPE-EKRPEFLKLNPKGKVPVLV-D-DGEV----------- 56 (75)
T ss_dssp EEETTSHHHHHHHHHHH-----HHT------EEEEEEEEBTT-STSHHHHHHSTTSBSSEEE-E-TTEE-----------
T ss_pred CCcCCChHHHHHHHHHH-----HcC------CeEEEeccCcc-cchhHHHhhcccccceEEE-E-CCEE-----------
Confidence 67899999999764433 222 12455556643 2346677777778899997 2 2321
Q ss_pred cchhhccccCCHHHHHHHHHHhcc
Q 010178 152 KEIRALEDWQTADGLLTWINKQTS 175 (516)
Q Consensus 152 ~~v~~~~G~~~~e~L~~~i~~~l~ 175 (516)
-.+...|+++|+++.+
T Consensus 57 --------l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 57 --------LTDSAAIIEYLEERYP 72 (75)
T ss_dssp --------EESHHHHHHHHHHHST
T ss_pred --------EeCHHHHHHHHHHHcC
Confidence 1356788888888764
No 256
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.22 E-value=32 Score=32.07 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=27.0
Q ss_pred ccHHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHH
Q 010178 116 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (516)
Q Consensus 116 ~~~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i 170 (516)
++...+.+.||.|+||+++ +|+ ..+.|..+.+.+.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~---------------~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK---------------YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe---------------EeecCCCCHHHHHHHh
Confidence 3456778899999999988 221 2246778888877655
No 257
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=35.77 E-value=68 Score=31.36 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=40.3
Q ss_pred HhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEec
Q 010178 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (516)
Q Consensus 60 l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc 112 (516)
+.+..+.++||-+-..+|..|..-+..++.|..++...+ -..|.|..||-
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g---~~~I~f~vVN~ 70 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEG---LSNISFMVVNH 70 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC---CCceEEEEEcC
Confidence 455567888999998999999999999999988776543 24689999985
No 258
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=35.06 E-value=33 Score=28.73 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.3
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 010178 70 VEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~ 89 (516)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 56889999999998766654
No 259
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=34.77 E-value=61 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Q 010178 484 AALAIALASCAFGALACYWRSQQKNRKPR 512 (516)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (516)
+.+|++|.-+.+.-|.+|.++++++|.+.
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 44555544444434445544444444443
No 260
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=58 Score=30.97 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHhCCCCccCeEEEecCCcccCCCCCCCccccchhhccc--cCCHHHHHHHHHHhc
Q 010178 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED--WQTADGLLTWINKQT 174 (516)
Q Consensus 118 ~~l~~~~~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G--~~~~e~L~~~i~~~l 174 (516)
..++++.++.||||+.+-.+|+..- .-.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~-------------l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYV-------------LGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEe-------------ccCCcccCCcHHHHHHHHHHH
Confidence 5688999999999999977765321 1122 346678888877664
No 261
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=32.56 E-value=35 Score=30.67 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCC
Q 010178 488 IALASCAFGALACYWRSQQKNRKPRR 513 (516)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (516)
+++.-.+++.++++++.+.++++|||
T Consensus 27 ~~lll~~~~~~~~~~~r~~~~~~yrr 52 (146)
T PF14316_consen 27 LALLLLLLILLLWRLWRRWRRNRYRR 52 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 33333344455555556666677876
No 262
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=32.39 E-value=45 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHh
Q 010178 483 GAALAIALASCAFGALACYWRSQQ 506 (516)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (516)
+-+++++|++...|.+.||-|.+-
T Consensus 22 ~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 22 MGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred hccHHHHHHHHHHHHHHhhhhhcc
Confidence 445567888888888888877776
No 263
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=31.81 E-value=41 Score=26.54 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.0
Q ss_pred eeeeHHHHHHHHHHHhhhhHH
Q 010178 478 VVVPVGAALAIALASCAFGAL 498 (516)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~ 498 (516)
-++|+.+++|++++.|++-++
T Consensus 5 el~PL~~~vg~a~~~a~~~~~ 25 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLY 25 (73)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 478999999999988887443
No 264
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=31.59 E-value=3.5e+02 Score=28.21 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=56.6
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhC
Q 010178 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (516)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~ 124 (516)
.++|..++.+.=.....+-...+.||=|+-+--+. --..|+++|..|. +-|.|.++= ++.++++.
T Consensus 145 edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~---~yk~FeeAAe~F~-------p~IkFfAtf-----d~~vAk~L 209 (383)
T PF01216_consen 145 EDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQ-------PYIKFFATF-----DKKVAKKL 209 (383)
T ss_dssp SSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH---HHHHHHHHHHHCT-------TTSEEEEE------SHHHHHHH
T ss_pred ccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH---HHHHHHHHHHhhc-------CceeEEEEe-----cchhhhhc
Confidence 34565555433222222222356678877764221 2346778999996 467887754 57899999
Q ss_pred CCCccCeEEEecCCcccCCCCCCCccccchhhccccCCHHHHHHHHHHhccc
Q 010178 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (516)
Q Consensus 125 ~I~~~PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~~~l~~ 176 (516)
++. .=.+-+|.+- .. ..+..-..+.+.++|++||+++-.+
T Consensus 210 ~lK-~nev~fyepF--~~---------~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 210 GLK-LNEVDFYEPF--MD---------EPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp T-S-TT-EEEE-TT--SS---------SEEEESSSS--HHHHHHHHHHT-S-
T ss_pred Ccc-ccceeeeccc--cC---------CCccCCCCCCCHHHHHHHHHHhchh
Confidence 997 6677787662 21 1122222356889999999998654
No 265
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=31.41 E-value=41 Score=28.45 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=15.9
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 010178 70 VEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~ 89 (516)
..|+.++|+.|++..-.+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999997765554
No 266
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=81 Score=29.18 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=44.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecc
Q 010178 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (516)
Q Consensus 48 v~~L~~~~f~~~l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~ 113 (516)
+..++++.+. +.+.+++++||.=-||-||.=..--..+..|.+.|++. .+.+.+.-|.
T Consensus 19 ~~d~~G~~v~--l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~------Gl~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVS--LSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ------GLEILAFPCN 76 (171)
T ss_pred EecCCCCCcc--HHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC------CeEEEEeccc
Confidence 4455555554 55566798888889999998885556889999999763 4889999985
No 267
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=30.46 E-value=69 Score=24.30 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=31.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEecccc--ccHHHHHhCCCCccCeEEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~~~I~~~PTl~~ 134 (516)
..|+.+.|+.|++..-.++...-. +....+|.... ...++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~-----------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE-----------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC-----------CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 357889999999776555443222 33444553211 2245555555667899964
No 268
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.77 E-value=69 Score=24.36 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Q 010178 482 VGAALAIALASCAFGALACYWRSQQKNRKPR 512 (516)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (516)
|-+++.+.|.+.+|.+++.- +.++.+|+..
T Consensus 7 ifL~l~~~LsA~~FSasamA-a~~~~~~~~~ 36 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMA-ADSSPHRKPA 36 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HhhCCCCCCc
Confidence 56788899999999999988 7888877653
No 269
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=28.06 E-value=61 Score=29.78 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=15.2
Q ss_pred cHHHHHhCCCCccCeEEE
Q 010178 117 NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~ 134 (516)
+...+.+.||.|+||+++
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 445678899999999988
No 270
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=27.83 E-value=69 Score=23.63 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.3
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHH
Q 010178 480 VPVGAALAIALASCAFGALACYW 502 (516)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~ 502 (516)
.-||+||++++ |.+|.+|-.|-
T Consensus 23 a~IGtalGvai-sAgFLaLKicm 44 (61)
T PF14986_consen 23 AIIGTALGVAI-SAGFLALKICM 44 (61)
T ss_pred eeehhHHHHHH-HHHHHHHHHHH
Confidence 56899999987 67888887663
No 271
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=27.16 E-value=80 Score=23.81 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=30.3
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEE
Q 010178 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~ 133 (516)
..|+.++|+.|++..-.++...-. +....+|.. ....++........+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-----------~~~~~v~~~-~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-----------VEIIDVDPD-NPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-----------cEEEEcCCC-CCCHHHHhhCCCCCCCEEE
Confidence 457789999999987555443222 233344532 2234444445566789775
No 272
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=25.44 E-value=63 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=13.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhh
Q 010178 1 MSRRPAILIVNLLLCLLLRSEA 22 (516)
Q Consensus 1 M~rr~~~l~lllll~ll~~~~~ 22 (516)
|.||.+|+.++.+-+++++++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 7888777666555555444433
No 273
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.81 E-value=2.8e+02 Score=29.13 Aligned_cols=85 Identities=14% Similarity=0.233 Sum_probs=55.6
Q ss_pred HhcCCCCeEEEEEecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCCccCeEEEecCCc
Q 010178 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139 (516)
Q Consensus 60 l~~~~~k~vlV~FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~~~PTl~~f~~g~ 139 (516)
+.+-.+..-+=-|++-.|..|-..-..++-++- ++ ++|.-.+||-+ -.++-...-+|.++||+++ +|+
T Consensus 111 ik~i~g~~~FETy~SltC~nCPDVVQALN~msv-lN-------p~I~H~~IdGa--~Fq~Evear~IMaVPtvfl--nGe 178 (520)
T COG3634 111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV-LN-------PRIKHTAIDGA--LFQDEVEARNIMAVPTVFL--NGE 178 (520)
T ss_pred HHhcCCceeEEEEEEeeccCChHHHHHHHHHHh-cC-------CCceeEEecch--hhHhHHHhccceecceEEE--cch
Confidence 334445566777888889999776666654433 33 56888899853 2344455668999999977 221
Q ss_pred ccCCCCCCCccccchhhccccCCHHHHHHHHH
Q 010178 140 FVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (516)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~G~~~~e~L~~~i~ 171 (516)
..-+|.++.++|++-|.
T Consensus 179 ---------------~fg~GRmtleeilaki~ 195 (520)
T COG3634 179 ---------------EFGQGRMTLEEILAKID 195 (520)
T ss_pred ---------------hhcccceeHHHHHHHhc
Confidence 22356778888877664
No 274
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.59 E-value=64 Score=27.43 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.0
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 010178 70 VEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~ 89 (516)
..|..++|+.|++..-.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45789999999998866654
No 275
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=93 Score=29.10 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHhcCCCCeEEEEEe-cCCChhhhhhhHHHHHHHHHhCCCC
Q 010178 59 VLRDTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPN 98 (516)
Q Consensus 59 ~l~~~~~k~vlV~Fy-A~WC~~C~~~~P~~~~la~~~~~~~ 98 (516)
.+.+..++++++-|| ..+-=-|--+.-.|...+.++.+.+
T Consensus 27 ~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n 67 (196)
T KOG0852|consen 27 KLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN 67 (196)
T ss_pred eehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC
Confidence 355556788777777 3443334445555666666666543
No 276
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=24.35 E-value=39 Score=21.32 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.1
Q ss_pred CCCcCcccccHHHHHHHHhc
Q 010178 306 KNDTRGFSCGLWVLLHSLSV 325 (516)
Q Consensus 306 ~~~~Rgy~CglW~lfH~ltv 325 (516)
+.+..|+||. |.++|
T Consensus 7 ~~~~~gipC~-----H~i~v 21 (28)
T smart00575 7 KFQLSGIPCR-----HALAA 21 (28)
T ss_pred CcccCCccHH-----HHHHH
Confidence 6678899998 87776
No 277
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=1.7e+02 Score=26.52 Aligned_cols=16 Identities=13% Similarity=0.573 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHhCCC
Q 010178 433 DQDEVFKFLTNYYGNT 448 (516)
Q Consensus 433 ~~~~V~~fL~~~Y~~~ 448 (516)
.+.+|..|+...||.-
T Consensus 79 S~~qIid~mVaRYG~F 94 (153)
T COG3088 79 SDQQIIDYMVARYGEF 94 (153)
T ss_pred cHHHHHHHHHHhhcce
Confidence 4688999999999874
No 278
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=23.77 E-value=62 Score=31.71 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCCCC-------CCH---HHHHHHHHHhHhc---cCChHHHHHHHH
Q 010178 316 LWVLLHSLSVRIDDG-------ESQ---FTFTAVCDFIHNF---FVCEECRQHFYQ 358 (516)
Q Consensus 316 lW~lfH~ltv~~~~~-------~~~---~~~~~~~~~v~~f---f~C~~C~~hf~~ 358 (516)
.|=..|.|+.-.+|- .-. ..+..|+..+.+. ..|.-||+|+..
T Consensus 108 IWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 108 IWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 599999999865541 112 2345555555553 499999999964
No 279
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=23.51 E-value=80 Score=27.81 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=16.0
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q 010178 69 VVEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 69 lV~FyA~WC~~C~~~~P~~~~ 89 (516)
+..|+.++|+.|++..-.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999997755543
No 280
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=23.45 E-value=2e+02 Score=21.59 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.1
Q ss_pred EEecCCChhhhhhhHHHHH
Q 010178 71 EFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 71 ~FyA~WC~~C~~~~P~~~~ 89 (516)
.++.++|++|++.+-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 4678899999987755543
No 281
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=23.42 E-value=82 Score=28.47 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.6
Q ss_pred cHHHHHhCCCCccCeEEE
Q 010178 117 NTNLCDKFSVGHYPMLLW 134 (516)
Q Consensus 117 ~~~l~~~~~I~~~PTl~~ 134 (516)
+...+.++||.++||+++
T Consensus 132 ~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHcCCCCCCeEEE
Confidence 456788999999999988
No 282
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=22.65 E-value=1.1e+02 Score=29.77 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=27.8
Q ss_pred cccccccccceeeeHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 010178 468 LEDLVVSTNAVVVPVGAALAIALASCAFGALACYWRSQQK 507 (516)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (516)
..-...|.+.+++|+..|+ |.+.-..|..|++|. +=.|
T Consensus 179 t~stspS~S~vilpvvIal-iVitl~vf~LvgLyr-~C~k 216 (259)
T PF07010_consen 179 TSSTSPSYSSVILPVVIAL-IVITLSVFTLVGLYR-MCWK 216 (259)
T ss_pred cccCCccccchhHHHHHHH-HHHHHHHHHHHHHHH-Hhhc
Confidence 3333446677889999888 888888998999984 4443
No 283
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=22.46 E-value=1e+02 Score=30.62 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=25.0
Q ss_pred eeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Q 010178 480 VPVGAALAIALASCAFGALACYWRSQQKNRKP 511 (516)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (516)
.+.+||+|+.+....+.++..+.|...|+++|
T Consensus 248 ~~~aaa~a~il~~~~~~~~~~~~~~~~~~~~~ 279 (280)
T PRK10561 248 LSSSAAQSVVLMFLVIVLTVVQFRYVESKVRY 279 (280)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56788888888888887777777777777766
No 284
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.37 E-value=1.6e+02 Score=29.24 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=11.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhhh
Q 010178 1 MSRRPAILIVNLLLCLLLRSEAA 23 (516)
Q Consensus 1 M~rr~~~l~lllll~ll~~~~~~ 23 (516)
|.+++..+++.+++++++.+++.
T Consensus 1 ~~~~~~~~i~~lll~lllva~C~ 23 (310)
T COG4594 1 MHMKKTAIILTLLLLLLLVAACS 23 (310)
T ss_pred CCchhhHHHHHHHHHHHHHHHhc
Confidence 55665555555555444444333
No 285
>PRK14749 hypothetical protein; Provisional
Probab=21.13 E-value=1.6e+02 Score=19.04 Aligned_cols=18 Identities=28% Similarity=0.652 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 010178 485 ALAIALASCAFGALACYWR 503 (516)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ 503 (516)
.+|+.|| |.||.+..-|-
T Consensus 7 iLG~~lA-c~f~ilna~w~ 24 (30)
T PRK14749 7 FVGILLM-CSLSTLVLVWL 24 (30)
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 4566665 78888888873
No 286
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=20.93 E-value=88 Score=26.30 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=30.3
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCCCCCCCeEEEEEEeccccccHHHHHhCCCC
Q 010178 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (516)
Q Consensus 72 FyA~WC~~C~~~~P~~~~la~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~~~I~ 127 (516)
||-..||-|....-.+++... .+.+.++.+. .+...++.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---------~~~l~~~~~~--~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---------GGRLRFVDIQ--SEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---------CCCEEEEECC--ChhhhhHHHhcCcC
Confidence 789999999999877776511 1356776652 23455566777765
No 287
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.73 E-value=13 Score=25.81 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=9.4
Q ss_pred cceeeeHHHHHHHH
Q 010178 476 NAVVVPVGAALAIA 489 (516)
Q Consensus 476 ~~~~~~~~~~~~~~ 489 (516)
-+|++|++..++++
T Consensus 15 ~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 15 VGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEechHHHHHHH
Confidence 46788888766443
No 288
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=90 Score=34.71 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=33.0
Q ss_pred cceeeeHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCC
Q 010178 476 NAVVVPVGAALAIALASCAFGALACYWRSQQKNRKPRRS 514 (516)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (516)
..-.+|.-+.+++..+.+++..+..-||.+||++|.|+.
T Consensus 988 ~~~~~p~~~~~~a~vV~~~~~v~i~i~~~r~kr~~~r~~ 1026 (1033)
T KOG4266|consen 988 MPFLVPTRWIVLAGVVASGVLVLLSIWRIRQKRGRRRRA 1026 (1033)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceec
Confidence 345678888888888888998888999999999999874
No 289
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.11 E-value=86 Score=26.81 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.1
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 010178 70 VEFFANWCPACRNYKPQYEK 89 (516)
Q Consensus 70 V~FyA~WC~~C~~~~P~~~~ 89 (516)
..|+.++|+.|++..-.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 35789999999998866654
Done!