BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010179
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/481 (56%), Positives = 355/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPGAFG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGAFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 550 bits (1418), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/481 (56%), Positives = 354/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 550 bits (1418), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/481 (56%), Positives = 354/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/481 (56%), Positives = 354/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+H+P++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHWPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/481 (56%), Positives = 353/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIP FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPAPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/481 (56%), Positives = 353/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGPG+L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG F GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFASGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/481 (56%), Positives = 353/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/481 (56%), Positives = 353/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGAGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 352/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG KT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSAKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 545 bits (1403), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 352/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG GK
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKA 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 352/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG FG G T
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGAT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 543 bits (1400), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 352/481 (73%), Gaps = 11/481 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G + +V+GP+V+ADGM GA MYE+VRVG LIGEIIRLEGD A IQVYEETAG+ +P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T LSVELGP +L +I+DGIQRPL+ I ++GD +I RGV+ PAL +D W F PK
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK 123
Query: 142 -KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEF-Q 199
K+G D + GGD+ V E S++ H + +PP G++ +A G Y++++ + +++
Sbjct: 124 AKVG--DKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPS 181
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
G K M Q WPVR RP KL + PL+TGQRV+D FP GGT AIPG G GKT
Sbjct: 182 GEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKT 241
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGRE-ESVMKRTTLVANT 318
V L+K+S++ V+Y+GCGERGNEM +VL +FP+L D + + +M+RT L+ANT
Sbjct: 242 VTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLK----DPKTGKPLMERTVLIANT 297
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
SNMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYP
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 357
Query: 379 AYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGL 438
AYLA++LA FYERAG+V LG R GSV+++GAVSPPGGDFS+PV TL +V+VFW L
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWAL 417
Query: 439 DKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497
D LA+R+HFP++NWL SYS Y A++ ++ + DP++ +R KA +LQ+E +L EIV+
Sbjct: 418 DADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477
Query: 498 V 498
+
Sbjct: 478 I 478
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 536 bits (1382), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/478 (57%), Positives = 350/478 (73%), Gaps = 12/478 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G ++K++GP VIA GM GA MY++ +VG + L+GEIIRL+GD+A +QVYE+T+GL V +P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T PL+VELGPG+L I+DGIQRPL+ I ++G +YI RGV V ALD++ W + P
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG-IYITRGVVVHALDREKKWAWTPM 122
Query: 142 KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGV 201
+ GD + GG + TV E H + +PPD G+V V PAG+Y++++ V+ LE G
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 202 KKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI 261
+ M WPVR RPV KL +TP LTG R+LD LFP +GGT AIPG FG GKTV
Sbjct: 180 E--LKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVT 237
Query: 262 SQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321
Q+L+K+SN+D VVYVGCGERGNEM +VL++FP+LT G +M RT L+ANTSNM
Sbjct: 238 QQSLAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGG---PLMHRTVLIANTSNM 294
Query: 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 381
PVAAREASIY G+TIAEYFRD G++V++MADSTSRWAEALREIS RL EMPA+ GYP YL
Sbjct: 295 PVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYL 354
Query: 382 AARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 441
AARLA+FYERAGKV LGG E G+VTIVGAVSPPGGD S+PVT +TL IV FW LD
Sbjct: 355 AARLAAFYERAGKVITLGGEE--GAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDAS 412
Query: 442 LAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQV 498
LA R+HFP++NW SYS +++AL+ +Y E D+ +R E+LQRE L EIVQ+
Sbjct: 413 LAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQL 470
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/478 (57%), Positives = 349/478 (73%), Gaps = 12/478 (2%)
Query: 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81
G ++K++GP VIA GM GA MY++ +VG + L+GEIIRL+GD+A +QVYE+T+GL V +P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPK 141
V+ T PL+VELGPG+L I+DGIQRPL+ I ++G +YI RGV V ALD++ W + P
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG-IYITRGVVVHALDREKKWAWTPM 122
Query: 142 KIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGV 201
+ GD + GG + TV E H + +PPD G+V V PAG+Y++++ V+ LE G
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGF-THKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 202 KKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI 261
+ M WPVR RPV KL +TP LTG R+LD LFP +GGT AIPG FG GK+V
Sbjct: 180 E--LKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237
Query: 262 SQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321
Q+L+K+SN+D VVYVG GERGNEM +VL++FP+LT G +M RT L+ANTSNM
Sbjct: 238 QQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGG---PLMHRTVLIANTSNM 294
Query: 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 381
PVAAREASIY G+TIAEYFRD G++V++MADSTSRWAEALREIS RL EMPA+ GYP YL
Sbjct: 295 PVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYL 354
Query: 382 AARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 441
AARLA+FYERAGKV LGG E G+VTIVGAVSPPGGD S+PVT +TL IV FW LD
Sbjct: 355 AARLAAFYERAGKVITLGGEE--GAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDAS 412
Query: 442 LAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQV 498
LA R+HFP++NW SYS +++AL+ +Y E D+ +R E+LQRE L EIVQ+
Sbjct: 413 LAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQL 470
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/494 (51%), Positives = 344/494 (69%), Gaps = 6/494 (1%)
Query: 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVN 79
+ G + KVSGP+V+A+ M+ A++ ++ VG +IGEII + D A+IQVYEET+G+
Sbjct: 9 QIGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPG 68
Query: 80 DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQ 139
+PV T + LSVELGPGI+ +FDGIQRPL T + ++ RGV +PALD + W F+
Sbjct: 69 EPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 140 PKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQ 199
I EG ++ GD+ V E ++QH + +P G V + +G +++ D + +E +
Sbjct: 129 AT-IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
K TM+Q WPVR RP+ KL D P++TGQRV+D FP GG A+PG FG GKT
Sbjct: 187 QGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319
V+ ++K+S+ D VVYVGCGERGNEM +V+ +FP+L + ES+M+RT L+ANTS
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPEL---IDPNTGESLMERTVLIANTS 303
Query: 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 379
NMPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALRE+SGRL EMP D GYPA
Sbjct: 304 NMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPA 363
Query: 380 YLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLD 439
YL +RLA +YER+G+V LG +R GS+T + AVSP GGD S+PVT TL +V+VFWGLD
Sbjct: 364 YLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLD 423
Query: 440 KKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQV 498
LAQ++HFPS+NW+ SYS YST + + +Q D+ ++ T+ +LQ E+ LNEIV++
Sbjct: 424 SSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRL 483
Query: 499 GYLWSLSFHSFLCC 512
+ SLS + L
Sbjct: 484 VGIDSLSDNDRLTL 497
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/493 (49%), Positives = 328/493 (66%), Gaps = 6/493 (1%)
Query: 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVN 79
+ G + KVSGP+V A+ + A++ + VG +IGEII D A+IQVYEET+G+
Sbjct: 9 QIGKIIKVSGPLVXAENXSEASIQDXCLVGDLGVIGEIIEXRQDVASIQVYEETSGIGPG 68
Query: 80 DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQ 139
+PV T + LSVELGPGI+ FDGIQRPL T + ++ RGV +PALD + W F+
Sbjct: 69 EPVRSTGEALSVELGPGIISQXFDGIQRPLDTFXEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 140 PKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQ 199
I EG ++ GD+ V E ++QH + +P G V + +G +++ D + +E +
Sbjct: 129 AT-IEEGTEVSAGDIIGYVDETKIIQHKIXVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 200 GVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259
K T Q WPVR RP+ KL D P +TGQRV+D FP GG A+PG FG GKT
Sbjct: 187 QGLKELTXXQKWPVRRGRPIKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319
V+ ++K+S+ D VVYVGCGERGNE +V+ +FP+L + ES+ +RT L+ANTS
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPEL---IDPNTGESLXERTVLIANTS 303
Query: 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 379
N PVAAREASIYTGITIAEYFRD GY+V++ ADSTSRWAEALRE SGRL E P D GYPA
Sbjct: 304 NXPVAAREASIYTGITIAEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYPA 363
Query: 380 YLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLD 439
YL +RLA +YER+G+V LG +R GS+T + AVSP GGD S+PVT TL +V+VFWGLD
Sbjct: 364 YLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLD 423
Query: 440 KKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQV 498
LAQ++HFPS+NW+ SYS YST + + +Q D+ + T+ +LQ E+ LNEIV++
Sbjct: 424 SSLAQKRHFPSINWIQSYSLYSTEVGRYXDQILQQDWSDXVTEGXRILQEEEQLNEIVRL 483
Query: 499 GYLWSLSFHSFLC 511
+ SLS + L
Sbjct: 484 VGIDSLSDNDRLT 496
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 27/311 (8%)
Query: 209 QAWPVRTPRPVSSKLA-ADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267
+ P+ P P +L+ AD L TG +V+D L P GG + G G GKTV+ Q L
Sbjct: 107 ERHPIHRPAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 166
Query: 268 ---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324
+ V+ G GER E ++ + ++ V+ +T++V N P
Sbjct: 167 NVAQEHGGLSVFAGVGERTREGNDLYHEM----------KDSGVISKTSMVFGQMNEPPG 216
Query: 325 AREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAA 383
AR TG+T+AEYFRD G +V + D+ R+ +A E+S L MP+ GY LA
Sbjct: 217 ARLRVALTGLTMAEYFRDREGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 276
Query: 384 RLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLA 443
+ ER K GS+T + A+ P D++DP + T + + L++KLA
Sbjct: 277 EMGQLQERITSTK-------KGSITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLA 329
Query: 444 QRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLWS 503
+ +P+V+ L S S+ + E + + ++VLQR +DL +I+ + +
Sbjct: 330 EMGIYPAVDPLASTSRILSPAVVGEEHY-----RVARGVQQVLQRYNDLQDIIAILGMDE 384
Query: 504 LSFHSFLCCFK 514
LS L +
Sbjct: 385 LSDEDKLIVAR 395
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 27/308 (8%)
Query: 212 PVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK--- 267
P+ P P +LA + +L TG +V+D L P + GG + G G GKTV+ Q L
Sbjct: 117 PIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176
Query: 268 YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327
+ V+ G GER E ++ + ++ V+ +T +V N P AR
Sbjct: 177 QEHGGISVFAGVGERTREGNDLYHEM----------KDSGVISKTAMVFGQMNEPPGARM 226
Query: 328 ASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLA 386
TG+T+AEYFRD G + + D+ R+ +A E+S L MP+ GY LA +
Sbjct: 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMG 286
Query: 387 SFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRK 446
ER GS+T + A+ P D++DP + T S + L++KLA+
Sbjct: 287 QLQERITSTA-------KGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMG 339
Query: 447 HFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLWSLSF 506
+P+V+ L+S S+ + A E E+ + K ++ L+R +L +I+ + + LS
Sbjct: 340 IYPAVDPLVSTSR-ALAPEIVGEE----HYQVARKVQQTLERYKELQDIIAILGMDELSD 394
Query: 507 HSFLCCFK 514
L +
Sbjct: 395 EDKLVVHR 402
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 22 GYVRKVSGPVVIADGMNGA--AMYELVRVGHD---------NLIGEI-IRLEGDSATIQV 69
G V +V GPVV NG A+Y +++ H +L E+ + L D+
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 70 YEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
T GL+ V+ T P+SV +G LG +F+ + P+
Sbjct: 64 MASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPI 103
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 18/234 (7%)
Query: 226 DTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNE 285
D P + G R +D L +G I G GK+ + + +++D +V GERG E
Sbjct: 52 DQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGRE 111
Query: 286 MAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345
+ E L PQ S + + LV TS+ P R + +T TIAEYFRD G
Sbjct: 112 VNEFLALLPQ-----------STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGK 160
Query: 346 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTG 405
NV +M DS +R+A A R++ E G+P + + L ERA GP G
Sbjct: 161 NVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERA-------GPAPKG 213
Query: 406 SVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
S+T + V + +DP+ SI+ L ++LA+ HFP+++ +S S+
Sbjct: 214 SITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASR 267
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVL 290
TG R ++AL G + G GK+V+ +++Y+ +D +V GERG E+ + +
Sbjct: 143 TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFI 202
Query: 291 MDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMM 350
+ + PDGR SV+ + A P+ + + Y IAE FRD G +V ++
Sbjct: 203 EN-----ILGPDGRARSVV----IAAPADVSPLLRMQGAAYA-TRIAEDFRDRGQHVLLI 252
Query: 351 ADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410
DS +R+A A REI+ + E PA GYP + A+L + ERAG G GS+T
Sbjct: 253 MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGN-----GIHGGGSITAF 307
Query: 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL 464
V G D DP+ + +I+ L ++LA+ H+P+++ S S+ TAL
Sbjct: 308 YTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL 361
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 138/310 (44%), Gaps = 26/310 (8%)
Query: 209 QAWPVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267
+ W + P +L+ LL TG +V+D + P GG + G G GKTV L +
Sbjct: 105 ERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIR 164
Query: 268 ---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324
+S V+ G GER E + + ++T + +V+ + +LV N P
Sbjct: 165 NIAIEHSGYSVFAGVGERTREGNDF---YHEMT-------DSNVIDKVSLVYGQMNEPPG 214
Query: 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAAR 384
R TG+T+AE FRD G +V + D+ R+ A E+S L MP+ GY LA
Sbjct: 215 NRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEE 274
Query: 385 LASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 444
+ ER K TGS+T V AV P D +DP + T + + L +++A
Sbjct: 275 MGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAS 327
Query: 445 RKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLWSL 504
+P+V+ L S S+ L E +D + +LQR +L +I+ + + L
Sbjct: 328 LGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDEL 382
Query: 505 SFHSFLCCFK 514
S L +
Sbjct: 383 SEEDKLVVAR 392
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 108 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 167
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 168 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 222
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 223 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 282
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 283 SAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 335
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 336 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 390
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 391 QDIIAILGMDELSEQDKLTV 410
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 102 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 161
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 162 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 216
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 217 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 276
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 277 SAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 329
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 330 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 384
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 385 QDIIAILGMDELSEQDKLTV 404
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 97 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 156
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 157 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 211
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 212 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 271
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 272 SAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 324
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 325 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 379
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 380 QDIIAILGMDELSEQDKLTV 399
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 108 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 167
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 168 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 222
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 223 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 282
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 283 SAFGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 335
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 336 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 390
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 391 QDIIAILGMDELSEQDKLTV 410
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 97 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 156
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 157 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 211
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 212 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 271
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 272 SAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 324
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 325 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 379
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 380 QDIIAILGMDELSEQDKLTV 399
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 212 PVRTPRPVSSKL----AADTP-----------LLTGQRVLDALFPSVLGGTCAIPGAFGC 256
P+ P+ SKL AD P L TG +V+D L P GG + G G
Sbjct: 135 PIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGV 194
Query: 257 GKTVISQALSK---YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313
GKTV Q L ++ V+ G GER E ++ + + + +G +
Sbjct: 195 GKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE-----SKVA 249
Query: 314 LVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 372
LV N P AR TG+TIAEYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 250 LVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 309
Query: 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV 432
+ GY LA + ER K GSVT V AV P D +DP + T + +
Sbjct: 310 SAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHL 362
Query: 433 QVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDL 492
L + +++ +P+V+ L S S+ A E +D + +K +E LQ L
Sbjct: 363 DATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VASKVQETLQTYKSL 417
Query: 493 NEIVQVGYLWSLSFHSFLCC 512
+I+ + + LS L
Sbjct: 418 QDIIAILGMDELSEQDKLTV 437
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 304
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 305 -------KGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 357
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 358 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 407
Query: 512 CFK 514
+
Sbjct: 408 VSR 410
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 47/324 (14%)
Query: 209 QAWPVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTV------- 260
Q P+ P +++ + +L TG +V+D L P GG + G G GKTV
Sbjct: 112 QFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 171
Query: 261 -ISQALSKYSNSDTVVYVGCGER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVA 316
+++A YS V+ G GER GN++ +++ + + + + LV
Sbjct: 172 NVAKAHGGYS-----VFAGVGERTREGNDLYHEMIESGVINL-------KDATSKVALVY 219
Query: 317 NTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADS 375
N P AR TG+T+AEYFRD G +V + D+ R+ +A E+S L +P+
Sbjct: 220 GQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAV 279
Query: 376 GYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVF 435
GY LA + + ER K GS+T V A+ P D +DP + T + +
Sbjct: 280 GYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPADDLTDPAPATTFAHLDAT 332
Query: 436 WGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQRED 490
L + +A+ +P+V+ L S S+ DP+ + ++ +++LQ
Sbjct: 333 TVLSRAIAELGIYPAVDPLDSTSRI----------MDPNIVGSEHYDVARGVQKILQDYK 382
Query: 491 DLNEIVQVGYLWSLSFHSFLCCFK 514
L +I+ + + LS L +
Sbjct: 383 SLQDIIAILGMDELSEEDKLTVSR 406
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 125 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 179
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 180 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 232
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 233 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 292
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 293 -------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 345
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 346 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 395
Query: 512 CFK 514
+
Sbjct: 396 VSR 398
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 135 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 189
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 190 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 242
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 243 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 302
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 303 -------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 355
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 356 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 405
Query: 512 CFK 514
+
Sbjct: 406 VSR 408
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 304
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 305 -------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 357
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 358 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 407
Query: 512 CFK 514
+
Sbjct: 408 VSR 410
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 192 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 244
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 245 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 304
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 305 -------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 357
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 358 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 407
Query: 512 CFK 514
+
Sbjct: 408 VSR 410
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--------ISQALSKYSNSDTVVYVGCG 280
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 183 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 237
Query: 281 ER---GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
ER GN++ +++ + + + + LV N P AR TG+T+A
Sbjct: 238 ERTREGNDLYHEMIESGVINL-------KDATSKVALVYGQMNEPPGARARVALTGLTVA 290
Query: 338 EYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVK 396
EYFRD G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 291 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 350
Query: 397 CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLIS 456
GS+T V A+ P D +DP + T + + L + +A+ +P+V+ L S
Sbjct: 351 -------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 403
Query: 457 YSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQVGYLWSLSFHSFLC 511
S+ DP+ + ++ +++LQ L +I+ + + LS L
Sbjct: 404 TSRI----------MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLT 453
Query: 512 CFK 514
+
Sbjct: 454 VSR 456
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 136/311 (43%), Gaps = 26/311 (8%)
Query: 212 PVRTPRPVSSKLAADTPLL-TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK--- 267
P+ P ++L + TG +V++ L P GG + G G GKTV+ L
Sbjct: 131 PIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA 190
Query: 268 YSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327
++ V+ G GER E ++ M+ + + ES + LV N P AR
Sbjct: 191 KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAES---KVALVYGQMNEPPGARM 247
Query: 328 ASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLA 386
T +T+AEYFRD+ +V + D+ R+ +A E+S L MP+ GY L+ +
Sbjct: 248 RVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307
Query: 387 SFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRK 446
S ER K GS+T + AV P D +DP + T + + L + LA +
Sbjct: 308 SLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKG 360
Query: 447 HFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGYLWS 503
+P+V+ L S S E YE I + +E LQR +L +I+ + L
Sbjct: 361 IYPAVDPLDSTSTMLQPRIVGEEHYE--------IAQRVKETLQRYKELQDIIAILGLDE 412
Query: 504 LSFHSFLCCFK 514
LS L +
Sbjct: 413 LSEEDRLTVAR 423
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 26/270 (9%)
Query: 202 KKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260
+ T ++ + +P P + S+ + PL TG +DA+ P G I G GKT
Sbjct: 119 RGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTA 178
Query: 261 ISQ--ALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318
++ L++ + VYV G++ + +A+V+ +F +E M+ T +VA T
Sbjct: 179 VATDTILNQQGQNVICVYVAIGQKASSVAQVVTNF----------QERGAMEYTIVVAET 228
Query: 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378
++ P + + YTG +AEYF + ++ D S+ A+A R++S L P YP
Sbjct: 229 ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYP 288
Query: 379 A---YLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--Q 433
YL +RL ERA K+ L G GS+T + V GD S + + +SI Q
Sbjct: 289 GDVFYLHSRL---LERAAKLSSLLGE---GSMTALPIVETQAGDVSAYIPTNVISITDGQ 342
Query: 434 VFWGLDKKLAQRKHFPSVNWLISYSKYSTA 463
+F D L P++N IS S+ +A
Sbjct: 343 IFLSAD--LFNAGIRPAINVGISVSRVGSA 370
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 287 AEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGY 345
A + + F + + D R+ + R+ + N +N P R A+ +T AEY + G
Sbjct: 189 AAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGM 248
Query: 346 NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTG 405
+V ++ + +AEALREIS E+P GYP YL LA+ +ERAG+++ L G
Sbjct: 249 HVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGL-----KG 303
Query: 406 SVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
SVT + ++ P D + P+ T I + L ++L + P ++ L S S+
Sbjct: 304 SVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSR 357
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETAG 75
EY +++V GP++ + ++G EL+ V N G+++ ++ D A +Q++E T+G
Sbjct: 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSG 69
Query: 76 LMVNDPVLR-THKPLSVELGPGILGNIFDGIQRP 108
+ + + +R PL + + ++G +FDG+ RP
Sbjct: 70 INLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRP 103
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 6/157 (3%)
Query: 304 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALR 362
R+ + R+ N +N P R A+ +T AEY + G +V ++ + +AEALR
Sbjct: 206 RQTGAIDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTDXTNYAEALR 265
Query: 363 EISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSD 422
EIS E+P GYP YL LA+ +ERAG+++ L GSVT + ++ P D +
Sbjct: 266 EISAARREVPGRRGYPGYLYTNLATLFERAGRIRGL-----KGSVTQIPILTXPEDDKTH 320
Query: 423 PVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
P+ T I + L ++L + P ++ L S S+
Sbjct: 321 PIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSR 357
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETAG 75
EY +++V GP+ + ++G EL+ V N G+++ ++ D A +Q++E T+G
Sbjct: 10 KEYRTIKEVVGPLXAVEKVSGVKYEELIEVRXQNGEIRRGQVLEVQEDKAXVQIFEGTSG 69
Query: 76 LMVNDPVLR-THKPLSVELGPGILGNIFDGIQRP 108
+ + + +R PL + + +G +FDG+ RP
Sbjct: 70 INLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRP 103
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 274 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333
VV+ G E++ + +F + + R+ L N ++ P R +
Sbjct: 189 VVFAAMGITQRELSYFIQEFERT----------GALSRSVLFLNKADDPTIERILTPRMA 238
Query: 334 ITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA 392
+T+AEY + Y+V ++ + ++EALREI E+P GYP Y+ LA+ YERA
Sbjct: 239 LTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERA 298
Query: 393 GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVN 452
G V+ + GSVT + +S P D + P+ T I + L ++L ++ +P ++
Sbjct: 299 GVVEG-----KKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPID 353
Query: 453 WLISYSK 459
L S S+
Sbjct: 354 PLPSLSR 360
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETA 74
+ EY + +SGP++ + A +V + G++I + + A IQV+EET
Sbjct: 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETT 64
Query: 75 GL-MVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
GL + V + + +LG F+GI +P+
Sbjct: 65 GLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPI 100
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 22/236 (9%)
Query: 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVGCGERGN 284
TG +D V G I A G T I+ +++ ++ + VV+ G
Sbjct: 129 TGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAFAVVFAAMGITNE 188
Query: 285 EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DM 343
E + DF + ++R + N ++ P R + +T AEY +
Sbjct: 189 EAQYFMSDF----------EKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEH 238
Query: 344 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPER 403
G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG VK
Sbjct: 239 GMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGA----- 293
Query: 404 TGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
GSVT + +S PG D + P+ + I + + ++L ++ +P +N L S S+
Sbjct: 294 KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR 349
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 274 VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333
VV+ G E++ + +F + + R+ L N ++ P R +
Sbjct: 189 VVFAAMGITQRELSYFIQEFERT----------GALSRSVLFLNKADDPTIERILTPRMA 238
Query: 334 ITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA 392
+T+AEY + Y+V ++ + + EALREI E+P GYP Y+ LA+ YERA
Sbjct: 239 LTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERA 298
Query: 393 GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVN 452
G V+ + GSVT + +S P D + P+ T I + L ++L ++ +P ++
Sbjct: 299 GVVEG-----KKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPID 353
Query: 453 WLISYSK 459
L S S+
Sbjct: 354 PLPSLSR 360
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDN---LIGEIIRLEGDSATIQVYEETA 74
+ EY + +SGP++ + A +V + G++I + + A IQV+EET
Sbjct: 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETT 64
Query: 75 GL-MVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
GL + V + + +LG F+GI +P+
Sbjct: 65 GLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPI 100
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 122 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 181
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 182 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 231
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 232 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 288
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 289 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 343
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 344 VGLSVSRVGSAAQ 356
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMV 78
+E G V V + G+N ELV + G + LE I ++ +
Sbjct: 3 NETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNLEPGQVGIVLFGSDRLVKE 61
Query: 79 NDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
+ V RT + V +GPG+LG + D + P+
Sbjct: 62 GELVKRTGNIVDVPVGPGLLGRVVDALGNPI 92
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 123 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 182
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 183 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 232
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 233 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 289
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 290 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 344
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 345 VGLSVSRVGSAAQ 357
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMV 78
+E G V V + G+N ELV + G + LE I ++ +
Sbjct: 4 NETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNLEPGQVGIVLFGSDRLVKE 62
Query: 79 NDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
+ V RT + V +GPG+LG + D + P+
Sbjct: 63 GELVKRTGNIVDVPVGPGLLGRVVDALGNPI 93
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 313
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 314 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 368
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 369 VGLSVSRVGSAAQ 381
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 313
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 314 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 368
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 369 VGLSVSRVGSAAQ 381
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALIL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 207 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 256
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 257 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 313
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 314 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 368
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 369 VGLSVSRVGSAAQ 381
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 10 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNL 68
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 69 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWA 358
+ D + ++R + N ++ P R + +T AEY + G +V ++ + +A
Sbjct: 194 MSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 253
Query: 359 EALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418
EALR++ E+P GYP Y+ LA+ YERAG VK GSVT + +S PG
Sbjct: 254 EALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGA-----KGSVTQIPILSMPGD 308
Query: 419 DFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
D + P+ + I + + ++L ++ +P +N L S S+
Sbjct: 309 DITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR 349
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWA 358
+ D + ++R + N ++ P R + +T AEY + G +V ++ + +A
Sbjct: 203 MSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 262
Query: 359 EALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418
EALR++ E+P GYP Y+ LA+ YERAG VK GSVT + +S PG
Sbjct: 263 EALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGA-----KGSVTQIPILSMPGD 317
Query: 419 DFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
D + P+ + I + + ++L ++ +P +N L S S+
Sbjct: 318 DITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR 358
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 12 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 71
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 72 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWA 358
+ D + ++R + N ++ P R + +T AEY + G +V ++ + +A
Sbjct: 194 MSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 253
Query: 359 EALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418
EALR++ E+P GYP Y+ LA+ YERAG VK GSVT + +S PG
Sbjct: 254 EALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGA-----KGSVTQIPILSMPGD 308
Query: 419 DFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
D + P+ + I + + ++L ++ +P +N L S S+
Sbjct: 309 DITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR 349
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 3 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 62
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 63 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVGCGERGN 284
TG +D V G I A G I+ +++ ++ + VV+ G
Sbjct: 138 TGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNE 197
Query: 285 EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DM 343
E + DF + ++R + N ++ P R + +T AEY +
Sbjct: 198 EAQYFMSDF----------EKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEH 247
Query: 344 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPER 403
G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG VK
Sbjct: 248 GMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGA----- 302
Query: 404 TGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
GSVT + +S PG D + P+ + I + + ++L ++ +P +N L S S+
Sbjct: 303 KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR 358
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-DNLI--GEIIRLEGDSATIQVYEETAG 75
EY + +++GP++ + E+V + D + G+++ D +QV+E T G
Sbjct: 12 KEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGG 71
Query: 76 LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRP 108
L + V+ T + L + +LG I G P
Sbjct: 72 LDKDCGVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS----------QALSKYSNSDTVVYV 277
P+ TG + +DAL P G I G GKT ++ S S VYV
Sbjct: 182 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 241
Query: 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337
G++ + +A QL TL + MK + +VA T++ + + +T +I
Sbjct: 242 AVGQKRSTVA-------QLVQTL---EQHDAMKYSIIVAATASEAAPLQYLAPFTAASIG 291
Query: 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGK 394
E+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA K
Sbjct: 292 EWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK 348
Query: 395 VKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLAQRKHFPSVN 452
L E +GS+T + + GGD S + + +SI Q+F L+ +L + P++N
Sbjct: 349 ---LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAIN 403
Query: 453 WLISYSKYSTALE 465
+S S+ +A +
Sbjct: 404 VGLSVSRVGSAAQ 416
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ S+ R+ DE +E G V V + G+N ELV + G + L
Sbjct: 45 VSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEF-SSGVKGMALNL 103
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E I ++ + + V RT + V +GPG+LG + D + P+
Sbjct: 104 EPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 152
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 34/265 (12%)
Query: 219 VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV--ISQALSKYSNSDTVVY 276
V + + D P+ TG + +D++ P G I G GKT I +++ + +Y
Sbjct: 136 VIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIY 195
Query: 277 VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITI 336
V G++ + ++ V+ E + T +V T++ A + + Y G +
Sbjct: 196 VAIGQKASTISNVVRKL----------EEHGALANTIVVVATASESAALQYLAPYAGCAM 245
Query: 337 AEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAG 393
EYFRD G + ++ D S+ A A R+IS L P +P YL +RL ERA
Sbjct: 246 GEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERAA 302
Query: 394 KVKC----------LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKK 441
+V + G +TGS+T + + GD S V + +SI Q+F L+
Sbjct: 303 RVNAEYVEAFTKGEVKG--KTGSLTALPIIETQAGDVSAFVPTNVISITDGQIF--LETN 358
Query: 442 LAQRKHFPSVNWLISYSKYSTALES 466
L P+VN IS S+ A ++
Sbjct: 359 LFNAGIRPAVNPGISVSRVGGAAQT 383
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 116 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 172
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 173 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 222
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 223 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 282
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 283 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 333
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 334 FYKGIRPAINVGLSVSRVGSAAQT 357
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 305
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 306 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 356
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 357 FYKGIRPAINVGLSVSRVGSAAQT 380
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 305
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 306 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 356
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 357 FYKGIRPAINVGLSVSRVGSAAQT 380
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 121 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 177
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 178 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 227
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 228 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 287
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 288 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 338
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 339 FYKGIRPAINVGLSVSRVGSAAQT 362
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 305
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 306 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 356
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 357 FYKGIRPAINVGLSVSRVGSAAQT 380
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 182 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 238
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 239 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 288
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 289 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 349 ---LERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 399
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 400 FYKGIRPAINVGLSVSRVGSAAQT 423
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 305
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 306 ---LERAAKMNDSFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 356
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 357 FYKGIRPAINVGLSVSRVGSAAQT 380
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 222 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT------VISQALSKYSNSDT-- 273
+++ P+ TG + +D+L P G I G GKT +I+Q K N T
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ---KRFNDGTDE 195
Query: 274 -----VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
+YV G++ + +A QL L D MK T +V+ T++ +
Sbjct: 196 KKKLYCIYVAIGQKRSTVA-------QLVKRLTDA---DAMKYTIVVSATASDAAPLQYL 245
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 246 APYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 305
Query: 386 ASFYERAGKVK-CLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKL 442
ERA K+ GG GS+T + + GD S + + +SI Q+F L+ +L
Sbjct: 306 ---LERAAKMNDSFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETEL 356
Query: 443 AQRKHFPSVNWLISYSKYSTALES 466
+ P++N +S S+ +A ++
Sbjct: 357 FYKGIRPAINVGLSVSRVGSAAQT 380
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 26/262 (9%)
Query: 212 PVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-QALSKYS 269
P+ +P P V + + PL TG + +D++ P G I G GKT I+ +
Sbjct: 128 PIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187
Query: 270 NSDTV-VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
D + +YV G++ + +A V+ R+ + T +V +++ P
Sbjct: 188 GQDVICIYVAIGQKQSTVAGVVETL----------RQHDALDYTIVVTASASEPAPLLYL 237
Query: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARL 385
+ Y G + EYF G + ++ D S+ A A RE+S L P YP YL +RL
Sbjct: 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRL 297
Query: 386 ASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDKKLA 443
ERA K+ G GS+T + + GD S + + +SI Q+F L+ L
Sbjct: 298 ---LERAAKLSDEKG---GGSLTALPFIETQAGDVSAYIPTNVISITDGQIF--LESDLF 349
Query: 444 QRKHFPSVNWLISYSKYSTALE 465
P+VN IS S+ A +
Sbjct: 350 YSGVRPAVNVGISVSRVGGAAQ 371
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 26/265 (9%)
Query: 209 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT--VISQAL 265
+ P+ + P V + + PL TG + +DAL P G I G GKT I +
Sbjct: 125 ETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTII 184
Query: 266 SKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325
++ + +YV G++ + +A V+ + PD T +V +++ P
Sbjct: 185 NQKDQNMICIYVAIGQKESTVATVVETLAK--HGAPD--------YTIVVTASASQPAPL 234
Query: 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLA 382
+ Y G+ + EYF MG +V ++ D S+ A A R++S L P YP YL
Sbjct: 235 LFLAPYAGVAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLH 294
Query: 383 ARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIV--QVFWGLDK 440
+RL ERA K+ G GS+T + V GD S + + +SI Q+F D
Sbjct: 295 SRL---LERAAKLSDAKG---GGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDL 348
Query: 441 KLAQRKHFPSVNWLISYSKYSTALE 465
+ + P++N +S S+ A +
Sbjct: 349 FFSGVR--PAINAGLSVSRVGGAAQ 371
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 23/240 (9%)
Query: 226 DTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS--QALSKYSNSDTVVYVGCGERG 283
DTPL TG + +D+ P G I G GKT I+ +++ +YV G++
Sbjct: 156 DTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKK 215
Query: 284 NEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM 343
+ +A ++ R+ + TT+V +++ P + + + Y G EYF
Sbjct: 216 SAIARIIDKL----------RQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYS 265
Query: 344 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLAARLASFYERAGKVK-CLG 399
G + ++ D S+ A A R++S P YP YL +RL ERA ++ LG
Sbjct: 266 GRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRL---LERAVRLNDKLG 322
Query: 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
G GS+T + V D S + + +SI L+ L P++N +S S+
Sbjct: 323 G----GSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSR 378
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRL 60
+ V ++ +FE++ + G V +V + A G+N + ELV + G L
Sbjct: 20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVXVSELVEFVETGVKGVAFNL 79
Query: 61 EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPL 109
E D+ I + E + V R + + V +G +LG + + + PL
Sbjct: 80 EEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPL 128
>pdb|1UM2|C Chain C, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|D Chain D, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 21
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 269 SNSDTVVYVGCGERGNEMAE 288
SNSD ++YVG GERGNEMAE
Sbjct: 2 SNSDAIIYVGSGERGNEMAE 21
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCG------ERGNEMAEVLMDFPQLTMTLP 301
A+PG G I Q L + V VG G E + A++ +DFP +
Sbjct: 135 IALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSV----- 189
Query: 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 356
G E++M TL T+ + AA+E I + +A + MG V T R
Sbjct: 190 -GATENIMSAATLAKGTTILENAAKEPEI---VDLANFLNAMGAKVRGAGTGTIR 240
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 263 QALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKR 311
+ALS + N+ ++ G +RGNE E++ D L + G S +KR
Sbjct: 339 KALSGFDNTKVILIAGGLDRGNEFDELIPDITGLKHXVVLGESASRVKR 387
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 228 PLLTGQRVLDAL---FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVG 278
P T R L ++ PS G TCA+ G G GK+ I++ L ++ +++ + +G
Sbjct: 28 PKQTNHRTLKSINFFIPS--GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIG 79
>pdb|3ZRH|A Chain A, Crystal Structure Of The Lys29, Lys33-Linkage-Specific
Trabid Otu Deubiquitinase Domain Reveals An
Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)
Length = 454
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 60 LEGDSATIQVYEETAG----LMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIR 115
+EGD A I+ Y+ + G + D V ++P + ++G ++ ++ QR +AI
Sbjct: 31 VEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLV-HLAIRFQRQ-DMLAIL 88
Query: 116 SGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175
+V +PA+ L E ++I GD +A F L+ LP D
Sbjct: 89 LTEVSQQAAKCIPAMVCPELTEQIRREIAASLHQRKGD-FACYFLTDLVT--FTLPAD-- 143
Query: 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRV 235
+ + P Q L D VL+ + Q + + + W + + S+L A L +
Sbjct: 144 --IEDLPPTVQEKLFDEVLDRDVQKELEEESPIINWSLELATRLDSRLYA----LWNRTA 197
Query: 236 LDALFPSVLGGTCAI 250
D L SVL T I
Sbjct: 198 GDCLLDSVLQATWGI 212
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK 459
G SV + D DP S L + Q GL+ L H + ++ ++K
Sbjct: 151 GCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNK 210
Query: 460 YSTALESFY 468
+S E+FY
Sbjct: 211 FSLPSEAFY 219
>pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 301
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 8 RLTTFEDEEKESEY-GYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEI-IRLEGDSA 65
R F E++ ++ G+ V P +I+ M G Y L + HD G I L+ +
Sbjct: 76 RERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVN 135
Query: 66 TIQVYEETAGL 76
QV+ +T G+
Sbjct: 136 VTQVFVDTVGM 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,844,851
Number of Sequences: 62578
Number of extensions: 679631
Number of successful extensions: 1882
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1593
Number of HSP's gapped (non-prelim): 119
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)